From: jnsong (
Date: Tue May 17 2011 - 08:54:54 CDT

Dear all,

As we all know, the PSF files produced by "$sel writepsf" function in
VMD will lack angles, dihedrals, impropers, and cross-terms. If I use
this kind psf to perform MD simulation using NAMD, will the results of
MD simulation be different from the psf generated by psfgen?

Thank you very much!


Jianing Song
Ph. D. Student 
Institute of Theoretical and Computational Sciences
Dept. Phys.
East China Normal University
3663 North Zhongshan Road
Shanghai, P. R. China