VMD-L Mailing List
From: Thomas Evangelidis (te8624_at_mbg.duth.gr)
Date: Wed Jul 15 2009 - 16:58:27 CDT
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simple question:
I wan to parse some pdb files and keel only the specified ligand/s. e.g.
set protMol [mol new 1BQG.pdb]
animate write pdb "PDB/1bqg.pdb" sel [atomselect $protMol "protein or
resname RMN SMN"] $protMol
mol delete $protMol
However the ligands RMN and SMN are converted to ATOMS which encumbers
further analysis with other programs. How can I avoid that?
thanks in advance,
Tom
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