From: Ismail, Mohd F. (farid_at_ou.edu)
Date: Tue Aug 02 2011 - 23:49:04 CDT

If I recall correctly, if you change the view to VdW or even ball and stick, the line will be gone. I think I read this in hoomd documentation. There might be other ways that other people know better.

HTH,
--Farid
________________________________
From: owner-vmd-l_at_ks.uiuc.edu [owner-vmd-l_at_ks.uiuc.edu] on behalf of Vivek Ranjan [vranjan_at_ncsu.edu]
Sent: Tuesday, August 02, 2011 7:51 PM
To: vmd mailing list
Subject: vmd-l: viewing dcd files

Hello,

I generated a dcd file using LAMMPS with a periodic boundary condition. First I load a psf file in vmd and then read in dcd file. In the dynamics, whenever an atom crosses the box boundary, a long line is created. Eventually, there are too many such lines and it is difficult to view the actual molecules inside. Is there a way I can get rid of these lines and view only atoms ?

Please let me know.

Thank you,

Vivek