VMD-L Mailing List

From: Ameya Harmalkar (aharmal1_at_jhu.edu)
Date: Sat Aug 01 2020 - 17:58:24 CDT

Hello,

I am new to VMD and I am trying to generate a trajectory from a set of PDB files. I am able to generate a trajectory and it depicts the transition that I want it to show.
I do, however, wish to color the frames in specific colors i.e. say my PDB file contains 100 models, and I want to color PDBs from 0-49 to red and 50-99 to blue. I have been trying to work around a way to do this, and I am not really sure how to use TCL scripts for the same.
Is there a way to do it? I do realize that there is a RWB type coloring based on trajectories, but i want to highlight specific frames in the movie.
Any guidance/suggestion would be really helpful!
Thanks,

Ameya

Ameya Harmalkar,

Second Year PhD Candidate | Gray Lab
Department of Chemical and Biomolecular Engineering,
Whiting School of Engineering | Johns Hopkins University,
Maryland Hall 303.