VMD-L Mailing List

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About this archive

Starting: Thu Dec 19 1996 - 11:40:41 CST
Ending: Fri May 25 2012 - 14:34:06 CDT

John Stone (Thu Oct 13 2011 - 10:33:26 CDT)

denilson_at_dqi.ufla.br (Mon Oct 03 2011 - 11:18:01 CDT)

Axel Kohlmeyer (Mon Jan 03 2011 - 05:04:23 CST)

Kirby Vandivort (Tue Dec 07 2010 - 11:15:01 CST)

JC Gumbart (Thu Oct 07 2010 - 23:19:28 CDT)

Rogan Carr (Sun Sep 12 2010 - 18:19:09 CDT)

Edelmiro Moman (Sat Aug 21 2010 - 04:03:35 CDT)

Ajasja LjubetiÄ (Sat Aug 21 2010 - 02:14:19 CDT)

John Stone (Fri Aug 20 2010 - 14:05:26 CDT)

Joshua Adelman (Mon Mar 15 2010 - 19:56:04 CDT)

JC Gumbart (Wed Mar 10 2010 - 23:26:30 CST)

JC Gumbart (Wed Mar 10 2010 - 23:00:43 CST)

Edelmiro Moman (Mon Mar 08 2010 - 14:05:52 CST)

Olaf Lenz (Tue Jan 05 2010 - 09:12:28 CST)

Axel Kohlmeyer (Tue Jan 05 2010 - 08:12:16 CST)

Prathit Chatterjee (Tue Jan 05 2010 - 07:34:39 CST)

jani sahil (Tue Jan 05 2010 - 00:49:00 CST)

Prathit Chatterjee (Mon Jan 04 2010 - 23:22:16 CST)

John Stone (Fri Nov 13 2009 - 08:19:04 CST)

J. Rui Rodrigues (Fri Nov 13 2009 - 06:13:52 CST)

John Stone (Thu Sep 10 2009 - 11:10:05 CDT)

John Stone (Wed Sep 09 2009 - 14:14:08 CDT)

John Stone (Wed Sep 09 2009 - 14:14:58 CDT)

Roman Petrenko (Wed Sep 09 2009 - 14:09:35 CDT)

Axel Kohlmeyer (Tue Apr 14 2009 - 07:25:54 CDT)

Taufik Al-Sarraj (Mon Mar 16 2009 - 17:01:26 CDT)

John Stone (Tue Mar 03 2009 - 15:42:19 CST)

Irene Newhouse (Tue Mar 03 2009 - 15:37:48 CST)

John Stone (Tue Mar 03 2009 - 14:58:22 CST)

Irene Newhouse (Tue Mar 03 2009 - 14:55:11 CST)

John Stone (Fri Feb 27 2009 - 18:03:40 CST)

Axel Kohlmeyer (Fri Feb 27 2009 - 14:48:42 CST)

Peter Freddolino (Mon Jan 26 2009 - 06:09:46 CST)

Peter Freddolino (Tue Nov 11 2008 - 22:33:13 CST)

Peter Freddolino (Tue Nov 11 2008 - 22:22:28 CST)

Anirban Ghosh (Tue Nov 11 2008 - 22:27:15 CST)

Peter Freddolino (Tue Nov 11 2008 - 22:07:42 CST)

Anirban Ghosh (Tue Nov 11 2008 - 21:59:01 CST)

Peter Freddolino (Tue Nov 11 2008 - 10:30:47 CST)

Peter Freddolino (Tue Oct 21 2008 - 07:21:42 CDT)

Axel Kohlmeyer (Sun Sep 28 2008 - 13:15:18 CDT)

Kirby Vandivort (Thu Jul 10 2008 - 11:05:33 CDT)

Abu Naser (Thu Jul 10 2008 - 11:23:19 CDT)

Peter Freddolino (Mon Jan 28 2008 - 08:56:39 CST)

Axel Kohlmeyer (Fri May 25 2007 - 11:00:48 CDT)

Peter Freddolino (Thu May 17 2007 - 11:21:41 CDT)

Axel Kohlmeyer (Thu May 03 2007 - 17:00:48 CDT)

morten østergaard jensen (Tue Aug 22 2006 - 10:02:19 CDT)

Axel Kohlmeyer (Tue Aug 22 2006 - 07:46:27 CDT)

Peter Freddolino (Tue Aug 22 2006 - 07:36:35 CDT)

John Stone (Tue Aug 08 2006 - 11:08:08 CDT)

John Stone (Wed Jun 21 2006 - 13:21:42 CDT)

snoze pa (Tue Jun 06 2006 - 17:47:34 CDT)

John Stone (Tue Jun 06 2006 - 12:59:57 CDT)

John Stone (Wed Mar 01 2006 - 14:56:46 CST)

John Stone (Fri Oct 14 2005 - 14:46:53 CDT)

Chang, Christopher (Mon Jul 18 2005 - 16:32:09 CDT)

Blake Charlebois (Mon Jul 18 2005 - 16:26:56 CDT)

John Stone (Tue Jun 21 2005 - 17:23:53 CDT)

Jim Phillips (Thu Apr 07 2005 - 11:10:45 CDT)

John Stone (Wed Apr 06 2005 - 15:05:52 CDT)

John Stone (Mon Feb 28 2005 - 12:12:13 CST)

John Stone (Mon Feb 28 2005 - 10:13:25 CST)

John Stone (Mon Feb 21 2005 - 12:05:33 CST)

John Stone (Thu Feb 17 2005 - 16:42:44 CST)

Brian Bennion (Tue Dec 14 2004 - 12:47:07 CST)

Charles McCallum (Wed Nov 17 2004 - 22:21:11 CST)

John Stone (Mon Sep 20 2004 - 13:26:17 CDT)

John Stone (Mon Jul 05 2004 - 14:31:03 CDT)

John Stone (Mon Jul 05 2004 - 13:57:46 CDT)

John Stone (Wed Jun 30 2004 - 17:16:57 CDT)

John Stone (Sat Apr 24 2004 - 15:41:39 CDT)

John Stone (Mon Apr 12 2004 - 21:59:15 CDT)

John Stone (Wed Nov 19 2003 - 10:36:55 CST)

John Stone (Wed Nov 19 2003 - 10:22:01 CST)

Eugen Leitl (Wed Nov 19 2003 - 04:13:28 CST)

John Stone (Thu Nov 06 2003 - 09:26:23 CST)

