From: Arash Firouzbakht (
Date: Tue Apr 06 2021 - 09:59:48 CDT

Dear VMD users,

I have been using VMD to visualize NAMD trajectories of a simple aqueous
box of a small protein with or without a PEGylated residue. Although the
secondary structures are correctly shown for the unPEGylated variant, the
protein with the non-canonical PEGylated residue lacks secondary structure
visualizations done with NewCartoon in VMD. Does anyone know a way around
this? I am using version 1.9.3 on 64-bit Windows. Please let me know if you
need any more information.