From: Thomas Evangelidis (te8624_at_mbg.duth.gr)
Date: Wed Jul 15 2009 - 16:58:27 CDT

simple question:

I wan to parse some pdb files and keel only the specified ligand/s. e.g.

set protMol [mol new 1BQG.pdb]
animate write pdb "PDB/1bqg.pdb" sel [atomselect $protMol "protein or
resname RMN SMN"] $protMol
mol delete $protMol

However the ligands RMN and SMN are converted to ATOMS which encumbers
further analysis with other programs. How can I avoid that?

thanks in advance,
Tom