! Obtain degrees from Prestigious non-accredite dUniversities
- 1(484)993-7152 Marty (Sat Jun 23 2007 - 01:45:28 CDT)
"animate readdel"? (was: multiple automated calls to NAMD)
- John Stone (Tue Jun 21 2005 - 17:42:11 CDT)
- nordgren_at_sas.upenn.edu (Wed Jun 15 2005 - 08:15:10 CDT)
- nordgren_at_sas.upenn.edu (Tue Jun 14 2005 - 03:09:48 CDT)
"can not find channel named ...
- Axel Kohlmeyer (Wed Jul 28 2010 - 06:55:13 CDT)
- Ajasja LjubetiÄ (Wed Jul 28 2010 - 05:04:28 CDT)
- Asmaa Elsheshiny (Wed Jul 28 2010 - 04:14:31 CDT)
"cartoon" failing to show secondary structure
- Kenley Barrett (Fri Dec 15 2006 - 11:27:30 CST)
- John Stone (Fri Dec 15 2006 - 11:13:05 CST)
- Kenley Barrett (Thu Dec 14 2006 - 18:31:09 CST)
"cartoon" failing to show secondary structure--more info
- John Stone (Fri Dec 15 2006 - 14:08:59 CST)
- Kenley Barrett (Fri Dec 15 2006 - 12:39:54 CST)
"Determine file type" list is far too long...
- John Stone (Mon May 25 2009 - 23:09:16 CDT)
- Axel Kohlmeyer (Sun May 24 2009 - 11:40:33 CDT)
- Axel Kohlmeyer (Sun May 24 2009 - 08:52:35 CDT)
- Rob (Sun May 24 2009 - 04:45:30 CDT)
"Distributed Cavelib" VMD port
- John Stone (Fri Sep 12 2003 - 11:15:00 CDT)
- Romaric David (Fri Sep 12 2003 - 09:01:33 CDT)
"Draw" different things in different frames
- Axel Kohlmeyer (Sun Apr 17 2005 - 03:07:11 CDT)
- Kiniu Wong (Sat Apr 16 2005 - 20:16:02 CDT)
"get {x y z}" returns single value
- Olaf Lenz (Fri Feb 23 2007 - 11:16:30 CST)
- Axel Kohlmeyer (Fri Feb 23 2007 - 11:10:04 CST)
- Ivan Degtyarenko (Fri Feb 23 2007 - 10:18:16 CST)
"Hands-On" Workshop on Computational Biophysics
- David Brandon (Tue Mar 08 2005 - 11:54:35 CST)
"Hands-On" Workshop on Computational Biophysics, July 6-10 and August 10-14, 2009
- TCBG Workshop (Thu Feb 05 2009 - 15:52:29 CST)
"Hands-On" Workshop on Computational Biophysics, March 21-25, 2011, Atlanta, GA, USA
- David Brandon (Tue Dec 21 2010 - 14:38:16 CST)
"Hands-On" Workshop on Computational Biophysics, November 1-5, 2010 & November 29-December 3, 2010 in Urbana, IL
- TCBG Workshops (Thu Aug 12 2010 - 17:10:53 CDT)
"Lines" representation does not show
- John Stone (Fri Sep 25 2009 - 10:55:46 CDT)
- Martin Lepsik (Fri Sep 25 2009 - 09:06:46 CDT)
- John Stone (Thu Sep 24 2009 - 09:08:57 CDT)
- Martin Lepsik (Thu Sep 24 2009 - 05:16:09 CDT)
- John Stone (Wed Sep 23 2009 - 11:03:05 CDT)
- Martin Lep¹ík (Wed Sep 23 2009 - 10:49:33 CDT)
"Lines" representation does not show:remote
- Martin Lepsik (Fri Sep 25 2009 - 09:07:41 CDT)
"measure fit" inaccuracy?
- John Stone (Fri Jun 11 2004 - 10:16:03 CDT)
- Justin Gullingsrud (Fri Jun 11 2004 - 10:07:54 CDT)
- Jérôme Hénin (Fri Jun 11 2004 - 09:34:45 CDT)
- John Stone (Fri Jun 11 2004 - 09:04:43 CDT)
- Jérôme Hénin (Fri Jun 11 2004 - 02:48:49 CDT)
"measure fit" problem
- Yi Shang (Wed Sep 09 2009 - 13:31:17 CDT)
- John Stone (Wed Sep 09 2009 - 13:34:18 CDT)
"mol scaleminmax auto" vs. "mol scaleminmax $min_val $max_val"
- Nadja Lederer (Mon Aug 03 2009 - 06:21:42 CDT)
"no CUDA accelerator devices available", Nvidia GeForce 9600 GT card
- Low Soo Mei (Thu Jun 25 2009 - 00:41:15 CDT)
- John Stone (Wed Jun 24 2009 - 22:17:52 CDT)
- Low Soo Mei (Wed Jun 24 2009 - 21:44:35 CDT)
"non-grid" volumetric data
- Axel Kohlmeyer (Sat Mar 19 2011 - 17:53:16 CDT)
- Xiaogang Wang (Sat Mar 19 2011 - 17:15:48 CDT)
- Axel Kohlmeyer (Sat Mar 19 2011 - 04:32:27 CDT)
- Xiaogang Wang (Sat Mar 19 2011 - 01:23:32 CDT)
"Not all atoms have unique coordinates"
- Nitin Bhardwaj (Fri Jan 05 2007 - 12:31:18 CST)
"nucleic" selection
- Andrew Dalke (Wed Nov 12 2003 - 13:29:15 CST)
- Vlad Cojocaru (Wed Nov 12 2003 - 10:45:47 CST)
- Vlad Cojocaru (Wed Nov 12 2003 - 09:17:56 CST)
- Vlad Cojocaru (Wed Nov 12 2003 - 04:55:26 CST)
"pbcwithin" keyword
- Axel Kohlmeyer (Thu Feb 19 2009 - 11:00:48 CST)
- Thomas Evangelidis (Thu Feb 19 2009 - 09:29:37 CST)
"Pick item mode" inactive in OSX bundle ?
- John Stone (Thu Oct 03 2002 - 08:47:32 CDT)
- Christian Simon (Thu Oct 03 2002 - 07:44:53 CDT)
"same as" failing?
- Luis Gracia (Mon Oct 25 2004 - 14:45:54 CDT)
- John Stone (Mon Oct 25 2004 - 13:49:14 CDT)
- Luis Gracia (Mon Oct 25 2004 - 13:42:37 CDT)
"Save coordinates..." silently overwrites existing files...
- Axel Kohlmeyer (Mon Jun 15 2009 - 11:29:10 CDT)
- Rob (Mon Jun 15 2009 - 10:25:10 CDT)
"Selection not understood"
- John Stone (Fri Jul 16 2004 - 13:18:59 CDT)
- Olaf Lenz (Fri Jul 16 2004 - 09:47:04 CDT)
"Sorry, this version VMD was compiled with Python support disabled"
- John Stone (Wed Feb 04 2009 - 16:31:09 CST)
- Maxim Paliy (Wed Feb 04 2009 - 09:19:49 CST)
"tight" selection
- John Stone (Tue Jun 06 2006 - 13:14:42 CDT)
"truncate_trajectory" a new plugin
- Èùìáò Åõáããåëéäçò (Fri Sep 14 2007 - 10:01:23 CDT)
"Unable to create OpenGL window"
- Axel Kohlmeyer (Tue Jul 18 2006 - 15:41:35 CDT)
- César Dp (Tue Jul 18 2006 - 15:20:55 CDT)
"which files to make a spatial grid?" => Bug for list command?
- John Stone (Tue Apr 17 2007 - 13:11:52 CDT)
- Axel Kohlmeyer (Tue Apr 17 2007 - 07:25:11 CDT)
- Philipp Schoen1 (Tue Apr 17 2007 - 07:03:46 CDT)
# of waters limit
- Justin Gullingsrud (Tue Mar 22 2005 - 18:09:26 CST)
- dimka (Tue Mar 22 2005 - 15:19:51 CST)
$64k/yr hpc post-doc@lanl
- Kevin Y. Sanbonmatsu (Sun Feb 12 2006 - 19:05:34 CST)
%-sign shortcut for mouse->force->atom not working
- Axel Kohlmeyer (Sun May 06 2012 - 14:01:37 CDT)
- Christopher Neale (Sun May 06 2012 - 12:21:38 CDT)
'gopython' Tkinter and Numeric Python error
- John Stone (Wed Jan 30 2008 - 10:29:49 CST)
- brmorgan_at_clarku.edu (Mon Jan 28 2008 - 09:55:36 CST)
'Hands-On' Workshop on Computational Biophysics using VMD and NAMD, February 11-15, 2012 in Urbana, Illinois
- David Brandon (Thu Nov 17 2011 - 13:53:59 CST)
'Hands-On' Workshop on Computational Biophysics using VMD and NAMD, October 17-21, 2011, Bremen, Germany
- David Brandon (Fri Jul 29 2011 - 14:15:06 CDT)
'SURF' representation problem
- John Stone (Sun Apr 08 2007 - 13:47:34 CDT)
- dimka (Sun Apr 08 2007 - 13:22:11 CDT)
- John Stone (Thu Mar 29 2007 - 18:26:50 CDT)
- hl332_at_drexel.edu (Thu Mar 29 2007 - 18:09:43 CDT)
- John Stone (Thu Mar 29 2007 - 16:10:43 CDT)
- hl332_at_drexel.edu (Thu Mar 29 2007 - 16:04:02 CDT)
'topology' command crashes vmd 1.8 (LINUX)
- John Stone (Wed Mar 05 2003 - 09:57:56 CST)
- Patrick Ladam (Wed Mar 05 2003 - 06:22:43 CST)
'within' command in VMD
- Axel Kohlmeyer (Sun May 11 2008 - 13:22:18 CDT)
- John Stone (Sun May 11 2008 - 13:12:48 CDT)
- Neelanjana Sengupta (Sun May 11 2008 - 12:35:35 CDT)
- John Stone (Sun May 11 2008 - 10:54:53 CDT)
- Axel Kohlmeyer (Sun May 11 2008 - 03:35:53 CDT)
- Neelanjana Sengupta (Sun May 11 2008 - 02:04:57 CDT)
'wrap' any kind of solvent
- Jim Phillips (Mon Dec 03 2001 - 11:14:50 CST)
- Reuter Nathalie (Mon Dec 03 2001 - 03:20:45 CST)
(); [Fwd: PET force field & topolgy files etc.]
- Peter Freddolino (Thu Dec 28 2006 - 15:46:31 CST)
- wolfinbm_at_uci.edu (Wed Dec 27 2006 - 14:23:22 CST)
(forwarded) cylinder drawing bug in 1.7b1 on NT?
- John Stone (Fri Jul 20 2001 - 10:20:06 CDT)
(forwarded) Modifying a Tcl script
- John Stone (Fri Jul 20 2001 - 10:17:04 CDT)
(fwd) vmd 1.7b1 sequence window disappeares
- John Stone (Mon Jul 23 2001 - 09:59:20 CDT)
(Minnesota Supercomputing Institute Install) VMD 1.9 beta 3 posted for download...
- nlabello (Tue Mar 08 2011 - 16:00:25 CST)
(my) problems using molefacture dihedral
- Peter Freddolino (Sat Apr 02 2011 - 19:05:13 CDT)
- Francesco Pietra (Sat Apr 02 2011 - 15:36:21 CDT)
(no subject)
- rainy908_at_yahoo.com (Thu Apr 12 2012 - 20:54:30 CDT)
- rainy908_at_yahoo.com (Fri Mar 23 2012 - 07:55:48 CDT)
- rainy908_at_yahoo.com (Thu Mar 22 2012 - 17:42:38 CDT)
- rainy908_at_yahoo.com (Thu Mar 22 2012 - 15:06:33 CDT)
- vaneeta bala (Fri Jan 20 2012 - 01:11:06 CST)
- hanif mahboobi (Tue Nov 22 2011 - 21:55:31 CST)
- hanif mahboobi (Tue Nov 22 2011 - 18:19:50 CST)
- niaz poorgholami (Fri Nov 11 2011 - 22:02:25 CST)
- denilson_at_dqi.ufla.br (Thu Oct 06 2011 - 15:12:44 CDT)
- denilson_at_dqi.ufla.br (Mon Oct 03 2011 - 08:56:08 CDT)
- Sibel Cakan (Mon Jan 03 2011 - 04:15:23 CST)
- Diehl, Alex (NIH/NCI) [V] (Tue Dec 07 2010 - 14:06:41 CST)
- Olimpia Popko (Tue Dec 07 2010 - 05:08:50 CST)
- Kei Sit (Thu Oct 07 2010 - 21:03:31 CDT)
- Axel Kohlmeyer (Sun Sep 12 2010 - 12:33:25 CDT)
- ³Ì²ýÀû (Sun Sep 12 2010 - 11:12:01 CDT)
- Janani.S (Fri Aug 20 2010 - 22:39:10 CDT)
- yan zhang (Fri Aug 20 2010 - 03:54:47 CDT)
- Irene Newhouse (Mon Mar 29 2010 - 15:12:41 CDT)
- Roshan Tasgaonkar (Mon Mar 15 2010 - 18:07:34 CDT)
- Roshan Tasgaonkar (Wed Mar 10 2010 - 22:55:31 CST)
- Roshan Tasgaonkar (Mon Mar 08 2010 - 12:21:08 CST)
- Francesco Pietra (Fri Nov 13 2009 - 03:23:21 CST)
- Roshan Tasgaonkar (Tue Sep 08 2009 - 20:48:01 CDT)
- zizi moradi (Sun Apr 19 2009 - 08:55:44 CDT)
- Narasimhan LOGANATHAN (Tue Apr 14 2009 - 04:33:39 CDT)
- Crowley, Michael (Sun Apr 05 2009 - 00:48:58 CDT)
- Leonhard Henkes (Mon Mar 09 2009 - 07:08:32 CDT)
- Irene Newhouse (Fri Feb 27 2009 - 14:08:30 CST)
- Andres Morales N (Mon Jan 26 2009 - 14:37:40 CST)
- gurunath katagi (Mon Jan 26 2009 - 03:19:30 CST)
- Lawrence Wickert (Sat Nov 15 2008 - 20:19:35 CST)
- Anirban Ghosh (Tue Nov 11 2008 - 07:17:04 CST)
- JONATHAN BLACK (Tue Oct 21 2008 - 04:16:29 CDT)
- studier_at_life.illinois.edu (Sat Sep 27 2008 - 16:22:10 CDT)
- Abu Naser (Thu Jul 10 2008 - 10:43:17 CDT)
- paquotau_at_loria.fr (Wed May 21 2008 - 08:12:51 CDT)
- politr_at_huji.ac.il (Tue Apr 29 2008 - 05:49:41 CDT)
- mbyr8097_at_mail.usyd.edu.au (Mon Jan 28 2008 - 19:02:49 CST)
- Steve Seibold (Mon Jan 28 2008 - 08:39:37 CST)
- Syed Tarique Moin (Mon Nov 26 2007 - 06:25:08 CST)
- ZT Yew (Wed Oct 17 2007 - 18:26:24 CDT)
- AustinSmall_at_comcast.net (Thu Jul 26 2007 - 16:06:23 CDT)
- Lechuga, Javier (Fri May 25 2007 - 08:10:27 CDT)
- Lechuga, Javier (Thu May 17 2007 - 09:40:07 CDT)
- lanhua (Thu May 03 2007 - 16:30:24 CDT)
- Stephen M. Dutz (Wed Feb 21 2007 - 15:40:45 CST)
- Prevost Martine (Thu Jan 25 2007 - 04:41:37 CST)
- Lechuga, Javier (Tue Aug 22 2006 - 06:12:20 CDT)
- Hai-Jun Su (Tue Aug 08 2006 - 10:30:27 CDT)
- Hai-Jun Su (Wed Jun 21 2006 - 12:22:29 CDT)
- John Stone (Tue Jun 13 2006 - 11:47:30 CDT)
- Zara Sands (Mon Jun 12 2006 - 06:36:34 CDT)
- Sam Ansari (Tue Jun 06 2006 - 06:13:16 CDT)
- ziemys_at_ecr6.ohio-state.edu (Mon May 08 2006 - 09:41:21 CDT)
- Naser, Md Abu (Wed Mar 01 2006 - 14:17:10 CST)
- Naser, Md Abu (Fri Oct 14 2005 - 14:12:44 CDT)
- Yifat Brill (Tue Sep 27 2005 - 07:03:33 CDT)
- Demetrios Braddock (Thu Sep 15 2005 - 18:40:47 CDT)
- Sale, Kenneth L (Mon Jul 18 2005 - 14:48:01 CDT)
- Simon Whitehead (Tue Jun 14 2005 - 05:34:53 CDT)
- ËïÍ¢ (Wed Apr 06 2005 - 08:58:13 CDT)
- matteo.pennestri_at_virgilio.it (Thu Feb 24 2005 - 09:11:19 CST)
- matteo.pennestri_at_virgilio.it (Wed Feb 23 2005 - 04:44:47 CST)
- James Stevens (Fri Feb 18 2005 - 14:24:19 CST)
- Francis Reyes (Thu Feb 17 2005 - 16:33:15 CST)
- dtp3+_at_pitt.edu (Mon Jan 03 2005 - 14:33:55 CST)
- Eunice Ramirez Melendez (Mon Dec 13 2004 - 19:20:55 CST)
- Paul Whitford (Wed Nov 17 2004 - 19:01:11 CST)
- mdcooper (Mon Sep 20 2004 - 13:14:02 CDT)
- Karunesh Arora (Thu Jul 29 2004 - 10:09:40 CDT)
- ying xiong (Thu Jul 01 2004 - 05:57:28 CDT)
- Sardiu, Mihaela (NIH/NLM/NCBI) (Wed Jun 30 2004 - 17:28:42 CDT)
- Sardiu, Mihaela (NIH/NLM/NCBI) (Wed Jun 30 2004 - 17:08:09 CDT)
- Heshe Peshkin (Tue Jun 29 2004 - 14:58:01 CDT)
- Andrew Watts (Fri Apr 23 2004 - 15:26:37 CDT)
- Yang Yang (Fri Apr 16 2004 - 21:59:41 CDT)
- Yang Yang (Thu Apr 15 2004 - 13:19:11 CDT)
- Ajith Gunaratne (Sun Apr 11 2004 - 23:36:05 CDT)
- Jerry Ebalunode (Fri Mar 05 2004 - 23:09:07 CST)
- B $B6Q (Mon Feb 16 2004 - 19:44:43 CST)
- Ioana Cozmuta (Mon Dec 08 2003 - 18:10:49 CST)
- Alexandre Vakhrouchev (Wed Nov 19 2003 - 02:11:14 CST)
- Dongsheng Zhang (Tue Nov 18 2003 - 17:24:20 CST)
- Alexandre Vakhrouchev (Thu Nov 06 2003 - 06:43:18 CST)
- J. Rui Rodrigues (Fri Oct 17 2003 - 11:46:41 CDT)
- Tsu-Fan Cheng (Wed Sep 17 2003 - 22:02:23 CDT)
- Gemma Kinsella (Tue Jun 24 2003 - 10:11:04 CDT)
- Gemma Kinsella (Tue Jun 24 2003 - 10:07:26 CDT)
- Dongsheng Zhang (Wed May 21 2003 - 23:13:52 CDT)
- silvya (Thu Apr 10 2003 - 17:55:11 CDT)
- Markus Laub (Mon Mar 31 2003 - 06:31:44 CST)
- chandran karunakaran (Thu Mar 20 2003 - 13:56:44 CST)
- chandran karunakaran (Thu Mar 20 2003 - 13:55:13 CST)
- César Filipe Barbosa Ribeiro (Sun Dec 02 2001 - 13:50:44 CST)
- prachi singh (Mon Jun 05 2000 - 08:26:51 CDT)
(UNCLASSIFIED)
- John Stone (Fri Jan 04 2008 - 13:29:49 CST)
- Paul, Kristian (Cont, ARL/WMRD) (Fri Jan 04 2008 - 13:22:28 CST)
- Balu, Radhakrishnan (Cont, ARL/WMRD) (Tue Nov 27 2007 - 09:18:18 CST)
(xterm: Command not found) error
- John Stone (Wed Apr 12 2006 - 14:29:07 CDT)
- Jorge Hernandez Fernandez (Wed Apr 12 2006 - 14:14:58 CDT)
-samples flag of measure sasa
- John Stone (Fri Jun 18 2010 - 14:22:19 CDT)
- Edward Lyman (Fri Jun 18 2010 - 14:15:10 CDT)
- John Stone (Fri Jun 18 2010 - 13:10:08 CDT)
- Edward Lyman (Thu Jun 17 2010 - 11:47:34 CDT)
.car or .xyz output
- John Stone (Fri Aug 05 2011 - 16:15:47 CDT)
- winardi, erik (Wed Aug 03 2011 - 19:39:47 CDT)
.COOR TO PDB FILE
- Babban Mia (Sat Aug 13 2011 - 01:11:48 CDT)
.cshrc error prevents VMD working on OSX10.3.3??? or something else???
- John Stone (Tue Mar 23 2004 - 10:54:22 CST)
- Dr. Daniel James White PhD (Tue Mar 23 2004 - 03:36:59 CST)
.grd and .srf
- vivek sharma (Mon Sep 19 2005 - 00:09:52 CDT)
- John Stone (Fri Sep 16 2005 - 16:37:21 CDT)
- John Stone (Fri Sep 16 2005 - 16:08:13 CDT)
- John Stone (Fri Sep 16 2005 - 10:25:47 CDT)
- vivek sharma (Fri Sep 16 2005 - 01:52:45 CDT)
.gro format to .pqr format
- Axel Kohlmeyer (Wed Jun 01 2011 - 10:52:24 CDT)
- Mona Habibi (Wed Jun 01 2011 - 10:17:20 CDT)
.pdb file from XMD
- John Stone (Thu Nov 02 2006 - 10:45:49 CST)
- Alexandr Isayev (Thu Nov 02 2006 - 09:18:20 CST)
- 04215287d_at_polyu.edu.hk (Thu Nov 02 2006 - 08:39:44 CST)
.pdbqt file type
- John Stone (Thu Mar 17 2011 - 09:56:08 CDT)
- Francesco Pietra (Thu Mar 17 2011 - 02:38:19 CDT)
- Francesco Pietra (Wed Mar 16 2011 - 12:15:51 CDT)
.psf and .params files for IMD
- John Stone (Thu Dec 11 2003 - 10:15:30 CST)
- Harit Jani (Wed Dec 10 2003 - 19:08:02 CST)
.psf for porphyrin
- javier.vallejos_at_correo.usach.cl (Sat Oct 21 2006 - 18:11:19 CDT)
.trr files slow to load
- Axel Kohlmeyer (Mon May 07 2012 - 12:55:52 CDT)
- John Stone (Mon May 07 2012 - 12:40:13 CDT)
- patrick wintrode (Mon May 07 2012 - 12:00:19 CDT)
.vmdrc
- John Stone (Thu Jun 22 2006 - 15:17:31 CDT)
- Brian Kidd (Wed Jun 21 2006 - 18:26:48 CDT)
.xsf triclinic cell contents
- Axel Kohlmeyer (Fri Nov 19 2010 - 14:49:31 CST)
- Axel Kohlmeyer (Thu Nov 18 2010 - 15:41:28 CST)
- Erin L. (Thu Nov 18 2010 - 14:23:06 CST)
.xst file disagrees with pbctools/.dcd file - what are the limitations of pbctools?
- Olaf Lenz (Thu Jul 16 2009 - 01:14:37 CDT)
- John Stone (Wed Jul 15 2009 - 14:32:57 CDT)
- Patrick Kiley (Wed Jul 15 2009 - 05:05:01 CDT)
.xyz bond
- Axel Kohlmeyer (Mon Feb 20 2012 - 06:07:02 CST)
- winardi, erik (Mon Feb 20 2012 - 05:15:05 CST)
.XYZ File format
- Ramesh K. Sistla (Mon Jun 23 2003 - 06:10:30 CDT)
- Shantipriya Tenneti (Fri Jun 20 2003 - 18:04:42 CDT)
.XYZ File format (DL_POLY conversion)
- John Stone (Mon Jun 23 2003 - 09:37:34 CDT)
.xyz file, namelist index too large error
- John Stone (Thu Jun 07 2007 - 11:11:43 CDT)
- Axel Kohlmeyer (Wed Jun 06 2007 - 19:00:56 CDT)
- Erkan Tuzel (Wed Jun 06 2007 - 19:39:48 CDT)
.xyz to .dcd using catdcd
- John Stone (Fri Apr 20 2007 - 15:36:36 CDT)
- John Stone (Tue Apr 17 2007 - 12:48:12 CDT)
- Ekta Khurana (Mon Apr 16 2007 - 21:31:42 CDT)
- Peter Freddolino (Mon Apr 16 2007 - 21:31:32 CDT)
- Axel Kohlmeyer (Mon Apr 16 2007 - 19:51:35 CDT)
- Ekta Khurana (Mon Apr 16 2007 - 14:34:47 CDT)
- Peter Freddolino (Fri Apr 13 2007 - 21:26:57 CDT)
- Ekta Khurana (Fri Apr 13 2007 - 16:08:51 CDT)
0ne of a kind repl1cas
- Sandy Anderson (Thu Apr 03 2008 - 08:19:31 CDT)
1.3b2
- robert austin (Sun Mar 21 1999 - 16:31:34 CST)
- John Stone (Wed Mar 03 1999 - 12:23:29 CST)
- Keith Refson (Wed Mar 03 1999 - 11:51:13 CST)
1.6.1 hotkey problem
- Justin Gullingsrud (Wed May 02 2001 - 15:18:40 CDT)
- Ben Cornett (Wed May 02 2001 - 13:05:47 CDT)
1.8.2beta
- Mike McCallum (Tue Nov 25 2003 - 16:38:38 CST)
1.8.3
- John Stone (Fri Jul 30 2004 - 14:33:35 CDT)
- Daniel B. Faken (Fri Jul 30 2004 - 09:36:52 CDT)
1.8.5: VASP plugin not correct
- Axel Kohlmeyer (Tue Sep 26 2006 - 09:33:45 CDT)
- John Stone (Mon Sep 25 2006 - 21:23:42 CDT)
- Rob (Mon Sep 25 2006 - 17:57:22 CDT)
- Rob (Mon Sep 25 2006 - 17:55:02 CDT)
- Axel Kohlmeyer (Mon Sep 25 2006 - 11:44:23 CDT)
- Rob (Mon Sep 25 2006 - 11:17:10 CDT)
- John Stone (Mon Sep 25 2006 - 09:18:08 CDT)
- Axel Kohlmeyer (Mon Sep 25 2006 - 08:45:26 CDT)
- John Stone (Mon Sep 25 2006 - 07:48:33 CDT)
- Rob (Mon Sep 25 2006 - 07:33:43 CDT)
- John Stone (Mon Sep 25 2006 - 06:23:48 CDT)
- Rob (Mon Sep 25 2006 - 05:45:15 CDT)
- John Stone (Fri Sep 22 2006 - 12:36:44 CDT)
- Rob (Thu Sep 21 2006 - 22:15:06 CDT)
1.8.6 install for Windows OpenGL (Microsoft Windows 2000/XP/Vista (32-bit) using OpenGL)
- John Stone (Sun Apr 08 2007 - 11:26:33 CDT)
- Charles Cleveland (Sun Apr 08 2007 - 08:05:00 CDT)
100% of CPU usage
- John Stone (Wed Sep 07 2005 - 22:22:16 CDT)
- John Stone (Thu Aug 11 2005 - 09:46:14 CDT)
- griadi_at_utalca.cl (Wed Aug 10 2005 - 18:46:46 CDT)
15% off on two watches
- Lora Burgos (Mon Apr 14 2008 - 00:35:59 CDT)
1999 VMD User Survey Report
- John Stone (Mon May 24 1999 - 15:21:56 CDT)
2 Issues in VMD 1.9 beta3
- Axel Kohlmeyer (Fri Mar 11 2011 - 08:14:02 CST)
- hanif mahboobi (Fri Mar 11 2011 - 06:10:30 CST)
2 more quick questions
- John Stone (Wed Jan 22 2003 - 18:18:30 CST)
- phubbard_at_post.its.mcw.edu (Wed Jan 22 2003 - 17:53:54 CST)
2 questions
- Justin Gullingsrud (Wed Jan 09 2002 - 11:23:07 CST)
- Sanjeev B.S. (Mon Jan 07 2002 - 02:43:18 CST)
2 questions about "measure sasa"
- John Stone (Thu Mar 04 2010 - 10:50:11 CST)
- Edward Lyman (Fri Feb 26 2010 - 13:44:59 CST)
- Edward Lyman (Thu Feb 25 2010 - 17:05:37 CST)
- John Stone (Thu Feb 25 2010 - 17:00:31 CST)
- Edward Lyman (Wed Feb 17 2010 - 14:40:53 CST)
20 colors for 20 amino acids!
- John Stone (Wed Jan 22 2003 - 10:13:30 CST)
- Dr Nick (Fri Jan 17 2003 - 11:23:28 CST)
2000 VMD Survey Report is up
- John Stone (Mon Nov 13 2000 - 18:08:44 CST)
2006 VMD user survey in progress
- John Stone (Wed Aug 02 2006 - 18:05:13 CDT)
2011 VMD User Survey results are posted...
- John Stone (Tue Sep 13 2011 - 15:26:21 CDT)
2D Contour plot
- ban arn (Wed Apr 06 2011 - 05:06:09 CDT)
2D projection
- Paul Grayson (Fri Jul 26 2002 - 10:11:58 CDT)
- John Stone (Fri Jul 26 2002 - 09:40:38 CDT)
- Stéphane Teletchéa (Thu Jul 25 2002 - 08:12:15 CDT)
2D RMSD matrix plot
- ban arn (Fri Jul 30 2010 - 05:52:02 CDT)
2D rmsd matrix plot for C-alpha atoms
- ban arn (Wed Jul 28 2010 - 07:55:33 CDT)
- Leonardo Trabuco (Wed Jul 28 2010 - 07:50:53 CDT)
- ban arn (Wed Jul 28 2010 - 08:01:54 CDT)
- Leonardo Trabuco (Wed Jul 28 2010 - 07:59:08 CDT)
- ban arn (Wed Jul 28 2010 - 07:45:52 CDT)
- Leonardo Trabuco (Wed Jul 28 2010 - 06:24:53 CDT)
- ban arn (Wed Jul 28 2010 - 05:50:21 CDT)
2D rmsd plot for C-alpha atoms
- ban arn (Tue Jul 27 2010 - 10:55:48 CDT)
- Leonardo Trabuco (Tue Jul 27 2010 - 11:07:03 CDT)
3 simple questions from a newbie
- Justin Gullingsrud (Mon Jul 23 2001 - 12:34:16 CDT)
- Alexey Kozlenkov (Mon Jul 23 2001 - 07:01:43 CDT)
3-d visualization
- John Stone (Wed May 28 2003 - 12:29:25 CDT)
3D Connexion - Space Navigator (OSX drivers)
- John Stone (Wed Mar 03 2010 - 10:34:03 CST)
- Tibbitt, Jeffrey A. (Tue Mar 02 2010 - 20:24:34 CST)
3D density in the specific part of the simulation box
- Axel Kohlmeyer (Tue May 01 2012 - 07:34:55 CDT)
- fariba taghavi (Tue May 01 2012 - 00:48:35 CDT)
3D glasses with LCD
- John Stone (Wed Jan 20 2010 - 10:08:24 CST)
- Nicolas Floquet (Wed Jan 20 2010 - 06:52:16 CST)
3D Glasses with LCD for VMD
- Nicolas Floquet (Wed Jan 20 2010 - 06:46:11 CST)
3D Graphics
- John Stone (Wed Nov 26 2008 - 11:16:18 CST)
- Jesper Soerensen (Tue Nov 25 2008 - 09:41:12 CST)
- John Stone (Mon Nov 24 2008 - 10:40:21 CST)
- Jesper Soerensen (Thu Nov 20 2008 - 05:50:51 CST)
3D grid data to 2D contour?
- John Stone (Tue Feb 20 2007 - 02:04:57 CST)
- Ivan Degtyarenko (Thu Feb 15 2007 - 15:04:05 CST)
3D pdf problem
- Michael K. Gilson (Mon Aug 31 2009 - 16:22:55 CDT)
- John Stone (Mon Aug 31 2009 - 14:50:33 CDT)
- Michael K. Gilson (Mon Aug 31 2009 - 14:36:49 CDT)
- John Stone (Mon Aug 31 2009 - 11:51:01 CDT)
- Michael K. Gilson (Mon Aug 31 2009 - 06:24:06 CDT)
3D printing
- John Stone (Fri Dec 06 2002 - 16:17:24 CST)
3D protein visualization
- Ignacio Fernández Galván (Tue Nov 09 2010 - 03:05:03 CST)
- Joseph Bylund (Mon Nov 08 2010 - 18:39:42 CST)
- quantrum75 (Mon Nov 08 2010 - 17:31:55 CST)
- John Stone (Mon Nov 08 2010 - 16:33:55 CST)
- John Stone (Mon Nov 08 2010 - 16:31:45 CST)
- Deepangi Pandit (Mon Nov 08 2010 - 15:59:08 CST)
- Ajasja LjubetiÄ (Mon Nov 08 2010 - 15:10:33 CST)
- Axel Kohlmeyer (Mon Nov 08 2010 - 13:22:50 CST)
- quantrum75 (Mon Nov 08 2010 - 12:37:50 CST)
3D Stereo : Windows 7, nVIDIA GEFORCE
- Dipesh Bhattarai (Wed Jan 20 2010 - 16:17:33 CST)
- Jacob Story (Wed Jan 20 2010 - 11:08:38 CST)
- Deepangi Pandit (Wed Jan 20 2010 - 09:39:38 CST)
- John Stone (Wed Jan 20 2010 - 10:05:14 CST)
- John Stone (Tue Jan 19 2010 - 17:57:23 CST)
- Deepangi Pandit (Tue Jan 19 2010 - 17:32:04 CST)
3D visualization
- John Stone (Thu Dec 20 2001 - 14:16:33 CST)
- John Stone (Thu Dec 20 2001 - 14:09:12 CST)
- Stephen Koch (Thu Dec 20 2001 - 13:39:17 CST)
3d viz?
- Dave Schall (Mon Aug 29 2011 - 14:45:17 CDT)
- Dave Schall (Mon Aug 29 2011 - 13:53:05 CDT)
- Axel Kohlmeyer (Mon Aug 29 2011 - 10:37:24 CDT)
- Dave Schall (Mon Aug 29 2011 - 09:28:34 CDT)
3D/stereo hardware recommendations wanted!!!
- John Stone (Fri Jan 14 2005 - 11:29:36 CST)
- Mads Nørregaard-Madsen (Fri Jan 14 2005 - 05:09:54 CST)
- Bogdan Costescu (Fri Jan 14 2005 - 04:51:45 CST)
- Thomas Hedegaard Pedersen (Fri Jan 14 2005 - 02:41:13 CST)
3Dconnexion SpaceNavigator (OS X)
- John Stone (Fri May 27 2011 - 14:54:34 CDT)
- Hans Martin Senn (Wed May 25 2011 - 11:37:51 CDT)
3DConnexion SpaceNavigator in 1.8.7alpha30 on OS X
- John Stone (Wed Jul 30 2008 - 10:38:41 CDT)
- Benjamin Bouvier (Wed Jul 30 2008 - 10:36:17 CDT)
- John Stone (Wed Jul 30 2008 - 10:25:53 CDT)
- Benjamin Bouvier (Wed Jul 30 2008 - 09:37:32 CDT)
3Dconnexion SpaceTraveler works
- Eugen Leitl (Fri Jul 14 2006 - 03:43:21 CDT)
- John Stone (Thu Jul 06 2006 - 13:21:22 CDT)
- Eugen Leitl (Wed Jul 05 2006 - 08:21:00 CDT)
- Eugen Leitl (Wed Jul 05 2006 - 07:54:46 CDT)
3Dsig 2011: Structural Bioinformatics & Computational Biophysics, Vienna, 15-16 July 2011 (abstract deadline May 1st)
- 3D SIG (Fri Apr 15 2011 - 14:38:03 CDT)
3Dsig 2011: Structural Bioinformatics & Computational Biophysics, Vienna, 15-16 July 2011 (abstract deadline May 1st).
- 3D SIG (Wed Mar 23 2011 - 06:15:19 CDT)
4x4 trafo matrices to get "homo-two-protein-complex"
- Peter Freddolino (Mon Jan 12 2009 - 19:30:51 CST)
- Axel Kohlmeyer (Mon Jan 12 2009 - 14:32:27 CST)
- Sebastian Stolzenberg (Mon Jan 12 2009 - 12:42:00 CST)
- Peter Freddolino (Mon Jan 12 2009 - 12:17:53 CST)
- Sebastian Stolzenberg (Mon Jan 12 2009 - 12:09:50 CST)
- Axel Kohlmeyer (Mon Jan 12 2009 - 09:05:41 CST)
- Sebastian Stolzenberg (Sun Jan 11 2009 - 22:58:47 CST)
64 bit NAMD on AIX and CatDCD
- John Stone (Mon Jan 23 2006 - 13:21:14 CST)
- Joshua D. Moore (Sat Jan 21 2006 - 13:22:11 CST)
6DOF controllers
- John Stone (Sat Jan 08 2000 - 21:23:23 CST)
- Eugene Leitl (Sat Jan 08 2000 - 20:42:01 CST)
7th Industrial Fluid Properties Simulation Challenge
- Joshua D. Moore (Wed May 23 2012 - 11:22:23 CDT)
99 Toyotas as low as 2% over invoice
- accutone_at_atlsky.com (Sat Sep 05 1998 - 19:10:53 CDT)
: about complexing protein and ligand!
- Axel Kohlmeyer (Mon Jan 12 2009 - 08:54:21 CST)
- Shirin Awasthi (Sun Jan 11 2009 - 22:40:48 CST)
<please insert a decent subject here next time, thanks>
- Axel Kohlmeyer (Mon Mar 09 2009 - 12:08:49 CDT)
[AMBER] Viewing with VMD bonds set by the "bond" command
- Francesco Pietra (Fri Mar 09 2012 - 01:39:17 CST)
- Francesco Pietra (Thu Mar 08 2012 - 12:27:58 CST)
- Francesco Pietra (Thu Mar 08 2012 - 03:48:48 CST)
[bigdcd.tcl] How to stream output to file
- Justin Gullingsrud (Thu Mar 03 2005 - 10:33:45 CST)
- Sascha Tayefeh (Thu Mar 03 2005 - 04:20:38 CST)
[carlos.simmerling@gmail.com: ACS awards application announcements]
- John Stone (Mon Sep 21 2009 - 12:54:04 CDT)
[carlos.simmerling@gmail.com: ACS awards]
- John Stone (Mon Mar 03 2008 - 20:11:56 CST)
[Contribute] transparent MacOS X icon for VMD
- John Stone (Mon Aug 19 2002 - 11:47:21 CDT)
- MengJuei Hsieh (Fri Aug 16 2002 - 20:54:41 CDT)
- John Stone (Thu Aug 15 2002 - 17:08:44 CDT)
- MengJuei Hsieh (Wed Aug 14 2002 - 19:15:49 CDT)
[Fwd: pdb from trajectory] some clarification
- Peter Freddolino (Wed Jan 24 2007 - 07:55:05 CST)
- _at_huji.ac.il (Wed Jan 24 2007 - 04:37:40 CST)
- John Stone (Tue Jan 23 2007 - 13:45:07 CST)
- Peter Freddolino (Tue Jan 23 2007 - 10:10:59 CST)
- _at_huji.ac.il (Tue Jan 23 2007 - 09:41:49 CST)
[Fwd: problems with manipulating control switches on VMS main menu]
- Axel Kohlmeyer (Fri Oct 31 2008 - 18:05:46 CDT)
- Piotr Cieplak (Fri Oct 31 2008 - 12:57:15 CDT)
[Help] cross-sections
- Axel Kohlmeyer (Sun Apr 04 2010 - 05:27:44 CDT)
- Jervis Chu (Sat Apr 03 2010 - 23:18:54 CDT)
[jrodgers78@gmail.com: outputing secondary structure from timeline]
- Barry Isralewitz (Mon Jan 23 2006 - 15:16:42 CST)
[lammps-users] Initial configurations / topology for LAMMPS
- Anna (Thu Jul 14 2011 - 17:17:56 CDT)
- Axel Kohlmeyer (Thu Jul 14 2011 - 15:29:08 CDT)
[lammps-users] LAMMPS to VMD: lmp2vmd tool
- Axel Kohlmeyer (Sat Jun 13 2009 - 17:00:27 CDT)
- Chetan Mahajan (Wed Jun 10 2009 - 10:00:30 CDT)
- Axel Kohlmeyer (Wed Jun 10 2009 - 08:36:44 CDT)
- Chetan Mahajan (Tue Jun 09 2009 - 13:08:16 CDT)
- Axel Kohlmeyer (Thu May 28 2009 - 10:31:42 CDT)
[lammps-users] MDAnalysis (slightly OT)
- Axel Kohlmeyer (Tue May 27 2008 - 12:54:41 CDT)
[lammps-users] using topotools to view lammps output
- Axel Kohlmeyer (Wed Jun 01 2011 - 08:48:04 CDT)
[linux-elitists] ATI Radeon support (fwd from deejoe@raccoon.com)
- Eugen Leitl (Tue Dec 14 2004 - 03:33:02 CST)
[MMTK] Visualization to an image file (fwd from hinsen@cnrs-orleans.fr)
- Eugen Leitl (Mon Jul 12 2004 - 08:36:58 CDT)
[OT] pdb files with lots of residues
- Justin Gullingsrud (Thu Jan 30 2003 - 09:45:07 CST)
- Jim Phillips (Thu Jan 30 2003 - 09:21:37 CST)
- gianluca santarossa (Thu Jan 30 2003 - 09:10:23 CST)
[patch] Autodetection of formats supported by openbabel
- FX (Mon Nov 24 2008 - 17:05:26 CST)
- John Stone (Mon Nov 24 2008 - 10:22:47 CST)
- FX (Thu Nov 20 2008 - 05:07:17 CST)
[patch] potential CUDA acceleration - load-balancing on different CUDA devices
- John Stone (Wed Jan 28 2009 - 08:21:58 CST)
- Martin Aumüller (Wed Jan 28 2009 - 06:35:19 CST)
[PyMOL] 3D on linux (fwd)
- Eugen Leitl (Thu Jan 30 2003 - 09:40:15 CST)
[PyMOL] enable direct rendering DRI on fedora core 2
- Jack Howarth (Fri Jun 11 2004 - 07:22:35 CDT)
[PyMOL] NVidia [7174] Drivers & Nuccyl
- Sabuj Pattanayek (Fri Apr 01 2005 - 14:24:34 CST)
[PyMOL] nVidia Driver 7664 for Linux
- John Stone (Thu Jun 02 2005 - 15:12:06 CDT)
- sabuj pattanayek (Thu Jun 02 2005 - 13:57:54 CDT)
[PyMOL] pymol crashes with new [7167] nvidia driver
- John Stone (Tue Mar 29 2005 - 12:52:55 CST)
- Sabuj Pattanayek (Tue Mar 29 2005 - 11:55:03 CST)
- John Stone (Tue Mar 29 2005 - 11:31:14 CST)
- Sabuj Pattanayek (Tue Mar 29 2005 - 11:11:54 CST)
- John Stone (Mon Mar 28 2005 - 09:10:09 CST)
- Sabuj Pattanayek (Sat Mar 26 2005 - 16:45:31 CST)
- Sabuj Pattanayek (Sat Mar 26 2005 - 16:42:42 CST)
[request] Best practices for rendering frames and making movies
- John Stone (Wed Feb 22 2012 - 11:12:27 CST)
- Axel Kohlmeyer (Tue Feb 21 2012 - 18:29:19 CST)
- Diego Enry Barreto Gomes (Tue Feb 21 2012 - 17:22:56 CST)
[selection problem] When I choose all not 'solvent', one residue is gone?v1.8.3
- Stanley Lan (Fri Oct 28 2005 - 11:47:06 CDT)
[Stefan_Franzen@ncsu.edu: Patch for deoxy and dideoxy nucleotides]
- Jim Phillips (Wed Feb 15 2012 - 10:24:11 CST)
[Tech] Colors in VMD
- Andrew Dalke (Fri Jan 24 1997 - 15:24:38 CST)
- Chris Upton (Fri Jan 24 1997 - 11:55:13 CST)
- Andrew Dalke (Fri Jan 24 1997 - 11:44:45 CST)
[Tech] Customizing VMD: hot keys and popup menus
- Andrew Dalke (Fri Jan 31 1997 - 12:10:02 CST)
[VMD TECH] Tracing VMD Variables (Part II)
- Alexander Balaeff (Thu May 01 1997 - 16:29:52 CDT)
- Jeff Ulrich (Wed Apr 30 1997 - 17:42:04 CDT)
[vmd-l] Graduate assistanship in Bioinformatics at NCSA
- Gloria Rendon (Wed Mar 28 2007 - 17:45:25 CDT)
[vmd] K3b bug?
- christopher (Sat Jan 27 2007 - 09:15:58 CST)
- Peter Freddolino (Sat Jan 27 2007 - 08:26:32 CST)
- Peter Freddolino (Sat Jan 27 2007 - 07:59:55 CST)
- christopher (Sat Jan 27 2007 - 07:12:57 CST)
[vmd] max number of molecules on mac
- John Stone (Tue Jan 17 2006 - 10:06:26 CST)
- James Rustad (Tue Jan 17 2006 - 09:55:22 CST)
- Axel Kohlmeyer (Tue Jan 17 2006 - 06:32:23 CST)
- James Rustad (Mon Jan 16 2006 - 22:27:30 CST)
[vmd_chcwaaa@yahoo.com.cn: about measure dihedral angle]
- Jan Saam (Fri May 16 2008 - 18:15:51 CDT)
[VMDTECH] Drawing Methods, Part I
- Andrew Dalke (Fri Mar 07 1997 - 16:22:57 CST)
[VMDTECH] Drawing Methods, Part II
- Andrew Dalke (Fri Mar 14 1997 - 16:40:47 CST)
[VMDTECH] Hingefind
- Willy Wriggers (Wed Jun 11 1997 - 16:57:22 CDT)
- Sergei Izrailev (Wed Jun 11 1997 - 16:45:17 CDT)
[VMDTECH] Making Movies
- Andrew Dalke (Fri Feb 14 1997 - 12:56:27 CST)
[VMDTECH] Morphing
- Andrew Dalke (Fri Mar 28 1997 - 12:14:17 CST)
[VMDTECH] RMSD and best-fit alignments
- Andrew Dalke (Fri Feb 07 1997 - 14:37:24 CST)
[VMDTECH] Schedule Change
- Andrew Dalke (Fri Apr 18 1997 - 18:07:35 CDT)
[VMDTECH] Secondary Structure
- Andrew Dalke (Fri Feb 28 1997 - 16:38:21 CST)
[VMDTECH] Small things
- Andrew Dalke (Fri Feb 21 1997 - 13:02:34 CST)
[VMDTECH] Smoothing Animations
- Andrew Dalke (Sun Apr 13 1997 - 01:28:43 CDT)
[VMDTECH] Tracing Atom Picks
- Andrew Dalke (Fri Apr 04 1997 - 18:27:57 CST)
[VMDTECH] VMD 1.2b1 is now available
- Andrew Dalke (Tue Mar 25 1997 - 03:03:32 CST)
- Andrew Dalke (Tue Mar 25 1997 - 02:09:57 CST)
[VMDTECH] Working with colors
- Sergei Izrailev (Tue Jul 01 1997 - 20:21:43 CDT)
a air box
- Peter Freddolino (Thu May 10 2007 - 10:25:46 CDT)
- Axel Kohlmeyer (Thu May 10 2007 - 09:22:45 CDT)
- SMAHANE CHALABI (Thu May 10 2007 - 08:38:15 CDT)
A bug about "trans" command
- John Stone (Wed Sep 21 2011 - 11:06:17 CDT)
- KM Tu (Fri Sep 16 2011 - 10:33:49 CDT)
a common list problem
- John Stone (Fri May 02 2008 - 10:39:04 CDT)
- Thomas C. Bishop (Fri May 02 2008 - 10:28:30 CDT)
a detail about PSFGENv1.4
- Jim Phillips (Wed Feb 02 2011 - 22:45:23 CST)
- Seth Tanner (Wed Feb 02 2011 - 12:49:37 CST)
a display problem
- John Stone (Thu Mar 09 2006 - 10:33:27 CST)
- lily jin (Thu Mar 09 2006 - 10:22:57 CST)
A error of " transforming dcd into pdb "
- Axel Kohlmeyer (Tue Aug 29 2006 - 11:55:49 CDT)
- John Stone (Tue Aug 29 2006 - 11:51:00 CDT)
- wang (Tue Aug 29 2006 - 03:02:10 CDT)
- Leonardo Trabuco (Tue Aug 29 2006 - 10:48:36 CDT)
- Eduard Schreiner (Tue Aug 29 2006 - 04:46:24 CDT)
- dimka (Tue Aug 29 2006 - 02:41:47 CDT)
- dimka (Tue Aug 29 2006 - 02:37:14 CDT)
- Leonardo Trabuco (Tue Aug 29 2006 - 02:02:52 CDT)
- wang (Tue Aug 29 2006 - 01:27:52 CDT)
a few questions about VMD
- John Stone (Fri Sep 22 2000 - 16:34:17 CDT)
- Eric Hu (Fri Sep 22 2000 - 16:31:06 CDT)
- John Stone (Wed Sep 20 2000 - 19:55:26 CDT)
- Eric Hu (Wed Sep 20 2000 - 17:49:07 CDT)
a few questions on uninstall, labels, rasmol,seq window
- John Stone (Fri Apr 11 2003 - 14:49:49 CDT)
- Y U Sasidhar (Fri Apr 11 2003 - 00:07:51 CDT)
a file for commands of console
- Nima Nouri (Sat Jul 30 2011 - 11:56:58 CDT)
- Ajasja LjubetiÄ (Sat Jul 30 2011 - 09:40:23 CDT)
- JhonY. I. (Sat Jul 30 2011 - 08:55:14 CDT)
a gas box
- Axel Kohlmeyer (Tue May 15 2007 - 08:22:16 CDT)
- SMAHANE CHALABI (Tue May 15 2007 - 06:10:05 CDT)
a guide for installing vmd-1.8.7 on ubuntu10.10 (LINUXAMD64)
- Andrew Jewett (Mon Jan 10 2011 - 22:27:39 CST)
- Andrew Jewett (Mon Jan 10 2011 - 19:56:23 CST)
a name quesiton
- lily jin (Fri Apr 07 2006 - 11:19:41 CDT)
A patch for OFF import and a question about representation of surfaces
- John Stone (Tue Jul 12 2011 - 13:22:54 CDT)
- FX (Sat Jul 02 2011 - 05:08:08 CDT)
a problem about multiplot
- Jérôme Hénin (Thu Jan 27 2011 - 04:04:55 CST)
- superdirac (Wed Jan 26 2011 - 21:43:38 CST)
- superdirac (Wed Jan 26 2011 - 21:09:38 CST)
- John Stone (Wed Jan 26 2011 - 20:19:47 CST)
- superdirac (Wed Jan 26 2011 - 20:01:18 CST)
a problem in visualizing dump files with vmd
- Axel Kohlmeyer (Tue Feb 23 2010 - 05:44:27 CST)
- Robabeh Moosavi (Tue Feb 23 2010 - 05:43:46 CST)
A problem on PBC
- Axel Kohlmeyer (Thu Jul 16 2009 - 11:56:57 CDT)
- yzliu (Thu Jul 16 2009 - 02:06:34 CDT)
a problem on Red Hat Enterprise Linux 5
- Seungho Choe (Mon Jan 05 2009 - 11:25:16 CST)
- John Stone (Mon Jan 05 2009 - 16:13:40 CST)
- Seungho Choe (Mon Jan 05 2009 - 10:48:32 CST)
A problem on SASA measure
- John Stone (Wed Jul 15 2009 - 16:03:25 CDT)
- yzliu (Fri Jul 10 2009 - 08:12:23 CDT)
a problem using python in vmd
- Kristina Woods (Thu Aug 25 2005 - 10:56:15 CDT)
a problem with installation (to generate the Makefile )
- Axel Kohlmeyer (Tue Aug 07 2007 - 08:15:36 CDT)
- John Stone (Mon Aug 06 2007 - 23:56:38 CDT)
- Panichakorn Jaiyong (Mon Aug 06 2007 - 23:52:26 CDT)
a question
- Vlad Cojocaru (Fri Jan 30 2004 - 07:29:38 CST)
- John Stone (Tue Feb 06 2001 - 09:55:21 CST)
- cojocaru vlad (Mon Feb 05 2001 - 10:24:40 CST)
a question about "measure fit"
- John Stone (Fri Jun 23 2006 - 11:13:26 CDT)
- dwang_at_cs.kent.edu (Thu Jun 22 2006 - 20:36:59 CDT)
a question about dcd files
- Ana Celia Vila Verde (Thu Feb 02 2006 - 08:32:35 CST)
- John Stone (Wed Feb 01 2006 - 14:29:15 CST)
- Ana Celia Vila Verde (Wed Feb 01 2006 - 13:53:39 CST)
a question about get the coordinates in vector form
- Axel Kohlmeyer (Fri Apr 15 2005 - 16:19:25 CDT)
- Eugen Leitl (Fri Apr 15 2005 - 15:45:24 CDT)
- M SH (Fri Apr 15 2005 - 13:31:45 CDT)
a question about paratool
- Jan Saam (Thu Feb 22 2007 - 18:43:57 CST)
- Javaria Ahmad (Tue Feb 20 2007 - 06:35:52 CST)
a question about ribbon representation
- John Stone (Wed Apr 12 2006 - 16:04:05 CDT)
- yzhou_at_chem.umn.edu (Wed Apr 12 2006 - 15:07:27 CDT)
A question about the namd energy plugin of VMD
- Axel Kohlmeyer (Sun Oct 26 2008 - 13:12:06 CDT)
- wayj86 wayj86 (Sun Oct 26 2008 - 08:58:21 CDT)
A question about the plugin of salt bridge plugin
- Leonardo Trabuco (Wed Oct 22 2008 - 11:24:09 CDT)
a question in using PSFGEN
