VMD-L Mailing List

From: spitaleri.andrea_at_hsr.it
Date: Wed Dec 07 2005 - 16:32:33 CST

Hi,
I found caver programe very nice to calculate cavity of binding site:
http://loschmidt.chemi.muni.cz/caver/download.php
you can use it easily with pymol soft.
Also voidoo:
http://www.csb.yale.edu/userguides/datamanip/uppsala/manuals/gerard_manuals.html

Regards,

andrea

Andrea Spitaleri
Dulbecco Telethon Institute
c/o DIBIT Scientific Institute
Biomolecular NMR, 1B4
Via Olgettina 58
20132 Milano (Italy)

----- Original Message -----
From: Anthony Cruz <acb15885_at_uprm.edu>
Date: Wednesday, December 7, 2005 7:01 pm
Subject: vmd-l: Protein volume and cavityes

> Hi:
> I want to determine the volume of my protein and the volume of the
> active
> site. This could be done with vmd??? any software???
>
> Best Regards
> Anthony
>