VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Mon Feb 27 2006 - 16:11:07 CST

Hi,
  For basics of Tcl scripting, see the documentation at www.tcl.tk
For VMD specific examples, I'd suggest the VMD User's Guide, or the
VMD tutorial for starters:
  http://www.ks.uiuc.edu/Training/Tutorials/vmd/tutorial-html/index.html

I'd suggest talking to Jan about how to best use these various pbc
scripts since he wrote them. His address is: saam_at_charite.de

  John Stone
  vmd_at_ks.uiuc.edu

On Mon, Feb 27, 2006 at 12:30:08PM -0500, snoze pa wrote:
> Hi John,
> I am new in tcl scripting. Could you sueegst me how to use this script, I
> mean with one example.
> thanks in advance
> snoze
>
> On 2/23/06, John Stone <johns_at_ks.uiuc.edu> wrote:
> >
> >
> > Take a look at the PBCTools and PBCWrap scripts, they should help you
> > with this:
> > http://www.ks.uiuc.edu/Research/vmd/script_library/scripts/pbctools/
> > http://www.ks.uiuc.edu/Research/vmd/script_library/scripts/pbcwrap/
> >
> > John Stone
> > vmd_at_ks.uiuc.edu
> >
> > On Thu, Feb 23, 2006 at 02:47:52PM -0500, snoze pa wrote:
> > > Dear VMD users,
> > > I am new in this mailing list and i have few questions. I am doing namd
> > > simulation and find that my water box size is increasing in one
> > direction
> > > while it is shrinking in other direction. Mark suggest me to check it
> > with
> > > vmd if anyone has written a display script that displays a system in
> > the
> > > original pbc cell.
> > > thanks in advance
> > > snoze
> >
> > --
> > NIH Resource for Macromolecular Modeling and Bioinformatics
> > Beckman Institute for Advanced Science and Technology
> > University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> > Email: johns_at_ks.uiuc.edu Phone: 217-244-3349
> > WWW: http://www.ks.uiuc.edu/~johns/ Fax: 217-244-6078
> > 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
Email: johns_at_ks.uiuc.edu                 Phone: 217-244-3349
  WWW: http://www.ks.uiuc.edu/~johns/      Fax: 217-244-6078