- Jim Phillips (Tue Apr 27 2004 - 11:04:31 CDT)
- Yang Yang (Mon Apr 26 2004 - 21:55:45 CDT)
a script for angular distribution
- David Wedner (Wed Jan 26 2011 - 11:41:51 CST)
- David Wedner (Wed Jan 26 2011 - 10:44:34 CST)
a small bug in solvate 1.3
- John Stone (Thu May 14 2009 - 20:45:17 CDT)
- Maxim Paliy. (Thu May 14 2009 - 19:06:32 CDT)
a suggestion and query on command usage
- John Stone (Tue Jul 05 2005 - 10:06:10 CDT)
- Eduard Schreiner (Sat Jul 02 2005 - 10:01:53 CDT)
- cbala_at_igib.res.in (Fri Jul 01 2005 - 08:08:57 CDT)
A very minor question on the MacOS X native bundle version
- MengJuei Hsieh (Wed Nov 27 2002 - 01:28:08 CST)
- John Stone (Sun Nov 24 2002 - 20:43:06 CST)
- MengJuei Hsieh (Fri Nov 22 2002 - 19:53:57 CST)
A vmd bug 1.8a28
- Stéphane Teletchéa (Thu Oct 31 2002 - 08:01:34 CST)
a VMD script similar to "Rahmachandran plot' applicable to nucleic acids ?
- Maxim Paliy (Fri Sep 12 2008 - 19:14:04 CDT)
A VMD script to emulate the Matlab "jet" colorscale
- John Stone (Wed Dec 09 2009 - 11:48:11 CST)
- John Stone (Tue Dec 08 2009 - 16:49:40 CST)
a water box containing only the absorbent heads of
- Axel Kohlmeyer (Thu May 03 2007 - 07:44:05 CDT)
- SMAHANE CHALABI (Thu May 03 2007 - 03:11:45 CDT)
a way to create a nice image
- Axel Kohlmeyer (Sun Feb 22 2009 - 11:16:17 CST)
- politr_at_huji.ac.il (Sun Feb 22 2009 - 10:52:01 CST)
- politr_at_huji.ac.il (Sun Feb 22 2009 - 10:51:35 CST)
- Axel Kohlmeyer (Sat Feb 21 2009 - 11:03:44 CST)
- politr_at_huji.ac.il (Sat Feb 21 2009 - 08:36:44 CST)
abinit plugin for VMD not yet tried?
- Axel Kohlmeyer (Mon May 25 2009 - 10:05:30 CDT)
- Rob (Mon May 25 2009 - 02:04:57 CDT)
- Axel Kohlmeyer (Sun May 24 2009 - 08:38:11 CDT)
- Rob (Sun May 24 2009 - 04:31:17 CDT)
- Axel Kohlmeyer (Fri May 22 2009 - 10:05:14 CDT)
- Rob (Fri May 22 2009 - 02:08:15 CDT)
ABINIT plugin ready for testing: can read GEO and DEN files.
- Axel Kohlmeyer (Thu Jun 18 2009 - 11:13:59 CDT)
- John Stone (Thu Jun 18 2009 - 09:59:46 CDT)
- Rob (Thu Jun 18 2009 - 02:27:08 CDT)
- Axel Kohlmeyer (Wed Jun 17 2009 - 12:01:30 CDT)
- John Stone (Wed Jun 17 2009 - 11:33:20 CDT)
- Rob (Wed Jun 17 2009 - 10:59:23 CDT)
- Axel Kohlmeyer (Tue Jun 16 2009 - 22:59:20 CDT)
- Rob (Tue Jun 16 2009 - 21:23:22 CDT)
- John Stone (Tue Jun 16 2009 - 21:33:31 CDT)
- Axel Kohlmeyer (Tue Jun 16 2009 - 07:31:03 CDT)
- Rob (Tue Jun 16 2009 - 03:27:28 CDT)
- Axel Kohlmeyer (Mon Jun 15 2009 - 10:18:34 CDT)
- John Stone (Mon Jun 15 2009 - 09:52:21 CDT)
- Rob (Mon Jun 15 2009 - 01:32:28 CDT)
about ".cpmd" format
- Axel Kohlmeyer (Fri Jun 04 2010 - 00:50:48 CDT)
- Liu (Thu Jun 03 2010 - 22:31:58 CDT)
About "Visualization and Analysis of CPMD data with VMD" tutorial
- Joshua Adelman (Thu Dec 10 2009 - 05:29:17 CST)
- Aurum Bai (Thu Dec 10 2009 - 02:29:22 CST)
about adding ions to an ion channel pore
- Axel Kohlmeyer (Fri Apr 01 2005 - 01:46:50 CST)
- Xiaoqing Wang (Thu Mar 31 2005 - 20:59:36 CST)
About Atom Index Order
- Axel Kohlmeyer (Thu Aug 12 2010 - 18:20:52 CDT)
- Cun Zhang (Thu Aug 12 2010 - 04:58:57 CDT)
- Axel Kohlmeyer (Thu Aug 12 2010 - 04:52:38 CDT)
- Cun Zhang (Thu Aug 12 2010 - 03:52:10 CDT)
- Axel Kohlmeyer (Wed Aug 11 2010 - 22:01:11 CDT)
- Cun Zhang (Wed Aug 11 2010 - 20:59:08 CDT)
about average structure
- Jan Saam (Sun Mar 21 2004 - 05:16:00 CST)
about CHARMM electrostaic potential
- ivana adamovic (Mon Feb 05 2007 - 11:56:35 CST)
- John Stone (Mon Feb 05 2007 - 11:03:04 CST)
- ivana adamovic (Mon Feb 05 2007 - 09:46:47 CST)
About CHARMM electrostaic potential map
- ivana adamovic (Wed Jan 31 2007 - 14:30:11 CST)
- John Stone (Wed Jan 31 2007 - 13:37:30 CST)
- ivana adamovic (Wed Jan 31 2007 - 09:26:19 CST)
about CHARMM electrostatic potential
- ivana adamovic (Mon Feb 05 2007 - 14:54:15 CST)
- John Stone (Mon Feb 05 2007 - 14:47:51 CST)
- ivana adamovic (Mon Feb 05 2007 - 14:44:51 CST)
About Cluster Plug-in
- John Stone (Tue Feb 05 2008 - 09:45:23 CST)
- OZGE ENGIN (Tue Feb 05 2008 - 09:05:00 CST)
about command measure dipole
- Axel Kohlmeyer (Wed Feb 24 2010 - 13:22:51 CST)
- matziast_at_med.uth.gr (Wed Feb 24 2010 - 12:37:49 CST)
about command readpdb?
- John Stone (Mon Nov 24 2003 - 14:14:21 CST)
- Li Qiang (Mon Nov 24 2003 - 09:12:11 CST)
about docking with VMD
- Nuno Sousa Cerqueira (Wed Jul 20 2011 - 10:32:41 CDT)
- Cristina Rodríguez (Tue Jul 19 2011 - 17:34:25 CDT)
- Hui WEI (Tue Jul 19 2011 - 16:37:36 CDT)
About drawing bonds.
- John Stone (Wed Apr 24 2002 - 10:11:10 CDT)
- Luca UvA (Wed Apr 24 2002 - 08:07:32 CDT)
about dynamical change color of atoms
- John Stone (Thu Apr 01 2004 - 12:57:33 CST)
- Emmanouil_Bambakopoulos (Thu Apr 01 2004 - 09:35:40 CST)
About FFTP with transition metal complexes
- JC Gumbart (Wed Feb 29 2012 - 20:36:18 CST)
- Francesco Pietra (Wed Feb 29 2012 - 05:52:03 CST)
- JC Gumbart (Sat Feb 18 2012 - 16:39:55 CST)
- Mayne, Christopher G (Sat Feb 18 2012 - 15:39:58 CST)
- Francesco Pietra (Sat Feb 18 2012 - 00:23:01 CST)
about frame
- John Stone (Tue Jan 20 2004 - 10:50:37 CST)
- moggces_at_rx.mc.ntu.edu.tw (Mon Jan 19 2004 - 20:17:40 CST)
about gamess plugin
- John Stone (Thu Sep 29 2005 - 10:59:51 CDT)
- mashaojienuaa (Thu Sep 29 2005 - 01:40:50 CDT)
- John Stone (Mon Jun 06 2005 - 12:49:20 CDT)
- mashaojie163 (Thu Jun 02 2005 - 20:50:59 CDT)
about graphics accelaration
- John Stone (Wed May 15 2002 - 11:21:56 CDT)
- Stéphane Teletchéa (Wed May 15 2002 - 10:47:04 CDT)
- Stéphane Teletchéa (Mon Apr 15 2002 - 03:22:03 CDT)
- John Stone (Fri Apr 12 2002 - 12:27:41 CDT)
- Emanuel Vamvakopoulos (Fri Apr 12 2002 - 11:36:49 CDT)
About Hydrogen bond calculation
- ÖÜÎÄ²ý (Thu Nov 13 2008 - 03:20:03 CST)
about maximum number of atoms
- Brian Bennion (Wed Aug 02 2006 - 17:55:28 CDT)
- John Stone (Wed Aug 02 2006 - 17:25:32 CDT)
- L. Michel Espinoza-Fonseca (Wed Aug 02 2006 - 17:04:07 CDT)
- John Stone (Wed Aug 02 2006 - 16:53:53 CDT)
- L. Michel Espinoza-Fonseca (Wed Aug 02 2006 - 16:41:16 CDT)
- John Stone (Wed Aug 02 2006 - 15:39:50 CDT)
- L. Michel Espinoza-Fonseca (Wed Aug 02 2006 - 15:25:41 CDT)
about measure dihedral angle
- cong chen (Thu May 08 2008 - 20:53:08 CDT)
about measuring volume of the binding site
- John Stone (Sun Feb 15 2009 - 12:59:15 CST)
- Falgun Shah (Sat Feb 14 2009 - 15:58:14 CST)
about new vmd on windows
- mashaojie163 (Tue Oct 11 2005 - 04:11:24 CDT)
About occupancy volume maps
- Axel Kohlmeyer (Thu Jun 19 2008 - 05:20:24 CDT)
- Ignacio Fernández Galván (Thu Jun 19 2008 - 02:43:11 CDT)
- John Stone (Thu Jun 19 2008 - 00:38:25 CDT)
- Ignacio Fernández Galván (Fri Jun 13 2008 - 05:40:17 CDT)
About open file .pdbqt in VMD software
- John Stone (Mon Dec 19 2011 - 17:29:30 CST)
About openning a file to write in callback function
- Axel Kohlmeyer (Mon Apr 23 2007 - 14:00:35 CDT)
- preeda (Mon Apr 23 2007 - 12:07:59 CDT)
about paratool
- Axel Kohlmeyer (Thu Jun 03 2010 - 04:59:08 CDT)
- Francesco Pietra (Thu Jun 03 2010 - 02:50:05 CDT)
- Axel Kohlmeyer (Wed Jan 27 2010 - 04:48:11 CST)
- Caio Veloso (Tue Jan 26 2010 - 11:21:13 CST)
- saam (Tue Mar 11 2008 - 11:56:45 CDT)
- laura (Wed Mar 05 2008 - 02:33:41 CST)
- Francesco Pietra (Wed May 23 2007 - 09:38:40 CDT)
About psf file
- Axel Kohlmeyer (Wed Jun 29 2011 - 08:31:02 CDT)
- safron saif (Wed Jun 29 2011 - 04:02:57 CDT)
about psf file generation
- Axel Kohlmeyer (Tue Aug 02 2011 - 07:43:29 CDT)
- sajad falsafi (Tue Aug 02 2011 - 02:12:54 CDT)
- safron saif (Mon Aug 01 2011 - 07:22:08 CDT)
about psfgen patch
- Jérôme Hénin (Thu Sep 23 2010 - 11:58:38 CDT)
- Zhang, Jiong (MU-Student) (Thu Sep 23 2010 - 09:20:39 CDT)
about resid
- moggces (Thu Nov 20 2003 - 11:16:17 CST)
- Justin Gullingsrud (Thu Nov 20 2003 - 12:16:35 CST)
about shape order parameter
- Emmanuel Vamvakopoulos (Sat May 24 2003 - 07:12:07 CDT)
about superimposing by VMD
- John Stone (Fri May 09 2003 - 10:46:46 CDT)
- Hu, Xiaohua (Wed May 07 2003 - 13:36:47 CDT)
About Tcl command
- zhjjvmd (Sun Apr 06 2008 - 01:17:54 CDT)
- Axel Kohlmeyer (Sun Apr 06 2008 - 00:58:40 CDT)
- zhjjvmd (Sat Apr 05 2008 - 20:58:15 CDT)
about tcl program and run tcl script in namd
- Justin Gullingsrud (Sat Apr 16 2005 - 16:42:52 CDT)
- Gino (Sat Apr 16 2005 - 01:31:23 CDT)
About the criterion of H bond
- Axel Kohlmeyer (Sat Jan 02 2010 - 03:33:38 CST)
- yongle (Sat Jan 02 2010 - 02:23:18 CST)
about the psfgen of vmd
- John Stone (Tue Mar 21 2006 - 10:37:14 CST)
- Shulin Zhuang (Tue Mar 21 2006 - 08:46:28 CST)
About the syntax in Autopsf - Add Patch for PRES PLIG
- Francesco Pietra (Sun Oct 30 2011 - 10:34:43 CDT)
- Francesco Pietra (Sun Oct 30 2011 - 03:28:27 CDT)
about TkConsole
- cong chen (Wed Apr 08 2009 - 07:27:52 CDT)
- Axel Kohlmeyer (Tue Apr 07 2009 - 21:32:40 CDT)
- cong chen (Tue Apr 07 2009 - 20:04:45 CDT)
- Axel Kohlmeyer (Tue Apr 07 2009 - 12:58:48 CDT)
- cong chen (Mon Apr 06 2009 - 23:16:19 CDT)
About using trace
- John Stone (Fri Apr 20 2007 - 12:02:14 CDT)
- preeda (Fri Apr 20 2007 - 10:04:09 CDT)
about viewing charge density
- John Stone (Sun Apr 02 2006 - 14:37:46 CDT)
- jun (Sun Apr 02 2006 - 14:00:58 CDT)
about vmd
- John Stone (Wed Dec 29 2004 - 18:07:49 CST)
- yoongho (Wed Dec 29 2004 - 06:58:51 CST)
About VMD compile in win32
- John Stone (Wed Mar 08 2006 - 11:18:25 CST)
- mustapha.hamdi_at_ensi-bourges.fr (Wed Mar 08 2006 - 12:04:29 CST)
about vmd solvation plugin
- David Li (Wed Jun 09 2010 - 05:33:10 CDT)
- Axel Kohlmeyer (Wed Jun 09 2010 - 07:11:11 CDT)
- Axel Kohlmeyer (Sat Jun 05 2010 - 19:32:54 CDT)
- David Li (Sat Jun 05 2010 - 18:31:36 CDT)
about writepdb
- cong chen (Mon May 05 2008 - 00:08:53 CDT)
- JC Gumbart (Mon May 05 2008 - 00:18:00 CDT)
absolute C.O.M motion calculation script: help
- John Stone (Fri May 18 2007 - 16:54:42 CDT)
- hl332_at_drexel.edu (Wed May 16 2007 - 11:06:45 CDT)
abuot avpos
- John Stone (Wed Feb 23 2011 - 13:02:12 CST)
- emiliawu_at_dicp.ac.cn (Thu Feb 24 2011 - 00:57:00 CST)
Accelerating your VMD 1.8.7 calculations with an NVIDIA Tesla GPU
- John Stone (Tue Jun 02 2009 - 10:25:36 CDT)
- Jacob Story (Mon Jun 01 2009 - 09:20:22 CDT)
Access to bond information inside a VMD plugin...
- Axel Kohlmeyer (Mon Oct 09 2006 - 12:14:55 CDT)
- Miller, Patrick (Mon Oct 09 2006 - 11:19:54 CDT)
Access to Python libraries from Mandrake8.1
- Justin Gullingsrud (Sun Mar 03 2002 - 03:16:34 CST)
- John Stone (Thu Feb 28 2002 - 09:59:42 CST)
- jen ramus (Wed Feb 27 2002 - 19:08:08 CST)
accessing bonds angles dihedrals etc lists after PSF file is read into VMD
- Iman Salehinia (Mon Jan 26 2009 - 16:10:39 CST)
- John Stone (Mon Jan 26 2009 - 15:42:17 CST)
- Axel Kohlmeyer (Fri Jan 23 2009 - 16:20:30 CST)
- Iman Salehinia (Thu Jan 22 2009 - 18:21:59 CST)
- Peter Freddolino (Thu Jan 22 2009 - 18:38:36 CST)
- John Stone (Thu Jan 22 2009 - 11:33:21 CST)
- Maxim Paliy (Wed Jan 21 2009 - 15:29:54 CST)
Accessing TCL through Python interface
- Daniel B. Faken (Sat May 14 2005 - 15:09:35 CDT)
accessing values for selection keywords
- Nadja Lederer (Wed Mar 18 2009 - 05:48:43 CDT)
- Nadja Lederer (Wed Mar 18 2009 - 05:25:54 CDT)
accessing VMD help
- Robert Campbell (Fri Oct 31 2003 - 09:51:53 CST)
- Brian Bennion (Fri Oct 31 2003 - 10:14:42 CST)
- John Robert Kitchin (Fri Oct 31 2003 - 09:22:10 CST)
- Fernandez-Alonso, F (Felix) (Fri Oct 31 2003 - 07:42:15 CST)
ACE and NH2
- ÁèáíÜóéïò Óôáõñáêïýäçò (Tue Jul 03 2007 - 16:37:43 CDT)
- Peter Freddolino (Tue Jul 03 2007 - 16:46:26 CDT)
ACS award information, Oct 15 deadline]
- John Stone (Tue Aug 24 2010 - 09:48:02 CDT)
ACTC Triangle Consolidation
- John Stone (Fri Dec 12 2003 - 14:32:00 CST)
- Tyler Luchko (Fri Dec 12 2003 - 12:24:06 CST)
- John Stone (Fri Dec 12 2003 - 10:06:50 CST)
- Tyler Luchko (Thu Dec 11 2003 - 16:37:33 CST)
Activation energy
- Alexis Salas (Thu Aug 19 2004 - 13:33:36 CDT)
AD:Family Reunion T Shirts & More
- hifiber7_at_compuserve.com (Sat Feb 19 2000 - 11:12:59 CST)
- hifiber7_at_compuserve.com (Sat Feb 12 2000 - 02:20:20 CST)
add a new color
- John Stone (Mon Feb 23 2004 - 11:07:41 CST)
- Vlad Cojocaru (Sun Feb 22 2004 - 12:51:11 CST)
add a new file to vmd1.8.3 on linux(FC4)
- John Stone (Tue Nov 01 2005 - 15:09:30 CST)
- baogen duan (Sun Oct 30 2005 - 21:50:22 CST)
add a new file type to VMD on linux(FC4)
- John Stone (Fri Oct 28 2005 - 10:24:32 CDT)
- John Stone (Fri Oct 28 2005 - 09:55:51 CDT)
- baogen duan (Thu Oct 27 2005 - 22:32:59 CDT)
add a new representation style to VMD
- John Stone (Tue Feb 03 2009 - 09:02:27 CST)
- Vlad Cojocaru (Tue Feb 03 2009 - 08:22:24 CST)
Add a surface to a pdb file
- Taufik Al-Sarraj (Wed May 05 2010 - 18:53:30 CDT)
- John Stone (Mon Mar 08 2010 - 14:32:10 CST)
- Fatemesadat Emami (Mon Mar 08 2010 - 13:47:43 CST)
- Fatemesadat Emami (Mon Mar 08 2010 - 10:05:36 CST)
- John Stone (Mon Mar 08 2010 - 10:04:00 CST)
- Fatemesadat Emami (Mon Mar 08 2010 - 09:57:02 CST)
- John Stone (Mon Mar 08 2010 - 09:25:27 CST)
- Fatemesadat Emami (Mon Mar 08 2010 - 08:59:14 CST)
Add H-atoms to Pdb file for NMR
- John Stone (Tue Apr 20 2004 - 15:06:59 CDT)
- chandran karunakaran (Tue Apr 20 2004 - 11:22:32 CDT)
add Mg2+
- Peter Freddolino (Fri Dec 21 2007 - 11:09:10 CST)
- Lixia Jin Day (Fri Dec 21 2007 - 10:52:42 CST)
- John Stone (Wed Dec 19 2007 - 15:37:16 CST)
- Lixia Jin Day (Wed Dec 19 2007 - 15:27:04 CST)
- John Stone (Wed Dec 19 2007 - 14:09:30 CST)
- Lixia Jin Day (Thu Dec 13 2007 - 11:19:06 CST)
Add solvation box tool
- Dong Luo (Thu Jun 09 2011 - 09:46:33 CDT)
Add transparent plane to molecular
- Rob (Tue Jan 30 2007 - 09:05:36 CST)
Add transparent plane to molecular structure
- Axel Kohlmeyer (Tue Jan 30 2007 - 11:04:27 CST)
- Rob (Tue Jan 30 2007 - 03:12:21 CST)
- Axel Kohlmeyer (Mon Jan 29 2007 - 21:31:50 CST)
- Rob (Mon Jan 29 2007 - 20:57:38 CST)
Add user output to DCD trajectories
- Nima Nouri (Thu Jul 21 2011 - 18:41:05 CDT)
- Axel Kohlmeyer (Thu Jul 14 2011 - 09:23:45 CDT)
- Nima Nouri (Thu Jul 14 2011 - 05:18:29 CDT)
add water on the top of protein border
- Xiaoqing Wang (Wed Apr 06 2005 - 09:20:24 CDT)
Add-H for crystallization water only
- Francesco Pietra (Wed May 09 2012 - 15:08:09 CDT)
Add/Remove Bonds
- John Stone (Thu Jun 24 2010 - 16:47:36 CDT)
- Rabab Toubar (Thu Jun 24 2010 - 12:27:20 CDT)
Adding a logo to a screenshot
- John Stone (Fri May 20 2005 - 15:28:47 CDT)
- Palmer, Teresa (Fri May 20 2005 - 15:12:55 CDT)
adding a metal ion
- Joyce Tan (Tue Sep 21 2010 - 20:39:43 CDT)
Adding a three letter residue name to VMD's protein recognition
- John Stone (Fri Nov 11 2011 - 12:24:10 CST)
- J. Nathan Scott (Thu Oct 27 2011 - 13:13:09 CDT)
Adding a Water Box
- Axel Kohlmeyer (Mon Feb 23 2009 - 19:00:55 CST)
- Mohamed Seyam (Mon Feb 23 2009 - 17:36:14 CST)
Adding an atom to existing trajectory (to enable RDF from centre of mass of a selection)
- Sam Wallace (Sun Nov 13 2011 - 04:58:37 CST)
- John Stone (Fri Nov 11 2011 - 10:06:58 CST)
- Sam Wallace (Wed Nov 09 2011 - 16:38:39 CST)
Adding an atom to the existing pdb
- Axel Kohlmeyer (Wed May 19 2010 - 06:36:59 CDT)
- Narasimhan LOGANATHAN (Wed May 19 2010 - 05:18:22 CDT)
Adding Atoms in Colors Menu
- Justin Gullingsrud (Fri Apr 02 2004 - 10:18:01 CST)
- Alexandre Suman de Araujo (Fri Apr 02 2004 - 03:33:52 CST)
adding atoms to empty molecules
- Thomas Evangelidis (Tue Jun 02 2009 - 15:57:56 CDT)
- Axel Kohlmeyer (Tue Jun 02 2009 - 09:22:43 CDT)
- Thomas Evangelidis (Mon Jun 01 2009 - 13:47:07 CDT)
adding atomselections?
- Fatemesadat Emami (Sat May 08 2010 - 22:15:43 CDT)
- Nicholas Musolino (Sat May 08 2010 - 20:10:24 CDT)
- Axel Kohlmeyer (Sat May 08 2010 - 19:34:30 CDT)
- Fatemesadat Emami (Sat May 08 2010 - 19:42:24 CDT)
- Fatemesadat Emami (Sat May 08 2010 - 18:28:48 CDT)
Adding bonds between many metal atoms
- Qiang Fu (Mon Feb 28 2011 - 03:41:34 CST)
- Axel Kohlmeyer (Fri Feb 25 2011 - 10:33:27 CST)
- Qiang Fu (Fri Feb 25 2011 - 09:48:45 CST)
adding bonds between segments
- Justin Gullingsrud (Thu Feb 19 2004 - 12:28:52 CST)
- Streiff, John H. (Tue Feb 17 2004 - 14:20:24 CST)
Adding bonds in a script
- Ignacio Fernández Galván (Thu Sep 28 2006 - 04:08:08 CDT)
adding bonds with the mouse and writing psf
- Axel Kohlmeyer (Fri May 15 2009 - 10:28:59 CDT)
- John Stone (Thu May 14 2009 - 20:59:20 CDT)
- Maxim Paliy. (Thu May 14 2009 - 20:01:40 CDT)
Adding cadmium into protein
- John Stone (Wed Oct 20 2010 - 10:23:25 CDT)
- Joyce Tan (Wed Oct 20 2010 - 01:55:36 CDT)
Adding color scale bar on the screen
- John Stone (Thu Apr 14 2005 - 20:36:53 CDT)
- Jay Lee (Thu Apr 14 2005 - 18:50:22 CDT)
adding hydrogen atoms
- Peter Freddolino (Tue May 02 2006 - 13:00:10 CDT)
- Naser, Md Abu (Tue May 02 2006 - 09:20:34 CDT)
Adding labels, etc.
- Justin Gullingsrud (Sun Jul 14 2002 - 12:25:20 CDT)
- Sanjeev B.S. (Sun Jul 14 2002 - 05:40:26 CDT)
adding lipid bilayers
- Goutham (Fri Mar 06 2009 - 08:38:25 CST)
- Ramya Gamini (Fri Mar 06 2009 - 02:06:17 CST)
- Goutham (Fri Mar 06 2009 - 00:46:47 CST)
Adding missing residues
- Joyce Tan (Thu Jun 09 2011 - 01:50:05 CDT)
Adding missing residues to a protein
- sriteja mantha (Wed Feb 02 2011 - 23:40:47 CST)
adding new atoms to a molecule from a script
- Eduard Schreiner (Thu Oct 05 2006 - 08:20:54 CDT)
- Enzo Vitale (Thu Oct 05 2006 - 05:20:55 CDT)
Adding New Color Definitions to Color Form
- John Stone (Tue Jan 24 2006 - 10:11:21 CST)
- Adrian Koh (Tue Jan 24 2006 - 03:08:48 CST)
Adding other online PDB data bases to VMD
- John Stone (Tue Jul 20 2010 - 10:52:25 CDT)
- Axel Kohlmeyer (Fri Jul 16 2010 - 19:58:22 CDT)
- Ian Stokes-Rees (Fri Jul 16 2010 - 18:46:31 CDT)
adding patches via autopsf
- Bennion, Brian (Wed Mar 21 2012 - 11:34:47 CDT)
adding residue at start or end
- Peter Freddolino (Tue Jun 19 2007 - 12:41:10 CDT)
- Zhenwei Lu (Tue Jun 19 2007 - 10:58:30 CDT)
Adding Salt to a system
- Ioana Cozmuta (Wed Jun 22 2005 - 20:59:47 CDT)
- Thomas C. Bishop (Thu May 19 2005 - 10:09:26 CDT)
adding selections
- Axel Kohlmeyer (Fri Oct 20 2006 - 14:03:56 CDT)
- Myunggi Yi (Fri Oct 20 2006 - 13:04:21 CDT)
Adding Single Residues to a Protein
- John Stone (Tue Jul 20 2010 - 14:59:19 CDT)
- Anwaar Al-Zireeni (Thu Jul 15 2010 - 18:34:56 CDT)
Adding two separate pdb files: Lipid Bilayer's with Protein's
- Axel Kohlmeyer (Wed May 20 2009 - 16:34:45 CDT)
- Lalit (Wed May 20 2009 - 13:36:56 CDT)
- David Tanner (Tue May 19 2009 - 11:00:30 CDT)
- Lalit (Mon May 18 2009 - 18:07:34 CDT)
adding urea to a protein-water system
- L. Michel Espinoza-Fonseca (Mon Jul 30 2007 - 05:05:46 CDT)
adding water box
- John Stone (Tue May 18 2010 - 12:36:24 CDT)
- Hao Sun (Mon May 17 2010 - 19:09:57 CDT)
- Hao Sun (Mon May 17 2010 - 19:09:36 CDT)
Adding water in protein
- Axel Kohlmeyer (Mon Sep 19 2011 - 07:01:15 CDT)
- madhumita das (Mon Sep 19 2011 - 06:01:15 CDT)
adding waters only in top of lipid
- Justin Gullingsrud (Thu Feb 19 2004 - 12:30:36 CST)
- Satyavani Vemparala (Tue Feb 17 2004 - 12:15:55 CST)
addition on CHARMM electrostatic pot.
- ivana adamovic (Fri Feb 02 2007 - 09:11:44 CST)
- John Stone (Thu Feb 01 2007 - 17:27:36 CST)
- ivana adamovic (Thu Feb 01 2007 - 13:42:08 CST)
Adjacent surface?
- John Stone (Mon Aug 22 2005 - 11:05:33 CDT)
- Brian Bennion (Thu Aug 18 2005 - 14:24:07 CDT)
- paul d jones (Thu Aug 18 2005 - 07:54:31 CDT)
Adjusting perspective
- John Stone (Mon May 28 2007 - 15:57:51 CDT)
- Cesar Luis Avila (Thu May 24 2007 - 11:33:40 CDT)
Adjusting R/S configuration
- Peter Freddolino (Sat Aug 11 2007 - 08:43:09 CDT)
- Francesco Pietra (Sat Aug 11 2007 - 02:21:47 CDT)
Adsorption and diffusion
- Axel Kohlmeyer (Tue Dec 14 2010 - 04:21:44 CST)
- candy deck (Tue Dec 14 2010 - 03:38:53 CST)
Adsorption VMD Tcl script error
- Axel Kohlmeyer (Wed Feb 29 2012 - 16:56:31 CST)
- Ajasja LjubetiÄ (Wed Feb 29 2012 - 16:09:59 CST)
- John Stone (Wed Feb 29 2012 - 14:05:21 CST)
- vladanstefanovic_at_kg.ac.rs (Wed Feb 29 2012 - 13:51:58 CST)
advanced python console
- Axel Kohlmeyer (Tue Sep 04 2007 - 09:18:34 CDT)
- Gianluca Santarossa (Tue Sep 04 2007 - 09:17:45 CDT)
advanced selections (or explicit pair list) for measure gofr ?
- Axel Kohlmeyer (Fri Oct 24 2008 - 10:31:13 CDT)
- Maxim Paliy (Fri Oct 24 2008 - 07:48:40 CDT)
advice for a PCI video card on redhat
- John Stone (Wed May 28 2003 - 15:49:07 CDT)
again :resid of water that is H bonded
- nahren manuel (Mon Aug 25 2008 - 21:55:40 CDT)
again about average strutcure
- li (Tue Mar 18 2008 - 17:31:26 CDT)
Aggregation analysis
- John Stone (Wed Aug 29 2007 - 00:21:48 CDT)
- zhenlong li (Thu Aug 23 2007 - 10:07:49 CDT)
algorithm for command *within*
- Thomas Evangelidis (Fri Jul 17 2009 - 03:30:45 CDT)
- BIN ZHANG (Thu Jul 16 2009 - 11:29:43 CDT)
- John Stone (Thu Jul 16 2009 - 11:32:50 CDT)
algorithm for finding center of mass of the side chains in the protein
- Ramya Gamini (Fri Aug 29 2008 - 14:28:15 CDT)
- aneesh cna (Fri Aug 29 2008 - 07:26:26 CDT)
Algorithm for RMSD and alignment
- Ignacio Fernández Galván (Tue Oct 26 2010 - 11:47:18 CDT)
Alias histidine residue
- Roman Petrenko (Sat Sep 13 2008 - 22:04:46 CDT)
- Roman Petrenko (Sat Sep 13 2008 - 22:07:46 CDT)
- Axel Kohlmeyer (Sat Sep 13 2008 - 09:09:31 CDT)
- Rabab Toubar (Fri Sep 12 2008 - 23:31:47 CDT)
Align a PORTION of several structures
- Shirley Li (Fri Oct 15 2004 - 09:33:00 CDT)
- Justin Gullingsrud (Thu Oct 14 2004 - 09:54:45 CDT)
- Shirley Li (Wed Oct 13 2004 - 18:05:01 CDT)
align and superimpose crd structures.
- Margaret Shun Cheung (Wed Jun 21 2006 - 17:16:41 CDT)
- John Stone (Wed Jun 21 2006 - 17:03:38 CDT)
- Margaret Shun Cheung (Wed Jun 21 2006 - 17:02:10 CDT)
- Margaret Shun Cheung (Wed Jun 21 2006 - 13:47:56 CDT)
- John Stone (Wed Jun 21 2006 - 13:34:48 CDT)
- John Stone (Wed Jun 21 2006 - 13:32:33 CDT)
- Margaret Shun Cheung (Wed Jun 21 2006 - 09:12:37 CDT)
align axes
- Toni Giorgino (Thu Jun 23 2011 - 14:50:14 CDT)
- Axel Kohlmeyer (Thu Jun 23 2011 - 13:42:44 CDT)
- Adrian Roitberg (Wed Jun 22 2011 - 14:17:50 CDT)
align electron density map onto simulated structure (with different center)
- John Stone (Tue Apr 17 2012 - 00:13:31 CDT)
- Magnus Andersson (Sun Apr 15 2012 - 18:42:21 CDT)
Align membrane
- Ale Gomez (Fri Oct 16 2009 - 19:18:41 CDT)
- Ramya Gamini (Fri Oct 16 2009 - 15:02:57 CDT)
- Ale Gomez (Fri Oct 16 2009 - 13:24:48 CDT)
Align mistake
- John Stone (Tue May 19 2009 - 20:32:52 CDT)
- Andres Morales N (Tue May 19 2009 - 11:14:21 CDT)
Align protein with different number of aminoacid
- Luis Gracia (Thu Feb 10 2005 - 22:35:16 CST)
- Eduard Schreiner (Fri Feb 11 2005 - 04:42:24 CST)
- matteo.pennestri_at_virgilio.it (Thu Feb 10 2005 - 16:42:50 CST)
align two molecules with index
- Zhenyu Lu (Thu Apr 28 2005 - 17:42:23 CDT)
Aligning Desmond Trajectories again
- Irene Newhouse (Mon Mar 15 2010 - 15:05:46 CDT)
aligning molecules with different number of atoms
- Leandro Martínez (Mon Feb 12 2007 - 12:39:29 CST)
- Leonardo Trabuco (Mon Feb 12 2007 - 12:05:28 CST)
- John Stone (Mon Feb 12 2007 - 12:01:58 CST)
- JC Gumbart (Mon Feb 12 2007 - 11:58:12 CST)
- namd vmd (Mon Feb 12 2007 - 11:53:49 CST)
aligning multiple trajectories to a single .pdb file
- andrew ritchie (Wed May 18 2011 - 13:30:54 CDT)
aligning one molecule
- Himanshu Khandelia (Wed Feb 14 2007 - 17:30:18 CST)
- s.schweizer_at_dkfz-heidelberg.de (Wed Feb 14 2007 - 08:47:41 CST)
aligning protein based on one helix of protein
- John Stone (Wed Oct 31 2007 - 17:25:50 CDT)
- maria goranovic (Wed Oct 31 2007 - 13:14:12 CDT)
- maria goranovic (Wed Oct 31 2007 - 08:48:29 CDT)
Aligning structures
- Marcos Sotomayor (Fri Mar 10 2006 - 10:19:43 CST)
- Richard Wood (Thu Mar 09 2006 - 21:20:45 CST)
aligning trajectories
- maria goranovic (Tue Nov 24 2009 - 04:22:54 CST)
Aligning two proteins of varying atom numbers
- ban arn (Sun May 22 2011 - 16:25:11 CDT)
- Gianluca Interlandi (Fri May 20 2011 - 11:26:25 CDT)
- ban arn (Fri May 20 2011 - 09:04:53 CDT)
- ban arn (Fri May 20 2011 - 06:37:47 CDT)
- Axel Kohlmeyer (Fri May 20 2011 - 05:47:18 CDT)
- ban arn (Fri May 20 2011 - 04:23:12 CDT)
- Eduard Schreiner (Thu May 19 2011 - 12:07:00 CDT)
- ban arn (Thu May 19 2011 - 11:37:40 CDT)
- Joseph Bylund (Thu May 19 2011 - 11:31:52 CDT)
- Axel Kohlmeyer (Thu May 19 2011 - 11:17:37 CDT)
- ban arn (Thu May 19 2011 - 10:43:10 CDT)
aligning- on top of the bilayer
- lara lara (Wed Oct 06 2010 - 00:11:00 CDT)
alignment
- Axel Kohlmeyer (Fri Jun 19 2009 - 10:56:09 CDT)
- Alison Grinthal (Fri Jun 19 2009 - 09:45:28 CDT)
- Andres Morales N (Mon May 11 2009 - 21:44:55 CDT)
- Giovanni Bellesia (Mon Nov 05 2007 - 12:10:58 CST)
- Zhaochuan Shen (Mon Nov 05 2007 - 11:41:52 CST)
- John Stone (Sun Nov 04 2007 - 13:53:06 CST)
- John Stone (Sat Nov 03 2007 - 23:30:57 CDT)
- Zhaochuan Shen (Thu Nov 01 2007 - 16:52:12 CDT)
alignment and rmsd fit
- John Stone (Fri Nov 08 2002 - 17:00:06 CST)
- Marcela Madrid (Fri Nov 08 2002 - 16:16:38 CST)
alignment problem
- Markus K. Dahlgren (Mon Oct 10 2011 - 10:29:40 CDT)
alignment problem. trying to align new lipid to bilayer, but lipid always has wrong direction?
- maria goranovic (Tue Apr 22 2008 - 07:02:42 CDT)
Alignment Python
- Per Jr. Greisen (Fri Aug 11 2006 - 05:19:15 CDT)
aligntool
- Barry Isralewitz (Thu Feb 13 2003 - 19:33:38 CST)
- Ioana Cozmuta (Thu Feb 13 2003 - 17:43:44 CST)
aligntool docs?...
- John Stone (Tue Jan 21 2003 - 15:36:56 CST)
- Joshua Speidel (Tue Jan 21 2003 - 15:03:36 CST)
All that I never took the time to ask about VMD ...
- John Stone (Fri Sep 06 2002 - 14:51:50 CDT)
- Marc Baaden (Sat Aug 31 2002 - 07:14:29 CDT)
all within selection
- Guanglei Cui (Thu Aug 11 2005 - 12:32:32 CDT)
- John Stone (Thu Aug 11 2005 - 11:56:29 CDT)
- Guanglei Cui (Thu Aug 11 2005 - 10:55:39 CDT)
allowing negative 'resid' numbers in selection strings
- Vlad Cojocaru (Fri Jan 08 2010 - 09:10:02 CST)
- Axel Kohlmeyer (Fri Jan 08 2010 - 08:49:01 CST)
- Vlad Cojocaru (Fri Jan 08 2010 - 07:56:16 CST)
Altering Definition of Molecular Coloring Method
- Axel Kohlmeyer (Tue Aug 01 2006 - 07:29:44 CDT)
- Adrian Koh (Mon Jul 31 2006 - 23:18:19 CDT)
- Peter Freddolino (Mon Jul 31 2006 - 09:05:16 CDT)
- Adrian Koh (Mon Jul 31 2006 - 05:08:56 CDT)
Altering water sphere and charmm type
- shgnwgn_at_eden.rutgers.edu (Mon Jul 25 2005 - 10:50:50 CDT)
alternative display mode of HBonds
- John Stone (Tue Apr 04 2006 - 14:46:46 CDT)
- Jean Richelle (Tue Apr 04 2006 - 09:51:18 CDT)
AMBER (old ?) nucleic acids names not recognised
- Teletchéa Stéphane (Fri Nov 21 2003 - 03:57:04 CST)
AMBER coordinates with periodic box
- John Stone (Wed Jul 20 2011 - 13:41:23 CDT)
- Guenegou, Guillaume [ORDFR] (Tue Jul 19 2011 - 08:18:44 CDT)
AMBER parmfiles
- John Stone (Mon Mar 17 2003 - 10:06:11 CST)
- Patrick Ladam (Mon Mar 17 2003 - 05:24:31 CST)
Amber patches for Auto PSF generator
- Peter Freddolino (Wed Jun 27 2007 - 12:04:09 CDT)
- Bob Johnson (Wed Jun 27 2007 - 11:55:44 CDT)
AMBER pbsa electrostatic potential map
- John Stone (Tue Apr 19 2005 - 21:16:05 CDT)
- Mengjuei Hsieh (Tue Apr 19 2005 - 18:05:49 CDT)
- John Stone (Tue Apr 19 2005 - 16:11:51 CDT)
- John Stone (Tue Apr 19 2005 - 10:22:21 CDT)
- Alexander Spaar (Tue Apr 19 2005 - 03:58:55 CDT)
- John Stone (Mon Apr 18 2005 - 10:13:39 CDT)
- Mengjuei Hsieh (Fri Apr 15 2005 - 20:09:09 CDT)
Amber periodic images
- John Stone (Thu Apr 29 2004 - 13:52:17 CDT)
- John Stone (Thu Apr 29 2004 - 13:49:52 CDT)
- Jim Shepherd (Thu Apr 29 2004 - 13:41:23 CDT)
- John Stone (Thu Apr 29 2004 - 10:56:26 CDT)
- Xiang, Tian-Xiang (Wed Apr 28 2004 - 10:25:09 CDT)
AMBER prmtop and traj to pqr - radii error
- Jesper Soerensen (Mon Oct 17 2011 - 18:58:53 CDT)
Amber prmtop/inpcrd files
- John Stone (Thu Aug 28 2003 - 15:46:52 CDT)
- John Stone (Thu Jul 31 2003 - 18:01:25 CDT)
- Teletchéa Stéphane (Thu Jul 31 2003 - 15:44:32 CDT)
- caldwell_at_heimdal.compchem.ucsf.edu (Thu Jul 31 2003 - 14:22:12 CDT)
- Teletchéa Stéphane (Thu Jul 31 2003 - 12:49:27 CDT)
- John Stone (Thu Jul 31 2003 - 11:44:38 CDT)
- Anshul Shah (Mon Jul 28 2003 - 17:17:29 CDT)
- Anshul Shah (Mon Jul 28 2003 - 15:45:05 CDT)
amber traj to pqr - radii error
- John Stone (Thu Oct 13 2011 - 10:25:45 CDT)
- Jesper Soerensen (Mon Oct 10 2011 - 15:41:54 CDT)
- Axel Kohlmeyer (Mon Oct 10 2011 - 13:40:51 CDT)
- Jesper Soerensen (Mon Oct 10 2011 - 12:42:30 CDT)
amber trajectory
- John Stone (Wed Jun 18 2003 - 09:55:39 CDT)
- Oscar Moran (Wed Jun 18 2003 - 03:17:58 CDT)
- John Stone (Tue Dec 17 2002 - 23:44:51 CST)
- Ioana Cozmuta (Tue Dec 17 2002 - 23:15:55 CST)
Amber trajectory loading
- John Stone (Wed Apr 21 2004 - 13:22:49 CDT)
- Xiang, Tian-Xiang (Wed Apr 21 2004 - 10:03:48 CDT)
AMBER6 format
- MengJuei Hsieh (Tue Nov 19 2002 - 16:02:55 CST)
- John Stone (Mon Nov 18 2002 - 00:20:19 CST)
- MengJuei Hsieh (Mon Nov 04 2002 - 17:22:44 CST)
- John Stone (Mon Nov 04 2002 - 14:56:12 CST)
- MengJuei Hsieh (Mon Nov 04 2002 - 14:39:52 CST)
AMBER9 netcdf trajectory loading
- John Stone (Wed Jul 26 2006 - 13:27:37 CDT)
- Fabian Boes (Fri Jul 21 2006 - 08:00:30 CDT)
AMD64 vmd installation problems
- John Stone (Wed May 31 2006 - 10:38:54 CDT)
- simon whitehead (Wed May 31 2006 - 04:41:36 CDT)
amd64/nvidiaFX1100/linux crash
- David A. Horita (Tue Oct 05 2004 - 17:19:49 CDT)
- John Stone (Tue Oct 05 2004 - 16:50:30 CDT)
- David A. Horita (Tue Oct 05 2004 - 16:00:07 CDT)
amidated C-terminus and pyroglutamate
- Han Choe (Sat Jan 31 2004 - 04:01:05 CST)
amino acid mutation plugin
- geetha9999_at_aol.com (Thu Feb 11 2010 - 13:37:08 CST)
aminoacid mutation
- Jim Phillips (Tue Oct 28 2003 - 11:08:05 CST)
- Justin Gullingsrud (Tue Oct 28 2003 - 10:55:42 CST)
- Brian Bennion (Tue Oct 28 2003 - 10:22:38 CST)
- Y U Sasidhar (Mon Oct 27 2003 - 22:25:00 CST)
- Ioana Cozmuta (Mon Oct 27 2003 - 18:23:58 CST)
An APBS problem
- John Stone (Fri Jan 27 2006 - 13:56:03 CST)
- Zhiyong Zhang (Thu Jan 26 2006 - 20:38:15 CST)
an arrow for a dipole
- John Stone (Wed Jan 28 2004 - 18:26:45 CST)
- Marcelo A. Carignano (Wed Jan 28 2004 - 13:30:41 CST)
an inconsistance between psf file and coor file after equilibration
- John Stone (Tue May 24 2005 - 11:12:22 CDT)
- Baoqiang Cao (Sun May 22 2005 - 22:28:16 CDT)
an old question
- John Stone (Wed Apr 11 2012 - 13:57:49 CDT)
- PAUL NEWMAN (Tue Apr 10 2012 - 16:22:09 CDT)
- Albert (Tue Apr 10 2012 - 14:23:16 CDT)
- Albert (Tue Apr 10 2012 - 00:08:23 CDT)
- John Stone (Tue Apr 10 2012 - 14:11:51 CDT)
- John Stone (Mon Apr 09 2012 - 23:49:11 CDT)
- Albert (Mon Apr 09 2012 - 23:36:16 CDT)
- John Stone (Mon Apr 09 2012 - 10:30:33 CDT)
- Albert (Sat Apr 07 2012 - 00:28:29 CDT)
an old...old..old..question
- Axel Kohlmeyer (Mon Jan 29 2007 - 18:33:14 CST)
- Tsu-Fan Cheng (Mon Jan 29 2007 - 16:24:16 CST)
An remark on PoV output
- dstrahs_at_pace.edu (Mon May 14 2007 - 17:52:17 CDT)
- John Stone (Mon May 14 2007 - 12:57:26 CDT)
- Szymon Zietkiewicz (Sat May 12 2007 - 06:45:01 CDT)
Anaglyph rendering problem
- Ajasja LjubetiÄ (Mon Sep 13 2010 - 08:55:39 CDT)
- John Stone (Mon Sep 13 2010 - 08:43:16 CDT)
- Ajasja LjubetiÄ (Mon Sep 13 2010 - 03:50:27 CDT)
Anaglyph stereo with other colors
- Luis M. Sánchez (Fri May 04 2012 - 09:45:34 CDT)
- John Stone (Mon Apr 23 2012 - 15:49:37 CDT)
- John Stone (Mon Apr 23 2012 - 15:40:19 CDT)
- Luis M. Sánchez (Sat Apr 21 2012 - 16:56:32 CDT)
- flavio seixas (Sat Apr 21 2012 - 13:36:01 CDT)
- John Stone (Fri Apr 20 2012 - 17:27:39 CDT)
- Luis M. Sánchez (Fri Apr 20 2012 - 08:09:19 CDT)
analysing big trajectories
- Oliver Beckstein (Wed Nov 21 2007 - 19:13:32 CST)
- Thomas Evangelidis (Tue Nov 20 2007 - 18:09:26 CST)
- John Stone (Tue Nov 20 2007 - 16:26:34 CST)
- John Stone (Tue Nov 20 2007 - 14:41:35 CST)
- Oliver Beckstein (Tue Nov 20 2007 - 14:28:45 CST)
analysing big trajectories (fwd)
- Oliver Beckstein (Wed Nov 21 2007 - 19:05:14 CST)
- L. Michel Espinoza-Fonseca (Tue Nov 20 2007 - 18:39:03 CST)
- John Stone (Tue Nov 20 2007 - 18:32:23 CST)
- L. Michel Espinoza-Fonseca (Tue Nov 20 2007 - 18:03:25 CST)
- John Stone (Tue Nov 20 2007 - 17:30:59 CST)
Analysis
- Anthony Cruz (Thu Mar 23 2006 - 14:01:45 CST)
- John Stone (Thu Mar 23 2006 - 10:12:01 CST)
- Anthony Cruz (Thu Mar 23 2006 - 10:20:13 CST)
- Anthony Cruz (Mon Mar 20 2006 - 12:33:53 CST)
- John Stone (Wed Mar 08 2006 - 10:55:49 CST)
- Anthony Cruz (Wed Mar 08 2006 - 13:37:21 CST)
analysis of energy with water excluded from dcd file
- John Stone (Sun May 23 2004 - 15:46:26 CDT)
- li (Mon May 17 2004 - 01:28:40 CDT)
analysis script causes vmd to crash
- Axel Kohlmeyer (Thu Feb 02 2006 - 22:03:15 CST)
- Eliud Oloo (Thu Feb 02 2006 - 19:26:35 CST)
analysis scripts: VMD text /batch mode
- Justin Gullingsrud (Tue Aug 10 2004 - 13:31:01 CDT)
- John Stone (Tue Aug 10 2004 - 13:03:22 CDT)
- Vani Krishna (Tue Aug 10 2004 - 11:46:12 CDT)
Analyzing a 10ns simulation on Mac aborts
- John Stone (Thu Dec 29 2011 - 22:49:32 CST)
- Peter C. Lai (Wed Dec 07 2011 - 01:47:12 CST)
- Anthony Rey (Tue Dec 06 2011 - 23:25:17 CST)
ANALYZING DESMOND OUTPUT IN VMD
- Axel Kohlmeyer (Sun Mar 20 2011 - 15:49:12 CDT)
- shome sankar bhunia (Sun Mar 20 2011 - 03:55:58 CDT)
analyzing gromacs trajectory (.trr) with VMD
- Axel Kohlmeyer (Tue Mar 09 2010 - 04:47:13 CST)
- politr_at_huji.ac.il (Tue Mar 09 2010 - 03:48:24 CST)
Analyzing pdb files remotely with VMD installed locally
- Jindal Shah (Wed Sep 07 2005 - 20:09:32 CDT)
- John Stone (Wed Sep 07 2005 - 16:14:26 CDT)
- Jindal Shah (Wed Sep 07 2005 - 11:54:00 CDT)
- Michel Espinoza-Fonseca (Wed Sep 07 2005 - 11:48:02 CDT)
- John Stone (Wed Sep 07 2005 - 11:33:09 CDT)
- Jindal Shah (Wed Sep 07 2005 - 11:25:50 CDT)
Andres Morales sent you a little gift
- Andres Morales (Sun Apr 11 2010 - 20:33:52 CDT)
Android support
- John Stone (Sun Mar 06 2011 - 15:44:09 CST)
- John Stone (Sun Mar 06 2011 - 15:28:46 CST)
- John Stone (Sun Mar 06 2011 - 13:39:44 CST)
- Dow Hurst (Sun Mar 06 2011 - 13:55:02 CST)
- Axel Kohlmeyer (Sun Mar 06 2011 - 12:38:38 CST)
- Dow Hurst (Sun Mar 06 2011 - 11:24:15 CST)
angle between protein domains:
- PARMINDER MANKOO (Tue Jun 26 2007 - 15:46:02 CDT)
angle between two domains connected at a hinge
- sajad falsafi (Fri Jul 15 2011 - 11:51:28 CDT)
- maria goranovic (Fri Jul 15 2011 - 08:35:52 CDT)
angle between two vectors
- Luis Gracia (Wed Jan 12 2005 - 12:31:58 CST)
- John Stone (Tue Jan 11 2005 - 19:05:43 CST)
- Ekta Khurana (Tue Jan 11 2005 - 18:56:54 CST)
angle calculation trajectory
- sajad falsafi (Wed Oct 19 2011 - 01:11:39 CDT)
- Axel Kohlmeyer (Tue Oct 18 2011 - 13:22:15 CDT)
- Peyman Z.Moghadam (Tue Oct 18 2011 - 12:28:16 CDT)
angles
- John Stone (Thu Jul 29 2004 - 10:53:38 CDT)
- pinisetty dinesh (Wed Jul 28 2004 - 21:11:12 CDT)
Angles and dihedral generation
- Cesar Luis Avila (Tue Sep 05 2006 - 08:15:18 CDT)
- Jim Phillips (Mon Sep 04 2006 - 16:44:44 CDT)
- Cesar Luis Avila (Mon Sep 04 2006 - 10:00:35 CDT)
- Jim Phillips (Sat Sep 02 2006 - 15:25:12 CDT)
- Cesar Luis Avila (Fri Sep 01 2006 - 20:02:36 CDT)
ANGLES and DIHEDRALS ... location in VMD code?
- Javier Goicochea (Mon Feb 02 2009 - 08:33:15 CST)
- John Stone (Fri Jan 16 2009 - 09:31:01 CST)
