From: Shirin Awasthi (
Date: Sun Jan 11 2009 - 22:40:48 CST

i have a protein and a ligand which i have already docked into it using GOLD
both load as separate files in the VMD window.
my problem is how to complex them together so that the output i have is a
single pdb file comprising the protein and transformed ligand coordinates
docked into it.
is there any command to do this?

Shirin Awasthi
M.Tech (CSB)
Center for Computational Biology and Bioinformatics,
School of Information Technology,
Jawaharlal Nehru University,
New Delhi,