From: Peter Freddolino (
Date: Tue Mar 20 2007 - 22:02:58 CDT

Hi Arindam,
VMD doesn't do simulations, so you're probably looking to do replica
exchange with NAMD ;-)
If you download a recent version of NAMD, you'll be able to find a set
of replica exchange scripts and documentation in the lib directory.

Arindam Ganguly wrote:
> Hi VMD Users,
> has anybody tried Replica exchange molecular dynamics om VMD. any
> references, tutorials and online materials will be really help. i have
> read some material but it all sound very cryptic. any fundamental
> apporach to the same would be a great help. thanks.
> Arindam
> --
> Arindam Ganguly
> Graduate Student
> VP(Chemistry Graduate Student Association-CGSA)
> Dept. of Chemistry, UMKC
> Phone:-816-419-1806
> Email:- <>