- Javier Goicochea (Fri Jan 16 2009 - 02:17:00 CST)
angles and dihedrals in .psf file
- Axel Kohlmeyer (Thu May 21 2009 - 11:28:15 CDT)
- KIRTANA S (Thu May 21 2009 - 10:45:51 CDT)
Angles in psf file
- KIRTANA S (Tue May 26 2009 - 15:05:20 CDT)
Animate data
- Nguyen Hoang Phuong (Fri Apr 26 2002 - 12:31:38 CDT)
animate delete
- John Stone (Fri Jul 11 2003 - 10:20:11 CDT)
- Hannes Loeffler (Fri Jul 11 2003 - 01:37:45 CDT)
animate error handling
- John Stone (Fri Dec 09 2005 - 09:50:32 CST)
- Jérôme Hénin (Fri Dec 09 2005 - 05:04:52 CST)
animate read and write
- A D (Wed Apr 22 2009 - 15:36:00 CDT)
- John Stone (Wed Apr 22 2009 - 15:42:24 CDT)
animate read command
- Jim Pfaendtner (Tue Feb 05 2008 - 13:55:29 CST)
- John Stone (Tue Feb 05 2008 - 14:16:00 CST)
Animate the "beta" field
- John Stone (Mon Jun 21 2004 - 14:17:38 CDT)
- emmanuel.levy1_at_free.fr (Sat May 29 2004 - 14:05:16 CDT)
animate transparency
- Axel Kohlmeyer (Fri Jan 06 2006 - 07:07:43 CST)
- Yu Chen (Thu Jan 05 2006 - 15:07:37 CST)
animate with varying atom numbers
- Axel Kohlmeyer (Sat Jun 10 2006 - 04:55:47 CDT)
- Rene (Fri Jun 09 2006 - 12:53:59 CDT)
animate write of a selection in Linux version of VMD
- Pawel Weronski (Wed Jan 31 2007 - 16:24:02 CST)
- John Stone (Wed Jan 31 2007 - 16:10:46 CST)
- Pawel Weronski (Wed Jan 31 2007 - 15:54:25 CST)
animated colors, trajectories, etc..
- John Stone (Tue Feb 19 2002 - 18:41:02 CST)
animated gif
- Peter Freddolino (Mon Oct 20 2008 - 07:01:18 CDT)
- Panagiota Georgoulia (Mon Oct 20 2008 - 06:37:32 CDT)
animated gif option in VMD for Windows.
- John Stone (Thu Aug 24 2006 - 15:00:01 CDT)
- Axel Kohlmeyer (Thu Aug 24 2006 - 14:45:53 CDT)
- Ravinder Abrol (Thu Aug 24 2006 - 14:14:58 CDT)
animating an iso-surface
- Axel Kohlmeyer (Wed May 26 2004 - 15:48:49 CDT)
- Randall Hall (Wed May 26 2004 - 13:18:03 CDT)
animating drawn objects
- John Stone (Thu Apr 01 2004 - 13:26:17 CST)
- Vlad Cojocaru (Thu Apr 01 2004 - 10:20:56 CST)
Animating Trajectories/NAMD Output files
- Barry Isralewitz (Wed May 08 2002 - 11:37:05 CDT)
- Storr, Mark (Wed May 08 2002 - 11:16:23 CDT)
- Barry Isralewitz (Wed May 08 2002 - 11:01:26 CDT)
- Barry Isralewitz (Tue May 07 2002 - 22:15:21 CDT)
- Storr, Mark (Tue May 07 2002 - 13:06:43 CDT)
Animation
- John Stone (Wed Apr 10 2002 - 09:18:24 CDT)
- Paul Hubbard (Tue Apr 09 2002 - 15:09:40 CDT)
- Justin Gullingsrud (Tue Apr 09 2002 - 14:36:36 CDT)
- John Stone (Tue Apr 09 2002 - 14:24:36 CDT)
- Paul Hubbard (Tue Apr 09 2002 - 14:12:49 CDT)
- Simon Hogg (Wed Aug 30 2000 - 19:13:17 CDT)
- John Stone (Wed Aug 30 2000 - 13:00:24 CDT)
- B. Bennion (Wed Aug 30 2000 - 11:47:25 CDT)
- John Stone (Wed Aug 30 2000 - 11:06:03 CDT)
- spezia_at_caspur.it (Tue Aug 29 2000 - 09:26:07 CDT)
animation and reps
- Aitor Gonzalez (Mon Apr 09 2001 - 08:17:52 CDT)
- Justin Gullingsrud (Wed Apr 04 2001 - 14:15:19 CDT)
- John Stone (Sat Mar 31 2001 - 11:02:23 CST)
- B. Bennion (Sat Mar 31 2001 - 01:40:43 CST)
animation from files with different numbers of atoms
- Justin Gullingsrud (Sat Jun 22 2002 - 17:07:56 CDT)
- Jennifer Young (Sat Jun 22 2002 - 16:21:01 CDT)
animation of an atom diffusion inside a bulk crystal
- Axel Kohlmeyer (Fri Feb 01 2008 - 05:01:33 CST)
- massimo camarda (Fri Feb 01 2008 - 02:27:59 CST)
animation question
- #WONG CHEE HOW# (Fri Mar 28 2003 - 00:10:24 CST)
- John Stone (Thu Mar 27 2003 - 22:51:57 CST)
- Randall Hall (Thu Mar 27 2003 - 12:37:35 CST)
animation with PDBs
- John Stone (Thu Nov 07 2002 - 10:33:26 CST)
- Ross J. Toedte (Thu Nov 07 2002 - 10:10:09 CST)
animation with variable number/names of atoms
- Axel Kohlmeyer (Tue May 04 2010 - 07:40:37 CDT)
- Maxim Paliy. (Mon May 03 2010 - 19:05:44 CDT)
- Axel Kohlmeyer (Mon May 03 2010 - 16:47:05 CDT)
- John Stone (Mon May 03 2010 - 14:46:34 CDT)
- Maxim Paliy. (Mon May 03 2010 - 09:10:58 CDT)
animations with molecular surfaces
- John Stone (Mon Jun 24 2002 - 14:17:12 CDT)
- Will Sheffler (Sat Jun 22 2002 - 02:32:12 CDT)
ANN: BioCoRE now includes remote job submission
- biocore_at_ks.uiuc.edu (Fri Mar 30 2001 - 13:26:32 CST)
Announce VMD 1.9 released
- John Stone (Mon Mar 14 2011 - 16:49:37 CDT)
Announce: CPMD VMD visualization tutorial
- Axel Kohlmeyer (Thu Dec 18 2003 - 13:25:56 CST)
Announce: JMV version 0.7 is available!
- John Stone (Fri Nov 02 2001 - 15:30:28 CST)
- John Stone (Tue Oct 30 2001 - 16:15:33 CST)
Announce: MDTools update
- John Stone (Thu Nov 30 2000 - 14:51:44 CST)
Announce: New VMD Images and Movies tutorial posted online...
- John Stone (Wed Jan 31 2007 - 00:23:46 CST)
Announce: new vmdmovie script available...
- John Stone (Mon Apr 08 2002 - 22:23:01 CDT)
Announce: Struc. Bio. Software DB updates
- John Stone (Thu Dec 06 2001 - 11:21:57 CST)
Announce: Structural Biology Software Database
- John Stone (Thu Jan 04 2001 - 14:04:34 CST)
Announce: Updated VMD 1.8 plugins available
- John Stone (Fri Feb 14 2003 - 16:47:39 CST)
Announce: VMD 1.4 beta 1
- John Stone (Mon Oct 04 1999 - 17:07:49 CDT)
Announce: VMD 1.4 beta 2
- John Stone (Tue Nov 09 1999 - 15:19:35 CST)
Announce: VMD 1.4 beta 3
- John Stone (Thu Nov 18 1999 - 16:08:16 CST)
Announce: VMD 1.4 beta 4
- John Stone (Wed Dec 22 1999 - 16:40:53 CST)
Announce: VMD 1.6 Released
- John Stone (Fri Dec 22 2000 - 17:17:04 CST)
Announce: VMD 1.6.1 Released!
- John Stone (Tue Apr 24 2001 - 10:03:39 CDT)
Announce: VMD 1.6.1a2 is available
- John Stone (Mon Mar 05 2001 - 15:17:19 CST)
Announce: VMD 1.6.1a3 is available
- John Stone (Mon Mar 12 2001 - 17:46:34 CST)
Announce: VMD 1.6a1 is available
- Kim Branson (Sun Aug 27 2000 - 23:13:24 CDT)
- John Stone (Thu Aug 24 2000 - 18:43:53 CDT)
Announce: VMD 1.6a2 is available
- John Stone (Thu Sep 14 2000 - 02:38:08 CDT)
Announce: VMD 1.6a3 is available
- John Stone (Fri Oct 06 2000 - 14:37:27 CDT)
Announce: VMD 1.6a4 is available
- John Stone (Tue Nov 21 2000 - 00:19:42 CST)
Announce: VMD 1.7 Released!!
- John Stone (Thu Aug 02 2001 - 14:26:09 CDT)
Announce: VMD 1.7.1 released!
- John Stone (Sun Dec 23 2001 - 22:53:26 CST)
Announce: VMD 1.7.1b1 test version is available...
- John Stone (Sat Dec 22 2001 - 21:56:00 CST)
- John Stone (Wed Dec 05 2001 - 21:14:37 CST)
Announce: VMD 1.7.2 (Windows-only GUI update) is available
- John Stone (Wed Feb 06 2002 - 19:07:55 CST)
Announce: VMD 1.7b1 is available!
- John Stone (Tue Jul 10 2001 - 18:15:45 CDT)
Announce: VMD 1.7b2 is available!
- John Stone (Wed Jul 25 2001 - 10:12:11 CDT)
Announce: VMD 1.8 is available!
- John Stone (Mon Dec 09 2002 - 15:22:28 CST)
Announce: VMD 1.8.1 released!!
- John Stone (Sun Jun 15 2003 - 23:37:12 CDT)
- MengJuei Hsieh (Sun Jun 15 2003 - 22:47:23 CDT)
- John Stone (Sun Jun 15 2003 - 15:38:19 CDT)
Announce: VMD 1.8.2 released!!
- John Stone (Fri Dec 05 2003 - 14:53:13 CST)
Announce: VMD 1.8.3 released!!
- John Stone (Wed Feb 16 2005 - 00:09:04 CST)
Announce: VMD 1.8.4 Released!!
- John Stone (Mon Apr 17 2006 - 11:37:34 CDT)
Announce: VMD 1.8.5 Released!
- John Stone (Fri Aug 25 2006 - 23:51:22 CDT)
Announce: VMD 1.8.6 Released!
- John Stone (Sun Apr 08 2007 - 00:51:52 CDT)
Announce: VMD 1.8.7 released
- John Stone (Mon Aug 03 2009 - 14:21:59 CDT)
Announce: VMD 1.9.1 released
- John Stone (Sat Feb 04 2012 - 14:25:58 CST)
Announce: VMD at Super Computing 99
- Kirby Vandivort (Thu Nov 11 1999 - 16:32:51 CST)
Announce: VMD Users Image Gallery
- John Stone (Thu Feb 22 2001 - 13:43:31 CST)
Announce: ZoomSeq -- sequence browser for VMD
- Barry Isralewitz (Thu Dec 28 2000 - 14:54:20 CST)
ANNOUNCEMENT: BioCoRe
- Robert Brunner (Fri Mar 03 2000 - 10:22:28 CST)
Announcement: QM/MM Workshop
- Axel Kohlmeyer (Thu Apr 19 2007 - 09:14:50 CDT)
Announcing MDSalon!
- Jim Phillips (Tue Nov 21 2000 - 15:15:21 CST)
Another feature request for vmd 1.8
- John Stone (Wed Oct 30 2002 - 10:41:11 CST)
- David Chalmers (Mon Oct 28 2002 - 20:02:15 CST)
another trivial question regarding the key setting.
- Justin Gullingsrud (Mon Mar 25 2002 - 10:26:37 CST)
- John Stone (Mon Mar 25 2002 - 09:07:14 CST)
- Margaret Cheung (Mon Mar 25 2002 - 06:28:09 CST)
antechamber for Windows
- John Stone (Fri May 27 2011 - 15:16:20 CDT)
- Keith Battle (Fri May 20 2011 - 12:48:21 CDT)
antialiasing
- Axel Kohlmeyer (Wed Sep 13 2006 - 14:10:30 CDT)
- John Stone (Wed Sep 13 2006 - 14:07:44 CDT)
- Wen Li (Wed Sep 13 2006 - 14:00:02 CDT)
- Axel Kohlmeyer (Wed Sep 13 2006 - 13:56:38 CDT)
- Wen Li (Wed Sep 13 2006 - 13:36:53 CDT)
Antialiasing ?
- Stéphane Teletchéa (Thu Oct 24 2002 - 02:16:35 CDT)
- John Stone (Wed Oct 23 2002 - 10:07:15 CDT)
- Marc Baaden (Wed Oct 23 2002 - 08:45:22 CDT)
antialiasing problem
- Eamon Caddigan (Thu Nov 20 2003 - 15:15:00 CST)
- ailong (Thu Nov 20 2003 - 12:54:22 CST)
any body else have VMD problems with Linux + ATI FireGL X1-256p + fglrx-glc22-4.3.0-3.7.0
- John Stone (Wed Feb 11 2004 - 20:02:26 CST)
- John Stone (Wed Feb 11 2004 - 18:33:51 CST)
- Dallas Warren (Wed Feb 11 2004 - 17:14:28 CST)
- chris.harwell_at_pharma.novartis.com (Wed Feb 11 2004 - 16:16:46 CST)
Any Mac (Intel) users still running 10.4.x???
- John Stone (Mon Apr 06 2009 - 11:34:31 CDT)
- John Stone (Sun Apr 05 2009 - 10:13:08 CDT)
Any methods for real stereo viewing with Mac and OsX
- Peter Engelhardt (Sat Nov 06 2004 - 16:51:32 CST)
- John Stone (Sat Nov 06 2004 - 12:41:30 CST)
- Peter Engelhardt (Sat Nov 06 2004 - 13:19:33 CST)
Any way for comparing two structures??
- Luis Gracia (Tue May 31 2005 - 14:07:45 CDT)
- Blake Charlebois (Tue May 31 2005 - 10:50:32 CDT)
- Dmitry Osolodkin (Tue May 31 2005 - 09:11:07 CDT)
- Dmitry Osolodkin (Tue May 31 2005 - 08:58:29 CDT)
Any way to output contact map data
- Luis Gracia (Wed Mar 21 2007 - 11:12:32 CDT)
- Guo Zhi (Wed Mar 21 2007 - 03:32:37 CDT)
- John Stone (Wed Mar 21 2007 - 01:42:15 CDT)
- Guo Zhi (Tue Mar 20 2007 - 09:18:03 CDT)
Anyone have catdcd-4.0 for BlueGene?
- Axel Kohlmeyer (Mon Jan 08 2007 - 16:36:38 CST)
- John Stone (Mon Jan 08 2007 - 15:41:10 CST)
- Joshua D. Moore (Mon Jan 08 2007 - 15:34:09 CST)
Anyone have cyclic structures I can use for testing?
- John Stone (Tue Feb 20 2007 - 01:28:29 CST)
Anyone using ATI X1600?
- Christoph Weber (Mon Jul 17 2006 - 16:18:00 CDT)
- John Stone (Mon Jul 17 2006 - 11:17:25 CDT)
- Christoph Weber (Fri Jul 14 2006 - 18:35:35 CDT)
- John Stone (Thu Jul 13 2006 - 10:42:38 CDT)
- Yu Zhou (Thu Jul 13 2006 - 07:39:59 CDT)
APBS data visualization
- Vlad Cojocaru (Tue Jan 25 2005 - 13:08:23 CST)
APBS dx colors depend on order of molec files loaded???
- John Stone (Thu Oct 18 2007 - 15:08:21 CDT)
- Chari, Ravi (Thu Oct 18 2007 - 14:52:48 CDT)
apbs electrostatics
- John Stone (Wed Sep 17 2008 - 21:42:28 CDT)
- James Haven (Wed Sep 17 2008 - 15:15:08 CDT)
APBS error
- Vlad Cojocaru (Thu Feb 17 2005 - 08:24:07 CST)
- Armen Nalian (Wed Feb 16 2005 - 18:58:54 CST)
APBS error : Cannot read output file
- Navendu bhatnagar (Tue Jun 02 2009 - 09:51:01 CDT)
- John Stone (Tue Jun 02 2009 - 09:55:51 CDT)
APBS for small molecules
- jcorradi_at_criba.edu.ar (Tue May 15 2012 - 13:31:15 CDT)
- George Tzotzos (Tue May 15 2012 - 11:01:03 CDT)
- Axel Kohlmeyer (Tue May 15 2012 - 09:22:02 CDT)
- jcorradi_at_criba.edu.ar (Tue May 15 2012 - 08:28:28 CDT)
- Axel Kohlmeyer (Tue May 15 2012 - 00:41:56 CDT)
- jcorradi_at_criba.edu.ar (Sun May 13 2012 - 22:00:08 CDT)
APBS installation problem
- Axel Kohlmeyer (Wed Jun 22 2011 - 13:17:30 CDT)
- Sangita Kachhap (Wed Jun 22 2011 - 12:44:34 CDT)
- Sangita Kachhap (Wed Jun 22 2011 - 11:23:19 CDT)
APBS plugin
- Sladjana Maric (Thu Jun 03 2010 - 11:50:33 CDT)
- John Stone (Thu Jun 03 2010 - 11:37:06 CDT)
- Sladjana Maric (Thu May 27 2010 - 18:16:15 CDT)
- Nathan C. Rockwell (Thu Dec 08 2005 - 15:17:48 CST)
- John Stone (Thu Dec 08 2005 - 11:16:19 CST)
- Anthony Cruz (Thu Dec 08 2005 - 14:07:37 CST)
- John Stone (Thu Dec 08 2005 - 10:14:01 CST)
- Mamoru Yamanishi (Wed Dec 07 2005 - 21:48:56 CST)
- John Stone (Wed Dec 07 2005 - 17:08:21 CST)
- Mamoru Yamanishi (Wed Dec 07 2005 - 14:18:48 CST)
- Anthony Cruz (Wed Dec 07 2005 - 14:06:06 CST)
- John Stone (Tue Jan 25 2005 - 11:22:53 CST)
- Vlad Cojocaru (Tue Jan 25 2005 - 09:36:11 CST)
APBS Plugin for VMD
- Eamon Caddigan (Mon Feb 23 2004 - 14:14:33 CST)
APBS plugin, created file pot-PE0.dx
- John Stone (Fri May 27 2011 - 14:43:04 CDT)
- Ricardo Oliveira dos Santos Soares (Tue May 24 2011 - 13:39:56 CDT)
- John Stone (Mon May 23 2011 - 15:12:51 CDT)
- Ricardo Oliveira dos Santos Soares (Mon May 23 2011 - 14:55:00 CDT)
APBS tutorial link broken
- Irene Newhouse (Thu Jan 14 2010 - 17:01:14 CST)
- John Stone (Thu Jan 14 2010 - 17:11:56 CST)
apbs with vmd, no output
- John Stone (Thu Jun 02 2011 - 09:44:03 CDT)
- John Stone (Tue May 10 2011 - 15:09:39 CDT)
- Asmaa Elsheshiny (Tue May 10 2011 - 12:14:08 CDT)
apocynin/1k4u
- Ajasja LjubetiÄ (Tue Dec 07 2010 - 10:31:25 CST)
- John Stone (Tue Dec 07 2010 - 09:23:57 CST)
- vani panguluri (Mon Dec 06 2010 - 13:50:06 CST)
Apologies
- Lucas Fernandez Seivane (Tue Feb 03 2009 - 17:34:58 CST)
- Adrain Koh (Wed Nov 10 2004 - 04:12:55 CST)
Apologizes for "How to select some sugar atoms"
- Jean Richelle (Fri Apr 21 2006 - 00:23:40 CDT)
append glow lights to a VMD/Tachyon scene
- Axel Kohlmeyer (Fri Feb 17 2012 - 08:11:53 CST)
- Filip Persson (Fri Feb 17 2012 - 03:11:53 CST)
append pdb
- Axel Kohlmeyer (Sun May 16 2010 - 11:00:52 CDT)
- politr_at_huji.ac.il (Sun May 16 2010 - 09:48:19 CDT)
Appending to DCD file with "animate write"
- Chang, Christopher (Wed Nov 16 2005 - 17:05:41 CST)
- John Stone (Wed Nov 16 2005 - 15:01:02 CST)
- Chang, Christopher (Wed Nov 16 2005 - 13:42:36 CST)
- Chang, Christopher (Wed Nov 16 2005 - 13:11:30 CST)
Apple hardware configuration
- John Stone (Thu Mar 03 2005 - 15:46:17 CST)
- John Stone (Mon Feb 28 2005 - 10:48:25 CST)
- fabrizio cleri (Sat Feb 26 2005 - 02:32:42 CST)
- fabrizio cleri (Fri Feb 25 2005 - 05:29:24 CST)
Apple VMD not showing gro file properly
- John Stone (Fri Feb 13 2004 - 10:52:02 CST)
- Justin Gullingsrud (Fri Feb 13 2004 - 09:50:21 CST)
- Jim Nettles (Thu Feb 12 2004 - 23:25:20 CST)
- John Stone (Thu Feb 12 2004 - 17:22:02 CST)
- John Stone (Tue Feb 10 2004 - 09:56:58 CST)
- barrett (Tue Feb 10 2004 - 07:56:50 CST)
Application Error while use of Auto PSF Builder
- Axel Kohlmeyer (Sun Feb 20 2011 - 09:42:19 CST)
- Sebastian Wilhelm (Sun Feb 20 2011 - 07:54:35 CST)
applying 6dof input forces
- wmsmith (Mon Jul 11 2005 - 12:03:52 CDT)
- wmsmith (Tue Jul 05 2005 - 17:10:09 CDT)
- Charles Moad (Tue Jul 05 2005 - 16:13:02 CDT)
applying forces on a protein in VMD
- John Stone (Wed Dec 05 2007 - 00:58:14 CST)
- Peter Schellenberg (Tue Dec 04 2007 - 02:05:58 CST)
April promo on w4tches
- Randell Lund (Mon Mar 31 2008 - 22:03:54 CDT)
aquire coordinates from the points of the solvent representation
- John Stone (Sat Nov 21 2009 - 01:01:15 CST)
- Axel Kohlmeyer (Fri Nov 20 2009 - 13:23:11 CST)
- Nuno Sousa Cerqueira (Thu Nov 19 2009 - 13:53:40 CST)
Arbitrary values of isosurface
- John Stone (Thu Oct 22 2009 - 17:10:14 CDT)
- Axel Kohlmeyer (Mon Oct 19 2009 - 08:58:17 CDT)
- aizoon_at_gmx.net (Mon Oct 19 2009 - 06:25:32 CDT)
Archived Spam in the VMD-L Mailing List
- John Stone (Tue Aug 14 2007 - 10:13:27 CDT)
- Audrey Salazar (Tue Aug 14 2007 - 10:00:30 CDT)
- John Stone (Tue Aug 14 2007 - 10:07:37 CDT)
area of protein cross sections
- dimka (Mon Aug 15 2005 - 14:29:38 CDT)
area per lipid
- Andrés Morales (Thu Oct 20 2011 - 01:12:14 CDT)
- snoze pa (Thu Feb 24 2011 - 12:35:30 CST)
- Saladino, Alex (Thu Aug 26 2004 - 11:00:55 CDT)
Ask the Cluster Expert
- Nick I (Tue Oct 25 2005 - 11:45:59 CDT)
Aspen Center for Physics 2013 Workshop
- MARK PLUMMER (Tue May 22 2012 - 14:58:42 CDT)
Assign velocities so I can color by velocity
- Joshua D. Moore (Mon Dec 19 2011 - 20:54:02 CST)
- Axel Kohlmeyer (Mon Dec 19 2011 - 12:32:34 CST)
- Axel Kohlmeyer (Mon Dec 19 2011 - 12:05:45 CST)
- Joshua D. Moore (Mon Dec 19 2011 - 12:26:57 CST)
- Alexander Balaeff (Mon Dec 19 2011 - 11:37:36 CST)
- Joshua D. Moore (Mon Dec 19 2011 - 10:48:36 CST)
Assigning Color Codes for stress/force in .xyz trajectory files
- Peter Freddolino (Fri Feb 09 2007 - 10:48:49 CST)
- Peter Freddolino (Fri Feb 09 2007 - 07:57:09 CST)
- John Stone (Fri Feb 09 2007 - 02:56:59 CST)
- Adrian Koh (Fri Feb 09 2007 - 00:08:26 CST)
assigning variable names using a for loop
- Olaf Lenz (Thu Mar 29 2007 - 04:38:08 CDT)
- namd vmd (Thu Mar 29 2007 - 03:21:45 CDT)
assigning variables for representations
- John Stone (Thu Sep 05 2002 - 13:53:27 CDT)
- Vlad Cojocaru (Wed Sep 04 2002 - 07:10:40 CDT)
assignment of "measure contacts" output to tcl variables
- Vlad Cojocaru (Tue Apr 17 2007 - 09:50:49 CDT)
- Vlad Cojocaru (Tue Apr 17 2007 - 07:25:19 CDT)
Associating .crd file extension with COR Plugin
- Axel Kohlmeyer (Wed Sep 28 2011 - 08:51:38 CDT)
- Jernej Zidar (Tue Sep 27 2011 - 22:34:53 CDT)
- Vadim Patsalo (Tue Sep 27 2011 - 21:08:31 CDT)
Associating .crd file extension with COR Plugin.
- Vadim Patsalo (Tue Sep 27 2011 - 16:58:50 CDT)
Asymmetric water molecule
- Jérôme Hénin (Wed Nov 03 2010 - 05:03:40 CDT)
- Stefan Franzen (Wed Nov 03 2010 - 02:11:22 CDT)
athlon64 version of vmd
- John Stone (Fri Mar 05 2004 - 17:39:47 CST)
- Brian Bennion (Fri Mar 05 2004 - 16:30:57 CST)
- Jerry Ebalunode (Fri Mar 05 2004 - 13:08:52 CST)
ATI 3.7.6 driver bugs (and VMD..)
- John Stone (Wed May 05 2004 - 16:46:01 CDT)
ATI crashes, use of setenv VMD_EXCL_GL_EXTENSIONS
- Dr. Peter Schellenberg (Mon Jun 06 2005 - 02:28:21 CDT)
ATI fglrx 3.11 drivers for Radeon 8500 LE with linux 2.6 kernel, quad buffered stereo on sony G520???
- John Stone (Wed Aug 25 2004 - 09:23:09 CDT)
- Dr. Daniel James White PhD (Wed Aug 25 2004 - 03:44:24 CDT)
ati interlace mode
- Osmany guirola Cruz (Sat May 20 2006 - 14:52:25 CDT)
- John Stone (Fri May 19 2006 - 11:45:48 CDT)
- Sabuj Pattanayek (Thu May 18 2006 - 20:54:06 CDT)
- John Stone (Thu May 18 2006 - 18:32:03 CDT)
- Sabuj Pattanayek (Wed May 17 2006 - 16:44:11 CDT)
- Osmany guirola Cruz (Wed May 17 2006 - 13:45:54 CDT)
- John Stone (Wed May 17 2006 - 13:07:24 CDT)
- Osmany guirola Cruz (Tue May 16 2006 - 14:13:55 CDT)
- John Stone (Tue May 16 2006 - 10:47:03 CDT)
- Osmany guirola Cruz (Tue May 16 2006 - 07:33:00 CDT)
- Sabuj Pattanayek (Mon May 15 2006 - 17:00:20 CDT)
- Osmany guirola Cruz (Mon May 15 2006 - 10:03:44 CDT)
- John Stone (Mon May 15 2006 - 12:01:50 CDT)
- Osmany guirola Cruz (Fri May 12 2006 - 12:12:42 CDT)
ATI radeon 8500 and Linux quad buffered stereo
- Dr. Daniel James White PhD (Tue Sep 02 2003 - 03:09:28 CDT)
ati radeon 9200
- Osmany Guirola Cruz (Thu Dec 22 2005 - 14:58:33 CST)
- John Stone (Thu Dec 22 2005 - 10:18:17 CST)
- Osmany Guirola Cruz (Thu Dec 22 2005 - 10:00:07 CST)
ATI radeon x300
- John Stone (Fri Apr 01 2005 - 14:06:16 CST)
- jerry xu (Fri Apr 01 2005 - 12:42:59 CST)
atom coloring
- Laurence F. Wood (Tue Mar 12 2002 - 16:39:37 CST)
- Paul Grayson (Tue Mar 12 2002 - 14:33:29 CST)
- Dominik Horinek (Mon Mar 11 2002 - 17:59:30 CST)
Atom distances from trajotory
- bo baker (Sat Feb 14 2009 - 17:16:27 CST)
- Peter Freddolino (Sat Feb 14 2009 - 08:01:53 CST)
- Peter Freddolino (Fri Feb 13 2009 - 09:33:01 CST)
- bo baker (Thu Feb 12 2009 - 23:50:21 CST)
- Peter Freddolino (Thu Feb 12 2009 - 07:40:14 CST)
- bo baker (Thu Feb 12 2009 - 03:27:20 CST)
atom fitting in non-PDB order
- James Melville (Mon Feb 07 2005 - 21:27:47 CST)
Atom ID/Color change with timesteps
- Axel Kohlmeyer (Thu May 12 2011 - 16:21:21 CDT)
- Adkins, Laura R (Thu May 12 2011 - 16:04:26 CDT)
- Axel Kohlmeyer (Thu May 12 2011 - 13:54:23 CDT)
- Axel Kohlmeyer (Wed May 11 2011 - 19:58:38 CDT)
- Adkins, Laura R (Wed May 11 2011 - 19:17:05 CDT)
atom index number
- Axel Kohlmeyer (Thu Sep 27 2007 - 02:42:42 CDT)
- Naser, Md Abu (Thu Sep 27 2007 - 01:28:29 CDT)
atom index starting at 0
- John Stone (Thu Aug 11 2005 - 16:19:57 CDT)
- John Stone (Mon Jan 10 2005 - 18:38:51 CST)
- Andrew Dalke (Fri Jan 07 2005 - 17:36:50 CST)
- John Stone (Fri Jan 07 2005 - 16:10:41 CST)
- pl (Fri Jan 07 2005 - 09:47:00 CST)
Atom movement within a range of Z value
- muniyamuthu.raviprasad_at_ndsu.edu (Tue May 11 2010 - 14:47:15 CDT)
atom name can not exceed four characters in pdb and psf?
- Axel Kohlmeyer (Mon Jun 29 2009 - 22:32:22 CDT)
- accomp lin (Mon Jun 29 2009 - 21:59:36 CDT)
Atom name label
- John Stone (Wed Mar 08 2006 - 09:42:02 CST)
- FyD (Wed Mar 08 2006 - 04:26:17 CST)
Atom names, RES-IDS...!!!
- JC Gumbart (Mon Jun 04 2007 - 18:18:45 CDT)
- Raul Araya (Fri Jun 01 2007 - 23:55:33 CDT)
ATOM or HETATM record
- Joseph E. Curtis (Fri Jan 07 2005 - 16:46:16 CST)
atom position update for reference atom list
- John Stone (Mon Jun 18 2007 - 16:43:13 CDT)
- Philipp Schoen1 (Wed Jun 13 2007 - 08:28:30 CDT)
Atom renumbering in DCD file
- Chang, Christopher (Tue Aug 09 2005 - 14:15:03 CDT)
- Justin Gullingsrud (Tue Aug 09 2005 - 13:30:08 CDT)
- John Stone (Mon Aug 08 2005 - 19:08:03 CDT)
- Chang, Christopher (Mon Aug 08 2005 - 18:48:33 CDT)
atom selection
- Axel Kohlmeyer (Mon Sep 21 2009 - 14:22:08 CDT)
- Myunggi Yi (Mon Sep 21 2009 - 14:02:49 CDT)
- Myunggi Yi (Mon Sep 21 2009 - 13:45:20 CDT)
- Myunggi Yi (Mon Sep 21 2009 - 13:57:29 CDT)
- Eric H. Lee (Sun Jun 07 2009 - 23:46:39 CDT)
- Deepti Mishra (Sun Jun 07 2009 - 23:32:43 CDT)
- Joaquim Rui Rodrigues (Wed Dec 03 2008 - 11:44:55 CST)
- Leonardo Trabuco (Wed Dec 03 2008 - 11:10:53 CST)
- aneesh cna (Wed Dec 03 2008 - 05:32:57 CST)
Atom selection based on arbitrary columns in the pdb file
- Peter Freddolino (Sat Aug 05 2006 - 15:17:21 CDT)
- Axel Kohlmeyer (Sat Aug 05 2006 - 12:05:51 CDT)
- Shatadal Ghosh (Sat Aug 05 2006 - 11:04:57 CDT)
Atom Selection for RDF
- Axel Kohlmeyer (Sat May 22 2010 - 12:46:48 CDT)
- Amir Hajiahmadi Farmahini (Sat May 22 2010 - 12:15:36 CDT)
- Amir Hajiahmadi Farmahini (Sat May 22 2010 - 09:19:18 CDT)
- Axel Kohlmeyer (Sat May 22 2010 - 10:25:06 CDT)
atom selection in vmd
- Alex Liu (Mon Nov 22 2010 - 16:16:45 CST)
- Ignacio Fernández Galván (Wed Nov 17 2010 - 12:30:59 CST)
- Ajasja LjubetiÄ (Wed Nov 17 2010 - 10:25:55 CST)
- Axel Kohlmeyer (Wed Nov 17 2010 - 09:56:35 CST)
- Alex Liu (Wed Nov 17 2010 - 08:49:55 CST)
atom serial number
- Peter Freddolino (Sun Jul 01 2007 - 13:40:52 CDT)
- Francesco Pietra (Sun Jul 01 2007 - 02:33:20 CDT)
Atom sorting according to resid
- andrea carotti (Wed Oct 21 2009 - 10:16:33 CDT)
- Axel Kohlmeyer (Wed Oct 21 2009 - 11:21:58 CDT)
atom type
- bo liu (Fri Oct 03 2008 - 06:51:22 CDT)
- Rudra Banerjee (Thu Oct 02 2008 - 22:57:47 CDT)
- Axel Kohlmeyer (Thu Oct 02 2008 - 13:16:47 CDT)
- Rudra Banerjee (Thu Oct 02 2008 - 12:14:25 CDT)
- Boris Steipe (Wed Oct 01 2008 - 11:37:48 CDT)
- Rudra Banerjee (Tue Sep 30 2008 - 23:28:58 CDT)
Atom typing
- Justin Gullingsrud (Tue Mar 30 2004 - 14:59:54 CST)
- Kooser, Ara S (Tue Mar 30 2004 - 12:24:30 CST)
atom velocity arrows
- John Stone (Wed Mar 12 2003 - 15:24:31 CST)
- John Stone (Wed Mar 12 2003 - 13:45:21 CST)
AtomLexer/lex.yy.c error
- John Stone (Fri Sep 26 2003 - 13:59:38 CDT)
- John Stone (Thu Sep 25 2003 - 16:35:22 CDT)
- Jeroen Akershoek (Wed Sep 17 2003 - 01:44:46 CDT)
- John Stone (Tue Sep 16 2003 - 12:06:33 CDT)
- Brian Bennion (Tue Sep 16 2003 - 10:37:28 CDT)
- Jeroen Akershoek (Tue Sep 16 2003 - 10:28:20 CDT)
- Brian Bennion (Tue Sep 16 2003 - 10:06:33 CDT)
- Jeroen Akershoek (Tue Sep 16 2003 - 05:38:11 CDT)
atoms deleted in patch try to come back
- Irene Newhouse (Sun Jul 15 2007 - 18:42:26 CDT)
- Irene Newhouse (Sun Jul 15 2007 - 18:37:46 CDT)
- Peter Freddolino (Sun Jul 15 2007 - 17:36:04 CDT)
- JC Gumbart (Sun Jul 15 2007 - 02:02:18 CDT)
- Irene Newhouse (Sun Jul 15 2007 - 01:01:48 CDT)
atoms filter?
- John Stone (Thu May 16 2002 - 10:09:07 CDT)
- Wuwei Liang (Thu May 16 2002 - 13:03:35 CDT)
Atoms numbers in VMD
- Leandro Martínez (Thu Sep 25 2008 - 14:56:01 CDT)
- Nd S (Thu Sep 25 2008 - 14:07:30 CDT)
atoms selection
- Jérôme Hénin (Mon Feb 21 2011 - 08:18:04 CST)
- Axel Kohlmeyer (Sun Feb 20 2011 - 12:18:56 CST)
- Iman Salehinia (Sat Feb 19 2011 - 16:33:27 CST)
atoms with changing colors
- Simone Melchionna (Thu Mar 20 2008 - 16:50:50 CDT)
- John Stone (Thu Mar 20 2008 - 17:03:47 CDT)
- Axel Kohlmeyer (Thu Mar 20 2008 - 17:05:53 CDT)
AtomSel and Graphics
- Justin Gullingsrud (Sat Feb 23 2002 - 16:53:21 CST)
- John Stone (Fri Feb 22 2002 - 16:07:07 CST)
- Fei Xu (Fri Feb 22 2002 - 11:26:51 CST)
AtomSel with object index (Python scripting)
- John Stone (Fri Feb 10 2006 - 13:26:44 CST)
- ziemys_at_ecr6.ohio-state.edu (Fri Feb 10 2006 - 13:04:07 CST)
atomsel: writepdb failed for vmd 1.8.6
- John Stone (Tue Jun 19 2007 - 17:21:01 CDT)
- Margaret S. Cheung (Tue Jun 19 2007 - 16:16:24 CDT)
atomselect
- Axel Kohlmeyer (Thu Apr 17 2008 - 11:07:27 CDT)
- Jian Zou (Thu Apr 17 2008 - 09:06:48 CDT)
- cong chen (Wed Apr 16 2008 - 19:58:18 CDT)
- Axel Kohlmeyer (Tue Jul 10 2007 - 08:49:38 CDT)
- Eduard Schreiner (Tue Jul 10 2007 - 09:23:23 CDT)
- Olaf Lenz (Tue Jul 10 2007 - 06:41:49 CDT)
- sally cii (Tue Jul 10 2007 - 06:05:51 CDT)
- Olaf Lenz (Tue Jul 10 2007 - 05:43:26 CDT)
- sally cii (Tue Jul 10 2007 - 05:41:42 CDT)
- Olaf Lenz (Tue Jul 10 2007 - 03:52:46 CDT)
- sally cii (Tue Jul 10 2007 - 03:03:23 CDT)
- Justin Gullingsrud (Tue Mar 18 2003 - 16:52:12 CST)
- Justin Gullingsrud (Tue Mar 18 2003 - 16:19:36 CST)
- B. Bennion (Tue Mar 18 2003 - 16:03:05 CST)
atomselect and macro
- Molybdos Kirkimpolakis (Mon Oct 17 2011 - 00:11:05 CDT)
- Axel Kohlmeyer (Sat Oct 15 2011 - 17:33:49 CDT)
- Molybdos Kirkimpolakis (Sat Oct 15 2011 - 15:34:59 CDT)
atomselect counting
- Bryan Roessler (Thu Feb 02 2012 - 13:20:38 CST)
- Peter C. Lai (Wed Jan 25 2012 - 16:51:49 CST)
- Axel Kohlmeyer (Wed Jan 25 2012 - 14:46:05 CST)
- jeela keel (Wed Jan 25 2012 - 13:48:18 CST)
- jeela keel (Wed Jan 25 2012 - 08:39:47 CST)
- Axel Kohlmeyer (Wed Jan 25 2012 - 09:12:16 CST)
Atomselect in loops
- Lubos Vrbka (Fri Nov 24 2006 - 07:46:14 CST)
- Alexandre A. Vakhrouchev (Fri Nov 24 2006 - 03:50:34 CST)
Atomselect in NAMD GUI
- Peter Freddolino (Thu Feb 12 2009 - 06:21:11 CST)
- bo baker (Wed Feb 11 2009 - 16:01:37 CST)
- John Stone (Mon Feb 09 2009 - 00:06:46 CST)
- bo baker (Sun Feb 08 2009 - 16:17:15 CST)
- bo baker (Thu Feb 05 2009 - 05:02:45 CST)
Atomselect on several molecules
- Veronika Brazdova (Mon Feb 05 2007 - 10:11:23 CST)
- Axel Kohlmeyer (Fri Feb 02 2007 - 13:36:13 CST)
- Veronika Brazdova (Fri Feb 02 2007 - 12:57:25 CST)
- Axel Kohlmeyer (Fri Feb 02 2007 - 11:19:06 CST)
- Veronika Brazdova (Fri Feb 02 2007 - 10:04:22 CST)
atomselect protein
- Adrian Kaats (Thu Mar 20 2008 - 16:39:54 CDT)
- John Stone (Thu Mar 20 2008 - 16:48:27 CDT)
atomselect within
- Wagener, M. (Markus) (Fri Feb 27 2004 - 04:39:48 CST)
- John Stone (Wed Feb 25 2004 - 13:28:37 CST)
- Wagener, M. (Markus) (Wed Feb 25 2004 - 08:23:37 CST)
atomselection
- Luis Rosales (Wed Jun 20 2007 - 10:14:56 CDT)
- Kevser Göçmen Topal (Wed Jun 20 2007 - 02:27:50 CDT)
Atomselection for negative values
- Chang, Christopher (Wed Jul 19 2006 - 17:46:15 CDT)
- John Stone (Wed Jul 19 2006 - 17:03:14 CDT)
- Chang, Christopher (Wed Jul 19 2006 - 16:18:39 CDT)
Atomselection in NAMDENERGY
- Axel Kohlmeyer (Fri Mar 02 2007 - 08:31:54 CST)
- Jawahar Neelankatan (Fri Mar 02 2007 - 08:09:27 CST)
atomselection in order
- Myunggi Yi (Thu Aug 30 2007 - 08:49:25 CDT)
- John Stone (Wed Aug 29 2007 - 00:11:02 CDT)
- Myunggi Yi (Tue Aug 28 2007 - 16:35:49 CDT)
- Leonardo Trabuco (Tue Aug 28 2007 - 10:12:10 CDT)
- Myunggi Yi (Tue Aug 28 2007 - 09:22:35 CDT)
- Myunggi Yi (Tue Aug 28 2007 - 08:29:03 CDT)
- John Stone (Mon Aug 27 2007 - 14:57:12 CDT)
- Thomas C. Bishop (Mon Aug 27 2007 - 09:34:15 CDT)
- Leonardo Trabuco (Thu Aug 23 2007 - 23:24:09 CDT)
- Myunggi Yi (Thu Aug 23 2007 - 22:19:35 CDT)
Atomselection problem
- John Stone (Fri Feb 24 2006 - 17:07:48 CST)
- Manali Joshi (Fri Feb 24 2006 - 16:54:12 CST)
atomselection question
- Peter Freddolino (Tue May 22 2007 - 19:29:53 CDT)
- Brian Kidd (Tue May 22 2007 - 18:55:55 CDT)
atomselection: number of residues
- Axel Kohlmeyer (Sun Feb 11 2007 - 13:41:08 CST)
- JC Gumbart (Sun Feb 11 2007 - 12:16:11 CST)
- Peter Freddolino (Sun Feb 11 2007 - 12:11:09 CST)
- Leonardo Trabuco (Sun Feb 11 2007 - 11:59:23 CST)
- namd vmd (Sun Feb 11 2007 - 06:35:17 CST)
attempting to source a script
- Tim Isgro (Thu Feb 12 2004 - 13:58:28 CST)
- Andrew Dalke (Thu Feb 12 2004 - 08:41:46 CST)
- John Stone (Wed Feb 11 2004 - 18:39:41 CST)
- Oliver Beckstein (Wed Feb 11 2004 - 18:05:24 CST)
- Tim Isgro (Wed Feb 11 2004 - 18:50:04 CST)
- Brian Bennion (Wed Feb 11 2004 - 16:49:41 CST)
- Kristy L. Mardis (Wed Feb 11 2004 - 15:51:17 CST)
Authentication error VMD-xplor
- Robert Dagil (Fri Mar 18 2011 - 07:46:07 CDT)
Auto Bead Display Size using topotools
- Axel Kohlmeyer (Mon Apr 02 2012 - 15:59:06 CDT)
- Phelan Jr, Frederick R. Dr. (Mon Apr 02 2012 - 14:50:47 CDT)
Auto IMD
- Jordi Cohen (Mon Jan 24 2005 - 14:27:49 CST)
- Luis Rosales (Mon Jan 24 2005 - 14:12:45 CST)
auto none /psfgen
- Jim Phillips (Thu Jun 30 2005 - 10:40:34 CDT)
- vivek sharma (Wed Jun 29 2005 - 07:31:23 CDT)
AutoHotkey script for managing VMD windows
- Ajasja LjubetiÄ (Fri Apr 09 2010 - 07:56:42 CDT)
AutoIMD
- John Stone (Fri Oct 15 2004 - 16:36:38 CDT)
- Luis Rosales (Wed Oct 06 2004 - 02:50:02 CDT)
AutoIMD and fixedatoms
- Jordi Cohen (Tue Feb 01 2005 - 12:32:38 CST)
- Luis Rosales (Mon Jan 31 2005 - 21:47:12 CST)
autoimd error
- Jordi Cohen (Wed Jun 15 2005 - 13:13:25 CDT)
- Anna Modzelewska (Wed Jun 15 2005 - 09:35:01 CDT)
AutoIMD on VMD 1.8.3
- John Stone (Thu Mar 03 2005 - 10:42:24 CST)
- Luis Rosales (Wed Mar 02 2005 - 20:24:46 CST)
AutoIMD on vmd 1.8.6 IRIX....
- John Stone (Mon May 14 2007 - 12:52:34 CDT)
- Luis Rosales (Fri May 11 2007 - 19:48:16 CDT)
autoimd on windows
- Anna Modzelewska (Wed Jun 22 2005 - 11:51:22 CDT)
- Anna Modzelewska (Wed Jun 22 2005 - 05:29:52 CDT)
- John Stone (Tue Jun 21 2005 - 15:43:11 CDT)
- Anna Modzelewska (Mon Jun 20 2005 - 06:40:29 CDT)
autoionize
- Jacopo Sgrignani (Wed Sep 07 2011 - 09:00:02 CDT)
- Lei Guo (Fri Dec 05 2003 - 17:36:26 CST)
autoionize "error procesing bonds"
- John Stone (Wed Mar 22 2006 - 16:58:16 CST)
- George M Giambasu (Mon Mar 20 2006 - 16:50:28 CST)
Autoionize / SODIUM
- Blake Charlebois (Mon Jan 24 2005 - 17:04:58 CST)
- John Stone (Fri Jan 21 2005 - 17:30:29 CST)
- Blake Charlebois (Sun Jan 16 2005 - 12:14:04 CST)
autoionize adds too many ions
- Goldsmith, Jacob (Wed Jul 20 2011 - 12:10:28 CDT)
- Leonardo Trabuco (Wed Jul 20 2011 - 10:30:02 CDT)
- JC Gumbart (Wed Jul 20 2011 - 10:20:35 CDT)
- Leonardo Trabuco (Wed Jul 20 2011 - 09:41:03 CDT)
- Edward Lyman (Fri Jul 15 2011 - 14:34:48 CDT)
autoionize behaviour on big systems
- John Stone (Mon Aug 28 2006 - 01:21:49 CDT)
- L. Michel Espinoza-Fonseca (Mon Aug 28 2006 - 01:12:18 CDT)
- John Stone (Mon Aug 28 2006 - 00:59:33 CDT)
- L. Michel Espinoza-Fonseca (Mon Aug 28 2006 - 00:44:24 CDT)
Autoionize does not neutralize the system
- Parisa Akhski (Wed Jul 07 2010 - 10:04:12 CDT)
- Axel Kohlmeyer (Tue Jul 06 2010 - 16:01:03 CDT)
- John Stone (Tue Jul 06 2010 - 15:39:48 CDT)
- Parisa Akhski (Tue Jul 06 2010 - 14:36:20 CDT)
- John Stone (Tue Jul 06 2010 - 10:42:58 CDT)
- John Stone (Tue Jul 06 2010 - 10:16:43 CDT)
- Axel Kohlmeyer (Tue Jul 06 2010 - 09:49:19 CDT)
- Parisa Akhski (Tue Jul 06 2010 - 09:16:20 CDT)
Autoionize plugin
- Rabab Toubar (Wed Nov 19 2008 - 10:07:33 CST)
- bo liu (Wed Nov 19 2008 - 08:42:58 CST)
- JC Gumbart (Wed Nov 19 2008 - 00:23:56 CST)
- Rabab Toubar (Tue Nov 18 2008 - 19:40:24 CST)
Autoionize plugin problem
- John Stone (Thu Dec 16 2004 - 11:30:21 CST)
- Gaurav Sharma (Tue Dec 14 2004 - 12:52:03 CST)
autoionize plugin..
- hl332_at_drexel.edu (Mon Jul 10 2006 - 11:38:16 CDT)
Autoionize question for DNA molecule
- Parisa Akhski (Fri Sep 17 2010 - 16:11:50 CDT)
- Peter Freddolino (Tue Sep 14 2010 - 18:55:35 CDT)
- Parisa Akhski (Tue Sep 14 2010 - 17:45:52 CDT)
- Eduard Schreiner (Mon Jul 12 2010 - 11:08:02 CDT)
- Parisa Akhski (Mon Jul 12 2010 - 10:10:11 CDT)
autoionize script
- amodzelewska_at_dns.iimcb.gov.pl (Sun May 16 2004 - 13:21:58 CDT)
automated loading
- Myunggi Yi (Mon Sep 21 2009 - 11:53:53 CDT)
- Axel Kohlmeyer (Mon Sep 21 2009 - 11:18:17 CDT)
- John Stone (Mon Sep 21 2009 - 11:17:21 CDT)
- Myunggi Yi (Mon Sep 21 2009 - 10:27:58 CDT)
- Myunggi Yi (Mon Sep 21 2009 - 11:01:19 CDT)
Automatic loading of mol2 files
- Peter Freddolino (Wed May 23 2007 - 10:52:12 CDT)
- FyD (Wed May 23 2007 - 10:42:17 CDT)
automatic PSF builder
- Axel Kohlmeyer (Mon Dec 13 2010 - 04:03:50 CST)
- leila karami (Mon Dec 13 2010 - 02:22:19 CST)
- Francesco Oteri (Sun Dec 12 2010 - 10:00:52 CST)
- leila karami (Sun Dec 12 2010 - 08:25:03 CST)
Automatic PSF Builder Help
- Peter Freddolino (Mon Aug 06 2007 - 15:59:17 CDT)
- Audrey Salazar (Mon Aug 06 2007 - 14:47:08 CDT)
- Audrey Salazar (Mon Aug 06 2007 - 14:27:52 CDT)
- Peter Freddolino (Mon Aug 06 2007 - 12:45:09 CDT)
- Axel Kohlmeyer (Mon Aug 06 2007 - 11:29:16 CDT)
- Peter Freddolino (Mon Aug 06 2007 - 11:46:46 CDT)
- Audrey Salazar (Mon Aug 06 2007 - 11:16:12 CDT)
Automatically shutting down VMD after NAMD terminates IMD connection
- Claw Isthelaw (Sun May 20 2007 - 16:20:30 CDT)
- John Stone (Sun May 20 2007 - 13:13:04 CDT)
- Claw Isthelaw (Sat May 19 2007 - 13:23:42 CDT)
Automatically zoom so that the protein fill the display
- Emmanuel Levy (Mon Mar 10 2008 - 15:03:40 CDT)
- John Stone (Mon Mar 10 2008 - 14:17:27 CDT)
- John Stone (Mon Mar 10 2008 - 14:36:02 CDT)
- Axel Kohlmeyer (Mon Mar 10 2008 - 13:50:50 CDT)
- Emmanuel Levy (Mon Mar 10 2008 - 14:28:30 CDT)
- Emmanuel Levy (Mon Mar 10 2008 - 14:30:51 CDT)
- Emmanuel Levy (Mon Mar 10 2008 - 13:21:46 CDT)
automating graphic representations
- Axel Kohlmeyer (Fri Aug 24 2007 - 13:08:44 CDT)
- Jim Pfaendtner (Fri Aug 24 2007 - 13:55:00 CDT)
- Axel Kohlmeyer (Wed Aug 22 2007 - 13:33:03 CDT)
- John Stone (Wed Aug 22 2007 - 13:44:19 CDT)
- Jim Pfaendtner (Wed Aug 22 2007 - 13:37:41 CDT)
autopfs: unknown atom type error when processing ATP
- Sasha Buzko (Sat May 02 2009 - 14:17:25 CDT)
- Peter Freddolino (Fri May 01 2009 - 22:31:52 CDT)
- Sasha Buzko (Fri May 01 2009 - 11:39:11 CDT)
- Peter Freddolino (Thu Apr 30 2009 - 16:52:18 CDT)
- Peter Freddolino (Thu Apr 30 2009 - 16:30:30 CDT)
- Sasha Buzko (Thu Apr 30 2009 - 16:38:51 CDT)
- Sasha Buzko (Thu Apr 30 2009 - 16:13:41 CDT)
AutoPSF
- Donovan B.T. (Fri Apr 20 2012 - 04:29:53 CDT)
- Peter Freddolino (Fri Jul 20 2007 - 13:59:56 CDT)
- snoze pa (Fri Jul 20 2007 - 12:42:18 CDT)
- lily jin (Thu Mar 15 2007 - 17:35:56 CDT)
- L. Michel Espinoza-Fonseca (Thu Mar 15 2007 - 17:13:38 CDT)
- Peter Freddolino (Thu Mar 15 2007 - 17:13:00 CDT)
- lily jin (Thu Mar 15 2007 - 17:02:37 CDT)
- L. Michel Espinoza-Fonseca (Thu Mar 15 2007 - 16:41:55 CDT)
- lily jin (Thu Mar 15 2007 - 16:33:48 CDT)
- L. Michel Espinoza-Fonseca (Thu Mar 15 2007 - 15:56:59 CDT)
