VMD-L Mailing List

From: Prevost Martine (mprevost_at_ulb.ac.be)
Date: Thu Jan 25 2007 - 04:41:37 CST

Hello,

I would like to compute the angle between each carbonyl backbone group and the largest inertia axis of a protein. Would it be possible to do that with available scripts in vmd ? If not could you suggest me ways to perform this type of calculation. I've seen that I could get the principal axes through the package orient but then ... Thank you very much.

Best,

Martine.
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  Martine Prévost
  Structure et Fonction des Membranes biologiques
  et
  Bioinformatique génomique et structurale,
  CP 206/2
  Université Libre de Bruxelles
  Bld du Triomphe
  B-1050 Bruxelles
  Belgium
  Phone : 32-2-650 2049
  Fax : 32-2-650 5382
  E-mail: mprevost_at_ulb.ac.be
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