Date: Wed Dec 07 2005 - 16:32:33 CST

I found caver programe very nice to calculate cavity of binding site:
you can use it easily with pymol soft.
Also voidoo:



Andrea Spitaleri
Dulbecco Telethon Institute
c/o DIBIT Scientific Institute
Biomolecular NMR, 1B4
Via Olgettina 58
20132 Milano (Italy)

----- Original Message -----
From: Anthony Cruz <>
Date: Wednesday, December 7, 2005 7:01 pm
Subject: vmd-l: Protein volume and cavityes

> Hi:
> I want to determine the volume of my protein and the volume of the
> active
> site. This could be done with vmd??? any software???
> Best Regards
> Anthony