- Peter Freddolino (Thu Mar 15 2007 - 15:29:05 CDT)
- lily jin (Thu Mar 15 2007 - 15:23:32 CDT)
AutoPSF deleting residues
- Peter Freddolino (Tue Jun 15 2010 - 20:33:02 CDT)
- Kelly Leung (Tue Jun 15 2010 - 10:35:38 CDT)
autopsf error: failed on end of segment
- Francesco Pietra (Tue Dec 21 2010 - 11:49:14 CST)
AutoPSF errors
- Peter Freddolino (Tue Jun 22 2010 - 20:16:06 CDT)
- Peter Freddolino (Mon Jun 21 2010 - 18:42:33 CDT)
- Emily Chen (Mon Jun 21 2010 - 14:06:19 CDT)
autopsf errors in vmd1.8.5
- Peter Freddolino (Mon Oct 30 2006 - 12:18:43 CST)
- Brian Bennion (Mon Oct 30 2006 - 12:09:54 CST)
autopsf from console
- Peter Freddolino (Thu Jul 17 2008 - 12:52:33 CDT)
- brosbam_at_berkeley.edu (Thu Jul 17 2008 - 12:23:21 CDT)
autopsf generator need at least one atom error
- John Stone (Sun Jan 24 2010 - 13:51:27 CST)
- Ronald Salesky (Sun Jan 24 2010 - 12:29:12 CST)
autopsf needs at least one atom error
- John Stone (Sun Jan 24 2010 - 14:18:22 CST)
- Ronald Salesky (Sun Jan 24 2010 - 14:09:57 CST)
- Peter Freddolino (Sun Jan 24 2010 - 13:55:07 CST)
- Ronald Salesky (Sun Jan 24 2010 - 12:43:51 CST)
autoPSF with a POPC membrane
- Peter Freddolino (Tue May 08 2007 - 18:19:12 CDT)
- Peter Freddolino (Mon May 07 2007 - 20:40:47 CDT)
- Stephen M. Dutz (Mon May 07 2007 - 19:37:25 CDT)
autopsf-patches C++ error 'expected integer but got "" ""'
- Peter Freddolino (Thu Feb 24 2011 - 21:28:18 CST)
- John Stone (Wed Feb 23 2011 - 16:54:55 CST)
- Francesco Pietra (Wed Feb 23 2011 - 15:03:16 CST)
- Francesco Pietra (Wed Feb 23 2011 - 10:42:55 CST)
- John Stone (Wed Feb 23 2011 - 10:34:09 CST)
- John Stone (Wed Feb 23 2011 - 10:47:31 CST)
- Francesco Pietra (Wed Feb 23 2011 - 10:21:11 CST)
autopsf: can't read "logfilename"
- John Stone (Thu Mar 29 2012 - 10:44:28 CDT)
- Francesco Pietra (Sat Mar 24 2012 - 11:46:15 CDT)
autostereograms in VMD?
- John Stone (Mon Jul 05 2004 - 13:52:38 CDT)
- Karsten Suhre (Fri Jul 02 2004 - 02:42:11 CDT)
Average angle between the lipid dipole vector and the bilayer normal.
- Andrés Morales (Wed Apr 11 2012 - 16:43:01 CDT)
- John Stone (Wed Apr 11 2012 - 14:06:52 CDT)
- Andrés Morales (Mon Apr 09 2012 - 12:55:17 CDT)
- Andrés Morales (Mon Apr 09 2012 - 12:45:44 CDT)
average area per lipid
- Stephen Dutz (Mon Mar 03 2008 - 16:06:44 CST)
- Stephen Dutz (Mon Mar 03 2008 - 11:14:11 CST)
Average coordinates
- Axel Kohlmeyer (Thu Jun 24 2004 - 23:48:36 CDT)
- Ahmet Bakan (Thu Jun 24 2004 - 13:51:12 CDT)
average pdb from dcd file
- sajad falsafi (Thu Oct 27 2011 - 11:40:38 CDT)
- Bjoern Olausson (Thu Oct 27 2011 - 09:54:06 CDT)
- hamze rahimi (Thu Oct 27 2011 - 07:39:53 CDT)
Average pocket size?
- Thomas Evangelidis (Wed Apr 18 2012 - 13:51:11 CDT)
- patrick wintrode (Wed Apr 18 2012 - 11:45:04 CDT)
Average position of atom set
- Leonardo Trabuco (Tue Nov 04 2008 - 20:11:01 CST)
- Christopher Hartshorn (Tue Nov 04 2008 - 09:59:56 CST)
average radius of cavity over many frames from hole
- maria goranovic (Wed Jul 06 2011 - 02:28:49 CDT)
Average strcuture
- Andres Morales N (Tue May 19 2009 - 10:21:28 CDT)
- jen hsin (Tue May 19 2009 - 09:08:41 CDT)
- Andres Morales N (Tue May 19 2009 - 08:51:23 CDT)
Average structure
- Peter Freddolino (Thu Mar 15 2007 - 14:39:21 CDT)
- Per Jr. Greisen (Thu Mar 15 2007 - 14:14:20 CDT)
- Eduard Schreiner (Tue Feb 13 2007 - 06:52:21 CST)
- dimka (Mon Feb 12 2007 - 13:42:33 CST)
Average structure and NamdEnergy
- John Stone (Thu Sep 17 2009 - 11:35:58 CDT)
- Andres Morales N (Thu Sep 17 2009 - 00:03:36 CDT)
- Andres Morales N (Wed Sep 16 2009 - 14:27:23 CDT)
Average Structure and RMSD
- John Stone (Wed Jun 21 2006 - 13:29:44 CDT)
- griadi_at_utalca.cl (Wed Jun 21 2006 - 11:28:33 CDT)
average structure script
- Toni Giorgino (Fri Nov 25 2011 - 11:21:28 CST)
- Ajasja LjubetiÄ (Fri Nov 25 2011 - 11:09:59 CST)
- flavio seixas (Fri Nov 25 2011 - 09:52:40 CST)
average structure/solute and solvent
- Alex Liu (Wed Nov 24 2010 - 10:19:28 CST)
- Alex Liu (Tue Nov 23 2010 - 09:21:31 CST)
average z-coordinate of a selection
- Nitin Bhardwaj (Tue Dec 19 2006 - 11:08:42 CST)
- Nitin Bhardwaj (Tue Dec 19 2006 - 10:54:29 CST)
Averaging volmaps
- Cesar Luis Avila (Thu Sep 06 2007 - 10:11:36 CDT)
Avoid vmd closing with script
- Guenegou, Guillaume [ORDFR] (Tue Jul 26 2011 - 01:54:44 CDT)
- Axel Kohlmeyer (Mon Jul 25 2011 - 09:31:45 CDT)
- Guenegou, Guillaume [ORDFR] (Mon Jul 25 2011 - 08:31:01 CDT)
avoiding distance based bond search when reading a PDB file
- John Stone (Thu Nov 14 2002 - 15:25:53 CST)
- Christophe Guilbert (Thu Nov 14 2002 - 14:31:17 CST)
AW: PhD position in Computational Structural Biology at MPI Muenster
- Prskalo, Alen-Pilip (Fri May 13 2011 - 06:26:56 CDT)
AW: VMD 3D movies rendering
- Daniel Hornburg (Thu Aug 19 2010 - 03:23:43 CDT)
- Daniel Hornburg (Wed Aug 18 2010 - 02:17:49 CDT)
- Daniel Hornburg (Tue Aug 17 2010 - 10:50:30 CDT)
- Daniel Hornburg (Tue Aug 17 2010 - 05:43:35 CDT)
AW: volumetric maps
- markus.mooslechner_at_orf.at (Fri Oct 03 2008 - 05:11:50 CDT)
Away from email until Sunday...
- John Stone (Wed Sep 15 2004 - 17:48:55 CDT)
Away from VMD-L/email until July 8th...
- daniel aguayo (Fri Jun 20 2008 - 16:27:34 CDT)
- Alexandre A. Vakhrouchev (Thu Jun 19 2008 - 21:09:17 CDT)
- John Stone (Thu Jun 19 2008 - 19:50:06 CDT)
Away until July 12, self-help encouraged!
- John Stone (Thu Jun 28 2007 - 17:22:36 CDT)
Axes
- Andres Morales N (Wed May 13 2009 - 08:42:45 CDT)
- John Stone (Tue Aug 19 2008 - 00:54:31 CDT)
- Nazanin Samadi (Wed Aug 13 2008 - 14:21:06 CDT)
Axes are not rotated?
- Olaf Lenz (Thu Jul 22 2004 - 10:50:06 CDT)
- John Stone (Mon Jul 19 2004 - 10:22:44 CDT)
- Olaf Lenz (Mon Jul 19 2004 - 10:12:29 CDT)
Axes dilema
- John Stone (Fri Aug 11 2006 - 22:27:58 CDT)
- griadi_at_utalca.cl (Fri Aug 11 2006 - 18:11:07 CDT)
B factor calculation
- Aaron.Oakley_at_csiro.au (Tue Nov 04 2008 - 16:27:02 CST)
- AyÅŸe Ã–zlem Aykut (Tue Nov 04 2008 - 10:51:24 CST)
B-factor Plot
- Paul Hubbard (Mon Feb 28 2000 - 17:06:33 CST)
Babel and VMD
- Neil Henson T-12 (Tue Mar 03 1998 - 12:12:27 CST)
- aldo jongejan (Tue Mar 03 1998 - 11:05:07 CST)
Babel and Windows
- Storr, Mark (Tue May 21 2002 - 08:22:37 CDT)
babel compilation error
- John Stone (Fri Dec 09 2005 - 12:59:39 CST)
- Eugen Leitl (Fri Dec 09 2005 - 11:30:24 CST)
- John Stone (Fri Dec 09 2005 - 10:10:20 CST)
- Bogdan Costescu (Fri Dec 09 2005 - 10:04:22 CST)
- John Stone (Thu Dec 08 2005 - 14:30:13 CST)
- Cojocaru,Vlad (Thu Dec 08 2005 - 14:26:38 CST)
backbone dihedral angles over trajectory
- Giovanni Bellesia (Fri Aug 08 2008 - 17:36:44 CDT)
- Roman Petrenko (Fri Aug 08 2008 - 17:05:59 CDT)
Backbone representation of RNA
- John Stone (Fri Aug 12 2005 - 10:55:56 CDT)
- Peter Schellenberg (Fri Aug 12 2005 - 01:40:44 CDT)
Background colour
- Jérôme Hénin (Sun Nov 30 2003 - 03:39:16 CST)
- Derek Ng (Sat Nov 29 2003 - 23:38:26 CST)
Background gradient in image
- Axel Kohlmeyer (Mon Nov 15 2010 - 16:48:25 CST)
- quantrum75 (Mon Nov 15 2010 - 15:45:43 CST)
Backspace and delete
- John Stone (Thu Mar 06 2003 - 18:46:50 CST)
Backspace not functionning in console
- John Stone (Thu Sep 11 2003 - 10:04:29 CDT)
- John Stone (Wed Sep 10 2003 - 10:07:34 CDT)
- Patrick Ladam (Wed Sep 10 2003 - 07:07:05 CDT)
bad angels
- genie lfs (Mon Apr 24 2006 - 05:06:32 CDT)
bad angels]
- Peter Freddolino (Mon Apr 24 2006 - 10:15:42 CDT)
Bad Length and GLXBadLargeRequest errors
- Axel Kohlmeyer (Thu Dec 23 2010 - 04:01:03 CST)
- Corenflos, Steven (Wed Dec 22 2010 - 15:57:58 CST)
Bad performance of VMD
- John Stone (Fri Dec 02 2005 - 13:03:20 CST)
- Jernej Zidar (Wed Nov 30 2005 - 04:41:24 CST)
- John Stone (Mon Nov 28 2005 - 11:16:13 CST)
- Jernej Zidar (Wed Nov 23 2005 - 09:40:53 CST)
bad resolution and too slow on mandrake 10.0
- matteo.pennestri_at_virgilio.it (Sun May 29 2005 - 12:37:42 CDT)
- John Stone (Fri May 27 2005 - 15:00:06 CDT)
- Jorge Hernandez Fernandez (Fri May 27 2005 - 14:50:09 CDT)
- Olga Kravchenko (Wed May 25 2005 - 05:00:28 CDT)
- Cetin Baloglu (Wed May 25 2005 - 04:04:55 CDT)
- matteo.pennestri_at_virgilio.it (Wed May 25 2005 - 02:00:01 CDT)
bad text display in tk console (ubuntu 8.04 VMD 1.8.7 linux 32 bit)
- John Stone (Wed Jan 20 2010 - 14:12:07 CST)
- Dong Luo (Wed Jan 20 2010 - 14:01:45 CST)
- Dong Luo (Wed Jan 20 2010 - 13:48:09 CST)
- John Stone (Wed Jan 20 2010 - 12:37:38 CST)
- John Stone (Wed Jan 20 2010 - 12:24:16 CST)
- Axel Kohlmeyer (Wed Jan 20 2010 - 11:42:57 CST)
- Dong Luo (Wed Jan 20 2010 - 11:12:11 CST)
- Dong Luo (Wed Jan 20 2010 - 10:17:57 CST)
- John Stone (Wed Jan 20 2010 - 10:24:45 CST)
- Axel Kohlmeyer (Fri Jan 15 2010 - 12:11:21 CST)
- John Stone (Fri Jan 15 2010 - 12:01:17 CST)
- Dong Luo (Fri Jan 15 2010 - 11:30:48 CST)
bad window parameter
- Axel Kohlmeyer (Tue May 10 2011 - 10:39:44 CDT)
- Robert Wohlhueter (Tue May 10 2011 - 09:27:34 CDT)
bad window parameter -- SOLVED
- Robert Wohlhueter (Tue May 10 2011 - 10:16:48 CDT)
bad_alloc error
- Gustavo Gust (Wed Nov 11 2009 - 10:17:37 CST)
- Axel Kohlmeyer (Wed Nov 11 2009 - 10:43:34 CST)
- John Stone (Wed Nov 11 2009 - 10:12:12 CST)
- Gustavo Gust (Wed Nov 11 2009 - 09:58:01 CST)
- John Stone (Wed Nov 11 2009 - 09:20:20 CST)
- Gustavo Gust (Wed Nov 11 2009 - 09:04:34 CST)
badwater script - help
- John Stone (Thu Jul 26 2007 - 16:28:08 CDT)
- Jim Pfaendtner (Thu Jul 26 2007 - 15:18:48 CDT)
base plane not being filled in for terminal adenines in ribbons/new ribbons
- John Stone (Tue Jun 15 2004 - 14:38:30 CDT)
- Pattanayek, Sabuj (Mon Jun 14 2004 - 13:30:18 CDT)
bash scripts quits after few frames
- Jérôme Hénin (Tue Nov 22 2011 - 06:32:43 CST)
- Axel Kohlmeyer (Tue Nov 22 2011 - 06:20:24 CST)
- Jorgen Simonsen (Tue Nov 22 2011 - 03:55:02 CST)
Basic membrane plugin questions
- John Stone (Tue Apr 19 2005 - 18:42:53 CDT)
- Meyer, Douglas K $UMC-Student$ (Fri Apr 15 2005 - 11:20:56 CDT)
Basic VMD questions...
- Justin Gullingsrud (Sun Oct 10 2004 - 10:19:17 CDT)
- lug2002_at_med.cornell.edu (Sat Oct 09 2004 - 00:51:07 CDT)
- Justin Gullingsrud (Thu Oct 07 2004 - 22:02:22 CDT)
- Axel Kohlmeyer (Sun Oct 10 2004 - 03:20:16 CDT)
- Oleg V. Stroganov (Sat Oct 09 2004 - 12:21:35 CDT)
- Luis Rosales (Fri Oct 08 2004 - 21:05:30 CDT)
- Axel Kohlmeyer (Fri Oct 08 2004 - 02:17:34 CDT)
- Luis Rosales (Thu Oct 07 2004 - 19:10:52 CDT)
Batch image creation
- Axel Kohlmeyer (Fri Nov 04 2011 - 18:07:41 CDT)
- Juan Antonio Raygoza Garay (Fri Nov 04 2011 - 16:59:57 CDT)
Batch mode on Mac OS 10.5.3
- Benjamin Hall (Wed Jun 04 2008 - 08:26:23 CDT)
- Robert Brunner (Tue Jun 03 2008 - 12:34:02 CDT)
- Dan Wright (Tue Jun 03 2008 - 11:24:22 CDT)
- John Stone (Tue Jun 03 2008 - 11:10:18 CDT)
- Benjamin Hall (Tue Jun 03 2008 - 05:16:52 CDT)
batchmode use of "labels" functions?
- John Stone (Fri Feb 10 2006 - 12:50:40 CST)
- Brian Bennion (Fri Feb 10 2006 - 11:59:32 CST)
BB Trace
- Rex Palmer (Thu Aug 26 2010 - 14:49:39 CDT)
Be someone whom you have never been before with DrMaxMan
- ltrabuco_at_ks.uiuc.edu (Mon Jul 13 2009 - 10:30:41 CDT)
Be the largest man around
- petefred_at_ks.uiuc.edu (Thu Jul 02 2009 - 13:35:37 CDT)
Beginner with cyclic peptide
- Peter Freddolino (Tue Apr 29 2008 - 11:44:04 CDT)
- Gao, Fan, Ph.D. (Tue Apr 29 2008 - 11:25:34 CDT)
Beginner's problem
- Alexandr Isayev (Tue Nov 14 2006 - 12:01:36 CST)
- John Young (Tue Nov 14 2006 - 11:20:01 CST)
behavior of "mol addfile first/last" with non-integer frame numbers
- John Stone (Fri Sep 28 2007 - 13:37:49 CDT)
- Axel Kohlmeyer (Thu Sep 27 2007 - 19:35:40 CDT)
best fit lines through two selections per each molecule ( I have 80 molecules) and the angle with another vector for each molecule
- Axel Kohlmeyer (Tue Jun 28 2011 - 09:55:40 CDT)
- Sara Biocomputation (Mon Jun 27 2011 - 10:44:48 CDT)
- Sara Biocomputation (Mon Jun 27 2011 - 10:39:30 CDT)
Best fit plane axis
- Jayendra Balasubramanian (Fri Dec 08 2006 - 14:52:31 CST)
- Amarda Shehu (Fri Dec 08 2006 - 14:21:19 CST)
- Myunggi Yi (Fri Dec 08 2006 - 12:23:58 CST)
Best hardware for 3d.
- John Stone (Fri Mar 15 2002 - 10:06:09 CST)
Best way for model post processing?
- Axel Kohlmeyer (Mon Oct 18 2010 - 12:11:55 CDT)
- Steve Jensen (Sun Oct 17 2010 - 23:22:14 CDT)
Best way to bond peptides
- Sujata Sovani (Wed Sep 01 2010 - 18:30:08 CDT)
Best way to join two PDB fragments by a peptide bond
- Sujata Sovani (Wed Sep 01 2010 - 17:36:46 CDT)
Beta color of atoms
- John Stone (Fri Nov 08 2002 - 11:38:47 CST)
- #WONG CHEE HOW# (Thu Nov 07 2002 - 19:57:26 CST)
beta column format in PDB
- Axel Kohlmeyer (Wed Dec 24 2008 - 15:53:27 CST)
- BIN ZHANG (Wed Dec 24 2008 - 14:57:47 CST)
- Axel Kohlmeyer (Wed Dec 24 2008 - 14:33:53 CST)
- BIN ZHANG (Wed Dec 24 2008 - 13:41:23 CST)
beta version
- Sanjeev B.S. (Tue Nov 26 2002 - 01:35:28 CST)
Big trr trajectory
- John Stone (Thu Mar 23 2006 - 10:28:14 CST)
- Anthony Cruz (Thu Mar 23 2006 - 13:27:17 CST)
bigdcd
- Ioana Cozmuta (Wed Nov 05 2003 - 18:29:25 CST)
- Brian Bennion (Wed Nov 05 2003 - 17:52:38 CST)
- Ioana Cozmuta (Wed Nov 05 2003 - 17:00:40 CST)
- Ioana Cozmuta (Tue Nov 04 2003 - 19:52:51 CST)
bigdcd + salt-bridge analysis
- John Stone (Sun Sep 19 2010 - 19:39:16 CDT)
- Murpholino Peligro (Thu Sep 16 2010 - 15:31:58 CDT)
Bigdcd - get coordinates from file
- Peter Freddolino (Sun Nov 05 2006 - 07:47:42 CST)
- Per Jr. Greisen (Sun Nov 05 2006 - 05:56:34 CST)
Bigdcd and Namdenergy batch problem
- John Stone (Thu Feb 25 2010 - 16:46:08 CST)
- Andrea Carotti (Wed Feb 24 2010 - 10:21:34 CST)
bigdcd v2.0 testers needed...
- Axel Kohlmeyer (Wed May 07 2008 - 15:21:47 CDT)
bigdcd v3 available. testers needed.
- Axel Kohlmeyer (Wed Jun 24 2009 - 09:07:14 CDT)
bilayer thickness in simulation of POPC membranes
- Olaf Lenz (Sun Aug 12 2007 - 04:00:41 CDT)
- Cojocaru,Vlad (Sun Aug 12 2007 - 02:54:44 CDT)
- Axel Kohlmeyer (Sat Aug 11 2007 - 11:33:51 CDT)
- Cojocaru,Vlad (Sat Aug 11 2007 - 10:08:28 CDT)
- Vlad Cojocaru (Fri Aug 10 2007 - 10:56:41 CDT)
Binary request
- Axel Kohlmeyer (Fri Jan 07 2011 - 08:15:18 CST)
- Axel Kohlmeyer (Fri Jan 07 2011 - 09:01:48 CST)
- Nima Nouri (Fri Jan 07 2011 - 04:19:13 CST)
Binary VMD buid for Linux, text mode only
- John Stone (Wed Mar 03 2010 - 17:09:42 CST)
- Benjamin Bouvier (Wed Mar 03 2010 - 09:26:20 CST)
Binding site similarity
- Ban Arn (Mon Dec 05 2011 - 09:51:55 CST)
binning data for each frame and coordinate
- Axel Kohlmeyer (Wed Oct 12 2005 - 13:34:37 CDT)
- syma (Wed Oct 12 2005 - 04:35:45 CDT)
Bio-Image summer school in Paris this year
- Marc Baaden (Wed Mar 16 2005 - 05:45:47 CST)
BioCoRE Release: New Features
- Robert Brunner (Mon Dec 16 2002 - 17:04:02 CST)
Biometric Case Study Presentations Available (no charge), data mining and predictive modeling
- Lisa Solomon (Mon Jul 10 2006 - 12:22:37 CDT)
Biomolecular Simulations Meeting Bordeaux, 2&3 Sept. 2005
- Biomolecular Simulations Congress 2005 (Tue Mar 22 2005 - 08:19:24 CST)
Black & white VMD in CAVE?
- John Stone (Thu Mar 18 2004 - 11:02:10 CST)
- Jeroen Akershoek (Thu Mar 18 2004 - 00:28:34 CST)
blank output
- John Stone (Mon Nov 07 2011 - 12:43:57 CST)
- sarah k (Sun Nov 06 2011 - 09:34:39 CST)
Blank thumbnails and non-working snapshots
- Christopher McLean (Thu Feb 11 2010 - 03:18:29 CST)
- John Stone (Tue Feb 09 2010 - 10:07:31 CST)
- John Stone (Tue Feb 09 2010 - 09:44:00 CST)
- John Stone (Tue Feb 09 2010 - 09:29:32 CST)
- Christopher McLean (Tue Feb 09 2010 - 09:04:06 CST)
- Axel Kohlmeyer (Tue Feb 09 2010 - 08:24:14 CST)
- John Stone (Tue Feb 09 2010 - 08:12:37 CST)
- Christopher McLean (Tue Feb 09 2010 - 03:47:41 CST)
- Axel Kohlmeyer (Mon Feb 08 2010 - 11:47:35 CST)
- Christopher McLean (Mon Feb 08 2010 - 09:55:13 CST)
BMP snapshot
- John Stone (Thu May 07 2009 - 14:24:57 CDT)
- Eric H. Lee (Thu May 07 2009 - 14:26:24 CDT)
- Tawhid Ezaz (Thu May 07 2009 - 14:04:58 CDT)
Bond between two hydrogen atoms
- Axel Kohlmeyer (Tue Jun 28 2011 - 12:56:11 CDT)
- Debasis Sengupta (Tue Jun 28 2011 - 12:23:05 CDT)
Bond Colors
- Axel Kohlmeyer (Thu Oct 14 2010 - 11:58:09 CDT)
- John Stone (Thu Oct 14 2010 - 11:54:04 CDT)
- Brooke Dallas (Thu Oct 14 2010 - 11:37:10 CDT)
- Patrick Burney (Wed Oct 13 2010 - 14:41:43 CDT)
- Axel Kohlmeyer (Wed Oct 13 2010 - 12:38:18 CDT)
- Eduard Schreiner (Wed Oct 13 2010 - 12:14:46 CDT)
- Brooke Dallas (Wed Oct 13 2010 - 11:31:16 CDT)
- Axel Kohlmeyer (Wed Oct 13 2010 - 09:41:00 CDT)
- Brooke Dallas (Wed Oct 13 2010 - 08:46:36 CDT)
bond connectivity for different frames
- John Stone (Tue Mar 11 2003 - 10:26:52 CST)
- Lars Bruno Hansen (Tue Mar 11 2003 - 10:16:38 CST)
bond connectivity not displayed in VMD
- Axel Kohlmeyer (Wed Oct 21 2009 - 12:58:15 CDT)
- Elias Ahadi (Wed Oct 21 2009 - 11:36:39 CDT)
BOND CP2 - CT2 IN PARAMETER FILES
- bora erdemli (Thu Oct 28 2004 - 16:42:09 CDT)
bond cutoff
- John Stone (Wed Mar 21 2012 - 11:29:49 CDT)
- Zhuyi Xue (Mon Mar 19 2012 - 08:45:34 CDT)
Bond display and Periodic Boxes
- John Stone (Mon Apr 26 2004 - 17:51:03 CDT)
- Jim Shepherd (Mon Apr 26 2004 - 14:19:02 CDT)
bond distance across different proteins
- Stern, Julie (Tue Dec 07 2004 - 14:56:59 CST)
Bond drawing questino
- John Stone (Fri Oct 24 2003 - 18:51:59 CDT)
- Paul Fons (Tue Oct 21 2003 - 01:52:22 CDT)
Bond in pbc condition
- John Stone (Fri Aug 28 2009 - 10:22:06 CDT)
- Olaf Lenz (Fri Aug 28 2009 - 04:06:39 CDT)
- Yew Yong Kin (Wed Aug 26 2009 - 01:46:27 CDT)
Bond information
- Justin Gullingsrud (Fri Aug 04 2000 - 12:11:21 CDT)
- Timm Essigke (Fri Aug 04 2000 - 11:09:44 CDT)
bond information in psf file
- Axel Kohlmeyer (Sat Jun 24 2006 - 22:51:13 CDT)
- Xu (Sat Jun 24 2006 - 20:51:27 CDT)
bond length
- Justin Gullingsrud (Mon Jan 28 2002 - 11:32:36 CST)
- Vlad Cojocaru (Mon Jan 28 2002 - 05:26:27 CST)
bond length definition
- John Stone (Wed Apr 25 2001 - 13:39:35 CDT)
- Aitor Gonzalez (Wed Apr 25 2001 - 04:41:32 CDT)
- Mauricio Carrillo Tripp (Tue Apr 24 2001 - 13:40:17 CDT)
Bond Lengths
- John Stone (Fri Jun 20 2003 - 09:55:54 CDT)
- Timothy W Suen (Fri Jun 20 2003 - 08:54:25 CDT)
Bond lengths from PDB and PSF
- Axel Kohlmeyer (Mon May 12 2008 - 17:32:55 CDT)
- Andrew Huang (Mon May 12 2008 - 16:36:18 CDT)
bond missimg
- Eduard Schreiner (Mon Apr 25 2005 - 08:58:44 CDT)
- Axel Kohlmeyer (Mon Apr 25 2005 - 08:47:20 CDT)
- haider abbas (Mon Apr 25 2005 - 05:25:19 CDT)
Bond representation of coarse grained molecules
- Sunjoo Lee (Wed Oct 07 2009 - 12:17:12 CDT)
- Axel Kohlmeyer (Wed Oct 07 2009 - 09:39:42 CDT)
- Baofu Qiao (Wed Oct 07 2009 - 02:21:14 CDT)
- Axel Kohlmeyer (Sat Sep 05 2009 - 14:45:59 CDT)
- John Stone (Fri Sep 04 2009 - 09:49:26 CDT)
- BAN,YOUNG MIN (Wed Sep 02 2009 - 16:52:23 CDT)
bonding across periodic boundary
- Jim Phillips (Tue Apr 12 2005 - 13:02:10 CDT)
- Glenn Johnson (Tue Apr 12 2005 - 12:14:53 CDT)
Bondlength information!
- John Stone (Wed Aug 06 2003 - 11:04:57 CDT)
- Ramesh K. Sistla (Wed Aug 06 2003 - 02:54:34 CDT)
bonds across periodic boundaries
- John Stone (Tue Oct 16 2007 - 09:22:46 CDT)
- Barry Bickmore (Tue Oct 16 2007 - 08:53:09 CDT)
bonds forming during simulation
- John Stone (Mon Jun 26 2006 - 14:48:11 CDT)
- Sandeep Prakash (Mon Jun 26 2006 - 12:59:50 CDT)
bonds in .psf file
- Axel Kohlmeyer (Thu May 21 2009 - 12:48:40 CDT)
- KIRTANA S (Thu May 21 2009 - 12:32:35 CDT)
bonds in graphical representation
- John Stone (Tue Jul 23 2002 - 22:10:19 CDT)
- Marcela Madrid (Sat Jul 20 2002 - 15:20:08 CDT)
bonds not created as desired
- Akemi Matsuno-Yagi (Tue Jun 09 2009 - 15:09:25 CDT)
- John Stone (Tue Jun 09 2009 - 14:55:44 CDT)
- Akemi Matsuno-Yagi (Tue Jun 09 2009 - 13:01:09 CDT)
bondsrecalc question
- Axel Kohlmeyer (Fri Mar 30 2012 - 12:46:52 CDT)
- Denis Davydov (Fri Mar 30 2012 - 11:10:14 CDT)
Boolean operators and the new atomsel type
- Axel Kohlmeyer (Wed Feb 10 2010 - 14:35:37 CST)
- Daniel Terry (Wed Feb 10 2010 - 12:30:21 CST)
boolean operators in graphics
- John Stone (Thu Mar 14 2002 - 22:39:09 CST)
- Andrew Dalke (Thu Mar 14 2002 - 22:32:38 CST)
- Sanjeev B.S. (Thu Mar 14 2002 - 22:11:11 CST)
boubt about consistency of measures
- John Stone (Mon Mar 27 2006 - 21:37:55 CST)
- John Stone (Mon Mar 27 2006 - 00:47:16 CST)
- Sergio Anis (Thu Mar 23 2006 - 08:19:52 CST)
Boundry Dimensions for Solvation
- Axel Kohlmeyer (Thu Jul 26 2007 - 11:41:04 CDT)
- Vijaya Brahma (Thu Jul 26 2007 - 04:25:03 CDT)
- Vijaya Brahma (Wed Jul 25 2007 - 23:56:13 CDT)
Box dimensions
- John Stone (Wed Jun 20 2007 - 10:55:34 CDT)
- Jennie Thomas (Tue Jun 19 2007 - 18:28:12 CDT)
- John Stone (Tue Jun 19 2007 - 18:03:34 CDT)
- Jennie Thomas (Tue Jun 19 2007 - 17:59:53 CDT)
box information
- John Stone (Tue Apr 04 2006 - 17:27:17 CDT)
- dimka (Tue Apr 04 2006 - 17:18:30 CDT)
box information amber crdbox
- Myunggi Yi (Fri Jan 05 2007 - 10:44:42 CST)
- John Stone (Wed Jan 03 2007 - 10:23:46 CST)
- Myunggi Yi (Fri Dec 22 2006 - 17:24:19 CST)
Box of non-polar solvent
- Brian Bennion (Fri Jul 16 2004 - 13:35:28 CDT)
- Brian Bennion (Fri Jul 16 2004 - 13:13:01 CDT)
- Axel Kohlmeyer (Fri Jul 16 2004 - 11:59:45 CDT)
- John Stone (Fri Jul 16 2004 - 10:36:28 CDT)
- Raymond C. Fort Jr. (Fri Jul 16 2004 - 09:17:23 CDT)
box vectores in .trr
- Matt Watkins (Sat Apr 09 2011 - 17:47:06 CDT)
- Axel Kohlmeyer (Sat Apr 09 2011 - 15:17:23 CDT)
- leila karami (Sat Apr 09 2011 - 08:44:04 CDT)
BPS Meeting @ Baltimore
- L. Michel Espinoza-Fonseca (Thu Mar 08 2007 - 09:40:16 CST)
- Peter Freddolino (Thu Mar 08 2007 - 07:07:25 CST)
- bora erdemli (Mon Mar 05 2007 - 19:16:40 CST)
breaking a big dcd file
- John Stone (Wed Jan 11 2006 - 16:23:26 CST)
- Kim Gunnerson (Wed Jan 11 2006 - 13:41:49 CST)
- Axel Kohlmeyer (Tue Dec 20 2005 - 18:58:28 CST)
- Nitin Bhardwaj (Tue Dec 20 2005 - 16:48:08 CST)
- John Stone (Tue Dec 20 2005 - 16:28:31 CST)
- Nitin Bhardwaj (Tue Dec 20 2005 - 16:09:40 CST)
Breaking a trajectory into separate files with tcl
- Patrick Redmill (Mon Oct 05 2009 - 05:41:39 CDT)
- Axel Kohlmeyer (Mon Oct 05 2009 - 01:41:49 CDT)
- Schreiner Eduard (Sun Oct 04 2009 - 22:06:21 CDT)
- Patrick Redmill (Sun Oct 04 2009 - 21:48:27 CDT)
Breaking Bonds in VMD
- John Stone (Mon Jan 26 2009 - 15:55:29 CST)
- Axel Kohlmeyer (Tue Jan 20 2009 - 17:21:16 CST)
- John Stone (Tue Jan 20 2009 - 17:26:01 CST)
- nicholas lee (Tue Jan 20 2009 - 15:01:16 CST)
- nicholas lee (Tue Jan 20 2009 - 10:40:46 CST)
- John Stone (Tue Jan 20 2009 - 10:47:17 CST)
breaking the DCD file
- Peter Freddolino (Sun Apr 16 2006 - 17:23:42 CDT)
- John Stone (Sun Apr 16 2006 - 17:12:32 CDT)
- Rima Chaudhuri (Sun Apr 16 2006 - 16:01:52 CDT)
breaking the last bond when loading
- John Stone (Tue Nov 26 2002 - 11:06:20 CST)
- John Stone (Tue Nov 26 2002 - 09:34:35 CST)
- Vlad Cojocaru (Tue Nov 26 2002 - 07:24:59 CST)
bridging_waters.tcl error and usage
- Justin Gullingsrud (Mon Nov 08 2004 - 13:04:00 CST)
- Justin Gullingsrud (Mon Nov 08 2004 - 12:51:05 CST)
- pl (Mon Nov 08 2004 - 05:18:21 CST)
bring z-axis along a new vector
- Ajasja LjubetiÄ (Wed Feb 16 2011 - 03:00:01 CST)
- dhacademic (Tue Feb 15 2011 - 14:39:04 CST)
Broken bonds in trajectory due to pbc
- Jennifer Williams (Wed Dec 09 2009 - 06:39:48 CST)
- Olaf Lenz (Wed Dec 09 2009 - 04:14:34 CST)
- Olaf Lenz (Wed Dec 09 2009 - 04:04:29 CST)
- Axel Kohlmeyer (Tue Dec 08 2009 - 16:32:01 CST)
- Olaf Lenz (Tue Dec 08 2009 - 13:07:39 CST)
- Olaf Lenz (Tue Dec 08 2009 - 07:39:39 CST)
- Jennifer Williams (Tue Dec 08 2009 - 05:41:07 CST)
Broken tube drawing method?
- Axel Kohlmeyer (Thu Jul 05 2007 - 09:24:39 CDT)
- Claw Isthelaw (Thu Jul 05 2007 - 00:17:37 CDT)
Bug in 'source' command or in for loop?
- John Stone (Fri Sep 16 2011 - 14:03:38 CDT)
- dwds gerge (Tue Sep 13 2011 - 19:37:08 CDT)
- John Stone (Tue Sep 13 2011 - 13:52:43 CDT)
- dwds gerge (Tue Sep 13 2011 - 12:06:10 CDT)
Bug in AutoIMD
- John Stone (Thu Dec 09 2010 - 16:42:53 CST)
- Tristan Croll (Sun Dec 05 2010 - 21:44:48 CST)
- Tristan Croll (Sun Dec 05 2010 - 19:42:50 CST)
bug in comments interpretation of vmd
- John Stone (Wed Nov 26 2008 - 11:13:49 CST)
bug in Hbond Option
- Axel Kohlmeyer (Mon Sep 19 2011 - 06:51:38 CDT)
- hamid mosaddeghi (Mon Sep 19 2011 - 00:37:41 CDT)
bug in membrane plugin
- JC Gumbart (Wed May 17 2006 - 14:21:55 CDT)
- Peter Freddolino (Wed May 17 2006 - 14:14:56 CDT)
- John Stone (Wed May 17 2006 - 13:59:01 CDT)
- Ting Wang (Wed May 17 2006 - 13:52:21 CDT)
- Axel Kohlmeyer (Mon May 15 2006 - 13:44:00 CDT)
- John Stone (Mon May 15 2006 - 12:33:29 CDT)
- Ting Wang (Thu May 11 2006 - 13:47:11 CDT)
Bug in molefacture proline residue of official version (1.8.6 LINUXAMD64)
- Alexandre Suman de Araujo (Mon Feb 02 2009 - 12:51:46 CST)
bug in the g(r) evaluation?
- cipitaua_at_gmail.com (Wed Apr 23 2008 - 07:50:12 CDT)
- Axel Kohlmeyer (Tue Apr 22 2008 - 14:32:07 CDT)
- cipitaua_at_gmail.com (Tue Apr 22 2008 - 11:06:14 CDT)
- Axel Kohlmeyer (Tue Apr 22 2008 - 10:10:35 CDT)
- cipitaua_at_gmail.com (Tue Apr 22 2008 - 09:30:37 CDT)
Bug in the tcl script
- John Stone (Thu Feb 15 2007 - 22:44:32 CST)
- greddy1_at_umd.edu (Tue Feb 13 2007 - 13:18:58 CST)
- greddy1_at_umd.edu (Fri Feb 09 2007 - 19:51:24 CST)
Bug in VMD main?
- Ahmet Bakan (Sat Mar 03 2012 - 12:25:05 CST)
- John Stone (Sat Mar 03 2012 - 12:37:43 CST)
Bug in VMD-1.6 (linux, GL)
- John Stone (Fri Mar 09 2001 - 00:25:26 CST)
- Timm Essigke (Mon Mar 05 2001 - 16:21:53 CST)
Bug in VMD-1.8.7 multiseq functionality
- genie lfs (Wed Jun 02 2010 - 04:54:48 CDT)
Bug in VMD?
- John Stone (Thu Mar 03 2011 - 13:38:58 CST)
- Sujata Sovani (Thu Mar 03 2011 - 12:15:16 CST)
bug report in VMD 1.8.5
- Leonardo Trabuco (Wed Feb 28 2007 - 14:15:11 CST)
- Nichols A. Romero (Wed Feb 28 2007 - 14:10:47 CST)
- John Stone (Tue Feb 27 2007 - 12:48:46 CST)
- Jerome Henin (Mon Feb 26 2007 - 19:32:29 CST)
- Axel Kohlmeyer (Mon Feb 26 2007 - 17:26:38 CST)
- Nichols A. Romero (Mon Feb 26 2007 - 17:03:54 CST)
- John Stone (Mon Feb 26 2007 - 16:41:14 CST)
- Nichols A. Romero (Mon Feb 26 2007 - 16:28:41 CST)
- Nichols A. Romero (Mon Feb 26 2007 - 16:24:53 CST)
BUG with MODEL card in PDB file
- John Stone (Mon Sep 20 2004 - 16:02:12 CDT)
- John Stone (Mon Sep 20 2004 - 15:39:29 CDT)
- Nicholson, James D Mr ARO (Mon Sep 20 2004 - 15:34:41 CDT)
bug?
- Ioana Cozmuta (Fri Jan 17 2003 - 22:08:41 CST)
Bugfix: new save_state.tcl for VMD 1.8 installations...
- John Stone (Fri Jan 31 2003 - 14:02:44 CST)
Bugs ? Representation window does not update new material
- John Stone (Fri Oct 23 2009 - 11:06:20 CDT)
- TRINH Minh Hieu (Fri Oct 23 2009 - 10:52:39 CDT)
- John Stone (Fri Oct 23 2009 - 09:56:47 CDT)
- TRINH Minh Hieu (Fri Oct 23 2009 - 08:57:49 CDT)
Build a VMD forum?
- Axel Kohlmeyer (Wed Mar 19 2008 - 16:08:27 CDT)
- Stanley, Yemin Shi (Wed Mar 19 2008 - 15:49:08 CDT)
build dependency
- Axel Kohlmeyer (Fri Apr 09 2010 - 04:37:59 CDT)
- Ajasja LjubetiÄ (Fri Apr 09 2010 - 03:43:19 CDT)
- Knut Jørgen Bjuland (Fri Apr 09 2010 - 02:28:48 CDT)
Building a membrane from a individual surfactant molecule
- surendra jain (Mon Nov 08 2010 - 06:27:02 CST)
Building a sphere of atoms around a chosen atom
- Axel Kohlmeyer (Tue Jan 03 2006 - 05:03:53 CST)
- Chaitanya Krishna A (Mon Jan 02 2006 - 08:01:49 CST)
building an uncoming sulfide bridge
- JC Gumbart (Thu Jul 10 2008 - 11:17:46 CDT)
- Jim Pfaendtner (Thu Jul 10 2008 - 08:56:32 CDT)
building bilayer with DOPC or other lipids
- PREETA DATTA (Fri Feb 16 2007 - 04:29:41 CST)
building loops
- Peter Freddolino (Tue Jan 13 2009 - 19:18:55 CST)
- riya doreen (Tue Jan 13 2009 - 18:53:09 CST)
Building LPS membrane
- dipti lele (Sun Jun 07 2009 - 00:35:50 CDT)
Building plugins with Borland Bcc32
- Nicolas CHARVIN (Tue Mar 15 2005 - 11:30:14 CST)
- John Stone (Mon Mar 14 2005 - 09:47:35 CST)
- Nicolas CHARVIN (Mon Mar 14 2005 - 04:41:04 CST)
Building polymer psf from monomer topology
- Alexandre Suman de Araujo (Thu Jul 30 2009 - 14:48:13 CDT)
building psf with CMAP, old topology remark entries still in psf
- Sebastian Stolzenberg (Fri Apr 10 2009 - 18:22:15 CDT)
Building VMD in Windows
- John Stone (Mon May 01 2006 - 10:17:19 CDT)
- Chang Hu (Sun Apr 30 2006 - 22:42:34 CDT)
- John Stone (Sun Apr 30 2006 - 09:11:01 CDT)
- Chang Hu (Sun Apr 30 2006 - 01:07:52 CDT)
- John Stone (Sat Apr 29 2006 - 22:48:09 CDT)
- Chang Hu (Sat Apr 29 2006 - 22:12:23 CDT)
building VMD is tricky -please help
- Rich Cook (Wed Dec 02 2009 - 15:14:03 CST)
- John Stone (Wed Dec 02 2009 - 13:39:53 CST)
- Rich Cook (Wed Dec 02 2009 - 13:26:42 CST)
- John Stone (Tue Dec 01 2009 - 19:51:37 CST)
- Axel Kohlmeyer (Tue Dec 01 2009 - 18:31:54 CST)
- Rich Cook (Tue Dec 01 2009 - 17:50:48 CST)
- John Stone (Tue Dec 01 2009 - 15:27:37 CST)
- John Stone (Tue Dec 01 2009 - 14:03:53 CST)
- Rich Cook (Tue Dec 01 2009 - 13:59:29 CST)
- John Stone (Tue Dec 01 2009 - 10:05:01 CST)
- Pieter van 't Hof (Tue Dec 01 2009 - 03:40:05 CST)
- Dipesh Bhattarai (Mon Nov 30 2009 - 19:32:09 CST)
- Rich Cook (Mon Nov 30 2009 - 17:49:23 CST)
building VMD on LINUX
- John Stone (Tue Mar 17 2009 - 10:03:16 CDT)
- Axel Kohlmeyer (Tue Mar 17 2009 - 08:58:38 CDT)
- Raluca Mihaela ANDREI (Tue Mar 17 2009 - 06:51:51 CDT)
Building VMD on OS X 10.6 with Python and CUDA support
- John Stone (Tue Jul 20 2010 - 10:22:23 CDT)
- John Stone (Tue Jul 20 2010 - 10:23:56 CDT)
- Ian Stokes-Rees (Fri Jul 16 2010 - 02:41:24 CDT)
- Ian Stokes-Rees (Fri Jul 16 2010 - 02:24:38 CDT)
- Ian Stokes-Rees (Thu Jul 15 2010 - 22:44:34 CDT)
building VMD on SGI IRIX 6.x
- Joseph Landman (Wed Mar 26 1997 - 11:55:35 CST)
Building VMD on windows 2000
- B. Bennion (Mon Dec 16 2002 - 15:35:51 CST)
Building VMD under Windows 2000
- John Stone (Mon Sep 18 2000 - 09:53:51 CDT)
- Laurence F. Wood (Sun Sep 17 2000 - 19:42:28 CDT)
Buried Surface Area
- John Stone (Fri May 13 2005 - 09:52:30 CDT)
- Matthew Wilce (Fri May 13 2005 - 09:33:36 CDT)
C NH1 C minimization error
- Sourmaidou, Damiani (Thu Jan 17 2008 - 06:43:18 CST)
C-terminus link to side chain amine
- Al-Ali, Hassan (Tue Oct 12 2010 - 08:33:46 CDT)
ca contact map
- John Stone (Tue Feb 17 2004 - 10:40:01 CST)
- Y U Sasidhar (Mon Feb 16 2004 - 20:36:06 CST)
CA distance command
- ban arn (Thu Feb 03 2011 - 08:16:14 CST)
CA-CA distances in a trayectory
- Luis Gracia (Thu Apr 14 2005 - 15:44:45 CDT)
- Luis Gracia (Thu Apr 14 2005 - 12:18:00 CDT)
- Axel Kohlmeyer (Thu Apr 14 2005 - 09:07:57 CDT)
- Nuno R. L. Ferreira (Thu Apr 14 2005 - 03:29:03 CDT)
- Michel Espinoza-Fonseca (Wed Apr 13 2005 - 18:31:10 CDT)
Ca-dist script
- Justin Gullingsrud (Fri Oct 13 2000 - 13:29:23 CDT)
- Troy Wymore (Thu Oct 12 2000 - 13:36:59 CDT)
caculate the RMSD of 10 DNA
- Justin Gullingsrud (Wed Mar 07 2001 - 23:16:30 CST)
- Kuen Phon Wu (Wed Mar 07 2001 - 22:50:24 CST)
Calculate accessible surface area
- John Stone (Tue Aug 17 2004 - 13:12:05 CDT)
- Shirley Li (Mon Aug 16 2004 - 19:35:29 CDT)
- John Stone (Mon Aug 16 2004 - 14:12:02 CDT)
- Shirley Li (Fri Aug 13 2004 - 17:14:33 CDT)
calculate atom distance between two chain
- John Stone (Mon Jul 18 2011 - 09:57:59 CDT)
- hamze rahimi (Mon Jul 18 2011 - 06:31:04 CDT)
calculate charges of the binding site residues with psfgen
- Axel Kohlmeyer (Sun May 10 2009 - 07:00:29 CDT)
- Thomas Evangelidis (Sat May 09 2009 - 22:54:16 CDT)
- Thomas Evangelidis (Wed May 06 2009 - 20:19:54 CDT)
Calculate density
- Axel Kohlmeyer (Wed Nov 21 2007 - 14:20:15 CST)
- Jianhui Tian (Mon Nov 19 2007 - 15:21:20 CST)
Calculate End-End distance for DCD
- Ana Celia Araujo Vila Verde (Tue Mar 13 2007 - 16:17:48 CDT)
- Jianhui Tian (Tue Mar 13 2007 - 15:17:00 CDT)
Calculate Free Volume?
- Axel Kohlmeyer (Mon Oct 19 2009 - 08:59:32 CDT)
- YingZhe (Sun Oct 18 2009 - 20:07:30 CDT)
calculate rmsd in a loop:feedback [sorry if you get it twice]
- Axel Kohlmeyer (Fri Nov 18 2005 - 08:54:02 CST)
- andrea spitaleri (Fri Nov 18 2005 - 10:16:01 CST)
- andrea spitaleri (Fri Nov 18 2005 - 05:31:21 CST)
- l.spitzer_at_fr.fournierpharma.com (Fri Nov 18 2005 - 04:48:26 CST)
- Nuno R. L. Ferreira (Fri Nov 18 2005 - 04:10:16 CST)
- andrea spitaleri (Fri Nov 18 2005 - 03:42:29 CST)
- Luis Gracia (Thu Nov 17 2005 - 12:11:20 CST)
- Axel Kohlmeyer (Thu Nov 17 2005 - 06:20:35 CST)
- Nuno R. L. Ferreira (Thu Nov 17 2005 - 03:31:13 CST)
- andrea spitaleri (Thu Nov 17 2005 - 02:50:19 CST)
calculate side-chain dihedral/torsion angles
- Ajasja LjubetiÄ (Tue Jun 29 2010 - 09:14:08 CDT)
- Ajasja LjubetiÄ (Mon Apr 12 2010 - 14:24:17 CDT)
- Ajasja LjubetiÄ (Mon Apr 12 2010 - 12:36:36 CDT)
- Axel Kohlmeyer (Mon Apr 12 2010 - 08:58:28 CDT)
- Ajasja LjubetiÄ (Mon Apr 12 2010 - 08:45:13 CDT)
- Axel Kohlmeyer (Mon Apr 12 2010 - 08:08:08 CDT)
- Ajasja LjubetiÄ (Mon Apr 12 2010 - 06:38:16 CDT)
- Axel Kohlmeyer (Mon Apr 12 2010 - 05:43:37 CDT)
- Ajasja LjubetiÄ (Mon Apr 12 2010 - 03:43:25 CDT)
Calculate the area of overlap?
- John Stone (Mon May 23 2005 - 10:22:28 CDT)
- Brian Kidd (Sat May 21 2005 - 02:01:04 CDT)
calculate the solvent molecule within a cut off from protein
- aiswarya pawar (Thu Sep 15 2011 - 05:36:25 CDT)
Calculate VolMap for every frame by a script
- Axel Kohlmeyer (Tue Feb 27 2007 - 17:25:16 CST)
- Bob Johnson (Tue Feb 27 2007 - 16:21:12 CST)
calculate volume
- John Stone (Sat Mar 08 2008 - 19:03:06 CST)
- Dong Xu (Sat Mar 08 2008 - 17:28:39 CST)
- Axel Kohlmeyer (Sat Mar 08 2008 - 12:29:19 CST)
- Dong Xu (Sat Mar 08 2008 - 11:09:36 CST)
- John Stone (Sat Mar 08 2008 - 00:01:06 CST)
- Dong Xu (Fri Mar 07 2008 - 22:46:28 CST)
- John Stone (Fri Mar 07 2008 - 22:20:45 CST)
- Dong Xu (Fri Mar 07 2008 - 21:20:40 CST)
Calculating acyl chain order parameter profile on phospholipid vesicles
- dimka (Tue Jan 13 2009 - 10:28:43 CST)
- Cesar Luis Avila (Thu Jan 08 2009 - 15:43:55 CST)
Calculating and drawing symmetry axes
- Eugene Valkov (Thu Dec 02 2004 - 13:37:14 CST)
Calculating angles between subunits
- John Stone (Thu Nov 06 2003 - 16:10:35 CST)
- John Stone (Fri Oct 24 2003 - 19:11:25 CDT)
- Markus Laub (Wed Oct 22 2003 - 07:37:44 CDT)
calculating b-factors from trajectories
- gozorows_at_uci.edu (Wed May 23 2007 - 14:00:53 CDT)
- Brian Bennion (Wed May 23 2007 - 10:34:57 CDT)
- Leandro Martínez (Tue May 22 2007 - 20:57:01 CDT)
- gozorows_at_uci.edu (Tue May 22 2007 - 17:53:27 CDT)
Calculating changes
- Peter Freddolino (Tue Dec 12 2006 - 14:07:18 CST)
- Per Jr. Greisen (Tue Dec 12 2006 - 12:56:37 CST)
Calculating dipole moment of protein
- Axel Kohlmeyer (Fri Mar 02 2007 - 07:41:25 CST)
- Per Jr. Greisen (Fri Mar 02 2007 - 06:26:23 CST)
calculating distance between center of geometry/mass of methyl hydrogens for all residue pairs
- Zu Thur Yew (Mon Mar 19 2007 - 18:48:41 CDT)
calculating lipid order parameters
- Philip Fowler (Wed Sep 21 2005 - 07:54:59 CDT)
Calculating minimal distance between two groups
- eladp_at_hplus.tau.ac.il (Mon Nov 14 2005 - 10:02:59 CST)
Calculating parameters in lipid bilayers
- Andrés Morales (Thu Oct 20 2011 - 22:04:03 CDT)
Calculating pocket volume
- ben rodriguez (Thu Aug 28 2008 - 16:37:55 CDT)
- Peter Freddolino (Thu Aug 28 2008 - 17:27:44 CDT)
