From: Thomas Evangelidis (
Date: Wed May 02 2012 - 04:01:09 CDT

You can do it both with PyMOL or UCSF Chimera. I prefer the latter because
it provides a GUI with many functionalities and predefined settings (e.g.
you can define the secondary structure).


On 2 May 2012 09:34, meisam valizadeh kiamahalleh <>wrote:

> Dear VMD users
> Kindly, would you please let me know if there is any free software or
> tools to build short peptides?
> Sharing your experiences would be highly appreciated.
> Best regards
> Meisam

Thomas Evangelidis
PhD student
Biomedical Research Foundation, Academy of Athens
4 Soranou Ephessiou , 115 27 Athens, Greece