VMD-L Mailing List
From: Aaron Oakley (aarono_at_uow.edu.au)
Date: Sun Jan 08 2012 - 18:30:08 CST
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Greetings all,
I'd like to perform an ILS calculation on a small protein
that undergoes significant rotation during a 6 ns simulation.
As I understand it, the tcl script produced by VMD corrects for
molecule translation but not rotation.
If I use the new collective variables facility in NAMD to prevent
rotation of the molecule, will this bias the calculation in an unacceptable
way?
Thanks,
a++
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