VMD-L Mailing List

From: Ban Arn (ban.arn_at_gmail.com)
Date: Fri Dec 16 2011 - 09:28:41 CST

Dear VMD users

I have protien-ligand simulation trajectories.

I would like to find out fluctuation of ligand in the binding site upon
simulation time.

Is there a way or script available in vmd to perform this calculation.

Kindly advice.

Many Thanks
Balaji