VMD-L Mailing List

From: Margaret.Cheung_at_mail.uh.edu
Date: Fri Jul 25 2008 - 18:41:40 CDT

Thank you!
Sincerely,
Margaret
----- Original Message -----
From: Peter Freddolino <beakerbreaker_at_gmail.com>
Date: Friday, July 25, 2008 5:31 pm
Subject: Re: vmd-l: question about using namdenergy.tcl with vmd -dispdev text -e *.tcl
To: mscheung_at_uh.edu
Cc: vmd-l_at_ks.uiuc.edu

> Hi Margaret,
> you can access the text interface of namdenergy in any vmd
> installation;
> just use
> package require namdenergy
> and then run namdenergy as described on the manual page
> (http://www.ks.uiuc.edu/Research/vmd/plugins/namdenergy/).
> You can also type
> namdenergy
> with no arguments to get a summary of usage. All of the gui
> options have
> equivalents in the command line version.
> Best,
> Peter
>
> Margaret S. Cheung wrote:
> > Hi VMD users and wizards,
> >
> > I am trying to extract some energy information from a large
> dcd at
> > remote computing resources that discourage graphic display.
> >
> > I have this namdenergy.tcl scripted downloaded from vmd
> website. I
> > know how to use it in the presence of vmd tk console (source
> > namdenergy.tcl). But since the graphic vmd mode is not
> available, how
> > I can  integrate it to vmd -dispdev text -e *.tcl? Not to
> mention that
> > I have several flags needed to feed to namdenergy. I looked up
> the
> > vmd-L and didn't see similar requests and solutions. Please
> help.
> > Thank you very much.
> > Sincerely,
> > Margaret
> >
>

Margaret S. Cheung
Assistant Professor
Department of Physics
University of Houston
Houston, TX, 77204-5005
Tel: 713-743-8358
http://www.phys.uh.edu/~mscheung/