VMD-L Mailing List

From: Ebert Maximilian (m.ebert_at_umontreal.ca)
Date: Wed Aug 27 2014 - 13:22:29 CDT

Hi there,

I am looking for a possibility to draw in VMD a spherical volume with a giving radius around an atom but only include space not occupied but other molecules. For example I have a protein loaded in VMD and I draw a sphere around an atom I want the sphere volume minus the protein VDW volume. Is this possible?

I am trying to display a solvent accessible volume so to speak.

Thank you,

Max