Calculating RDF from xyz file
- Axel Kohlmeyer (Thu Mar 01 2012 - 17:36:46 CST)
- siladitya mukherjee (Thu Mar 01 2012 - 16:38:54 CST)
Calculating RMSD on two sets of points
- Axel Kohlmeyer (Tue May 10 2011 - 10:43:51 CDT)
- Carolyn Phillips (Tue May 10 2011 - 10:13:56 CDT)
- Carolyn Phillips (Tue May 10 2011 - 09:57:25 CDT)
Calculating RMSF plots without using scripts!!!
- Robert Selwyne (Mon Jun 05 2006 - 03:36:54 CDT)
Calculating system net charge with tcl in VMD
- Eduardo Cruz-Chu (Mon Apr 27 2009 - 10:50:01 CDT)
- Peter Freddolino (Mon Apr 27 2009 - 07:02:18 CDT)
- Athanassios Stavrakoudis (Mon Apr 27 2009 - 05:12:18 CDT)
- DimitryASuplatov (Mon Apr 27 2009 - 04:43:34 CDT)
Calculating the Tilt Angle of a non-helical peptide
- Axel Kohlmeyer (Wed Mar 19 2008 - 21:52:58 CDT)
- Axel Kohlmeyer (Wed Mar 19 2008 - 21:07:06 CDT)
- Arneh Babakhani (Wed Mar 19 2008 - 21:37:45 CDT)
- Arneh Babakhani (Wed Mar 19 2008 - 20:24:38 CDT)
Calculating the torsion angles in nucleic acids
- Peter Freddolino (Thu Sep 11 2008 - 08:52:36 CDT)
- mon_sharma_at_research.iiit.ac.in (Thu Sep 11 2008 - 06:40:54 CDT)
Calculating volumes enclosed by SAS
- Deepangi Pandit (Fri Nov 21 2008 - 16:09:12 CST)
- Ghaleb El Masri (Fri Nov 21 2008 - 14:44:39 CST)
Calculating volumetric data for a molecule
- John Stone (Tue Jul 24 2007 - 23:10:06 CDT)
- Cesar Luis Avila (Tue Jul 24 2007 - 17:30:43 CDT)
calculation hydrogen bond.
- JC Gumbart (Fri Oct 21 2011 - 06:55:18 CDT)
- subrata paul (Thu Oct 20 2011 - 02:19:04 CDT)
calculation limit of gofr?
- Axel Kohlmeyer (Thu Jul 05 2007 - 09:47:43 CDT)
- Philipp Schön (Thu Jul 05 2007 - 10:16:00 CDT)
calculation of alpha helical content
- Peter Freddolino (Tue Dec 11 2007 - 12:05:04 CST)
- L. Michel Espinoza-Fonseca (Tue Dec 11 2007 - 11:18:14 CST)
- L. Michel Espinoza-Fonseca (Tue Dec 11 2007 - 10:29:24 CST)
- Peter Freddolino (Tue Dec 11 2007 - 10:39:05 CST)
calculation of binding energy
- vani panguluri (Wed Mar 16 2011 - 23:06:45 CDT)
calculation of free energy between lipid membrane and protein
- Axel Kohlmeyer (Thu Mar 01 2007 - 11:40:00 CST)
- Shulin Zhuang (Thu Mar 01 2007 - 01:11:10 CST)
- Shulin Zhuang (Thu Mar 01 2007 - 00:17:25 CST)
Calculation of ligand displacement Vs time
- Ban Arn (Mon Jan 30 2012 - 03:53:27 CST)
calculation of RMS values
- Andrew Dalke (Wed Aug 19 1998 - 13:49:12 CDT)
- Christoph Schneider (Wed Aug 19 1998 - 04:05:51 CDT)
Calculation of RMSF
- John Stone (Mon Dec 19 2005 - 17:21:51 CST)
- John Stone (Wed Dec 14 2005 - 18:45:30 CST)
- h9826299_at_hkusua.hku.hk (Wed Dec 14 2005 - 17:10:28 CST)
Calculation the Surface Area/Volume of a Protein Cavity
- MUHAMMAD IMTIA SHAFIQ (Thu Dec 10 2009 - 05:24:12 CST)
Call to Stride program failed
- John Stone (Fri Feb 18 2005 - 10:35:00 CST)
- Jérôme Hénin (Fri Feb 18 2005 - 10:05:37 CST)
- John Stone (Fri Feb 18 2005 - 09:49:33 CST)
- Jérôme Hénin (Fri Feb 18 2005 - 09:42:27 CST)
Calling all DCD files in a directory sequentially using CatDCD
- Cosseddu, Salvatore (Tue Jan 24 2012 - 03:47:29 CST)
- Bryan Roessler (Mon Jan 23 2012 - 18:24:07 CST)
- Bryan Roessler (Mon Jan 23 2012 - 16:15:48 CST)
- John Stone (Mon Jan 23 2012 - 15:24:51 CST)
- Bryan Roessler (Mon Jan 23 2012 - 15:11:34 CST)
Calling Python hackers....
- John Stone (Tue Feb 08 2005 - 14:00:36 CST)
- Charles_at_Schwieters.org (Tue Feb 08 2005 - 11:11:21 CST)
- John Stone (Sun Feb 06 2005 - 20:00:30 CST)
- Justin Gullingsrud (Fri Feb 04 2005 - 17:50:58 CST)
- John Stone (Fri Feb 04 2005 - 14:56:59 CST)
calling scripts from the command line
- John Stone (Thu Dec 08 2005 - 18:12:26 CST)
- Galip Gurkan Yardimci (Thu Dec 01 2005 - 04:36:45 CST)
Camera in VMD!!!
- Schreiner Eduard (Sat Oct 25 2008 - 00:18:58 CDT)
- Iman Salehinia (Fri Oct 24 2008 - 23:10:35 CDT)
camera position and scale
- John Stone (Wed Feb 01 2012 - 23:18:23 CST)
- Arham Amouie (Mon Jan 09 2012 - 08:09:46 CST)
Can a script change the projection?
- Jeff Taylor (Mon Jun 04 2001 - 15:04:53 CDT)
Can any of you help me out in building VMD pls
- John Stone (Mon Mar 11 2002 - 00:11:44 CST)
- John Stone (Fri Mar 08 2002 - 09:47:04 CST)
- Kiran, Kotresh (Fri Mar 08 2002 - 05:48:35 CST)
CAN ANY ONE HELP ME
- John Stone (Wed Jun 02 2010 - 12:51:24 CDT)
- vani panguluri (Wed Jun 02 2010 - 11:44:33 CDT)
- John Stone (Wed Jun 02 2010 - 11:01:15 CDT)
- vani panguluri (Wed Jun 02 2010 - 10:09:08 CDT)
Can anyone help me get the coordinate of the cylinders in the cartoon representation?
- John Stone (Wed Mar 03 2010 - 10:56:00 CST)
- Chen, Bo (NIH/NIDDK) [F] (Fri Feb 26 2010 - 11:11:42 CST)
Can anyone help me out with this script
- John Stone (Sun Apr 01 2007 - 23:03:24 CDT)
- Jianhui Tian (Sat Mar 31 2007 - 19:50:43 CDT)
- John Stone (Sat Mar 31 2007 - 00:05:17 CDT)
- Jianhui Tian (Fri Mar 30 2007 - 14:49:45 CDT)
Can bonds radius be controlled by tcl command?
- Axel Kohlmeyer (Wed May 13 2009 - 17:55:17 CDT)
- Roman Petrenko (Wed May 13 2009 - 17:09:09 CDT)
- John Stone (Wed May 13 2009 - 16:19:16 CDT)
- accomp lin (Wed May 13 2009 - 03:54:47 CDT)
Can Catdcd Write Out Periodic Cell Size Information?
- Tessa Young (Tue Nov 29 2011 - 23:06:25 CST)
- Pablo M. De Biase (Mon Nov 28 2011 - 17:41:40 CST)
- Axel Kohlmeyer (Mon Nov 28 2011 - 17:13:02 CST)
- Jeffrey Potoff (Mon Nov 28 2011 - 16:30:08 CST)
- Pablo M. De Biase (Mon Nov 28 2011 - 16:11:36 CST)
- Jeffrey Potoff (Mon Nov 28 2011 - 15:00:35 CST)
- Axel Kohlmeyer (Mon Nov 28 2011 - 11:45:47 CST)
- Pablo M. De Biase (Mon Nov 28 2011 - 10:39:55 CST)
- Tessa Young (Mon Nov 28 2011 - 01:20:31 CST)
Can I build a structure by VMD?
- Lixia Jin Day (Wed Jul 15 2009 - 14:29:01 CDT)
- John Stone (Wed Jul 15 2009 - 14:36:56 CDT)
can I combine several dcd files into one dcd file?
- John E. Kerrigan (Wed Jan 05 2005 - 12:52:38 CST)
- Justin Gullingsrud (Wed Jan 05 2005 - 10:30:56 CST)
- mashaojie163 (Wed Jan 05 2005 - 08:55:14 CST)
can not compile VMD plugin
- hongphuc nguyen (Wed Jun 22 2011 - 22:48:34 CDT)
- hongphuc nguyen (Wed Jun 22 2011 - 22:15:55 CDT)
Can not enter text in VMD plugin window
- John Stone (Mon Apr 28 2008 - 13:25:30 CDT)
- Dong Xu (Mon Apr 28 2008 - 13:04:52 CDT)
- John Stone (Sat Apr 26 2008 - 00:25:15 CDT)
- Dong Xu (Sat Apr 26 2008 - 00:10:04 CDT)
- John Stone (Fri Apr 25 2008 - 21:53:05 CDT)
- Axel Kohlmeyer (Fri Apr 25 2008 - 21:52:12 CDT)
- Dong Xu (Fri Apr 25 2008 - 21:21:16 CDT)
can not import Hessian/charge from single point calculation
- Bennion, Brian (Wed Jun 22 2011 - 12:55:36 CDT)
- Bennion, Brian (Tue Jun 21 2011 - 12:04:46 CDT)
- hongphuc nguyen (Tue Jun 21 2011 - 03:14:15 CDT)
Can paratools really parametrize a structure? Is it really finished?
- Ranyere Deyler (Mon Feb 28 2011 - 10:55:21 CST)
Can the CG model built from VMD be used as an Input of NAMD,GROMACS and any other MD program?
- Anton Arkhipov (Tue Apr 28 2009 - 10:34:04 CDT)
- Axel Kohlmeyer (Tue Apr 28 2009 - 08:32:24 CDT)
- wuxiao (Tue Apr 28 2009 - 02:52:44 CDT)
Can VMD add other organic solvent into system?
- weikai (Wed Sep 28 2005 - 02:51:38 CDT)
Can VMD add other solvent except water in system?
- Leonardo Sepulveda Durán (Mon Sep 26 2005 - 10:59:58 CDT)
- John Stone (Mon Sep 26 2005 - 10:12:51 CDT)
- Joshua D. Moore (Mon Sep 26 2005 - 06:21:38 CDT)
- weikai (Mon Sep 26 2005 - 03:17:42 CDT)
Can VMD build predicted protein structures by homology?
- John Stone (Fri Dec 03 2010 - 12:02:47 CST)
- Seweryn Bialasiewicz (Mon Nov 29 2010 - 21:43:11 CST)
can VMD display a box?
- Marc Baaden (Thu Nov 28 2002 - 07:26:05 CST)
- Minerva Gonzalez (Thu Nov 28 2002 - 12:23:15 CST)
Can vmd do symmetry operation?
- John Stone (Wed Oct 12 2005 - 17:03:56 CDT)
- mashaojie163 (Tue Oct 11 2005 - 21:49:00 CDT)
Can vmd select residues in radius of 3.5 to a specific residue?
- John Stone (Fri Mar 18 2005 - 08:16:15 CST)
- Marc Q. Ma (Fri Mar 18 2005 - 07:59:59 CST)
- J. Rui Rodrigues (Fri Mar 18 2005 - 06:21:08 CST)
- scopio (Fri Mar 18 2005 - 05:52:43 CST)
can VMD show artificial bond info?
- John Stone (Wed Oct 19 2005 - 18:52:46 CDT)
- jiwu liu (Wed Oct 19 2005 - 18:04:31 CDT)
Can VMD show the interactions between different structure part?
- Ben Chern (Thu Mar 27 2008 - 20:26:13 CDT)
- Ben Chern (Thu Mar 27 2008 - 06:35:56 CDT)
- Axel Kohlmeyer (Thu Mar 27 2008 - 06:43:41 CDT)
- Axel Kohlmeyer (Wed Mar 26 2008 - 23:19:40 CDT)
- Ben Chern (Wed Mar 26 2008 - 22:20:57 CDT)
Can VMD visualize forces?
- Thomas C. Bishop (Fri Jan 25 2008 - 09:44:29 CST)
- John Stone (Thu Jan 24 2008 - 18:01:20 CST)
- Yinglong Miao (Thu Jan 24 2008 - 17:16:14 CST)
can we control the number and distribution of solvate molecular
- John Stone (Wed Aug 12 2009 - 16:14:30 CDT)
- pxq ÅÓÑ©ÇÛ (Wed Aug 12 2009 - 03:02:33 CDT)
Can we fix the position of two atoms while minimization?
- John Stone (Wed Sep 29 2004 - 12:40:52 CDT)
- Shahid Qamar (Wed Sep 29 2004 - 10:39:50 CDT)
Can we get secondary structure from PDB files?
- Ben Chern (Wed Mar 26 2008 - 22:12:12 CDT)
- John Stone (Wed Mar 26 2008 - 21:26:46 CDT)
- Ben Chern (Wed Mar 26 2008 - 20:44:00 CDT)
- Axel Kohlmeyer (Wed Mar 26 2008 - 06:15:42 CDT)
- Ben Chern (Wed Mar 26 2008 - 04:02:04 CDT)
Can you show me an example of the .xyz file that is used to calculate the IR spectrum
- Axel Kohlmeyer (Mon Feb 23 2009 - 14:46:18 CST)
- Shuo Li (Mon Feb 23 2009 - 14:05:15 CST)
can't add packages
- Axel Kohlmeyer (Sat Jul 28 2007 - 17:32:46 CDT)
- karan uppal (Sat Jul 28 2007 - 12:59:37 CDT)
Can't compile VMD 1.8.3: Tachyon 0.97 needed
- John Stone (Fri Mar 18 2005 - 09:42:22 CST)
- Sangwoo Shim (Fri Mar 18 2005 - 03:49:33 CST)
- John Stone (Thu Feb 17 2005 - 09:48:00 CST)
- Sangwoo Shim (Thu Feb 17 2005 - 01:54:04 CST)
Can't execvp vmd_SOLARISX86
- Austin Small (Tue Sep 25 2007 - 16:14:16 CDT)
- John Stone (Sun Sep 23 2007 - 21:49:23 CDT)
- Austin Small (Sun Sep 23 2007 - 23:42:50 CDT)
CAN'T FIND BOND PARAMETERS FOR BOND C - CPB IN PARAMETER FILES
- snoze pa (Sun Feb 14 2010 - 12:47:04 CST)
- Francesco Pietra (Sun Feb 14 2010 - 11:32:57 CST)
- Francesco Pietra (Sun Feb 14 2010 - 10:26:01 CST)
Can't find C-PDB bond parameters
- Francesco Pietra (Mon Feb 15 2010 - 03:46:29 CST)
can't find file
- sarah k (Sun Apr 04 2010 - 12:02:56 CDT)
- John Stone (Mon Mar 29 2010 - 10:11:23 CDT)
- sarah k (Mon Mar 29 2010 - 02:46:20 CDT)
Can't import python math module
- John Stone (Mon Mar 24 2003 - 10:47:19 CST)
- Scott Stagg (Fri Mar 21 2003 - 10:16:14 CST)
Can't load a large dcd?
- John Stone (Fri Jan 27 2006 - 15:28:31 CST)
- John Stone (Thu Jan 26 2006 - 10:41:41 CST)
- Axel Kohlmeyer (Thu Jan 26 2006 - 07:09:22 CST)
- Vineet Pande (Thu Jan 26 2006 - 01:33:19 CST)
- Axel Kohlmeyer (Wed Jan 25 2006 - 10:52:41 CST)
- John Stone (Wed Jan 25 2006 - 10:23:36 CST)
- Vineet Pande (Wed Jan 25 2006 - 06:21:53 CST)
can't read pdb file
- Mary Lowe (Sun Mar 25 2007 - 08:26:31 CDT)
- John Stone (Sat Mar 24 2007 - 00:52:55 CDT)
- Mary Lowe (Fri Mar 23 2007 - 21:40:18 CDT)
can't see all frames in XYZ file
- John Stone (Thu Jun 30 2005 - 14:03:37 CDT)
- Valere Chen (Wed Jun 29 2005 - 14:42:50 CDT)
Can't set graphics window position to 0,0
- John Stone (Thu Mar 29 2012 - 10:20:27 CDT)
- Christoph Willing (Tue Mar 27 2012 - 18:17:10 CDT)
Cannot find "cionize plugin" in VMD
- John Stone (Wed Jul 21 2010 - 16:22:05 CDT)
- Parisa Akhski (Wed Jul 21 2010 - 13:31:39 CDT)
- John Stone (Tue Jul 20 2010 - 14:09:37 CDT)
- John Stone (Tue Jul 20 2010 - 12:42:15 CDT)
- Parisa Akhski (Tue Jul 20 2010 - 12:36:32 CDT)
- John Stone (Tue Jul 20 2010 - 09:41:53 CDT)
- Parisa Akhski (Fri Jul 16 2010 - 14:26:59 CDT)
Cannot load file for SASA analysis
- Lili Peng (Mon Jun 08 2009 - 20:39:16 CDT)
Cannot load Gromos96 trajectory file (attached)
- Axel Kohlmeyer (Mon Oct 17 2005 - 19:37:14 CDT)
- John Stone (Mon Oct 17 2005 - 17:11:32 CDT)
- Stanley Lan (Mon Oct 17 2005 - 16:26:17 CDT)
Cannot perform RMSD analysis
- John Stone (Wed Apr 02 2008 - 23:53:41 CDT)
- Maria Sanchez Farran (Wed Apr 02 2008 - 07:49:55 CDT)
Cannot read MSMS data files
- John Stone (Tue Jun 22 2010 - 11:37:48 CDT)
- John Stone (Mon Jun 21 2010 - 16:00:36 CDT)
- Jayne Wallace (Mon Jun 21 2010 - 09:12:07 CDT)
Cannot read MSMS facet file
- BIN ZHANG (Mon Feb 16 2009 - 17:05:31 CST)
- John Stone (Mon Feb 16 2009 - 00:27:26 CST)
- BIN ZHANG (Sun Feb 15 2009 - 23:54:52 CST)
Cannot run IED! :(
- John Stone (Thu Aug 03 2006 - 11:30:01 CDT)
- Peng Tao (Thu Aug 03 2006 - 11:23:03 CDT)
- John Stone (Thu Aug 03 2006 - 10:40:15 CDT)
- Axel Kohlmeyer (Thu Aug 03 2006 - 10:37:14 CDT)
- Peng Tao (Thu Aug 03 2006 - 10:00:30 CDT)
- Peng Tao (Thu Aug 03 2006 - 09:47:21 CDT)
- Peng Tao (Thu Aug 03 2006 - 09:04:00 CDT)
- John Stone (Wed Aug 02 2006 - 21:53:55 CDT)
- Peng Tao (Wed Aug 02 2006 - 21:13:04 CDT)
Cannot start CAVE display
- John Stone (Fri Aug 16 2002 - 11:32:42 CDT)
- Pawel Kedzierski (Thu Aug 15 2002 - 23:00:42 CDT)
- John Stone (Tue Aug 13 2002 - 15:15:27 CDT)
- Pawel Kedzierski (Tue Aug 13 2002 - 15:20:17 CDT)
cant connect Novint Falcon with VMD
- John Stone (Fri Aug 13 2010 - 15:18:58 CDT)
- Axel Kohlmeyer (Fri Aug 13 2010 - 14:30:28 CDT)
- John Stone (Fri Aug 13 2010 - 12:55:06 CDT)
- Axel Kohlmeyer (Fri Aug 13 2010 - 00:03:51 CDT)
- Shawn (Thu Aug 12 2010 - 15:25:26 CDT)
- John Stone (Thu Aug 12 2010 - 15:00:17 CDT)
- Shawn (Thu Aug 12 2010 - 14:48:31 CDT)
- Axel Kohlmeyer (Thu Aug 12 2010 - 14:22:13 CDT)
- Axel Kohlmeyer (Thu Aug 12 2010 - 14:37:14 CDT)
- Shawn (Thu Aug 12 2010 - 14:28:06 CDT)
- Shawn (Thu Aug 12 2010 - 13:21:56 CDT)
Cant start IED
- Axel Kohlmeyer (Tue Dec 01 2009 - 07:26:44 CST)
- Thomas Steinbrecher (Tue Dec 01 2009 - 05:00:15 CST)
capping or patching protein ends
- Peter Freddolino (Thu Mar 03 2011 - 17:51:20 CST)
- Tim Travers (Thu Mar 03 2011 - 15:13:33 CST)
- Mark Cunningham (Thu Mar 03 2011 - 14:32:08 CST)
- Tim Travers (Thu Mar 03 2011 - 11:39:11 CST)
- Ashlynne Monroe (Thu Mar 03 2011 - 10:40:37 CST)
capturing box dimensions from amber coordinate files
- John Stone (Wed Apr 06 2005 - 13:33:12 CDT)
- jbaucom_at_unity.ncsu.edu (Wed Apr 06 2005 - 12:39:08 CDT)
Card for VMD with OpenGL & Linux
- John Stone (Wed Apr 11 2001 - 01:31:59 CDT)
- Dominik Horinek (Mon Apr 09 2001 - 17:09:45 CDT)
- John Stone (Mon Apr 09 2001 - 16:46:34 CDT)
- Dominik Horinek (Mon Apr 09 2001 - 16:38:40 CDT)
carnal output trajectory
- Sanjeev B.S. (Wed Oct 30 2002 - 07:50:45 CST)
- Stéphane Teletchéa (Wed Oct 30 2002 - 07:50:19 CST)
- Vlad Cojocaru (Wed Oct 30 2002 - 07:25:36 CST)
- Vlad Cojocaru (Fri Oct 25 2002 - 04:50:55 CDT)
- Margaret Cheung (Thu Oct 24 2002 - 15:57:50 CDT)
- Vlad Cojocaru (Thu Oct 24 2002 - 15:07:35 CDT)
cartoon problems (encore)
- John Stone (Sat Feb 03 2007 - 15:39:17 CST)
- christopher (Sat Feb 03 2007 - 15:29:56 CST)
cartoon representation
- John Stone (Fri May 30 2003 - 15:46:30 CDT)
- Tyler Luchko (Fri May 30 2003 - 15:21:40 CDT)
- John Stone (Fri Nov 15 2002 - 09:58:43 CST)
- Robert Campbell (Fri Nov 15 2002 - 09:58:02 CST)
- John Stone (Thu Nov 14 2002 - 16:02:48 CST)
- stefano ricagno (Wed Nov 13 2002 - 06:27:33 CST)
Cartoon representation for large molecules
- John Stone (Fri Jan 02 2004 - 13:29:32 CST)
- Gadi Oron (Thu Jan 01 2004 - 03:52:04 CST)
- Aurore Zyto (Wed Dec 31 2003 - 15:43:11 CST)
cartoon representation of 1crn
- BETTLER Emmanuel (Fri Apr 23 2004 - 11:25:46 CDT)
cartoon selection
- John Stone (Tue Mar 14 2006 - 00:27:38 CST)
- Viswanadham Sridhara (Mon Mar 13 2006 - 13:02:53 CST)
Cartoons and secondary structure prediction
- Axel Kohlmeyer (Tue May 03 2011 - 07:05:39 CDT)
- Francisco José Taberner Sanchis (Tue May 03 2011 - 05:51:24 CDT)
Catching error info before it shuts down ...
- John Stone (Wed Feb 23 2005 - 17:37:44 CST)
- Dallas Warren (Wed Feb 23 2005 - 17:30:39 CST)
- John Stone (Wed Feb 23 2005 - 16:53:48 CST)
- Dallas Warren (Wed Feb 23 2005 - 16:49:33 CST)
- John Stone (Wed Feb 23 2005 - 16:33:17 CST)
- Dallas Warren (Wed Feb 23 2005 - 16:23:33 CST)
- John Stone (Wed Feb 23 2005 - 11:19:30 CST)
- Dallas Warren (Mon Feb 21 2005 - 16:49:50 CST)
- John Stone (Mon Feb 21 2005 - 11:43:05 CST)
- Dallas Warren (Mon Feb 21 2005 - 00:02:51 CST)
- Dallas Warren (Sun Feb 20 2005 - 16:03:51 CST)
- Brian Bennion (Fri Feb 18 2005 - 10:01:32 CST)
- Axel Kohlmeyer (Fri Feb 18 2005 - 03:39:48 CST)
- Dallas Warren (Thu Feb 17 2005 - 23:41:08 CST)
catdcd
- John Stone (Fri Oct 23 2009 - 13:44:52 CDT)
- Eric H. Lee (Mon Oct 12 2009 - 10:05:09 CDT)
- Axel Kohlmeyer (Mon Oct 12 2009 - 10:43:42 CDT)
- Katherine Parra (Mon Oct 12 2009 - 09:59:23 CDT)
- John Stone (Fri Aug 29 2008 - 01:45:45 CDT)
- Peter Freddolino (Wed Aug 27 2008 - 22:04:10 CDT)
- Robert Fenwick (Wed Aug 27 2008 - 12:16:14 CDT)
- John Stone (Wed Aug 27 2008 - 11:58:58 CDT)
- Robert Fenwick (Wed Aug 27 2008 - 08:01:38 CDT)
- Axel Kohlmeyer (Mon Apr 14 2008 - 12:08:34 CDT)
- Richard Swenson (Mon Apr 14 2008 - 13:28:19 CDT)
- Raul Araya (Mon Apr 14 2008 - 12:01:41 CDT)
- J. Rui Rodrigues (Wed Jul 13 2005 - 10:14:57 CDT)
- Francesco Iori (Wed Jul 13 2005 - 04:05:40 CDT)
catDCD 4.0 and xplor
- John Stone (Tue May 30 2006 - 15:41:02 CDT)
- Peter Jones (Mon May 29 2006 - 23:23:10 CDT)
catdcd and velocity dcd file
- Axel Kohlmeyer (Fri Jul 01 2011 - 10:45:16 CDT)
- arash azari (Fri Jul 01 2011 - 10:06:11 CDT)
CatDCD Desmond Support
- John Stone (Fri Oct 23 2009 - 13:44:15 CDT)
- John Stone (Wed Oct 07 2009 - 13:24:00 CDT)
- andrea carotti (Wed Oct 07 2009 - 10:31:53 CDT)
catdcd in Windows
- John Stone (Wed Sep 09 2009 - 13:38:54 CDT)
- Wei Chen (Tue Sep 08 2009 - 21:44:25 CDT)
CatDCD Question
- Saladino, Alex (Tue Mar 04 2003 - 11:51:10 CST)
catdcd usage with Desmond trajectory
- Irene Newhouse (Wed Aug 25 2010 - 15:33:25 CDT)
- John Stone (Tue Aug 24 2010 - 16:44:25 CDT)
- Irene Newhouse (Thu Aug 19 2010 - 22:26:26 CDT)
- John Stone (Thu Aug 19 2010 - 20:32:23 CDT)
- Irene Newhouse (Thu Aug 19 2010 - 16:19:10 CDT)
catdcd vs readdcd.h error checking
- Brian Bennion (Sat Aug 20 2005 - 11:22:16 CDT)
- Justin Gullingsrud (Fri Aug 19 2005 - 18:56:52 CDT)
- Brian Bennion (Fri Aug 19 2005 - 11:53:55 CDT)
CatDcd Windows Version
- NAMITA BHADRA (Wed Aug 17 2011 - 23:52:28 CDT)
catDCD- convert DCD format
- John Stone (Wed Aug 13 2008 - 10:58:21 CDT)
- Semorale (Tue Aug 12 2008 - 16:10:27 CDT)
catdcd.LINUX
- John Stone (Thu Feb 16 2006 - 14:17:03 CST)
- John Stone (Thu Feb 16 2006 - 13:32:27 CST)
- lily jin (Thu Feb 16 2006 - 13:24:16 CST)
Catdcd?
- Anirban Ghosh (Mon Oct 20 2008 - 06:31:25 CDT)
- bo liu (Fri Oct 17 2008 - 00:01:59 CDT)
- Axel Kohlmeyer (Thu Oct 16 2008 - 13:23:14 CDT)
- Christopher Gillespie (Thu Oct 16 2008 - 12:25:42 CDT)
- Christopher Hartshorn (Thu Oct 16 2008 - 11:37:15 CDT)
cave
- Ahmed Nawar (Tue Nov 27 2007 - 01:00:42 CST)
- John Stone (Mon Nov 26 2007 - 11:44:33 CST)
- Ahmed Nawar (Mon Nov 26 2007 - 06:12:41 CST)
- Axel Kohlmeyer (Mon Nov 26 2007 - 04:28:18 CST)
- Ahmed Nawar (Mon Nov 26 2007 - 00:54:23 CST)
- Axel Kohlmeyer (Sun Nov 25 2007 - 12:58:47 CST)
- John Stone (Sun Nov 25 2007 - 12:54:56 CST)
- Ahmed Nawar (Sun Nov 25 2007 - 09:06:37 CST)
- John Stone (Thu Nov 22 2007 - 10:21:30 CST)
- Ahmed Nawar (Thu Nov 22 2007 - 06:09:24 CST)
- John Stone (Wed Sep 07 2005 - 15:47:10 CDT)
- Hai-Jun Su (Wed Sep 07 2005 - 15:35:10 CDT)
- Hai-Jun Su (Wed Sep 07 2005 - 10:30:05 CDT)
- Dan Strahs (Wed Sep 07 2005 - 08:59:22 CDT)
- John Stone (Tue Sep 06 2005 - 23:32:18 CDT)
- Hai-Jun Su (Tue Sep 06 2005 - 23:20:07 CDT)
CAVE & Vmd
- Christian Wohlschlager (Fri Jul 27 2007 - 01:45:45 CDT)
- John Stone (Thu Jul 26 2007 - 16:06:00 CDT)
- Christian Wohlschlager (Wed Jul 25 2007 - 08:21:27 CDT)
- John Stone (Tue Jul 17 2007 - 11:46:13 CDT)
- Christian Wohlschlager (Fri Jul 06 2007 - 02:06:54 CDT)
CAVE and Flystick control
- John Stone (Fri May 27 2011 - 14:41:03 CDT)
- John Stone (Wed May 04 2011 - 15:15:20 CDT)
- David Joiner (Wed May 04 2011 - 14:52:34 CDT)
Cave and usr keys defined in tcl
- John Stone (Wed Feb 28 2007 - 00:00:22 CST)
- Christian Wohlschlager (Tue Feb 27 2007 - 05:46:38 CST)
CAVE on OS X
- John Stone (Tue Dec 14 2004 - 09:44:54 CST)
- Ebrahim Mayat (Mon Dec 13 2004 - 02:57:27 CST)
CAVE Question
- John Stone (Mon Dec 11 2006 - 10:21:12 CST)
- Christian Wohlschlager (Mon Dec 11 2006 - 00:28:12 CST)
- John Stone (Fri Dec 01 2006 - 10:53:06 CST)
- Christian Wohlschlager (Thu Nov 30 2006 - 08:22:46 CST)
- John Stone (Wed Nov 29 2006 - 14:25:37 CST)
- Christian Wohlschlager (Tue Nov 28 2006 - 08:16:48 CST)
- Axel Kohlmeyer (Mon Nov 27 2006 - 18:47:22 CST)
- John Stone (Mon Nov 27 2006 - 14:50:57 CST)
- Christian Wohlschlager (Mon Nov 27 2006 - 02:39:04 CST)
CAVE Sensor Question
- John Stone (Tue Dec 19 2006 - 01:10:20 CST)
- Christian Wohlschlager (Mon Dec 18 2006 - 01:28:53 CST)
cavetracker
- John Stone (Fri Jan 18 2002 - 01:32:48 CST)
- Derek R. Ploor (Wed Jan 16 2002 - 15:00:31 CST)
cavity/pocket representation
- Luis Guillermo Cota Preciado (Thu May 04 2006 - 12:48:53 CDT)
- Ran Friedman (Thu May 04 2006 - 03:17:24 CDT)
- John Stone (Tue May 02 2006 - 13:05:12 CDT)
- Wei Fu (Linda) (Tue May 02 2006 - 13:50:38 CDT)
CCL: show ruler in VMD
- John Stone (Fri Jun 01 2007 - 14:11:07 CDT)
CCL:md rookie update
- Konrad Hinsen (Thu Jan 08 1998 - 06:50:36 CST)
CCL:md rookie update (fwd)
- root (Thu Jan 08 1998 - 12:44:37 CST)
- root (Thu Jan 08 1998 - 12:41:23 CST)
- root (Thu Jan 08 1998 - 12:41:39 CST)
CCL:NAMD failure on Berendsen pressure scheme
- Ioana Cozmuta (Thu Jul 31 2003 - 13:03:24 CDT)
- Ioana Cozmuta (Wed Jul 30 2003 - 11:51:49 CDT)
CCL:program for viewing MD
- Barry Isralewitz (Mon Oct 23 2000 - 11:55:02 CDT)
ccp4 in vmd
- John Stone (Wed Dec 02 2009 - 22:41:17 CST)
- pebblepeddle_at_gmail.com (Wed Dec 02 2009 - 21:55:58 CST)
CDROM/Windows/Linux
- Surjit Dixit (Fri Sep 20 2002 - 07:29:47 CDT)
- Stéphane Teletchéa (Fri Sep 20 2002 - 04:24:12 CDT)
- John Stone (Thu Sep 19 2002 - 15:16:54 CDT)
- Surjit Dixit (Thu Sep 19 2002 - 14:35:46 CDT)
center command
- Ioana Cozmuta (Fri May 23 2003 - 17:02:51 CDT)
center of mass
- Axel Kohlmeyer (Mon Jan 12 2009 - 14:37:05 CST)
- Alison Grinthal (Mon Jan 12 2009 - 13:51:43 CST)
center of mass position
- John Stone (Tue Aug 24 2004 - 10:03:40 CDT)
- Andre Farias de Moura (Tue Aug 24 2004 - 07:07:24 CDT)
center of unit cell
- Bhargava (Thu Apr 08 2010 - 11:10:51 CDT)
- Axel Kohlmeyer (Thu Apr 08 2010 - 11:13:45 CDT)
- Yinglong Miao (Thu Apr 08 2010 - 10:10:17 CDT)
center scaling and rotation
- John Stone (Fri Jun 22 2007 - 17:25:01 CDT)
- Tim Meyer (Thu Jun 21 2007 - 09:35:40 CDT)
center selection problem
- Justin Gullingsrud (Sat Apr 10 2004 - 13:48:19 CDT)
- Mike McCallum (Sat Apr 10 2004 - 00:17:26 CDT)
Centering GPCR onto Lipid Bilayer
- Akshay Patny (Tue Sep 19 2006 - 16:19:59 CDT)
- Ting Wang (Tue Sep 19 2006 - 13:28:40 CDT)
- Akshay Patny (Mon Sep 18 2006 - 14:28:35 CDT)
Centering of the view on one atom
- Axel Kohlmeyer (Wed Mar 31 2004 - 14:12:51 CST)
- CHAUMONT Alain (Wed Mar 31 2004 - 09:42:09 CST)
centering problem in trajectory tool
- Markus K. Dahlgren (Mon Oct 17 2011 - 18:46:35 CDT)
- Zumot, Elia Nabil (Mon Oct 17 2011 - 17:58:49 CDT)
- Markus K. Dahlgren (Mon Oct 17 2011 - 17:46:26 CDT)
- Zumot, Elia Nabil (Mon Oct 10 2011 - 15:34:54 CDT)
- Markus K. Dahlgren (Mon Oct 10 2011 - 15:09:35 CDT)
- Zumot, Elia Nabil (Mon Oct 10 2011 - 11:19:48 CDT)
- Markus K. Dahlgren (Mon Oct 10 2011 - 08:59:11 CDT)
centering seection on screen
- Lubos Vrbka (Thu Apr 17 2003 - 10:38:25 CDT)
- B. Bennion (Thu Apr 17 2003 - 09:50:32 CDT)
- Lubos Vrbka (Thu Apr 17 2003 - 05:28:46 CDT)
centering selection on screen
- John Stone (Thu Apr 17 2003 - 12:38:35 CDT)
centering the molecule
- John Stone (Mon Oct 03 2005 - 16:32:10 CDT)
- Jeffrey Tseng (Sun Oct 02 2005 - 17:53:00 CDT)
Centre of gravity for movies
- John Stone (Tue Sep 17 2002 - 11:25:07 CDT)
- Mark Hilge (Fri Sep 13 2002 - 12:21:14 CDT)
CG bead definition
- Anton Arkhipov (Mon Aug 31 2009 - 23:24:05 CDT)
- Anton Arkhipov (Mon Nov 24 2008 - 18:36:23 CST)
- BIN ZHANG (Mon Nov 24 2008 - 18:24:35 CST)
- Anton Arkhipov (Mon Nov 24 2008 - 16:43:28 CST)
- BIN ZHANG (Sun Nov 23 2008 - 23:56:12 CST)
CG Builder
- Axel Kohlmeyer (Sun Jan 30 2011 - 08:54:59 CST)
- mohamad rahimi (Sun Jan 30 2011 - 06:14:03 CST)
- Axel Kohlmeyer (Sun Jan 30 2011 - 05:53:54 CST)
- mohamad rahimi (Sun Jan 30 2011 - 03:31:23 CST)
- Roman Petrenko (Mon Nov 09 2009 - 15:01:26 CST)
- Francesco Pietra (Mon Nov 09 2009 - 14:06:44 CST)
cg ionization
- Sibel Cakan (Sun Sep 19 2010 - 15:28:14 CDT)
- Sibel Cakan (Sun Sep 19 2010 - 15:16:06 CDT)
CG lipid bilayer vmd 1.8.7
- Anton Arkhipov (Mon Dec 07 2009 - 10:15:53 CST)
- Francesco Pietra (Sun Dec 06 2009 - 13:24:06 CST)
- Anton Arkhipov (Sun Dec 06 2009 - 00:35:46 CST)
- Peter Freddolino (Thu Dec 03 2009 - 05:31:58 CST)
- Francesco Pietra (Thu Dec 03 2009 - 02:57:24 CST)
- BIN ZHANG (Wed Dec 02 2009 - 15:17:05 CST)
- BIN ZHANG (Wed Dec 02 2009 - 14:03:58 CST)
- Francesco Pietra (Wed Dec 02 2009 - 12:13:53 CST)
CG Map Tool Syntax Error
- Anton Arkhipov (Wed Nov 05 2008 - 16:16:59 CST)
- Anirban Ghosh (Wed Nov 05 2008 - 04:48:32 CST)
cg_bonds.tcl
- mohammad agha (Sat May 19 2012 - 15:56:00 CDT)
- Ajasja LjubetiÄ (Sat May 19 2012 - 15:07:20 CDT)
- mohammad agha (Sat May 19 2012 - 00:32:37 CDT)
cg_ionize
- Peter Freddolino (Mon Sep 20 2010 - 20:34:08 CDT)
- Sibel Cakan (Sun Sep 19 2010 - 16:37:15 CDT)
CG_MD temperature
- BIN ZHANG (Thu Feb 03 2011 - 01:30:15 CST)
- Sibel Cakan (Wed Feb 02 2011 - 17:56:12 CST)
CGenFF atom types
- Axel Kohlmeyer (Sun Mar 14 2010 - 21:19:30 CDT)
- Ziemys, Arturas (Sun Mar 14 2010 - 19:44:53 CDT)
CGTools error: atom select: cannot parse selection text...
- Kirby Vandivort (Tue Sep 15 2009 - 11:32:35 CDT)
- Kirby Vandivort (Mon Sep 14 2009 - 14:16:24 CDT)
- wuxiao (Mon Sep 14 2009 - 08:48:36 CDT)
CGTools Plugin
- Peter Freddolino (Sat Jan 20 2007 - 11:17:00 CST)
- Ugur Akgun (Fri Jan 19 2007 - 13:59:31 CST)
chain fails
- John Stone (Wed Mar 08 2006 - 16:24:21 CST)
- Yu Chen (Fri Feb 10 2006 - 14:52:43 CST)
change axes name
- John Stone (Tue Feb 19 2008 - 10:59:23 CST)
- massimo camarda (Mon Feb 18 2008 - 11:57:35 CST)
change color from script
- John Stone (Fri Oct 15 2004 - 10:44:47 CDT)
- S.G.Falkovich (Wed Oct 13 2004 - 04:27:06 CDT)
Change Color Scale
- Joshua D. Moore (Wed Dec 21 2011 - 15:49:50 CST)
- Axel Kohlmeyer (Wed Dec 21 2011 - 15:04:07 CST)
- John Stone (Wed Dec 21 2011 - 15:09:09 CST)
- Joshua D. Moore (Wed Dec 21 2011 - 13:57:10 CST)
Change coordinates
- Axel Kohlmeyer (Thu Nov 24 2011 - 14:42:53 CST)
- Andrés Morales (Thu Nov 24 2011 - 10:38:15 CST)
- sajad falsafi (Thu Nov 24 2011 - 06:51:44 CST)
- Andrés Morales (Thu Nov 24 2011 - 02:14:02 CST)
change cylinder surface properties
- Axel Kohlmeyer (Mon Feb 16 2009 - 18:29:11 CST)
- Peter Varnai (Mon Feb 16 2009 - 11:42:13 CST)
change default bond cutoff distance
- John Stone (Wed Mar 15 2006 - 18:35:02 CST)
- Weiqiang Wang (Tue Mar 14 2006 - 02:11:22 CST)
- John Stone (Tue Mar 14 2006 - 00:18:33 CST)
- Weiqiang Wang (Tue Mar 07 2006 - 15:12:42 CST)
- John Stone (Tue Mar 07 2006 - 10:55:23 CST)
- Weiqiang Wang (Tue Mar 07 2006 - 03:25:53 CST)
change default drawing and coloring method
- Axel Kohlmeyer (Thu May 25 2006 - 05:06:12 CDT)
- Habib.Alehossein_at_csiro.au (Wed May 24 2006 - 22:52:36 CDT)
- Jian Zou (Wed May 24 2006 - 20:44:06 CDT)
- John Stone (Wed May 24 2006 - 16:28:51 CDT)
- Jian Zou (Tue May 23 2006 - 22:16:49 CDT)
- John Stone (Tue May 23 2006 - 13:19:13 CDT)
- John Stone (Tue May 23 2006 - 13:05:51 CDT)
- Osmany guirola Cruz (Tue May 23 2006 - 10:10:47 CDT)
- Ch. Fufezan (Tue May 23 2006 - 09:26:52 CDT)
- Axel Kohlmeyer (Mon May 22 2006 - 23:29:51 CDT)
- Christian Fufezan (Mon May 22 2006 - 19:08:17 CDT)
change location of temporay file storage (Win2k
- Dieter Blaas (Tue May 11 2004 - 08:20:31 CDT)
change location of temporay file storage (Win2k)
- dieter blaas (Mon May 10 2004 - 23:59:18 CDT)
- John Stone (Mon Mar 15 2004 - 13:53:02 CST)
- dieter blaas (Thu Mar 11 2004 - 23:55:32 CST)
change of font
- Salvatore Mario Cosseddu (Fri Feb 10 2012 - 09:12:46 CST)
- John Stone (Fri Feb 10 2012 - 09:04:57 CST)
- lecan (Thu Feb 09 2012 - 20:01:17 CST)
Change only the CA coordinates in a pdb file via tcl
- Mert Gür (Mon Jun 14 2010 - 16:24:44 CDT)
- genie lfs (Mon Jun 14 2010 - 15:45:07 CDT)
- John Stone (Mon Jun 14 2010 - 15:12:33 CDT)
- Mert Gür (Mon Jun 14 2010 - 14:26:14 CDT)
Change Path to Povray
- John Stone (Thu Aug 11 2011 - 10:30:15 CDT)
- Moritz Münsterberg (Thu Aug 11 2011 - 03:34:59 CDT)
Change properties of representations - batch mode
- John Stone (Fri Nov 17 2006 - 11:13:05 CST)
- Axel Kohlmeyer (Fri Nov 17 2006 - 10:47:02 CST)
- Peter Freddolino (Fri Nov 17 2006 - 10:38:07 CST)
- nunolf_at_ci.uc.pt (Fri Nov 17 2006 - 09:48:18 CST)
Change representation default from lines to points
- Axel Kohlmeyer (Thu Jun 02 2005 - 10:08:24 CDT)
- Prasad S Garimella (Thu Jun 02 2005 - 09:56:16 CDT)
Change requested in lammps plugin for VMD
- Axel Kohlmeyer (Fri May 15 2009 - 12:32:48 CDT)
- Gopinath Subramanian (Fri May 15 2009 - 11:42:38 CDT)
change residue colors?
- John Stone (Mon Sep 13 2010 - 12:42:33 CDT)
- Fatemesadat Emami (Fri Sep 10 2010 - 14:37:23 CDT)
change residue name and write a trajectory file
- Axel Kohlmeyer (Thu Apr 10 2008 - 18:19:12 CDT)
- L. Michel Espinoza-Fonseca (Thu Apr 10 2008 - 17:02:13 CDT)
change the radius of atoms
- Joaquim Rui Rodrigues (Thu Oct 23 2008 - 05:40:59 CDT)
- Iman Salehinia (Wed Oct 22 2008 - 21:35:36 CDT)
change the representation of certain atoms which pass a geometric criterion during a movie
- Axel Kohlmeyer (Tue Sep 18 2007 - 08:34:29 CDT)
- maria goranovic (Tue Sep 18 2007 - 08:21:45 CDT)
Changing a structure of macromolecule with VMD
- Axel Kohlmeyer (Sun Feb 24 2008 - 11:36:04 CST)
- Peter Freddolino (Sun Feb 24 2008 - 09:27:34 CST)
- fouchni_at_uni-osnabrueck.de (Sun Feb 24 2008 - 08:38:44 CST)
changing atom number in animation
- John Stone (Thu May 15 2003 - 16:21:24 CDT)
- yifat b (Thu May 15 2003 - 05:01:06 CDT)
- John Stone (Mon May 12 2003 - 11:07:32 CDT)
- yifat b (Mon May 12 2003 - 04:50:17 CDT)
Changing atom order in DCD structures?
- Chang, Christopher (Mon Jul 25 2005 - 15:42:45 CDT)
Changing Beta values for each frame of a trajectory..
- Arun Krishnan (Wed Jun 20 2007 - 23:39:21 CDT)
- John Stone (Wed Jun 20 2007 - 22:50:19 CDT)
- Arun Krishnan (Wed Jun 20 2007 - 22:08:17 CDT)
changing bond color
- Ramya Gamini (Tue Jan 06 2009 - 12:27:22 CST)
- Axel Kohlmeyer (Tue Jan 06 2009 - 12:30:19 CST)
- Peter Freddolino (Tue Jan 06 2009 - 11:50:11 CST)
- jfgaff_at_ncsu.edu (Tue Jan 06 2009 - 11:39:20 CST)
changing certain dihedral angles while keeping rest of molecule fixed
- Peter Freddolino (Wed Jun 06 2007 - 10:41:54 CDT)
- Himanshu Khandelia (Wed Jun 06 2007 - 10:02:54 CDT)
- Peter Freddolino (Wed Jun 06 2007 - 09:24:18 CDT)
- Himanshu Khandelia (Wed Jun 06 2007 - 04:37:01 CDT)
Changing color of a given atom
- Axel Kohlmeyer (Wed Oct 13 2004 - 00:52:36 CDT)
- Hess, Bret (Mon Oct 11 2004 - 18:31:03 CDT)
Changing colors
- Axel Kohlmeyer (Mon Nov 28 2005 - 14:56:54 CST)
- ed mendez (Sun Nov 27 2005 - 06:30:51 CST)
changing colours isosurface
- John Stone (Mon Mar 13 2006 - 11:17:08 CST)
- L. Michel Espinoza-Fonseca (Mon Mar 13 2006 - 10:44:23 CST)
changing cpk shere scale in TCL
- John Stone (Wed Oct 05 2005 - 14:47:45 CDT)
- JC Gumbart (Wed Oct 05 2005 - 13:38:59 CDT)
- pascal.baillod_at_epfl.ch (Wed Oct 05 2005 - 12:07:15 CDT)
Changing decimal places in a label?
- John Stone (Thu Feb 04 2010 - 10:48:38 CST)
- Dr. Seth Olsen (Wed Feb 03 2010 - 23:21:12 CST)
changing default colors for resname HIE HID HIP
- Vlad Cojocaru (Mon Oct 30 2006 - 06:45:42 CST)
changing default sec struct colors
- Axel Kohlmeyer (Mon Jan 02 2006 - 16:12:46 CST)
- sheldonp_at_sas.upenn.edu (Mon Jan 02 2006 - 10:18:21 CST)
Changing Default Settings for VMD Main Window
- Axel Kohlmeyer (Thu Jan 19 2006 - 08:02:47 CST)
- Adrian Koh (Thu Jan 19 2006 - 05:08:23 CST)
changing dihedral angles in molefacture
- Peter Freddolino (Mon Nov 05 2007 - 07:11:28 CST)
- Samuel Coulbourn Flores (Mon Nov 05 2007 - 02:42:48 CST)
changing frame
- JC Gumbart (Tue Jan 09 2007 - 23:55:16 CST)
- Myunggi Yi (Tue Jan 09 2007 - 22:15:11 CST)
Changing Graphical Representations
- John Stone (Thu Jan 26 2006 - 14:03:29 CST)
- Axel Kohlmeyer (Wed Jan 25 2006 - 06:53:15 CST)
- Adrian Koh (Wed Jan 25 2006 - 00:15:54 CST)
changing label format with some arithmetic
- Axel Kohlmeyer (Wed Aug 17 2011 - 10:13:09 CDT)
- maria goranovic (Wed Aug 17 2011 - 04:05:19 CDT)
Changing Nvidia driver
- Christian Wohlschlager (Tue Nov 17 2009 - 02:46:23 CST)
changing occupancy for bunch of PDB file
- John Stone (Fri Jul 08 2005 - 13:58:44 CDT)
- Shahid Qamar (Fri Jul 08 2005 - 13:48:44 CDT)
changing origin of rotation (NOT center of mass)
- Michael Daily (Fri Aug 19 2011 - 13:41:06 CDT)
Changing representations on a per-atom per-timestep basis
- Ajasja LjubetiÄ (Tue Jun 28 2011 - 12:48:11 CDT)
- Axel Kohlmeyer (Tue Jun 28 2011 - 12:14:19 CDT)
- J. Nathan Scott (Tue Jun 28 2011 - 11:34:19 CDT)
Changing Text Style
- John Stone (Wed Oct 04 2006 - 00:10:36 CDT)
- Dr. Seth Olsen (Tue Oct 03 2006 - 21:52:35 CDT)
Changing the atom species during animation
- John Stone (Wed Sep 15 2004 - 17:56:07 CDT)
- Oliver Lanning (Wed Sep 08 2004 - 02:59:11 CDT)
changing the color of Sn atom
- Mark Cunningham (Wed May 11 2011 - 09:34:41 CDT)
- Axel Kohlmeyer (Wed May 11 2011 - 08:37:46 CDT)
- Goldsmith, Jacob (Wed May 11 2011 - 08:45:50 CDT)
- beyza bilgic (Wed May 11 2011 - 06:12:50 CDT)
- Beyza Bilgiç (Wed May 11 2011 - 05:24:31 CDT)
changing the color of subset of representation
- John Stone (Wed Mar 15 2006 - 18:59:20 CST)
- Jeffrey Tseng (Wed Mar 15 2006 - 14:54:58 CST)
- John Stone (Wed Mar 15 2006 - 10:09:46 CST)
- John Stone (Wed Mar 15 2006 - 10:05:55 CST)
- Jeffrey Tseng (Wed Mar 15 2006 - 00:03:03 CST)
- John Stone (Tue Mar 14 2006 - 15:34:57 CST)
- Jeffrey Tseng (Tue Mar 14 2006 - 03:18:32 CST)
- John Stone (Tue Mar 14 2006 - 00:39:40 CST)
- Jeffrey Tseng (Mon Mar 13 2006 - 14:12:09 CST)
- John Stone (Mon Mar 13 2006 - 11:41:19 CST)
- Jeffrey Tseng (Sun Mar 12 2006 - 14:52:15 CST)
changing the default representation for the sequence viewer
- John Stone (Mon Oct 31 2005 - 16:25:10 CST)
- Vlad Cojocaru (Mon Oct 31 2005 - 05:20:48 CST)
Changing the display window size in a script
- John Stone (Fri Feb 09 2007 - 03:06:28 CST)
- Ignacio Fernández Galván (Fri Feb 09 2007 - 02:37:02 CST)
Changing the Index values of a molecule (the differenece between gro and pdb files)
- Axel Kohlmeyer (Wed Aug 15 2007 - 12:51:30 CDT)
- Giovanni Bellesia (Wed Aug 15 2007 - 13:32:56 CDT)
- Peter Freddolino (Wed Aug 15 2007 - 12:34:52 CDT)
- Arneh Babakhani (Wed Aug 15 2007 - 13:06:17 CDT)
- Arneh Babakhani (Wed Aug 15 2007 - 12:39:08 CDT)
Changing the label for resname
- John Stone (Mon Aug 09 2004 - 16:06:46 CDT)
- Sunita Patel (Mon Aug 09 2004 - 09:44:03 CDT)
