VMD-L Mailing List

From: Stéphane Teletchéa (steletch_at_biomedicale.univ-paris5.fr)
Date: Tue Jun 04 2002 - 06:39:20 CDT

Le Mardi 4 Juin 2002 11:08, Raik Grunberg a écrit :
> Hi VMDevelopers,
>
> perhaps I stumbled accross a small bug here:
>
> in previous vmd versions one could use the "parm and crd" file filter to
> display both amber 6 trajectories and restart files. Vmd 1.7.1 still
> handles amber6-generated trajectories (i.e. topology and crd file) without
> problems but something goes wrong when opening restart files (parm and
> rst). The atoms are there but the connectivity is wrong.
>
> Best regards!
> Raik
>

You need to :
1 - remove the first line of the parm file
or
2 - create your trajectory with the option nobox in ptraj.

Stef