VMD-L Mailing List

From: Joseph Baker (bakerj_at_tcnj.edu)
Date: Mon Aug 03 2015 - 16:31:41 CDT

Hi all,

VMD was working fine for me on my Centos 6.6 machines until after a recent
update. Now when I start VMD I am able to view my system in Cartoon
representation, but NewCartoon does not work. Also, protein and water does
not show in lines or points representation, however ions do show up in the
points representation.

I am getting the following output when starting VMD

Info) VMD for LINUXAMD64, version 1.9.2beta1 (September 12, 2014)
Info) http://www.ks.uiuc.edu/Research/vmd/
Info) Email questions and bug reports to vmd_at_ks.uiuc.edu
Info) Please include this reference in published work using VMD:
Info) Humphrey, W., Dalke, A. and Schulten, K., `VMD - Visual
Info) Molecular Dynamics', J. Molec. Graphics 1996, 14.1, 33-38.
Info) -------------------------------------------------------------
Info) Multithreading available, 24 CPUs detected.
Info) Free system memory: 30442MB (94%)
Info) Creating CUDA device pool and initializing hardware...
Info) Detected 4 available CUDA accelerators:
Info) [0] GeForce GTX TITAN Black 15 SM_3.5 @ 0.98 GHz, 6.0GB RAM, KTO,
AE1, ZCP
Info) [1] GeForce GTX TITAN Black 15 SM_3.5 @ 0.98 GHz, 6.0GB RAM, AE1, ZCP
Info) [2] GeForce GTX TITAN Black 15 SM_3.5 @ 0.98 GHz, 6.0GB RAM, AE1, ZCP
Info) [3] GeForce GTX TITAN Black 15 SM_3.5 @ 0.98 GHz, 6.0GB RAM, AE1, ZCP
Warning) Detected X11 'Composite' extension: if incorrect display occurs
Warning) try disabling this X server option. Most OpenGL drivers
Warning) disable stereoscopic display when 'Composite' is enabled.
libGL error: failed to load driver: swrast
Info) OpenGL renderer: GeForce GTX TITAN Black/PCIe/SSE2
Info) Features: STENCIL MSAA(4) MDE MTX NPOT PP PS
Info) GLSL rendering mode is NOT available.
Info) Textures: 2-D (16384x16384), 3-D (2048x2048x2048), Multitexture (4)
Info) Dynamically loaded 2 plugins in directory:
Info) /share/apps/vmd/lib192/plugins/LINUXAMD64/molfile

If the most recent version of kernel-headers applied to the system helps in
diagnosing this, it is

kernel-headers-2.6.32-504.30.3.el6.x86_64

I can provide additional info if necessary if you let me know what might be
needed to help troubleshoot this. Thanks.

Kind regards,
Joe 

--
Joseph Baker, PhD
Assistant Professor
Department of Chemistry
C101 Science Complex
The College of New Jersey
Ewing, NJ 08628
Phone: (609) 771-3173
Web: http://bakerj.pages.tcnj.edu/
<https://sites.google.com/site/bakercompchemlab/>