VMD-L Mailing List
From: Ginger Emel (mrd_ninja_at_yahoo.com)
Date: Fri Jul 13 2012 - 11:22:50 CDT
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I am following the instructions listed in the NAMD tutorial for unix. On page 11, step 8, it says the following:
8 In a Terminal window (again, be sure that you are in the 1-1-build
directory), type the following command:
> vmd -dispdev text -e ubq.pgn
This will run the package psfgen on the file ubq.pgn and generate the psf and the pdb file of ubiquitin with hydrogens.
When I try this, I get:
invalid command name "dispdev"
I am in the 1-1-build directory. VMD is in my main directory and I have created an alias correctly.
Can anyone tell me what I'm doing wrong?
-Ginger
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