changing the name of a residue
- John Stone (Mon Aug 21 2006 - 10:37:59 CDT)
- L. Michel Espinoza-Fonseca (Mon Aug 21 2006 - 10:23:21 CDT)
changing the order of atom selections / alignment issue
- Leonardo Trabuco (Mon Aug 27 2007 - 11:07:47 CDT)
- Jim Pfaendtner (Mon Aug 27 2007 - 10:58:31 CDT)
- Leonardo Trabuco (Sat Aug 25 2007 - 01:31:45 CDT)
- Jim Pfaendtner (Fri Aug 24 2007 - 17:58:51 CDT)
changing the representation of a vector
- Axel Kohlmeyer (Fri Nov 17 2006 - 11:02:42 CST)
- Peter Freddolino (Fri Nov 17 2006 - 10:36:11 CST)
- L. Michel Espinoza-Fonseca (Fri Nov 17 2006 - 10:09:55 CST)
changing the representation of all loaded molecules
- Elif Ozkirimli (Wed May 26 2004 - 13:32:28 CDT)
- Jim Phillips (Thu May 20 2004 - 15:38:37 CDT)
- Axel Kohlmeyer (Thu May 20 2004 - 13:35:08 CDT)
- John Stone (Thu May 20 2004 - 09:13:35 CDT)
- Elif Ozkirimli (Thu May 20 2004 - 08:55:25 CDT)
- Axel Kohlmeyer (Thu May 20 2004 - 02:34:14 CDT)
- Elif Ozkirimli (Wed May 19 2004 - 14:32:02 CDT)
Changing the rotation and centering matrix of a molecule
- Justin Gullingsrud (Wed Oct 13 2004 - 13:29:24 CDT)
- CHAUMONT Alain (Wed Oct 13 2004 - 10:39:48 CDT)
Changing the Secondary Structure of a Protein
- MIke S (Sun Dec 28 2008 - 01:18:23 CST)
changing the tile angle of a peptide embedded in a membrane
- L. Michel Espinoza-Fonseca (Mon Sep 10 2007 - 13:05:36 CDT)
- John Stone (Mon Sep 10 2007 - 13:09:39 CDT)
- L. Michel Espinoza-Fonseca (Mon Sep 10 2007 - 12:57:13 CDT)
changing the tilt angle of a peptide embedded in a membrane
- L. Michel Espinoza-Fonseca (Mon Sep 10 2007 - 13:08:38 CDT)
Changing the title in the viewer window
- John Stone (Mon Oct 03 2005 - 11:43:03 CDT)
- Palmer, Teresa (Wed Sep 28 2005 - 12:16:55 CDT)
Charge coloring and Stereo hot keys
- John Stone (Mon Aug 19 2002 - 10:29:48 CDT)
- Jill Vickery (Fri Aug 16 2002 - 17:48:55 CDT)
charge information for the PMEpot plugin
- Axel Kohlmeyer (Wed Jun 01 2011 - 12:25:04 CDT)
- Raul Araya (Wed Jun 01 2011 - 11:48:07 CDT)
Charge State Confusion
- MIke S (Fri May 09 2008 - 00:45:39 CDT)
- John Stone (Thu May 08 2008 - 22:55:36 CDT)
- MIke S (Thu May 08 2008 - 22:17:33 CDT)
charge surface area
- Shirley Li (Fri Aug 13 2004 - 11:48:00 CDT)
charge visualization
- Axel Kohlmeyer (Tue Feb 07 2012 - 19:49:17 CST)
- niladri patra (Tue Feb 07 2012 - 18:41:37 CST)
charges in VMD 1.9 vs. VMD 1.8.7
- Axel Kohlmeyer (Fri Feb 10 2012 - 08:38:12 CST)
- Philippe Bopp / temporary (Fri Feb 10 2012 - 07:43:17 CST)
Charlie Buy your loved one Hermes
- Dick Medrano (Thu Sep 27 2007 - 20:39:34 CDT)
Charm force field for POPS lipid
- Jianping Lin (Fri Mar 06 2009 - 15:56:34 CST)
charm27 forcefield_topology
- Falgun Shah (Wed Feb 25 2009 - 11:02:02 CST)
charmm binary ele. pot.
- John Stone (Wed Mar 11 2009 - 14:45:06 CDT)
- John Stone (Wed Mar 11 2009 - 13:55:37 CDT)
- Axel Kohlmeyer (Mon Mar 09 2009 - 13:59:25 CDT)
- Bogdan Costescu (Mon Mar 09 2009 - 13:16:00 CDT)
- Axel Kohlmeyer (Mon Mar 09 2009 - 11:57:21 CDT)
- John Stone (Mon Mar 09 2009 - 09:45:56 CDT)
- Jure Praznikar (Sun Mar 08 2009 - 11:36:47 CDT)
CHARMM CRD files: COR plugin
- John Stone (Tue Dec 16 2003 - 21:02:57 CST)
- Josh Ward (Fri Dec 12 2003 - 14:52:22 CST)
CHARMM electrostatic potential
- ivana adamovic (Thu Feb 01 2007 - 13:17:21 CST)
- John Stone (Thu Feb 01 2007 - 11:16:38 CST)
- ivana adamovic (Thu Feb 01 2007 - 08:28:20 CST)
Charmm expanded coordinate file format?
- John Stone (Mon Dec 26 2005 - 12:02:31 CST)
- Joshua Speidel (Thu Dec 22 2005 - 19:30:51 CST)
CHARMM parameters for Mn 2+ ion
- Daniel Aguayo (Fri Mar 25 2011 - 14:45:15 CDT)
- Jernej Zidar (Fri Mar 25 2011 - 12:57:00 CDT)
- Lisa Brown (Fri Mar 25 2011 - 10:43:45 CDT)
Charmm parameters for Polybutylene terephthalate (PBT)
- Eduardo (Thu Mar 11 2010 - 01:33:56 CST)
- muniyamuthu.raviprasad_at_ndsu.edu (Wed Mar 10 2010 - 13:20:38 CST)
CHARMM TO AMBER FORMAT CONVERT
- Axel Kohlmeyer (Sun Oct 12 2008 - 19:26:18 CDT)
- Semorale (Sun Oct 12 2008 - 18:20:28 CDT)
CHARMM to AMBER trajectory conversion
- Axel Kohlmeyer (Fri Dec 19 2008 - 09:56:01 CST)
- Peter Jones (Thu Dec 18 2008 - 22:40:53 CST)
charmm toppology : internal coordinates
- Arturas Ziemys (Tue Aug 22 2006 - 16:39:00 CDT)
charmm vs amber
- Tommy Wang (Mon Jul 29 2002 - 07:01:07 CDT)
charmmgen to autopsf
- Peter Freddolino (Tue Mar 22 2011 - 08:40:16 CDT)
- Peter Freddolino (Tue Mar 22 2011 - 08:37:16 CDT)
- Francesco Pietra (Tue Mar 22 2011 - 05:32:21 CDT)
- Peter Freddolino (Mon Mar 21 2011 - 19:42:50 CDT)
- Francesco Pietra (Mon Mar 21 2011 - 11:50:13 CDT)
- Peter Freddolino (Mon Mar 21 2011 - 05:48:06 CDT)
- Francesco Pietra (Mon Mar 21 2011 - 05:12:05 CDT)
Cheap 3D Glasses
- John Stone (Tue Apr 24 2007 - 14:26:11 CDT)
- Gustavo Seabra (Mon Apr 23 2007 - 18:07:07 CDT)
Check out my photos on Facebook
- Aneesh Cna (Tue Sep 28 2010 - 04:27:52 CDT)
chime vs vmd
- Peter Schellenberg (Tue Aug 14 2007 - 05:37:55 CDT)
- John Stone (Mon Aug 13 2007 - 11:49:24 CDT)
- Francesco Pietra (Sun Aug 12 2007 - 11:11:05 CDT)
chloroform box
- Axel Kohlmeyer (Sun Aug 05 2007 - 12:35:15 CDT)
- Francesco Pietra (Sun Aug 05 2007 - 02:28:15 CDT)
- Axel Kohlmeyer (Sat Aug 04 2007 - 11:38:10 CDT)
- Peter Freddolino (Sat Aug 04 2007 - 12:04:20 CDT)
- Francesco Pietra (Sat Aug 04 2007 - 09:08:41 CDT)
- Peter Freddolino (Sat Aug 04 2007 - 08:00:48 CDT)
- Francesco Pietra (Sat Aug 04 2007 - 00:52:20 CDT)
Chloroform Solvent Box
- Harindar Keer (Tue Nov 23 2004 - 11:17:45 CST)
Choice of a Linux machine for VMD and high-end computing
- Karsten Suhre (Fri Apr 08 2005 - 07:34:04 CDT)
- Benjamin Goldsteen (Wed Apr 06 2005 - 16:58:07 CDT)
- John Stone (Wed Apr 06 2005 - 16:01:34 CDT)
- Sabuj Pattanayek (Wed Apr 06 2005 - 15:39:19 CDT)
- John Stone (Wed Apr 06 2005 - 11:27:54 CDT)
- Karsten Suhre (Wed Apr 06 2005 - 11:09:58 CDT)
choice of VDW radius
- Axel Kohlmeyer (Fri Apr 30 2010 - 08:34:36 CDT)
- Nicolas Floquet (Fri Apr 30 2010 - 02:43:58 CDT)
Chromium
- Alexander Farley (Sun Sep 08 2002 - 09:44:58 CDT)
- Cesar Delgado (Mon Aug 05 2002 - 16:19:09 CDT)
- John Stone (Mon Aug 05 2002 - 14:33:57 CDT)
- Cesar Delgado (Thu Aug 01 2002 - 16:21:54 CDT)
- John Stone (Thu Aug 01 2002 - 16:15:00 CDT)
- Cesar Delgado (Thu Aug 01 2002 - 16:07:40 CDT)
- John Stone (Thu Aug 01 2002 - 15:48:34 CDT)
- Cesar Delgado (Thu Aug 01 2002 - 15:16:31 CDT)
Cionize
- John Stone (Fri Sep 16 2011 - 13:48:43 CDT)
- Christian Wohlschlager (Thu Sep 15 2011 - 01:12:16 CDT)
- Christian Wohlschlager (Fri Sep 09 2011 - 02:10:28 CDT)
Cionize on mac cuda
- daniel aguayo (Mon Aug 17 2009 - 19:28:30 CDT)
- John Stone (Mon Aug 17 2009 - 13:49:09 CDT)
- daniel aguayo (Tue Aug 11 2009 - 13:16:04 CDT)
- John Stone (Thu Aug 06 2009 - 14:48:09 CDT)
- John Stone (Wed Aug 05 2009 - 20:43:04 CDT)
- daniel aguayo (Wed Aug 05 2009 - 20:46:10 CDT)
- daniel aguayo (Wed Aug 05 2009 - 20:29:07 CDT)
Cionize question for DNA molecule
- Parisa Akhski (Thu Jul 15 2010 - 11:52:54 CDT)
Cl ions
- Justin Gullingsrud (Thu Jan 16 2003 - 23:26:37 CST)
- Ioana Cozmuta (Thu Jan 16 2003 - 21:05:34 CST)
Clarification on solvent box sizing
- Ian Stokes-Rees (Wed Sep 22 2010 - 14:42:30 CDT)
clarification to "problem using pbc wrap"
- politr_at_huji.ac.il (Tue Apr 29 2008 - 06:43:23 CDT)
classify and compute the forces between two atoms
- Axel Kohlmeyer (Mon Feb 25 2008 - 10:08:44 CST)
- ChenFei (Mon Feb 25 2008 - 06:38:58 CST)
Classroom Stereo projection
- Kim, Kwiseon (Wed Oct 19 2005 - 12:30:12 CDT)
- John Stone (Wed Oct 19 2005 - 11:08:29 CDT)
- Kim, Kwiseon (Wed Oct 19 2005 - 11:03:19 CDT)
- John Stone (Mon Oct 17 2005 - 17:24:01 CDT)
- Paul Van Allsburg (Mon Oct 17 2005 - 08:42:01 CDT)
- John Stone (Fri Oct 14 2005 - 15:45:29 CDT)
- Paul Van Allsburg (Thu Oct 13 2005 - 15:16:20 CDT)
Clip
- John Stone (Thu Sep 29 2005 - 00:22:12 CDT)
- Adrian turjanski (Wed Sep 28 2005 - 20:49:04 CDT)
clip plane and cpk / VdW
- Philippe Bopp / temporary (Thu Nov 24 2011 - 09:58:54 CST)
- Pawel Kedzierski (Thu Nov 24 2011 - 02:52:49 CST)
- PaweÅ‚ KÄ™dzierski (Thu Nov 24 2011 - 02:52:32 CST)
- BIN ZHANG (Wed Nov 23 2011 - 11:25:22 CST)
- John Stone (Wed Nov 23 2011 - 09:22:43 CST)
- Philippe Bopp / temporary (Wed Nov 23 2011 - 04:48:33 CST)
Clipping plane tool and export
- John Stone (Wed Dec 07 2005 - 13:17:20 CST)
- Paul D. Jones (Wed Dec 07 2005 - 12:58:40 CST)
clipplane
- John Stone (Fri Oct 14 2005 - 15:58:31 CDT)
- Linda (Wed Oct 12 2005 - 19:10:35 CDT)
cloning a molecule
- Thomas C. Bishop (Mon Nov 05 2007 - 21:27:01 CST)
- Axel Kohlmeyer (Mon Nov 05 2007 - 00:35:27 CST)
- John Stone (Fri Nov 02 2007 - 14:22:26 CDT)
- dimka (Thu Nov 01 2007 - 13:46:44 CDT)
closewater.tcl
- Irene Newhouse (Mon Mar 17 2008 - 18:59:24 CDT)
- Axel Kohlmeyer (Mon Mar 17 2008 - 16:02:02 CDT)
- Irene Newhouse (Mon Mar 17 2008 - 15:50:03 CDT)
- L. Michel Espinoza-Fonseca (Mon Mar 17 2008 - 15:41:14 CDT)
- Irene Newhouse (Mon Mar 17 2008 - 14:48:37 CDT)
Closing filehandles in vmd tcl script
- Justin Gullingsrud (Fri Jan 21 2005 - 01:28:42 CST)
- Ben Roberts (Thu Jan 20 2005 - 21:05:51 CST)
Cluster analysis
- OZGE ENGIN (Tue Feb 05 2008 - 06:29:17 CST)
- Luis Gracia (Mon Jan 07 2008 - 11:22:03 CST)
- Francesco Pietra (Mon Jan 07 2008 - 15:44:15 CST)
- John Stone (Mon Jan 07 2008 - 11:51:34 CST)
- Francesco Pietra (Mon Jan 07 2008 - 12:08:27 CST)
- Francesco Pietra (Mon Jan 07 2008 - 04:35:30 CST)
- John Stone (Mon Jan 07 2008 - 01:59:40 CST)
- Francesco Pietra (Sun Jan 06 2008 - 04:27:19 CST)
Cluster Analysis given a dcd trajectory
- pbrenne1_at_nd.edu (Sun Jan 09 2005 - 13:25:16 CST)
- lug2002_at_med.cornell.edu (Fri Jan 07 2005 - 23:41:14 CST)
- Axel Kohlmeyer (Sat Jan 08 2005 - 13:28:55 CST)
- pbrenne1_at_nd.edu (Fri Jan 07 2005 - 15:58:41 CST)
cluster of particles
- Salvador H-V (Sun Dec 06 2009 - 20:00:39 CST)
Cluster plugin and Gromacs g_cluster
- OZGE ENGIN (Wed Feb 27 2008 - 07:21:15 CST)
Clustering MD trajectories
- Vijay Vammi (Wed Sep 21 2011 - 15:06:13 CDT)
- Kirby Vandivort (Wed Sep 21 2011 - 14:52:54 CDT)
- Vijay Vammi (Mon Sep 19 2011 - 14:33:34 CDT)
- Anurag Sethi (Fri Sep 16 2011 - 17:04:29 CDT)
- John Stone (Fri Sep 16 2011 - 15:02:59 CDT)
- Vijay Vammi (Fri Sep 16 2011 - 15:42:45 CDT)
- Vijay Vammi (Fri Sep 16 2011 - 14:52:47 CDT)
- Vijay Vammi (Fri Sep 16 2011 - 10:39:40 CDT)
- Hurt, Darrell (NIH/NIAID) [E] (Fri Sep 16 2011 - 10:17:54 CDT)
- Vijay Vammi (Fri Sep 16 2011 - 08:13:49 CDT)
Clustering plugin updated to v2.0
- Luis Gracia (Thu May 10 2012 - 12:54:20 CDT)
clusters visualization with colours
- John Stone (Thu Aug 06 2009 - 11:11:17 CDT)
- Stefano Meliga (Thu Aug 06 2009 - 04:43:05 CDT)
CMAP and psfgen
- Justin Gullingsrud (Fri Oct 08 2004 - 14:57:48 CDT)
- Jorge Pikunic (Fri Oct 08 2004 - 12:38:47 CDT)
CMAP problem
- John Stone (Tue Jan 03 2006 - 14:05:32 CST)
- Morad Alawneh (Tue Jan 03 2006 - 13:45:41 CST)
CMYK
- Ignacio Fernández Galván (Wed Oct 31 2007 - 06:28:02 CDT)
- John Stone (Tue Oct 30 2007 - 17:49:30 CDT)
- Adrian Roitberg (Tue Oct 30 2007 - 16:08:37 CDT)
CMYK images
- Samuel Flores (Sat Jul 30 2005 - 16:42:40 CDT)
- Dow Hurst DPHURST (Fri Jul 29 2005 - 19:54:46 CDT)
- Dow Hurst DPHURST (Fri Jul 29 2005 - 19:51:30 CDT)
- John Stone (Fri Jul 29 2005 - 18:21:28 CDT)
- ioana_at_pegasus.arc.nasa.gov (Thu Jul 28 2005 - 21:13:08 CDT)
cns files
- Matthew Wilce (Sun May 21 2000 - 05:28:05 CDT)
CNT Analysis
- Christopher Stiles (Tue Aug 07 2007 - 10:12:13 CDT)
- Axel Kohlmeyer (Tue Aug 07 2007 - 08:54:06 CDT)
- Christopher Stiles (Tue Aug 07 2007 - 08:41:31 CDT)
coarse-grained solvate usage
- Kirby Vandivort (Fri Nov 20 2009 - 12:09:51 CST)
- Francesco Pietra (Fri Nov 20 2009 - 05:12:35 CST)
colomb map in volmap tool
- John Stone (Mon May 28 2007 - 17:17:23 CDT)
- Raul Araya (Mon May 28 2007 - 17:03:10 CDT)
Color a protein based on a property
- John Stone (Fri Aug 10 2007 - 15:09:49 CDT)
- Naresh (Fri Aug 10 2007 - 14:13:42 CDT)
color atom by stress
- John Stone (Sat May 21 2011 - 22:55:46 CDT)
- Shaorui Yang (Sat May 21 2011 - 21:10:17 CDT)
- Axel Kohlmeyer (Sat May 21 2011 - 16:25:18 CDT)
- Shaorui Yang (Sat May 21 2011 - 15:23:48 CDT)
Color bar
- Axel Kohlmeyer (Thu Aug 20 2009 - 17:28:26 CDT)
- Iman Salehinia (Thu Aug 20 2009 - 16:46:36 CDT)
Color bar in VMD
- Dan Wright (Fri Apr 22 2005 - 16:23:36 CDT)
color by charge (can colors be changed?)
- Axel Kohlmeyer (Thu May 25 2006 - 05:02:29 CDT)
- Jeffrey A Tibbitt (Thu May 25 2006 - 01:14:37 CDT)
color by frame?
- John Stone (Mon May 07 2007 - 10:09:23 CDT)
- Axel Kohlmeyer (Mon May 07 2007 - 08:47:16 CDT)
- andrea spitaleri (Mon May 07 2007 - 04:58:40 CDT)
Color by position behavior
- JT (Sun Nov 29 2009 - 08:23:06 CST)
- Axel Kohlmeyer (Sun Nov 29 2009 - 03:47:08 CST)
- JT (Sun Nov 29 2009 - 02:59:31 CST)
color by resid
- John Stone (Thu Apr 25 2002 - 14:02:30 CDT)
- Tran Trung Tran (Tue Apr 23 2002 - 18:28:57 CDT)
- Don Havelberg (Tue Apr 23 2002 - 02:02:23 CDT)
- Tran Trung Tran (Mon Apr 22 2002 - 23:31:52 CDT)
Color by velocity (speed?)
- Axel Kohlmeyer (Wed Jun 16 2010 - 13:01:21 CDT)
- Ardy Davari (Wed Jun 16 2010 - 12:04:04 CDT)
Color by volume
- Peter Freddolino (Sat Sep 30 2006 - 10:41:09 CDT)
- Jay Shore (Fri Sep 29 2006 - 11:54:42 CDT)
Color by Volume on an Intel 945GM
- John Stone (Mon Oct 22 2007 - 10:34:50 CDT)
- Jeffry D Madura (Sat Oct 20 2007 - 16:22:42 CDT)
- Axel Kohlmeyer (Sat Oct 20 2007 - 15:44:39 CDT)
- Jeffry D Madura (Sat Oct 20 2007 - 14:42:07 CDT)
color change on atoms selected using mouse
- Axel Kohlmeyer (Thu Dec 09 2010 - 11:04:44 CST)
- JhonY. I. (Thu Dec 09 2010 - 10:11:35 CST)
color charmm dcd by kinetic energy
- Ardy Davari (Tue Jul 06 2010 - 09:30:27 CDT)
- Bjoern Olausson (Tue Jul 06 2010 - 02:51:24 CDT)
- Axel Kohlmeyer (Mon Jul 05 2010 - 17:02:53 CDT)
- Ardy Davari (Mon Jul 05 2010 - 15:59:22 CDT)
Color code
- Justin Gullingsrud (Thu Mar 20 2003 - 10:29:29 CST)
- Rukman Hertadi (Thu Mar 20 2003 - 01:42:37 CST)
Color error on loading
- John Stone (Wed Mar 03 2004 - 09:58:20 CST)
- Olaf Lenz (Wed Mar 03 2004 - 03:12:02 CST)
- John Stone (Tue Mar 02 2004 - 17:24:45 CST)
- Josh Ward (Tue Mar 02 2004 - 14:30:51 CST)
Color of bond betwen atoms with different colors
- Axel Kohlmeyer (Fri May 16 2008 - 16:35:50 CDT)
- Alberto Torres (Fri May 16 2008 - 15:35:40 CDT)
color problem with Ati Fire GL E1
- Luis Gracia (Fri Mar 05 2004 - 19:46:32 CST)
- Luis Gracia (Fri Mar 05 2004 - 19:50:20 CST)
- Benjamin Goldsteen (Wed Mar 03 2004 - 22:23:31 CST)
- John Stone (Wed Mar 03 2004 - 21:02:04 CST)
- Luis Gracia (Wed Mar 03 2004 - 16:45:19 CST)
Color problem.
- Axel Kohlmeyer (Wed May 13 2009 - 17:45:44 CDT)
- John Stone (Wed May 13 2009 - 16:17:12 CDT)
- knowlesc_at_msu.edu (Wed May 13 2009 - 13:55:31 CDT)
color protein based on an event during a trajectory
- Axel Kohlmeyer (Wed Jun 07 2006 - 23:24:40 CDT)
- Leonardo G. Trabuco (Wed Jun 07 2006 - 22:14:41 CDT)
- Brian Kidd (Wed Jun 07 2006 - 21:33:39 CDT)
Color Scale Data Range
- Weiqiang Wang (Tue May 29 2007 - 17:46:31 CDT)
- Weiqiang Wang (Tue May 29 2007 - 17:08:16 CDT)
- Axel Kohlmeyer (Mon Feb 27 2006 - 08:20:34 CST)
- Vlad Cojocaru (Mon Feb 27 2006 - 05:28:18 CST)
- Vlad Cojocaru (Mon Feb 27 2006 - 05:25:43 CST)
color sidechains differently
- Axel Kohlmeyer (Tue Jun 14 2011 - 22:21:07 CDT)
- Magnus Andersson (Tue Jun 14 2011 - 21:30:10 CDT)
Color surfaces by electrostatic potential
- John Stone (Thu Nov 16 2006 - 17:18:24 CST)
- Mihaly Mezei (Thu Nov 16 2006 - 17:06:06 CST)
color the surface with electrostatic potential value
- Axel Kohlmeyer (Thu Apr 28 2005 - 01:12:24 CDT)
- Michel Espinoza-Fonseca (Wed Apr 27 2005 - 18:02:31 CDT)
- Yongcheng Zhou (Wed Apr 27 2005 - 17:12:29 CDT)
color trajectory using specific values rather than color scale
- Joshua A. Anderson (Mon Jun 27 2011 - 11:50:44 CDT)
- Jérôme Hénin (Mon Jun 27 2011 - 11:20:41 CDT)
- Axel Kohlmeyer (Mon Jun 27 2011 - 10:32:51 CDT)
- John Stone (Mon Jun 27 2011 - 10:42:31 CDT)
- Brian Puchala (Mon Jun 27 2011 - 09:55:05 CDT)
color update for xyz trajectory
- John Stone (Thu Mar 12 2009 - 14:57:03 CDT)
- Tawhid Ezaz (Thu Mar 12 2009 - 14:52:14 CDT)
Color wheel gradient
- jonathan (Fri Mar 25 2011 - 09:03:34 CDT)
- John Stone (Thu Mar 24 2011 - 22:14:38 CDT)
- Jonathan KHAO (Tue Mar 22 2011 - 12:57:08 CDT)
color with name
- Andrew Fenley (Fri Sep 16 2011 - 16:11:17 CDT)
- John Stone (Fri Sep 16 2011 - 13:32:39 CDT)
- Yamei (Fri Sep 16 2011 - 11:56:03 CDT)
color: negative values
- John Stone (Sat Aug 12 2006 - 14:50:14 CDT)
- Zu Thur Yew (Sat Aug 12 2006 - 14:30:37 CDT)
colorid
- John Stone (Wed Dec 07 2005 - 10:17:58 CST)
- Luc Moulinier (Wed Dec 07 2005 - 07:27:35 CST)
coloring according to charge of residues
- Giovanni Bellesia (Mon May 12 2008 - 10:58:45 CDT)
- OZGE ENGIN (Mon May 12 2008 - 10:05:33 CDT)
Coloring atoms based on timeframe range?
- Bjoern Olausson (Fri Apr 23 2010 - 04:01:19 CDT)
- Nicholas Musolino (Thu Apr 22 2010 - 10:53:08 CDT)
- Bjoern Olausson (Thu Apr 22 2010 - 10:41:46 CDT)
- Axel Kohlmeyer (Thu Apr 22 2010 - 10:11:05 CDT)
- Joseph Bylund (Thu Apr 22 2010 - 10:04:08 CDT)
- John Stone (Thu Apr 22 2010 - 10:11:43 CDT)
- Bjoern Olausson (Thu Apr 22 2010 - 08:51:34 CDT)
Coloring atoms by a general scalar
- Heidenreich, Joseph David (Thu Jul 02 2009 - 14:17:25 CDT)
- Axel Kohlmeyer (Wed Jul 01 2009 - 08:12:52 CDT)
- Pawel Kedzierski (Wed Jul 01 2009 - 04:27:32 CDT)
- Axel Kohlmeyer (Tue Jun 30 2009 - 12:53:26 CDT)
- Heidenreich, Joseph David (Tue Jun 30 2009 - 12:19:29 CDT)
Coloring based on POS
- John Stone (Thu Mar 11 2004 - 10:16:19 CST)
- Justin Gullingsrud (Thu Mar 11 2004 - 08:18:16 CST)
- Justin Gullingsrud (Thu Mar 11 2004 - 08:23:31 CST)
- DongHoon Chung (Thu Mar 11 2004 - 03:11:40 CST)
coloring bonds on the same segments differently from those between segments
- lam nguyen (Fri Oct 21 2011 - 17:06:35 CDT)
- Joseph Bylund (Thu Oct 20 2011 - 20:13:59 CDT)
- Axel Kohlmeyer (Thu Oct 20 2011 - 20:10:23 CDT)
- lam nguyen (Thu Oct 20 2011 - 19:07:42 CDT)
coloring by atom type
- Rogan Carr (Sat Apr 18 2009 - 16:53:39 CDT)
- Ryan Pavlovicz (Fri Apr 17 2009 - 15:53:29 CDT)
Coloring by BETA not updating per frame
- David Kingsbury (Sun Jul 24 2005 - 23:39:25 CDT)
- David Kingsbury (Sun Jul 24 2005 - 20:45:47 CDT)
- Axel Kohlmeyer (Sun Jul 24 2005 - 02:29:44 CDT)
- David Kingsbury (Sat Jul 23 2005 - 11:16:09 CDT)
coloring by charge
- John Stone (Wed Oct 29 2003 - 13:46:01 CST)
- suzie.k.hight.1 (Wed Oct 29 2003 - 00:26:42 CST)
coloring by difference in beta factors
- Axel Kohlmeyer (Tue Dec 01 2009 - 07:30:43 CST)
- cubellis_at_unina.it (Tue Dec 01 2009 - 06:25:28 CST)
coloring by gradient
- Rodolfo Pereyra (Thu Apr 28 2011 - 15:36:51 CDT)
Coloring by RMSD during trajectory
- Joseph Bylund (Wed Feb 01 2012 - 23:49:19 CST)
- John Stone (Wed Feb 01 2012 - 23:14:38 CST)
- John Stone (Thu Feb 02 2012 - 00:00:15 CST)
- Joseph Bylund (Fri Jan 06 2012 - 11:40:27 CST)
Coloring by type?
- Akiyama, Jotaro (Fri Nov 12 2004 - 02:45:10 CST)
- John Stone (Thu Nov 11 2004 - 21:51:00 CST)
- Akiyama, Jotaro (Thu Nov 11 2004 - 18:56:02 CST)
- John Stone (Thu Nov 11 2004 - 10:57:55 CST)
- Akiyama, Jotaro (Mon Nov 08 2004 - 03:06:34 CST)
coloring HIE, HIP, HID: sorry ... I got it
- Vlad Cojocaru (Mon Oct 30 2006 - 07:12:12 CST)
coloring method
- John Stone (Tue Dec 06 2005 - 16:40:15 CST)
- Guanglei Cui (Tue Dec 06 2005 - 12:48:55 CST)
- Fei Xu (Thu Feb 28 2002 - 15:44:11 CST)
coloring method User
- John Stone (Mon Mar 22 2004 - 11:45:35 CST)
- Cosmin ROMAN (Mon Mar 22 2004 - 11:56:03 CST)
- John Stone (Mon Mar 22 2004 - 11:18:35 CST)
- Cosmin ROMAN (Sun Mar 21 2004 - 09:05:23 CST)
coloring method)
- John Stone (Fri Mar 01 2002 - 15:01:54 CST)
coloring method: user
- John Stone (Fri Jun 20 2003 - 10:03:15 CDT)
- Jan Saam (Fri Jun 20 2003 - 06:56:26 CDT)
Coloring mols by carbon only
- John Stone (Mon Jul 09 2001 - 10:53:28 CDT)
- Niklas.Blomberg_at_astrazeneca.com (Mon Jul 09 2001 - 04:09:32 CDT)
coloring names
- John Stone (Fri Mar 23 2007 - 14:01:05 CDT)
- Fred Moore (Fri Mar 23 2007 - 13:24:37 CDT)
coloring of an item created by canvas
- Nadja Lederer (Wed Dec 10 2008 - 04:07:51 CST)
Coloring of atoms/molecules
- John Stone (Fri Nov 01 2002 - 21:18:42 CST)
- #WONG CHEE HOW# (Thu Oct 31 2002 - 23:24:13 CST)
coloring of trajectory
- John Stone (Thu Mar 11 2004 - 14:29:47 CST)
- Florian Barth (Thu Mar 11 2004 - 11:56:38 CST)
- John Stone (Wed Mar 10 2004 - 11:19:55 CST)
- Florian Barth (Wed Mar 10 2004 - 07:10:27 CST)
Coloring particular atom with particular index
- Töre Han Balta (Thu Dec 08 2011 - 16:15:26 CST)
- Ajasja LjubetiÄ (Wed Dec 07 2011 - 12:57:42 CST)
- Töre Han Balta (Wed Dec 07 2011 - 11:51:00 CST)
coloring residues with VMD
- John Stone (Wed Nov 29 2006 - 14:55:07 CST)
- christopher (Wed Nov 29 2006 - 14:41:37 CST)
Coloring Sections of Peptides
- Justin Gullingsrud (Wed May 16 2001 - 15:58:26 CDT)
- B. Bennion (Wed May 16 2001 - 15:26:01 CDT)
coloring selected chains and residues
- Axel Kohlmeyer (Mon Jul 30 2007 - 19:00:55 CDT)
- karan uppal (Mon Jul 30 2007 - 18:58:05 CDT)
coloring selection
- John Stone (Mon Apr 26 2004 - 18:27:50 CDT)
- Ioana Cozmuta (Mon Apr 26 2004 - 15:19:25 CDT)
coloring surface by volume
- John Stone (Fri Sep 02 2005 - 17:12:18 CDT)
- Dan Strahs (Fri Aug 26 2005 - 20:05:55 CDT)
coloring trajectory depending on coordination number
- Mgr. Lubos Vrbka (Thu Apr 27 2006 - 05:06:46 CDT)
- Mgr. Lubos Vrbka (Sun Dec 18 2005 - 08:24:02 CST)
- John Stone (Fri Dec 09 2005 - 10:57:18 CST)
- Mgr. Lubos Vrbka (Fri Dec 09 2005 - 10:41:37 CST)
coloring waters
- caldwell_at_heimdal.compchem.ucsf.edu (Fri Jun 20 2003 - 12:06:32 CDT)
- John Stone (Thu Jun 19 2003 - 19:50:02 CDT)
- caldwell_at_heimdal.compchem.ucsf.edu (Thu Jun 19 2003 - 18:25:04 CDT)
- Sanjeev B.S. (Thu Jun 19 2003 - 14:55:14 CDT)
- caldwell_at_heimdal.compchem.ucsf.edu (Thu Jun 19 2003 - 12:51:05 CDT)
coloring way in a volume slice
- John Stone (Fri Mar 11 2005 - 17:17:37 CST)
- John Stone (Sun Mar 06 2005 - 21:36:34 CST)
- YAMAZAKI Takeshi (Fri Mar 04 2005 - 18:26:33 CST)
Coloring with an XYZ file
- John Stone (Wed May 05 2004 - 01:18:01 CDT)
- Axel Kohlmeyer (Wed May 05 2004 - 01:28:00 CDT)
- Edward J. Smiley Jr. (Tue May 04 2004 - 15:25:50 CDT)
coloring.tlc script
- John Stone (Fri Jul 09 2004 - 16:48:29 CDT)
colors
- John Stone (Thu Mar 22 2007 - 10:00:06 CDT)
- Luc Moulinier (Thu Mar 22 2007 - 03:55:26 CDT)
colors changed in animation
- yifat b (Tue Aug 26 2003 - 05:25:18 CDT)
- John Stone (Mon Aug 25 2003 - 10:32:47 CDT)
- yifat b (Mon Aug 25 2003 - 10:00:41 CDT)
colour residues
- Eric H. Lee (Mon Oct 12 2009 - 21:31:18 CDT)
- Leonardo Trabuco (Mon Oct 12 2009 - 18:56:31 CDT)
- Axel Kohlmeyer (Mon Oct 12 2009 - 19:05:13 CDT)
- Eric H. Lee (Mon Oct 12 2009 - 18:26:11 CDT)
- Christine Horejs (Mon Oct 12 2009 - 17:58:31 CDT)
Colouring
- Justin Gullingsrud (Wed Jun 18 2003 - 09:22:42 CDT)
- #WONG CHEE HOW# (Wed Jun 18 2003 - 01:02:39 CDT)
Colouring Atoms according to the centro-symmetric parameter
- Axel Kohlmeyer (Thu Mar 01 2007 - 13:45:36 CST)
- Epiphaniou, Nicholas (Thu Mar 01 2007 - 12:59:00 CST)
Colouring atoms named with the same first letter
- Jennifer Williams (Tue Apr 20 2010 - 10:13:04 CDT)
- John Stone (Fri Apr 16 2010 - 16:42:22 CDT)
- Joshua Anderson (Fri Apr 16 2010 - 12:25:47 CDT)
- Axel Kohlmeyer (Fri Apr 16 2010 - 12:03:24 CDT)
- Joshua Anderson (Fri Apr 16 2010 - 11:09:23 CDT)
- Jennifer Williams (Fri Apr 16 2010 - 08:15:07 CDT)
Combine Drawing Methods - Cartoon and Disulfide Bonds
- Chang, Christopher (Tue Jun 14 2005 - 18:43:48 CDT)
- Paul R Brenner (Tue Jun 14 2005 - 17:00:12 CDT)
combine together two PBD/PSF files
- Dr. Luis Rosales Leon (Wed Nov 07 2007 - 18:50:50 CST)
- Alessio Alexiadis (Wed Nov 07 2007 - 07:38:42 CST)
combine.tcl
- John Stone (Wed Nov 22 2006 - 12:12:14 CST)
- annalisa_at_biotec.tu-dresden.de (Tue Nov 21 2006 - 15:06:50 CST)
combine.tcl error
- Jennifer Brookes (Thu Nov 13 2008 - 04:23:03 CST)
- John Stone (Wed Oct 17 2007 - 22:11:59 CDT)
- Francesco Pietra (Sun Oct 14 2007 - 03:23:23 CDT)
combine.tcl membrane plugin
- Axel Kohlmeyer (Thu Nov 15 2007 - 22:47:21 CST)
- Francesco Pietra (Thu Nov 15 2007 - 09:50:36 CST)
- Peter Freddolino (Thu Nov 15 2007 - 09:44:00 CST)
- Axel Kohlmeyer (Thu Nov 15 2007 - 03:33:31 CST)
- Francesco Pietra (Thu Nov 15 2007 - 03:15:33 CST)
- Axel Kohlmeyer (Wed Nov 14 2007 - 20:40:06 CST)
- Francesco Pietra (Wed Nov 14 2007 - 12:05:12 CST)
Combined "Within" atom selection
- John Stone (Tue Oct 12 2010 - 14:59:44 CDT)
- jonathan (Mon Oct 11 2010 - 11:59:08 CDT)
command args to MSMS in VMD
- John Stone (Tue Nov 05 2002 - 10:27:26 CST)
command for volume slice?
- John Stone (Wed May 11 2011 - 11:02:12 CDT)
- Olaf Lenz (Wed May 11 2011 - 09:11:32 CDT)
- Jennifer Williams (Wed May 11 2011 - 08:16:25 CDT)
Command line argument
- Axel Kohlmeyer (Wed Mar 25 2009 - 10:57:22 CDT)
- Goutham (Wed Mar 25 2009 - 10:12:19 CDT)
command line dcd to trr?
- Axel Kohlmeyer (Fri Jul 06 2007 - 08:26:37 CDT)
- hori koshii (Thu Jul 05 2007 - 20:46:14 CDT)
Command line for thickness parameter
- Cun Zhang (Tue Aug 09 2011 - 07:56:27 CDT)
- Guenegou, Guillaume [ORDFR] (Tue Aug 09 2011 - 06:00:29 CDT)
- Guenegou, Guillaume [ORDFR] (Tue Aug 09 2011 - 03:46:46 CDT)
Command line troubles
- Axel Kohlmeyer (Sat Nov 11 2006 - 17:48:00 CST)
- Pavan Ghatty (Sat Nov 11 2006 - 16:11:46 CST)
Command to change background to gradient
- Axel Kohlmeyer (Fri Nov 30 2007 - 06:15:44 CST)
- TRINH Minh hieu (Fri Nov 30 2007 - 04:55:27 CST)
Compatibility with Orcad (PSpice) ?
- John Stone (Sun Sep 19 2010 - 19:35:12 CDT)
- A. M. Carmen Pérez (Thu Sep 16 2010 - 05:06:29 CDT)
Compilation
- John Stone (Thu May 25 2006 - 14:35:31 CDT)
- John Stone (Thu May 25 2006 - 14:31:03 CDT)
- John Stone (Thu May 25 2006 - 14:24:57 CDT)
- Axel Kohlmeyer (Thu May 25 2006 - 05:20:42 CDT)
- angel (Wed May 24 2006 - 17:44:39 CDT)
compilation error
- John Stone (Fri May 10 2002 - 10:31:05 CDT)
- Todd J. Furlong (Fri May 10 2002 - 10:13:56 CDT)
- Tommy Wang (Fri May 10 2002 - 07:52:24 CDT)
compilation from source: first attempt failed
- Bogdan Costescu (Fri Dec 09 2005 - 10:30:07 CST)
- John Stone (Fri Dec 09 2005 - 09:46:08 CST)
- Vlad Cojocaru (Fri Dec 09 2005 - 08:01:34 CST)
compilation from source: make error message
- John Stone (Mon Dec 12 2005 - 15:36:49 CST)
- Cojocaru,Vlad (Mon Dec 12 2005 - 15:06:08 CST)
- John Stone (Mon Dec 12 2005 - 10:02:59 CST)
- Bogdan Costescu (Mon Dec 12 2005 - 06:04:24 CST)
- Vlad Cojocaru (Mon Dec 12 2005 - 03:59:36 CST)
Compilation issues with tcl.h
- John Stone (Tue Mar 25 2003 - 22:33:02 CST)
- Paul Darwen (Tue Mar 25 2003 - 21:36:27 CST)
compilation of vmd 1.8.7 source
- John Stone (Tue Jul 20 2010 - 10:17:44 CDT)
- Ian Stokes-Rees (Tue Jul 20 2010 - 10:07:45 CDT)
- John Stone (Tue Jul 20 2010 - 09:47:22 CDT)
- Vlad Cojocaru (Tue Jul 20 2010 - 09:22:15 CDT)
compilation problem using vmd1.8 alpha
- John Stone (Thu May 30 2002 - 20:11:30 CDT)
- Tommy Wang (Thu May 30 2002 - 19:52:15 CDT)
Compilation propblem
- John Stone (Mon Jun 19 2006 - 13:19:16 CDT)
- angel (Mon Jun 19 2006 - 12:26:52 CDT)
compilation with python 2.5 and file permissions from the CVS repository
- John Stone (Mon Apr 14 2008 - 10:26:18 CDT)
- Vlad Cojocaru (Mon Apr 14 2008 - 05:43:00 CDT)
- Axel Kohlmeyer (Mon Apr 14 2008 - 05:16:19 CDT)
- Vlad Cojocaru (Mon Apr 14 2008 - 05:16:25 CDT)
- Vlad Cojocaru (Mon Apr 14 2008 - 03:26:35 CDT)
- Axel Kohlmeyer (Sun Apr 13 2008 - 15:00:12 CDT)
- John Stone (Sun Apr 13 2008 - 15:29:57 CDT)
- Cojocaru,Vlad (Sun Apr 13 2008 - 14:50:44 CDT)
- Axel Kohlmeyer (Sun Apr 13 2008 - 12:58:26 CDT)
- Cojocaru,Vlad (Sun Apr 13 2008 - 12:24:52 CDT)
compilation: forgot to say about Python
- Vlad Cojocaru (Fri Dec 09 2005 - 08:06:39 CST)
compile a plugin source code
- dbg (Fri Apr 13 2007 - 06:29:59 CDT)
compile catdcd.c
- Sichun Yang (Fri Apr 23 2004 - 19:06:04 CDT)
- Sichun Yang (Fri Apr 23 2004 - 18:38:56 CDT)
compile error
- Axel Kohlmeyer (Tue May 18 2010 - 06:27:22 CDT)
- Liu Shiyong (Tue May 18 2010 - 04:40:12 CDT)
Compile from Source Crashes 5/11/04
- John Stone (Wed May 12 2004 - 18:41:32 CDT)
- Brian Bennion (Tue May 11 2004 - 16:26:33 CDT)
- Brian Bennion (Tue May 11 2004 - 11:22:20 CDT)
- Stewart Dickson (Tue May 11 2004 - 09:51:09 CDT)
Compile of OpenGL shader vmdsphere failed
- John Stone (Tue May 02 2006 - 10:26:41 CDT)
- Marc Petitmermet (Tue May 02 2006 - 05:45:03 CDT)
compile problem for VMD1.8.6: OpenGLRenderer.C
- Axel Kohlmeyer (Sat Mar 08 2008 - 20:51:50 CST)
- Dan Strahs (Sat Mar 08 2008 - 20:17:23 CST)
compile vmd
- Knut Jørgen Bjuland (Wed Sep 22 2010 - 11:15:13 CDT)
- Cun Zhang (Thu Sep 16 2010 - 20:25:45 CDT)
- Axel Kohlmeyer (Wed Sep 15 2010 - 13:09:28 CDT)
- Knut Jørgen Bjuland (Wed Sep 15 2010 - 11:54:17 CDT)
compile VMD 1.9 with FLTK 1.3
- Axel Kohlmeyer (Mon Nov 21 2011 - 08:37:31 CST)
- Vlad Cojocaru (Mon Nov 21 2011 - 07:45:24 CST)
- Vlad Cojocaru (Mon Nov 21 2011 - 06:37:19 CST)
compile VMD on freebsd 4.8
- brad noyes (Tue Sep 09 2003 - 21:05:44 CDT)
- John Stone (Tue Sep 09 2003 - 19:43:33 CDT)
- brad noyes (Tue Sep 09 2003 - 16:43:10 CDT)
- tscheng_at_ic.sunysb.edu (Fri Jul 25 2003 - 07:56:03 CDT)
- brad noyes (Thu Jul 24 2003 - 17:54:42 CDT)
- tscheng_at_ic.sunysb.edu (Thu Jul 24 2003 - 08:00:42 CDT)
- brad noyes (Wed Jul 23 2003 - 20:59:27 CDT)
- Tsu-Fan Cheng (Wed Jul 23 2003 - 14:43:26 CDT)
- John Stone (Wed Jul 23 2003 - 14:27:04 CDT)
- Tsu-Fan Cheng (Wed Jul 23 2003 - 14:23:12 CDT)
compile windows binary in linux
- Axel Kohlmeyer (Mon Sep 13 2010 - 15:13:13 CDT)
- John Stone (Mon Sep 13 2010 - 14:28:01 CDT)
- CLEMENTS, ROBERT (Mon Sep 13 2010 - 14:17:51 CDT)
Compiled version for MacOSX with non-standard options
- John Stone (Wed Apr 23 2008 - 23:45:05 CDT)
- Marc Baaden (Fri Apr 18 2008 - 14:21:30 CDT)
- John Stone (Fri Apr 18 2008 - 12:55:49 CDT)
- Marc Baaden (Fri Apr 18 2008 - 08:36:25 CDT)
- John Stone (Thu Apr 17 2008 - 13:15:46 CDT)
- Delalande (Thu Apr 17 2008 - 08:37:14 CDT)
Compiling CATDCD and VMD plugins on AIX5.2
- Fiona Reid (Thu Oct 20 2005 - 10:44:32 CDT)
- Fiona Reid (Thu Oct 20 2005 - 04:13:27 CDT)
Compiling Fortran bindings for the VMD molfile plugins
- John Stone (Thu Mar 03 2011 - 13:28:03 CST)
- John Stone (Wed Mar 02 2011 - 12:46:57 CST)
- Susana Tomasio (Wed Mar 02 2011 - 10:14:31 CST)
- John Stone (Wed Mar 02 2011 - 10:07:35 CST)
- Susana Tomasio (Wed Mar 02 2011 - 09:40:13 CST)
- John Stone (Tue Mar 01 2011 - 12:32:51 CST)
- Axel Kohlmeyer (Tue Mar 01 2011 - 12:33:03 CST)
- Susana Tomasio (Tue Mar 01 2011 - 11:50:03 CST)
- Axel Kohlmeyer (Tue Mar 01 2011 - 11:23:36 CST)
- John Stone (Tue Mar 01 2011 - 11:28:30 CST)
- John Stone (Tue Mar 01 2011 - 10:54:55 CST)
- Susana Tomasio (Tue Mar 01 2011 - 10:53:49 CST)
- John Stone (Tue Mar 01 2011 - 10:38:20 CST)
- Susana Tomasio (Tue Mar 01 2011 - 10:34:35 CST)
- John Stone (Tue Mar 01 2011 - 10:24:32 CST)
- Susana Tomasio (Tue Mar 01 2011 - 10:16:18 CST)
Compiling from source on Mac OS X 10.5
- John Stone (Thu Jul 17 2008 - 17:04:38 CDT)
- Axel Kohlmeyer (Fri Jun 27 2008 - 14:23:44 CDT)
- Axel Kohlmeyer (Fri Jun 27 2008 - 13:54:36 CDT)
- Marylou Kunkle (Fri Jun 27 2008 - 13:29:37 CDT)
- Marylou Kunkle (Fri Jun 27 2008 - 11:12:37 CDT)
Compiling NAMD from SRC: Tungsten@NCSA
- John Stone (Fri Sep 10 2004 - 20:16:25 CDT)
- Vani Krishna (Fri Sep 10 2004 - 19:54:55 CDT)
compiling on LINUXAMD64 problem
- Axel Kohlmeyer (Sun Apr 17 2011 - 11:16:56 CDT)
- ZHAO Lina (Sun Apr 17 2011 - 09:20:16 CDT)
- Axel Kohlmeyer (Sun Apr 17 2011 - 08:51:28 CDT)
- Axel Kohlmeyer (Sun Apr 17 2011 - 08:34:54 CDT)
- ZHAO Lina (Sun Apr 17 2011 - 08:45:41 CDT)
- ZHAO Lina (Sun Apr 17 2011 - 08:27:05 CDT)
- Axel Kohlmeyer (Sun Apr 17 2011 - 08:16:45 CDT)
- ZHAO Lina (Sun Apr 17 2011 - 06:50:47 CDT)
- Axel Kohlmeyer (Sun Apr 17 2011 - 03:26:32 CDT)
- ZHAO Lina (Sun Apr 17 2011 - 00:14:59 CDT)
Compiling on Windows
- David Joiner (Wed Mar 30 2011 - 10:04:46 CDT)
- John Stone (Thu Mar 24 2011 - 21:38:45 CDT)
- David Joiner (Wed Mar 23 2011 - 11:14:26 CDT)
- David Joiner (Wed Feb 23 2011 - 20:30:48 CST)
- John Stone (Wed Feb 23 2011 - 10:31:18 CST)
- David Joiner (Wed Feb 23 2011 - 10:20:35 CST)
- David Joiner (Tue Feb 22 2011 - 22:06:24 CST)
- John Stone (Tue Feb 22 2011 - 22:09:56 CST)
- David Joiner (Mon Feb 21 2011 - 21:42:48 CST)
- John Stone (Mon Feb 21 2011 - 21:51:33 CST)
- John Stone (Mon Feb 21 2011 - 21:28:02 CST)
- David Joiner (Mon Feb 21 2011 - 21:09:09 CST)
- David Joiner (Sat Feb 19 2011 - 00:07:25 CST)
- David Joiner (Fri Feb 18 2011 - 22:10:37 CST)
- John Stone (Fri Feb 18 2011 - 22:19:44 CST)
- David Joiner (Fri Feb 18 2011 - 15:29:45 CST)
- John Stone (Fri Feb 18 2011 - 12:29:42 CST)
- David Joiner (Fri Feb 18 2011 - 12:17:38 CST)
- John Stone (Fri Feb 18 2011 - 11:57:33 CST)
- John Stone (Fri Feb 18 2011 - 11:51:14 CST)
- Ajasja LjubetiÄ (Fri Feb 18 2011 - 11:07:59 CST)
- John Stone (Fri Feb 18 2011 - 10:06:44 CST)
- Ajasja LjubetiÄ (Fri Feb 18 2011 - 04:03:41 CST)
- David Joiner (Thu Feb 17 2011 - 19:57:13 CST)
- John Stone (Thu Feb 17 2011 - 14:40:24 CST)
- David Joiner (Thu Feb 17 2011 - 14:12:44 CST)
Compiling plugins without netcdf
- Guido Polles (Wed Jun 01 2011 - 12:59:50 CDT)
- Guido Polles (Wed Jun 01 2011 - 10:09:24 CDT)
- John Stone (Wed Jun 01 2011 - 10:15:46 CDT)
Compiling plugins without netcdf support returns an error.
- Cosseddu, Salvatore (Fri May 13 2011 - 06:41:40 CDT)
- Axel Kohlmeyer (Thu May 12 2011 - 19:40:17 CDT)
- Cosseddu, Salvatore (Thu May 12 2011 - 18:48:11 CDT)
- John Stone (Thu May 12 2011 - 15:58:12 CDT)
- Axel Kohlmeyer (Thu May 12 2011 - 15:56:52 CDT)
- Cosseddu, Salvatore (Thu May 12 2011 - 15:12:32 CDT)
- Cosseddu, Salvatore (Thu May 12 2011 - 13:28:48 CDT)
Compiling problem
- John Stone (Mon Jun 19 2006 - 14:46:57 CDT)
- angel (Mon Jun 19 2006 - 14:23:04 CDT)
- John Stone (Wed Apr 26 2006 - 15:06:11 CDT)
- angel (Wed Apr 26 2006 - 14:59:31 CDT)
- John Stone (Fri Mar 31 2006 - 16:13:07 CST)
- angel (Fri Mar 31 2006 - 15:57:47 CST)
compiling problems
- Justin Gullingsrud (Mon Nov 26 2001 - 13:24:55 CST)
- B. Bennion (Mon Nov 26 2001 - 11:35:50 CST)
Compiling VMD
- John Stone (Thu Jul 29 2004 - 10:49:14 CDT)
- Ryan Golhar (Wed Jul 28 2004 - 21:20:12 CDT)
compiling VMD 1.8.3
- John Stone (Mon May 02 2005 - 09:56:44 CDT)
- Stefano Piana (Mon May 02 2005 - 05:17:34 CDT)
Compiling vmd 1.9 plugins
- John Stone (Wed Oct 26 2011 - 17:03:49 CDT)
- Andrew Jewett (Wed Oct 26 2011 - 16:44:48 CDT)
- Matt Fioravante (Wed Oct 26 2011 - 12:55:22 CDT)
Compiling vmd for ppc linux
- John Stone (Fri Feb 20 2004 - 16:23:33 CST)
- apeyser_at_newssun.med.miami.edu (Fri Feb 20 2004 - 13:46:50 CST)
- apeyser_at_newssun.med.miami.edu (Fri Feb 20 2004 - 13:55:41 CST)
Compiling VMD from source on SDSC Datastar (AIX 5.2)
- Philip Blood (Fri Mar 02 2007 - 18:14:23 CST)
- John Stone (Fri Mar 02 2007 - 17:15:22 CST)
