VMD-L Mailing List

From: luca.dallaglio2_at_studio.unibo.it
Date: Tue Jun 12 2007 - 02:55:14 CDT

Dear All,
I need to translate my pdb in a neutral .psf and .pdb in order to avoid
collapse of my protein in a vacuum simulation (dielectric 80).
I know I can "patch ASPP" "patch GLUP" and "patch HS2", but what about ARG and
LYS?
How to preserve NH2 and COOH N-terminal and C-terminal? Because using {first
NONE last NONE} I obtain NH and CO.
Thanks,
Luca