From: John Stone (johns_at_ks.uiuc.edu)
Date: Thu Sep 18 2003 - 14:09:30 CDT

Hi,
  Try out the "DynamicBonds" representation, it will recalculate bonds
on-the-fly as the trajectory progresses. You can use it in combination
with the "VDW" representation to emulate the CPK, and Licorice reps
as well.

Thanks,
  John Stone
  vmd_at_ks.uiuc.edu

On Thu, Sep 18, 2003 at 09:53:17PM +0900, Hiroyuki Maeshima wrote:
> Dear list members,
>
> I am a new user of VMD and let me ask your help.
>
> I am trying to load a pdb file and display a trajectory animation.
> The VMD automatically defines atomic bonds and draws them, but
> though the distance between atoms are changing significantly while
> the animation, the bonds are not renewed. Would you tell me
> the way to display atomic bonds correctly?
>
> Regards,
> H. Maeshima
>
>
> ********************************************
> Hiroyuki Maeshima
> Matsushita Electronic Components Co., Ltd.
> 1006 Kadoma, Kadoma City, Osaka 571-8506, Japan
> Phone:+81-6-6904-4754/ Fax:+81-6-6904-4740
> ********************************************

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
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