VMD-L Mailing List

From: Ganesh Kamath (gkamath9173_at_gmail.com)
Date: Fri Sep 07 2012 - 09:57:39 CDT

Hi Folks,
  I have a system of polymer in water comprising around 440 A3 box or
equivalent to ~8-9 million atoms.
For memory reduction on the master node, I was told to generate a .js file
instead of psf file.

http://www.ks.uiuc.edu/Research/namd/wiki/?NamdMemoryReduction

If using a js file, add the
"usePluginIO<http://www.ks.uiuc.edu/Research/namd/wiki/index.cgi?PluginIO>yes"
field and change your filename accordingly.

Can someone please help me out. How do I use this plugin?

thanks for your time.

ganesh