VMD-L Mailing List

From: Nuno R. L. Ferreira (nunolf_at_ci.uc.pt)
Date: Sat Feb 25 2006 - 11:42:49 CST

Hi *

When I load a peptide of *26* residues, I get the following warning:
Warning) Unusual bond between residues 25 and 26

In the manual it is said that for terminal aminoacids this could happen.

If I do the following:

set sel [atomselect top "protein name CA"]
$sel num

I get *25*
Any operation done on that $sel, will not describe my entire peptide. The
"protein" word, is not recognizing the 26th a.a.

But, the info messages on the vmd console, tell me that:
Info) Residues: 26

How can I surpass this?
BTW, is there a command to calculate the number of residues on the loaded
frame? I can´t find it on the manual.

Best regards,
Nuno

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Nuno Ricardo Santos Loureiro da Silva Ferreira
Departamento de Química
Faculdade de Ciências e Tecnologia
Universidade de Coimbra
3004-535 Coimbra - Portugal
Fax: +351 239 827703 - www.biolchem.qui.uc.pt
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