VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Wed Dec 02 2009 - 22:41:17 CST

Hi,
  At present VMD itself doesn't have a mechanism for masking
volumetric data, but this is something I plan to add to
future versions as I redesign some of the volumetric processing
infrastructure to be more flexible.

Cheers,
  John Stone
  vmd_at_ks.uiuc.edu

On Wed, Dec 02, 2009 at 10:55:58PM -0500, pebblepeddle_at_gmail.com wrote:
> Hi
>
> Does anyone know if VMD can do mask operations on ccp4 format file (as in coot)?
>
> What I want is to display a part of the whole electron density map as
> read in ccp4 format.
>
> For example, mask or delete experimental crystal electron density for
> protein and water and only show that for ligand.
>
> Many thanks 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
Email: johns_at_ks.uiuc.edu                 Phone: 217-244-3349
  WWW: http://www.ks.uiuc.edu/~johns/      Fax: 217-244-6078