- Philip Blood (Fri Mar 02 2007 - 17:09:25 CST)
compiling vmd from source--will that solve ied issue?
- John Stone (Wed Dec 07 2005 - 10:01:13 CST)
- Vlad Cojocaru (Wed Dec 07 2005 - 09:16:31 CST)
Compiling VMD on IRIX 6.5 redux
- steve_at_beefeater.darkorb.net (Wed Oct 15 2003 - 12:15:07 CDT)
- John Stone (Tue Oct 14 2003 - 15:25:49 CDT)
- steve_at_beefeater.darkorb.net (Thu Oct 09 2003 - 11:24:13 CDT)
compiling VMD on mac
- John Stone (Tue Apr 26 2005 - 17:13:36 CDT)
- John Stone (Tue Apr 26 2005 - 14:25:13 CDT)
- Hirsh Nanda (Tue Apr 26 2005 - 14:17:32 CDT)
- John Stone (Wed Apr 20 2005 - 14:57:42 CDT)
- Michel Espinoza-Fonseca (Wed Apr 20 2005 - 14:53:05 CDT)
- William Sheffler (Wed Apr 20 2005 - 14:32:05 CDT)
Compiling VMD plugins on Windows?
- John Stone (Tue Jan 12 2010 - 10:51:39 CST)
- Olaf Lenz (Fri Jan 08 2010 - 09:20:47 CST)
Compiling VMD under Windows XP
- Ben Chern (Thu Apr 03 2008 - 07:14:22 CDT)
- John Stone (Thu Apr 03 2008 - 00:13:12 CDT)
- Ben Chern (Tue Apr 01 2008 - 20:26:36 CDT)
- Axel Kohlmeyer (Tue Apr 01 2008 - 06:06:22 CDT)
- Ben Chern (Tue Apr 01 2008 - 01:33:34 CDT)
- Ben Chern (Mon Mar 31 2008 - 21:39:41 CDT)
- Axel Kohlmeyer (Mon Mar 31 2008 - 21:47:02 CDT)
- John Stone (Mon Mar 31 2008 - 10:29:59 CDT)
- Ben Chern (Mon Mar 31 2008 - 04:13:38 CDT)
Compiling VMD with full OpenGL
- John Stone (Thu Aug 10 2006 - 17:08:48 CDT)
- Marc Baaden (Thu Aug 10 2006 - 16:35:36 CDT)
- John Stone (Thu Aug 10 2006 - 11:09:35 CDT)
- Marc Baaden (Thu Aug 10 2006 - 07:21:10 CDT)
Compiling VMD-1.8 as a loadable python module
- Justin Gullingsrud (Thu Feb 06 2003 - 10:55:14 CST)
- Lars Bruno Hansen (Thu Feb 06 2003 - 06:15:02 CST)
compiling vmd...
- B. Bennion (Tue Jan 28 2003 - 10:09:33 CST)
- John Stone (Tue Jan 28 2003 - 09:39:36 CST)
- Lubos Vrbka (Tue Jan 28 2003 - 04:54:00 CST)
Compiling VMD: Trouble with DispCmds.C
- Luis Rosales (Tue May 24 2005 - 17:36:32 CDT)
- John Stone (Mon May 23 2005 - 10:04:27 CDT)
- Luis Rosales (Fri May 20 2005 - 22:28:18 CDT)
Compiling without graphics
- Axel Kohlmeyer (Tue Jun 01 2010 - 21:55:58 CDT)
- John Stone (Tue Jun 01 2010 - 22:06:55 CDT)
- Philip Peartree (Tue Jun 01 2010 - 20:31:18 CDT)
compiling/porting vmd
- brad noyes (Fri May 23 2003 - 01:30:18 CDT)
- John Stone (Thu May 22 2003 - 23:03:06 CDT)
- brad noyes (Thu May 22 2003 - 22:23:25 CDT)
complete residues within
- Alberto Perez (Thu Mar 06 2008 - 04:38:02 CST)
- Olaf Lenz (Thu Mar 06 2008 - 03:28:08 CST)
- Leandro Martínez (Thu Mar 06 2008 - 03:06:48 CST)
- jrui_at_ci.uc.pt (Thu Mar 06 2008 - 03:02:28 CST)
- Leandro Martínez (Thu Mar 06 2008 - 02:20:59 CST)
compose pdb
- John Stone (Fri Feb 03 2006 - 12:42:49 CST)
- Osmany Guirola Cruz (Fri Feb 03 2006 - 12:37:47 CST)
Compressed files
- John Stone (Thu Jul 11 2002 - 10:26:13 CDT)
- Stéphane Teletchéa (Thu Jul 11 2002 - 03:17:41 CDT)
compressed trajectory support
- Mgr. Lubos Vrbka (Tue Apr 19 2005 - 01:04:57 CDT)
- Axel Kohlmeyer (Mon Apr 18 2005 - 12:47:01 CDT)
- Mgr. Lubos Vrbka (Mon Apr 18 2005 - 10:48:02 CDT)
- Axel Kohlmeyer (Mon Apr 18 2005 - 10:38:14 CDT)
- Mgr. Lubos Vrbka (Mon Apr 18 2005 - 10:08:41 CDT)
- Bogdan Costescu (Mon Apr 18 2005 - 09:57:14 CDT)
- Mgr. Lubos Vrbka (Mon Apr 18 2005 - 09:46:40 CDT)
- Bogdan Costescu (Mon Apr 18 2005 - 09:20:00 CDT)
- Mgr. Lubos Vrbka (Mon Apr 18 2005 - 07:13:10 CDT)
Compute B-factor from MD run
- Aaron Oakley (Fri Sep 12 2003 - 03:02:42 CDT)
Compute force between two atoms
- Axel Kohlmeyer (Tue Feb 26 2008 - 21:42:48 CST)
- Chen Fei (Tue Feb 26 2008 - 20:28:22 CST)
Compute the angle between a vector and the largest inertia axis
- Axel Kohlmeyer (Tue Jan 30 2007 - 11:16:32 CST)
- Prevost Martine (Tue Jan 30 2007 - 04:15:03 CST)
Computer for 3D visualization
- John Stone (Thu Sep 21 2006 - 05:51:23 CDT)
- Berit Hinnemann (Wed Sep 20 2006 - 04:45:58 CDT)
Computer hangs on trying to launch VMD CUDA
- Axel Kohlmeyer (Tue Jul 05 2011 - 15:08:03 CDT)
- John Stone (Tue Jul 05 2011 - 14:01:24 CDT)
- Francesco Pietra (Mon Jul 04 2011 - 02:19:02 CDT)
Computing angles
- Axel Kohlmeyer (Fri Sep 07 2007 - 17:27:26 CDT)
- jo hanna (Fri Sep 07 2007 - 17:18:33 CDT)
concatenate protein and 2 ligand files
- John Stone (Mon Feb 09 2009 - 15:17:44 CST)
- Thomas Evangelidis (Sat Feb 07 2009 - 11:02:30 CST)
Concerning protein rotation
- John Stone (Mon Sep 08 2008 - 11:25:47 CDT)
- Anneta Tzampazi (Mon Sep 08 2008 - 05:22:40 CDT)
CONECT in pdb files
- John Stone (Mon Jul 05 2004 - 14:16:13 CDT)
- Brian Bennion (Fri Jul 02 2004 - 18:01:58 CDT)
- Travis DePuy (Fri Jul 02 2004 - 14:45:10 CDT)
CONECT Records in .pdb file - bonds not getting plotted
- John Stone (Wed Sep 03 2008 - 14:01:23 CDT)
- Paul T. Bauman (Wed Sep 03 2008 - 11:53:37 CDT)
- Paul T. Bauman (Wed Sep 03 2008 - 10:42:10 CDT)
conect2psf
- Andrew Dalke (Wed Jul 24 2002 - 04:51:04 CDT)
- Eugen Leitl (Wed Jul 24 2002 - 04:14:53 CDT)
- Andrew Dalke (Tue Jul 23 2002 - 23:35:06 CDT)
Confidential
- Ibrahim Dunga (Fri May 14 2004 - 07:37:05 CDT)
Configuration file
- John Stone (Tue Mar 06 2007 - 10:02:47 CST)
- Rita Cassia (Tue Mar 06 2007 - 06:37:47 CST)
- Ioana Cozmuta (Tue Apr 29 2003 - 19:41:47 CDT)
configure do nothing (Linux)
- Juan Alfredo Freites (Wed Mar 31 2004 - 12:04:28 CST)
- Mike McCallum (Wed Mar 31 2004 - 10:44:25 CST)
- Arturas (Wed Mar 31 2004 - 09:22:54 CST)
configure do nothing in Linux (???) - thank you !
- Arturas (Thu Apr 01 2004 - 03:23:39 CST)
configure do nothing in Linux(???)
- Jérôme Hénin (Wed Mar 31 2004 - 11:20:51 CST)
- John Stone (Wed Mar 31 2004 - 10:20:28 CST)
- Arturas (Wed Mar 31 2004 - 09:27:36 CST)
Configure VMD while GROMACS Installation
- Axel Kohlmeyer (Tue Feb 07 2012 - 05:52:22 CST)
- Hitesh Patel (Tue Feb 07 2012 - 03:39:30 CST)
configuring vmd w/ browser on OS X
- John Stone (Mon Aug 11 2003 - 11:22:14 CDT)
- Charles McCallum (Fri Aug 08 2003 - 21:49:16 CDT)
conflict between VMD and Cygwin
- John Stone (Mon Feb 14 2011 - 18:19:52 CST)
- Li, Liwei (Mon Feb 14 2011 - 18:02:00 CST)
conflict between VMD and Netbeans IDE on MacOSX
- John Stone (Tue Jan 12 2010 - 14:13:30 CST)
- Leonardo Trabuco (Thu Jan 07 2010 - 08:02:37 CST)
- Wayne Dawson (Thu Jan 07 2010 - 06:44:52 CST)
- Robert Brunner (Wed Jan 06 2010 - 11:18:11 CST)
- Wayne Dawson (Tue Jan 05 2010 - 21:16:58 CST)
conformational alignment
- Wen Li (Thu Mar 31 2005 - 12:55:27 CST)
- John Stone (Thu Mar 31 2005 - 12:50:53 CST)
- Wen Li (Thu Mar 31 2005 - 12:49:47 CST)
- John Stone (Thu Mar 31 2005 - 12:40:51 CST)
- Wen Li (Thu Mar 31 2005 - 12:26:20 CST)
- Wen Li (Thu Mar 31 2005 - 10:53:10 CST)
- John Stone (Thu Mar 31 2005 - 10:40:42 CST)
- Wen Li (Thu Mar 31 2005 - 10:32:51 CST)
- John Stone (Thu Mar 31 2005 - 10:29:54 CST)
- Wen Li (Thu Mar 31 2005 - 10:24:18 CST)
- John Stone (Wed Mar 30 2005 - 15:30:26 CST)
- Wen Li (Wed Mar 30 2005 - 15:21:26 CST)
conformations of a linker
- Boris Steipe (Fri Oct 31 2008 - 16:39:17 CDT)
- Peter Freddolino (Fri Oct 31 2008 - 14:37:34 CDT)
- Edward Lyman (Fri Oct 31 2008 - 14:07:08 CDT)
Connecting a phantom with NAMD and VMD
- John Stone (Tue Nov 07 2006 - 16:40:45 CST)
- preeda (Mon Nov 06 2006 - 00:39:36 CST)
connectivity in RBCG file(pdb extension)
- ANURAG JHA (Tue Sep 27 2011 - 18:46:20 CDT)
Connectivity lost when loading second pdb
- MW Van der Kamp, School of Chemistry (Tue Oct 03 2006 - 11:31:59 CDT)
- Axel Kohlmeyer (Tue Oct 03 2006 - 08:07:39 CDT)
- MW Van der Kamp, School of Chemistry (Tue Oct 03 2006 - 04:29:20 CDT)
- John Stone (Tue Oct 03 2006 - 00:38:41 CDT)
- MW Van der Kamp, School of Chemistry (Mon Oct 02 2006 - 11:06:33 CDT)
connectivity problem
- Axel Kohlmeyer (Wed Jan 09 2008 - 10:09:35 CST)
- rams rams (Wed Jan 09 2008 - 08:57:48 CST)
Consider fluctuating volume for density
- Axel Kohlmeyer (Thu May 10 2007 - 09:45:04 CDT)
- Philipp Schoen1 (Thu May 10 2007 - 05:16:57 CDT)
console in vmd-1.8.3 amd64 is blank (like white text on white background) so I can't see any output messages
- Pattanayek, Sabuj (Tue Jun 07 2005 - 11:57:52 CDT)
- Alex Vakhrouchev (Tue Jun 07 2005 - 00:09:22 CDT)
- Sabuj Pattanayek (Thu Apr 21 2005 - 17:46:59 CDT)
- John Stone (Thu Apr 21 2005 - 17:37:39 CDT)
- Sabuj Pattanayek (Thu Apr 21 2005 - 17:32:55 CDT)
- John Stone (Thu Apr 21 2005 - 17:22:44 CDT)
- Sabuj Pattanayek (Thu Apr 21 2005 - 17:19:57 CDT)
constant region selection for animation
- John Stone (Thu Jun 25 2009 - 10:03:21 CDT)
- Dan Lussier (Thu Jun 25 2009 - 09:55:00 CDT)
constraints
- Swarna Patra (Thu Jan 20 2005 - 20:49:49 CST)
consultation about metal_enviroment.tcl
- Dong Luo (Wed Dec 22 2010 - 09:45:19 CST)
- ÅÓ´ºÀö (Wed Dec 22 2010 - 03:30:20 CST)
contact between 2 residues
- John Stone (Tue May 30 2006 - 14:27:24 CDT)
- L. Michel Espinoza-Fonseca (Tue May 30 2006 - 14:03:06 CDT)
contact map
- Axel Kohlmeyer (Mon Jul 05 2010 - 11:47:31 CDT)
- leila karami (Mon Jul 05 2010 - 09:46:04 CDT)
- leila karami (Mon Jul 05 2010 - 09:12:47 CDT)
- leila karami (Mon Jul 05 2010 - 08:33:23 CDT)
- Luis Gracia (Wed Jun 01 2005 - 18:13:39 CDT)
- Anuradha Mittal (Wed Jun 01 2005 - 14:56:06 CDT)
contact map (over all frames)
- Peter Freddolino (Fri Apr 13 2007 - 21:25:24 CDT)
- amit dong (Fri Apr 13 2007 - 15:53:24 CDT)
contact map definition
- dimka (Mon Mar 13 2006 - 12:03:18 CST)
- Vlad Cojocaru (Mon Mar 13 2006 - 11:53:22 CST)
- John Stone (Mon Mar 13 2006 - 11:34:02 CST)
- Jindal Shah (Mon Mar 13 2006 - 11:21:20 CST)
contact map for Protein-DNA interaction
- Barry Isralewitz (Mon Jul 12 2010 - 13:50:25 CDT)
- atila petrosian (Mon Jul 12 2010 - 02:19:13 CDT)
- leila karami (Wed Jul 07 2010 - 03:32:51 CDT)
contact map lig-pro
- John Stone (Wed Apr 19 2006 - 17:46:14 CDT)
- andrea spitaleri (Wed Apr 19 2006 - 05:37:23 CDT)
contactmap for RNA
- Samuel Coulbourn Flores èŠ±å±± (Wed Jan 28 2009 - 16:44:43 CST)
contacts and pbc
- Jesper Sørensen (Wed Jul 06 2011 - 03:30:37 CDT)
- John Stone (Tue Jul 05 2011 - 13:59:28 CDT)
- Jesper Sørensen (Sun Jul 03 2011 - 11:30:43 CDT)
- Axel Kohlmeyer (Sun Jul 03 2011 - 11:21:39 CDT)
- Jesper Sørensen (Sun Jul 03 2011 - 08:39:02 CDT)
contour plots
- Alexandre A. Vakhrouchev (Mon Jul 21 2008 - 02:25:51 CDT)
- Subramanian Vaitheeswaran (Thu Jul 10 2008 - 10:02:58 CDT)
- Giovanni Bellesia (Thu Jul 10 2008 - 01:09:36 CDT)
- Peter Freddolino (Thu Jul 10 2008 - 00:27:41 CDT)
- Aaron.Oakley_at_csiro.au (Wed Jul 09 2008 - 22:50:54 CDT)
Contour plots for XYZ format
- Axel Kohlmeyer (Sat Oct 30 2010 - 19:17:46 CDT)
- Wang Xianqiao (Sat Oct 30 2010 - 19:02:25 CDT)
- Axel Kohlmeyer (Sat Oct 30 2010 - 10:56:04 CDT)
- Wang Xianqiao (Fri Oct 29 2010 - 23:47:51 CDT)
Contribution of selected atoms to surface
- Peter Freddolino (Fri May 04 2007 - 10:13:41 CDT)
- Brian Smith (Fri May 04 2007 - 03:12:57 CDT)
control drawing method
- Axel Kohlmeyer (Mon Feb 25 2008 - 14:51:57 CST)
- Myunggi Yi (Mon Feb 25 2008 - 13:26:33 CST)
Control of aminoacid ionization in VMD
- Luis Agullo (LAB) (Thu Nov 05 2009 - 02:24:26 CST)
- L. Michel Espinoza-Fonseca (Tue Nov 03 2009 - 05:24:46 CST)
- Luis Agullo (LAB) (Tue Nov 03 2009 - 04:50:55 CST)
Conversion into POVRay coordinates
- John Stone (Fri Aug 06 2010 - 09:23:02 CDT)
- Nicolas Sapay (Fri Aug 06 2010 - 08:41:47 CDT)
- John Stone (Thu Aug 05 2010 - 17:06:54 CDT)
- Nicolas Sapay (Wed Aug 04 2010 - 04:01:20 CDT)
Conversion of DCD trajectories to AMBER ones ?
- Marek Maly (Mon Jul 05 2010 - 09:07:14 CDT)
- Axel Kohlmeyer (Mon Jul 05 2010 - 05:54:16 CDT)
- Marek Maly (Mon Jul 05 2010 - 05:06:40 CDT)
Conversion of GAMESS Quantum MD trajectory file
- radak004_at_umn.edu (Mon Apr 26 2010 - 16:38:36 CDT)
- Axel Kohlmeyer (Mon Apr 26 2010 - 15:01:16 CDT)
- Diego Javier Alonso de Armiño (Mon Apr 26 2010 - 13:59:49 CDT)
conversion of gromacs trajectory file (xtc) to amber trajectory file (mdcrd)
- Axel Kohlmeyer (Sat Dec 25 2010 - 11:20:06 CST)
- leila karami (Sat Dec 25 2010 - 09:14:57 CST)
Conversion of trajectory files
- Kooser, Ara S (Wed Nov 10 2004 - 10:11:32 CST)
- Ernesto E. Di Iorio (Wed Nov 10 2004 - 04:23:19 CST)
- Adrain Koh (Tue Nov 09 2004 - 21:43:52 CST)
convert .coor to pdb
- Joshua D. Moore (Mon Sep 26 2011 - 09:12:09 CDT)
- Zumot, Elia Nabil (Mon Sep 26 2011 - 08:08:59 CDT)
- Axel Kohlmeyer (Mon Sep 26 2011 - 07:04:11 CDT)
- matziast_at_med.uth.gr (Mon Sep 26 2011 - 06:08:24 CDT)
Convert an ascii matrix to an image
- Jérôme Hénin (Mon Mar 13 2006 - 15:22:11 CST)
- Nuno R. L. Ferreira (Mon Mar 13 2006 - 11:47:04 CST)
- Axel Kohlmeyer (Sat Mar 11 2006 - 16:25:18 CST)
- John Stone (Mon Mar 13 2006 - 10:18:17 CST)
- Jérôme Hénin (Mon Mar 13 2006 - 07:33:11 CST)
- Nicolas Sapay (Mon Mar 13 2006 - 04:34:22 CST)
- Nuno R. L. Ferreira (Sat Mar 11 2006 - 13:05:10 CST)
convert DCD files to GROMACS .XTC format
- John Stone (Tue Aug 31 2004 - 15:11:09 CDT)
- Vani Krishna (Sat Aug 28 2004 - 17:43:11 CDT)
convert PDB file to CRD?
- John Stone (Mon Nov 14 2005 - 11:47:48 CST)
- Wei Chen (Mon Nov 14 2005 - 11:13:18 CST)
- Zhen Qin (Fri Nov 11 2005 - 17:49:21 CST)
convert pdb format to normal pdb format
- Bjoern Olausson (Wed Aug 24 2011 - 06:10:45 CDT)
- hamze rahimi (Wed Aug 24 2011 - 04:48:09 CDT)
convert pdb to psf
- Jim Phillips (Tue Sep 30 2003 - 12:48:26 CDT)
- FOK LO MING (Tue Sep 30 2003 - 03:54:34 CDT)
convert prmtop to psf
- Axel Kohlmeyer (Tue May 17 2011 - 05:56:15 CDT)
- Jorgen Simonsen (Tue May 17 2011 - 04:17:33 CDT)
- Axel Kohlmeyer (Wed Feb 02 2011 - 15:45:16 CST)
- Axel Kohlmeyer (Wed Feb 02 2011 - 09:26:32 CST)
- Wei Huang (Tue Feb 01 2011 - 22:04:07 CST)
- Axel Kohlmeyer (Tue Feb 01 2011 - 17:41:31 CST)
- Wei Huang (Tue Feb 01 2011 - 16:22:28 CST)
- Axel Kohlmeyer (Tue Jun 22 2010 - 14:01:36 CDT)
- John Stone (Tue Jun 22 2010 - 13:58:14 CDT)
- Lai zaizhi (Tue Jun 22 2010 - 11:54:56 CDT)
- Lai zaizhi (Tue Jun 22 2010 - 12:22:16 CDT)
- John Stone (Tue Jun 22 2010 - 11:27:49 CDT)
- George Madalin Giambasu (Mon Jun 21 2010 - 18:09:28 CDT)
- Lai zaizhi (Mon Jun 21 2010 - 17:33:07 CDT)
- Axel Kohlmeyer (Mon Jun 21 2010 - 17:25:22 CDT)
- John Stone (Mon Jun 21 2010 - 16:56:08 CDT)
- Lai zaizhi (Mon Jun 21 2010 - 16:41:37 CDT)
convert tcl to python
- Peter Freddolino (Thu Mar 01 2007 - 09:28:55 CST)
- Per Jr. Greisen (Thu Mar 01 2007 - 05:54:18 CST)
convert THR and SER to the phosphorylated forms
- L. Michel Espinoza-Fonseca (Wed Oct 22 2008 - 04:01:01 CDT)
- bo baker (Tue Oct 21 2008 - 19:06:11 CDT)
convert unformatted delphi phi to formatted
- Jun Cheng (Wed Feb 10 2010 - 10:09:55 CST)
convertind dcd to xyz file
- Thomas Bishop (Mon Dec 05 2011 - 08:54:11 CST)
- Axel Kohlmeyer (Tue Nov 29 2011 - 17:43:05 CST)
- siladitya mukherjee (Tue Nov 29 2011 - 16:39:22 CST)
converting
- John Stone (Wed Dec 04 2002 - 16:16:22 CST)
- Vlad Cojocaru (Wed Dec 04 2002 - 16:04:06 CST)
converting .dx volumetric data to 2D isocontour
- John Stone (Tue Aug 02 2011 - 16:53:16 CDT)
- Raul Araya (Thu Jul 28 2011 - 12:31:37 CDT)
Converting .txt trajectory files to VMD compatible format
- John Stone (Wed Nov 17 2004 - 11:20:27 CST)
- Adrain Koh (Tue Nov 09 2004 - 21:40:18 CST)
- John Stone (Fri Nov 05 2004 - 11:25:08 CST)
- Adrain Koh (Fri Nov 05 2004 - 04:43:40 CST)
converting coarse grained POPC membranes to atomistic representation (AMBER, GAFF)
- Vlad Cojocaru (Thu Aug 18 2011 - 07:06:32 CDT)
Converting Files with VMD
- John Stone (Tue Jan 23 2007 - 17:47:54 CST)
- mr.ibid_at_gmail.com (Sat Jan 20 2007 - 04:33:56 CST)
Converting graphics to a pdb's coord system
- Charles Moad (Thu Apr 14 2005 - 20:08:24 CDT)
- John Stone (Thu Apr 14 2005 - 16:23:19 CDT)
- Charles Moad (Wed Apr 13 2005 - 18:40:54 CDT)
- John Stone (Wed Apr 13 2005 - 17:29:33 CDT)
- Charles Moad (Tue Apr 12 2005 - 08:52:12 CDT)
- Charles Moad (Sun Apr 10 2005 - 19:13:31 CDT)
converting old LAMMPS ASCII dumps
- Dan Lussier (Tue Aug 24 2010 - 12:59:40 CDT)
- Axel Kohlmeyer (Tue Aug 24 2010 - 09:48:26 CDT)
- Dan Lussier (Tue Aug 24 2010 - 09:38:11 CDT)
- Axel Kohlmeyer (Mon Aug 23 2010 - 20:04:32 CDT)
- Dan Lussier (Mon Aug 23 2010 - 19:08:01 CDT)
converting pdb to xtc
- L. Michel Espinoza-Fonseca (Mon Feb 27 2006 - 14:20:04 CST)
- John Stone (Mon Feb 27 2006 - 11:13:22 CST)
- Nuno R. L. Ferreira (Mon Feb 27 2006 - 10:50:16 CST)
- L. Michel Espinoza-Fonseca (Mon Feb 27 2006 - 10:17:42 CST)
Converting tracker coordinates to molecule coordinate for selection
- Dipesh Bhattarai (Fri Feb 12 2010 - 11:57:03 CST)
- John Stone (Fri Feb 12 2010 - 11:32:37 CST)
- Dipesh Bhattarai (Fri Feb 12 2010 - 09:24:58 CST)
- John Stone (Fri Feb 12 2010 - 00:26:09 CST)
- Dipesh Bhattarai (Mon Feb 08 2010 - 10:57:03 CST)
converting trajectory files with catdcd in command line
- Axel Kohlmeyer (Fri Feb 20 2009 - 08:02:38 CST)
- Luciano Costa (Fri Feb 20 2009 - 06:31:00 CST)
convex hull and VMD
- John Stone (Mon Sep 28 1998 - 17:05:51 CDT)
- Andrew Dalke (Mon Sep 28 1998 - 17:31:10 CDT)
coordinate translation
- John Stone (Tue Jun 27 2006 - 16:57:41 CDT)
- ziemys_at_ecr6.ohio-state.edu (Tue Jun 27 2006 - 11:04:28 CDT)
COORDINATES extraction of molecule's centers of mass
- John Stone (Wed Mar 28 2012 - 11:40:54 CDT)
- VladanStefanovic_at_kg.ac.rs (Tue Mar 27 2012 - 01:37:23 CDT)
coordinates of an atom
- John Stone (Tue May 02 2006 - 11:22:37 CDT)
- Axel Kohlmeyer (Tue May 02 2006 - 11:22:22 CDT)
- John Stone (Tue May 02 2006 - 10:13:23 CDT)
- Enzo Vitale (Tue May 02 2006 - 09:39:10 CDT)
coordinates with get command
- John Stone (Sat Aug 25 2007 - 23:04:51 CDT)
- Nuno Loureiro Ferreira (Sat Aug 25 2007 - 23:27:28 CDT)
- Nuno Loureiro Ferreira (Sat Aug 25 2007 - 18:10:02 CDT)
CoordinateTransformation
- Jim Phillips (Sun Sep 03 2006 - 21:59:46 CDT)
- B.D Allen (Sun Sep 03 2006 - 20:38:38 CDT)
- Neelanjana Sengupta (Sun Sep 03 2006 - 15:33:32 CDT)
- Neelanjana Sengupta (Sun Sep 03 2006 - 15:34:48 CDT)
- Neelanjana Sengupta (Sun Sep 03 2006 - 15:29:56 CDT)
Copying a selection
- Axel Kohlmeyer (Mon Mar 22 2004 - 12:56:30 CST)
- Philip Fowler (Mon Mar 22 2004 - 02:42:02 CST)
- Adam Marcus (Mon Mar 22 2004 - 01:04:29 CST)
copying parts of an atomselect selection
- Travis DePuy (Tue May 25 2004 - 07:10:54 CDT)
COR format and first residue
- Chang, Christopher (Tue Sep 27 2005 - 18:31:32 CDT)
COR plugin for SGI
- Josh Ward (Fri Mar 05 2004 - 08:27:57 CST)
core API?
- John Stone (Wed Oct 26 2005 - 14:28:43 CDT)
- Craig Maloney (Wed Oct 26 2005 - 13:46:38 CDT)
core dump
- John Stone (Mon Apr 24 2006 - 03:45:08 CDT)
- Praveen Madala (Mon Apr 24 2006 - 03:14:15 CDT)
core dump when launching vmd1.8a21
- Margaret Cheung (Thu Oct 24 2002 - 21:05:30 CDT)
- John Stone (Thu Oct 24 2002 - 20:36:16 CDT)
- Margaret Cheung (Thu Oct 24 2002 - 20:31:28 CDT)
- B. Bennion (Thu Oct 24 2002 - 20:30:05 CDT)
- John Stone (Thu Oct 24 2002 - 19:55:21 CDT)
- Margaret Cheung (Thu Oct 24 2002 - 19:49:42 CDT)
core when using some features of vmd-xplor
- John Stone (Thu May 06 2004 - 16:45:02 CDT)
- Charles_at_Schwieters.org (Thu May 06 2004 - 16:03:01 CDT)
- Pilar Saiz Vela (Thu May 06 2004 - 13:10:48 CDT)
Correlated motion
- Axel Kohlmeyer (Wed Jun 28 2006 - 14:51:52 CDT)
- Leyla Celik (Wed Jun 28 2006 - 11:19:27 CDT)
correlation
- Axel Kohlmeyer (Sun Mar 08 2009 - 10:33:03 CDT)
- Dawn (Sun Mar 08 2009 - 03:05:49 CDT)
Correlation Functions
- Neelanjana Sengupta (Tue Dec 12 2006 - 14:39:13 CST)
- Juan Diaz (Tue Dec 12 2006 - 14:39:52 CST)
- Juan Diaz (Tue Dec 12 2006 - 13:29:49 CST)
corrigendum: error when solvating a system
- L. Michel Espinoza-Fonseca (Mon Aug 21 2006 - 20:51:54 CDT)
Corrupt cpmd-vmd.pdf File?
- rossi_at_york.cuny.edu (Mon Aug 20 2007 - 20:03:02 CDT)
- Axel Kohlmeyer (Thu Aug 09 2007 - 16:39:02 CDT)
- rossi_at_york.cuny.edu (Fri Aug 03 2007 - 05:46:07 CDT)
- rossi_at_york.cuny.edu (Fri Aug 03 2007 - 05:42:54 CDT)
Could not locate 'dowser' (Program not found message box)
- John Stone (Thu Jan 17 2008 - 10:43:25 CST)
- Stanley, Yemin Shi (Thu Jan 17 2008 - 07:31:22 CST)
could not make avi file
- John Stone (Tue Apr 13 2004 - 13:33:33 CDT)
- Albert Sun (Tue Apr 13 2004 - 10:58:49 CDT)
could not visualize DCD file downloaded from VMD website
- Thomas C. Bishop (Thu Jul 23 2009 - 09:21:20 CDT)
- Yi Shang (Tue Jul 21 2009 - 15:24:30 CDT)
- Yi Shang (Tue Jul 21 2009 - 15:05:51 CDT)
- Yi Shang (Tue Jul 21 2009 - 14:59:04 CDT)
couldn't fork child process: not enough memory
- jrui_at_ci.uc.pt (Fri Feb 22 2008 - 08:41:54 CST)
- Peter Freddolino (Fri Feb 22 2008 - 06:48:23 CST)
- jrui_at_ci.uc.pt (Fri Feb 22 2008 - 05:13:16 CST)
- John Stone (Thu Feb 21 2008 - 15:39:30 CST)
- Axel Kohlmeyer (Thu Feb 21 2008 - 15:28:16 CST)
- jrui_at_ci.uc.pt (Thu Feb 21 2008 - 13:47:06 CST)
Couldn't locate ppmtompeg
- Axel Kohlmeyer (Thu Nov 10 2011 - 15:47:31 CST)
- Magnus Andersson (Thu Nov 10 2011 - 16:03:41 CST)
- Rabab Toubar (Thu Nov 10 2011 - 14:57:58 CST)
couldn't open "c:/multiseq-406080740227.start.domain": invalid argument
- Maurice O'Connell (Thu Feb 21 2008 - 12:30:26 CST)
Couldn't open required GL library
- John Stone (Fri Aug 16 2002 - 15:13:30 CDT)
- John Stone (Fri Aug 16 2002 - 14:40:18 CDT)
- John Stone (Fri Aug 09 2002 - 15:32:33 CDT)
- J. Rui Rodrigues (Thu Aug 08 2002 - 18:48:37 CDT)
count CLA number from different frames
- JC Gumbart (Fri Mar 11 2011 - 20:47:02 CST)
- emiliawu_at_dicp.ac.cn (Sat Mar 12 2011 - 07:16:32 CST)
count variable number of molecules
- John Stone (Wed Mar 07 2007 - 16:45:56 CST)
- Alexandr Isayev (Wed Feb 28 2007 - 14:23:11 CST)
Count waters inside a specified box
- Manish (Wed Sep 07 2011 - 09:19:55 CDT)
- Jérôme Hénin (Wed Sep 07 2011 - 06:18:06 CDT)
- Manish (Tue Sep 06 2011 - 11:11:40 CDT)
counting gas molecules inside the nanotube
- bo liu (Fri Sep 19 2008 - 11:38:19 CDT)
- John Stone (Thu Sep 18 2008 - 12:29:34 CDT)
- Alexander A. Vakhrushev (Thu Sep 18 2008 - 12:11:04 CDT)
- John Stone (Thu Sep 18 2008 - 11:18:43 CDT)
- mishacat_at_udm.ru (Thu Sep 18 2008 - 06:52:51 CDT)
Counting H-bonds from a dcd file
- Axel Kohlmeyer (Tue Aug 29 2006 - 19:16:19 CDT)
- Nitin Bhardwaj (Tue Aug 29 2006 - 18:15:56 CDT)
- Axel Kohlmeyer (Tue Aug 29 2006 - 17:42:56 CDT)
- Nitin Bhardwaj (Tue Aug 29 2006 - 17:06:21 CDT)
Counting number of hydrogen bonds in the representation
- Uday K. Chippada (Wed Sep 15 2004 - 13:21:59 CDT)
- Justin Gullingsrud (Wed Sep 15 2004 - 07:30:39 CDT)
- Ahmet Bakan (Wed Sep 15 2004 - 07:44:29 CDT)
- Ahmet Bakan (Wed Sep 15 2004 - 03:39:56 CDT)
- Uday K. Chippada (Tue Sep 14 2004 - 16:38:20 CDT)
Counting number of water molecules
- Bernardo Sosa Padilla Araujo (Thu Dec 10 2009 - 18:48:20 CST)
- Andrew Dalke (Wed Dec 09 2009 - 17:20:43 CST)
- Axel Kohlmeyer (Wed Dec 09 2009 - 17:32:07 CST)
- Bernardo Sosa Padilla Araujo (Wed Dec 09 2009 - 16:30:13 CST)
counting selected atoms---selection time series
- Jérôme Hénin (Thu Sep 01 2005 - 02:05:32 CDT)
- Axel Kohlmeyer (Thu Sep 01 2005 - 01:16:43 CDT)
- Daniel Barsky (Wed Aug 31 2005 - 12:57:32 CDT)
counting specific atom types
- Axel Kohlmeyer (Tue May 08 2012 - 09:24:20 CDT)
- Ana Celia Vila Verde (Tue May 08 2012 - 09:31:23 CDT)
- winardi, erik (Tue May 08 2012 - 08:37:01 CDT)
covalently bonded atoms
- Axel Kohlmeyer (Mon Oct 12 2009 - 12:41:31 CDT)
- politr_at_huji.ac.il (Mon Oct 12 2009 - 11:11:22 CDT)
CPK Graphical Representation
- Jawahar Neelankatan (Fri Oct 20 2006 - 19:05:49 CDT)
- Alexandr Isayev (Fri Oct 20 2006 - 11:48:40 CDT)
- Axel Kohlmeyer (Fri Oct 20 2006 - 11:48:23 CDT)
- Axel Kohlmeyer (Fri Oct 20 2006 - 10:40:46 CDT)
- Jawahar Neelankatan (Fri Oct 20 2006 - 05:57:20 CDT)
crash on ubuntu linux
- Sabuj Pattanayek (Sun Sep 04 2005 - 13:32:25 CDT)
- Jay McAliley (Sat Sep 03 2005 - 11:41:59 CDT)
CRD problems and CRD to DCD conversion
- Mark Zottola - Contractor (Wed Nov 13 2002 - 16:04:39 CST)
- B. Bennion (Wed Nov 13 2002 - 15:48:57 CST)
- John Stone (Wed Nov 13 2002 - 15:06:39 CST)
- Mark Zottola - Contractor (Wed Nov 13 2002 - 14:59:33 CST)
Create a new color category
- John Stone (Wed Jun 22 2005 - 14:19:38 CDT)
- John Stone (Tue Jun 21 2005 - 15:52:39 CDT)
- Dow Hurst DPHURST (Tue Jun 21 2005 - 12:25:52 CDT)
Create a PSF
- Peter Freddolino (Fri Sep 21 2007 - 07:27:34 CDT)
- Peter Freddolino (Fri Sep 21 2007 - 06:57:23 CDT)
- Èùìáò Åõáããåëéäçò (Fri Sep 21 2007 - 06:12:49 CDT)
- Andrea.Cristiani_at_pharm.unige.ch (Fri Sep 21 2007 - 04:16:37 CDT)
Create atom selection from list of integers
- Claw Isthelaw (Mon Jun 02 2008 - 13:10:12 CDT)
- Joaquim Rui Rodrigues (Mon Jun 02 2008 - 12:10:28 CDT)
- Leonardo Trabuco (Mon Jun 02 2008 - 11:15:58 CDT)
- Leonardo Trabuco (Mon Jun 02 2008 - 11:51:09 CDT)
- Axel Kohlmeyer (Mon Jun 02 2008 - 11:08:16 CDT)
- Claw Isthelaw (Mon Jun 02 2008 - 11:01:49 CDT)
create images in vmd
- Axel Kohlmeyer (Fri Feb 03 2012 - 06:34:53 CST)
- oguz gurbulak (Fri Feb 03 2012 - 06:21:28 CST)
- oguz gurbulak (Fri Feb 03 2012 - 05:34:54 CST)
create movie from multiple frames
- Petrica GASCA (Thu Oct 23 2008 - 08:25:17 CDT)
Create multiple tcl interpreter child instances within VMD to run several scripts at once
- Axel Kohlmeyer (Thu Feb 16 2012 - 12:46:48 CST)
- Salvatore Mario Cosseddu (Thu Feb 16 2012 - 12:04:17 CST)
- John Stone (Thu Feb 16 2012 - 11:52:15 CST)
- Salvatore Mario Cosseddu (Thu Feb 16 2012 - 11:49:55 CST)
- Salvatore Mario Cosseddu (Thu Feb 16 2012 - 11:23:15 CST)
- John Stone (Thu Feb 16 2012 - 11:40:11 CST)
create new colors
- Justin Gullingsrud (Fri Mar 08 2002 - 11:39:58 CST)
- Fei Xu (Thu Mar 07 2002 - 10:49:25 CST)
create new topology file for new molecule
- _at_huji.ac.il (Tue Jan 09 2007 - 10:06:25 CST)
create new topology file for new molecule]
- Peter Freddolino (Wed Jan 10 2007 - 08:51:29 CST)
- Axel Kohlmeyer (Wed Jan 10 2007 - 08:39:17 CST)
- _at_huji.ac.il (Wed Jan 10 2007 - 03:01:50 CST)
- Peter Freddolino (Tue Jan 09 2007 - 11:11:04 CST)
create psf and dcd from pdb
- Peter Freddolino (Tue Aug 14 2007 - 10:56:07 CDT)
- Èùìáò Åõáããåëéäçò (Tue Aug 14 2007 - 10:25:15 CDT)
- Èùìáò Åõáããåëéäçò (Mon Aug 13 2007 - 16:26:27 CDT)
- Peter Freddolino (Mon Aug 13 2007 - 17:35:01 CDT)
create surface of overlapping VdW volume
- Dow Hurst (Sat Jun 11 2011 - 11:08:43 CDT)
- Dow Hurst (Fri Jun 10 2011 - 18:17:50 CDT)
Creating a cuboid box to fit in atoms
- Leandro Martínez (Thu Sep 25 2008 - 14:51:00 CDT)
- Ananyo Bandyopadhyay (Thu Sep 25 2008 - 13:29:15 CDT)
Creating a demo - updating the OpenGL window
- John Stone (Mon Jun 20 2005 - 14:40:54 CDT)
- Palmer, Teresa (Mon Jun 20 2005 - 14:30:22 CDT)
Creating a fragment of the given protein
- JC Gumbart (Mon Sep 19 2011 - 01:56:14 CDT)
- Trung Nguyen Duc (Sun Sep 18 2011 - 11:43:18 CDT)
creating a povray file
- John Stone (Wed Feb 17 2010 - 16:07:16 CST)
- gschlau-cohen_at_berkeley.edu (Wed Feb 17 2010 - 15:56:34 CST)
- gschlau-cohen_at_berkeley.edu (Wed Feb 17 2010 - 10:44:02 CST)
- John Stone (Wed Feb 17 2010 - 10:51:44 CST)
Creating a VMD movie from a Tcl script
- John Stone (Tue Jul 22 2008 - 16:16:15 CDT)
- Axel Kohlmeyer (Tue Jul 22 2008 - 15:59:42 CDT)
- John Stone (Tue Jul 22 2008 - 13:51:41 CDT)
- Axel Kohlmeyer (Mon Jul 21 2008 - 14:13:59 CDT)
- Axel Kohlmeyer (Mon Jul 21 2008 - 14:09:46 CDT)
- Samir Unni (Mon Jul 21 2008 - 15:18:22 CDT)
- John Stone (Mon Jul 21 2008 - 12:46:17 CDT)
- Samir Unni (Mon Jul 21 2008 - 12:22:20 CDT)
- Samir Unni (Mon Jul 21 2008 - 12:16:53 CDT)
- Axel Kohlmeyer (Mon Jul 21 2008 - 12:01:22 CDT)
- John Stone (Mon Jul 21 2008 - 11:44:58 CDT)
- Samir Unni (Mon Jul 21 2008 - 11:35:51 CDT)
- Samir Unni (Mon Jul 21 2008 - 07:57:59 CDT)
- John Stone (Mon Jul 21 2008 - 10:31:28 CDT)
- John Stone (Thu Jul 17 2008 - 21:56:35 CDT)
- Samir Unni (Thu Jul 17 2008 - 21:18:24 CDT)
- John Stone (Thu Jul 17 2008 - 17:02:05 CDT)
- Samir Unni (Wed Jul 16 2008 - 09:32:37 CDT)
creating and appending to DCD in VMD
- Nicholas Musolino (Thu Apr 08 2010 - 17:04:40 CDT)
- Nicholas Musolino (Thu Apr 08 2010 - 15:50:04 CDT)
- John Stone (Thu Apr 08 2010 - 16:18:41 CDT)
Creating AVI movies
- Bjoern Olausson (Mon May 10 2010 - 08:37:58 CDT)
- Axel Kohlmeyer (Mon May 10 2010 - 08:21:13 CDT)
- David Poger (Mon May 10 2010 - 07:28:24 CDT)
Creating bond between two atoms
- Nitin Bhardwaj (Tue Oct 25 2005 - 16:09:00 CDT)
- John Stone (Mon Oct 24 2005 - 17:20:52 CDT)
- Nitin Bhardwaj (Fri Oct 21 2005 - 13:33:00 CDT)
- Sergio Anis (Fri Oct 21 2005 - 13:27:36 CDT)
- John Stone (Fri Oct 21 2005 - 12:32:44 CDT)
- Nitin Bhardwaj (Fri Oct 21 2005 - 12:05:09 CDT)
Creating bonds using VMD
- John Stone (Sun Apr 11 2010 - 23:07:21 CDT)
- Mihir Tungare (Mon Mar 29 2010 - 16:34:21 CDT)
creating chiral molecules
- Ajasja LjubetiÄ (Thu Jul 28 2011 - 05:09:29 CDT)
- Peyman Z.Moghadam (Thu Jul 28 2011 - 04:21:16 CDT)
creating gif animation with povray
- John Stone (Mon Feb 05 2007 - 09:56:28 CST)
- Vlad Cojocaru (Mon Feb 05 2007 - 03:48:54 CST)
- John Stone (Sat Feb 03 2007 - 00:54:16 CST)
- Vlad Cojocaru (Fri Feb 02 2007 - 04:09:12 CST)
Creating length dependent coloured bonds in VMD
- Axel Kohlmeyer (Tue Mar 30 2010 - 15:12:28 CDT)
- Willie Maddox (Tue Mar 30 2010 - 14:17:33 CDT)
creating model helices
- Ajasja LjubetiÄ (Mon Jun 27 2011 - 07:10:23 CDT)
- Neelanjana Sengupta (Mon Jun 27 2011 - 06:31:03 CDT)
creating movie files
- John Stone (Fri Aug 12 2005 - 10:58:16 CDT)
- Jaime Sanchez (Fri Aug 12 2005 - 08:34:15 CDT)
creating nonstandard solvent
- Peter Freddolino (Fri Oct 05 2007 - 10:01:12 CDT)
- Nicolas Belloy (Fri Oct 05 2007 - 09:16:30 CDT)
- lucie huynh (Wed Oct 03 2007 - 07:53:21 CDT)
- Peter Freddolino (Wed Oct 03 2007 - 08:19:30 CDT)
- Leandro Martínez (Wed Oct 03 2007 - 08:35:19 CDT)
- Peter Freddolino (Wed Oct 03 2007 - 08:23:07 CDT)
creating periodic images of an atom
- Mgr. Lubos Vrbka (Mon Jan 23 2006 - 08:22:43 CST)
- John Stone (Fri Jan 20 2006 - 14:39:57 CST)
- Mgr. Lubos Vrbka (Thu Jan 19 2006 - 01:58:15 CST)
- John Stone (Wed Jan 18 2006 - 17:08:27 CST)
- Mgr. Lubos Vrbka (Wed Jan 18 2006 - 08:08:41 CST)
creating psf file
- John Stone (Fri May 27 2011 - 14:37:59 CDT)
- seda demirci (Fri May 27 2011 - 10:13:05 CDT)
- Eduard Schreiner (Sun Sep 19 2010 - 21:39:29 CDT)
- John Stone (Sun Sep 19 2010 - 20:09:03 CDT)
- unni kuttan (Mon Aug 30 2010 - 12:14:15 CDT)
creating psf from pgn
- John Stone (Tue Apr 29 2008 - 16:09:24 CDT)
- S.K. Ghosh (Tue Apr 29 2008 - 13:42:45 CDT)
creating psf with trimethoprim
- Charles Moad (Wed May 11 2005 - 21:38:14 CDT)
creating scripts
- Chang, Christopher (Fri Jun 03 2005 - 17:50:51 CDT)
- Mark A. Hallman (Fri Jun 03 2005 - 16:00:54 CDT)
creating spherical water droplet
- Justin Gullingsrud (Fri Dec 27 2002 - 09:46:09 CST)
- Rukman Hertadi (Thu Dec 26 2002 - 19:41:52 CST)
creating videos where the representation changes throughout
- John Stone (Thu Feb 19 2009 - 23:45:17 CST)
- Brian Kidd (Thu Feb 19 2009 - 23:30:20 CST)
criteria for detecting hydrogen bonds
- Michel Espinoza-Fonseca (Sun Apr 17 2005 - 19:41:29 CDT)
- Amarda Shehu (Sun Apr 17 2005 - 18:14:21 CDT)
cropping the missing residues from other PDB file
- sarah k (Mon Jun 13 2011 - 10:19:05 CDT)
- Joyce Tan (Mon Jun 13 2011 - 09:37:14 CDT)
cross correlation in VMD
- Simon Whitehead (Mon Dec 12 2005 - 12:19:30 CST)
Crosseye stereo image rendering
- John Kerrigan (Tue Feb 01 2005 - 18:20:27 CST)
- Wang, Yangzhou (Tue Feb 01 2005 - 16:43:24 CST)
- John Stone (Tue Feb 01 2005 - 15:32:03 CST)
- Wang, Yangzhou (Tue Feb 01 2005 - 15:06:07 CST)
crystal eyes vmd
- John Stone (Tue Jun 09 2009 - 09:47:17 CDT)
- Thomas Lemmin (Tue Jun 09 2009 - 08:06:30 CDT)
- John Stone (Mon Jun 08 2009 - 09:40:36 CDT)
- Thomas Lemmin (Mon Jun 08 2009 - 09:33:07 CDT)
- Thomas Lemmin (Mon Jun 08 2009 - 08:54:04 CDT)
- John Stone (Mon Jun 08 2009 - 08:43:56 CDT)
- John Stone (Mon Jun 08 2009 - 09:00:54 CDT)
- Thomas Lemmin (Mon Jun 08 2009 - 08:21:48 CDT)
- Thomas Lemmin (Mon Jun 08 2009 - 08:16:22 CDT)
Crystal water
- Axel Kohlmeyer (Thu May 22 2008 - 05:23:24 CDT)
- INPE (Ingrid Viveka Pettersson) (Thu May 22 2008 - 04:32:59 CDT)
crystallographic symmetry tool
- Daniel Barsky (Wed Dec 05 2001 - 19:11:35 CST)
cube file question
- Axel Kohlmeyer (Fri Jan 09 2009 - 08:23:16 CST)
- Jun Cheng (Fri Jan 09 2009 - 05:12:20 CST)
cube file: coordinates rotated
- Axel Kohlmeyer (Thu Feb 22 2007 - 09:07:28 CST)
- Yaser Khan (Wed Feb 21 2007 - 20:05:32 CST)
Cube Files - proportion of the electron density
- Axel Kohlmeyer (Tue Oct 09 2007 - 16:40:25 CDT)
- John Stone (Tue Oct 09 2007 - 14:38:06 CDT)
- Jay Shore (Tue Oct 09 2007 - 14:10:35 CDT)
- Axel Kohlmeyer (Sun Oct 07 2007 - 18:14:00 CDT)
- Jay Shore (Sun Oct 07 2007 - 15:50:40 CDT)
CUBIC box of system
- Axel Kohlmeyer (Thu Jun 03 2004 - 12:44:37 CDT)
- Ran Friedman (Thu Jun 03 2004 - 14:56:23 CDT)
- Axel Kohlmeyer (Thu Jun 03 2004 - 07:22:09 CDT)
- Raghunadha Reddy Burri (Thu Jun 03 2004 - 03:24:54 CDT)
Cuda an a cluster ?
- Christian Wohlschlager (Fri Oct 23 2009 - 00:20:59 CDT)
- John Stone (Thu Oct 22 2009 - 11:04:45 CDT)
- Christian Wohlschlager (Thu Oct 22 2009 - 02:56:18 CDT)
CUDA cores seen by VMD on GT540M
- PaweÅ‚ KÄ™dzierski (Thu Sep 01 2011 - 08:07:26 CDT)
- John Stone (Wed Aug 31 2011 - 10:19:39 CDT)
- Axel Kohlmeyer (Wed Aug 31 2011 - 10:17:39 CDT)
- Pawe³ Kêdzierski (Wed Aug 31 2011 - 09:02:09 CDT)
CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ?
- Joshua A. Anderson (Wed Jan 25 2012 - 14:50:27 CST)
- John Stone (Wed Jan 25 2012 - 09:59:13 CST)
- Axel Kohlmeyer (Thu Jan 19 2012 - 13:55:04 CST)
- Joshua A. Anderson (Thu Jan 19 2012 - 14:02:42 CST)
- John Stone (Thu Jan 19 2012 - 13:07:25 CST)
- Joshua A. Anderson (Thu Jan 19 2012 - 12:47:21 CST)
- John Stone (Fri Jan 13 2012 - 14:52:45 CST)
- John Stone (Thu Jan 12 2012 - 10:48:06 CST)
- Joshua D. Moore (Wed Jan 11 2012 - 19:09:50 CST)
- John Stone (Thu Jan 05 2012 - 15:14:17 CST)
- Joshua D. Moore (Fri Dec 30 2011 - 19:07:05 CST)
- Joshua D. Moore (Fri Dec 30 2011 - 19:30:45 CST)
CUDA issues
- John Stone (Mon Mar 08 2010 - 11:19:00 CST)
- Filippo Federici (Fri Mar 05 2010 - 01:38:40 CST)
- John Stone (Thu Mar 04 2010 - 13:54:49 CST)
- Axel Kohlmeyer (Thu Mar 04 2010 - 13:16:58 CST)
- Filippo Federici Canova (Thu Mar 04 2010 - 11:54:09 CST)
- Filippo Federici (Thu Mar 04 2010 - 10:29:44 CST)
- John Stone (Thu Mar 04 2010 - 10:32:06 CST)
- John Stone (Thu Mar 04 2010 - 08:11:53 CST)
- Filippo Federici (Thu Mar 04 2010 - 01:18:14 CST)
CUDA out of memory
- Ajasja LjubetiÄ (Mon Mar 15 2010 - 04:41:14 CDT)
- John Stone (Mon Mar 15 2010 - 10:20:37 CDT)
- John Stone (Fri Mar 12 2010 - 09:02:19 CST)
- Ajasja LjubetiÄ (Fri Mar 12 2010 - 08:22:40 CST)
CUDA Support
- John Stone (Tue Aug 18 2009 - 01:18:10 CDT)
- Christian Wohlschlager (Tue Aug 18 2009 - 01:06:27 CDT)
- John Stone (Wed Aug 12 2009 - 07:55:30 CDT)
- Christian Wohlschlager (Wed Aug 12 2009 - 03:09:35 CDT)
CUDA-NAMD hangs -- check the Northbridge temp!
- Biff Forbush (Tue Jan 05 2010 - 21:51:51 CST)
Curious about analytical capabilities of VMD
- Bjoern Olausson (Mon Jul 06 2009 - 07:10:37 CDT)
- Axel Kohlmeyer (Fri Jul 03 2009 - 11:04:53 CDT)
- Bjoern Olausson (Wed Jul 01 2009 - 07:19:39 CDT)
- Axel Kohlmeyer (Mon Jun 29 2009 - 08:51:01 CDT)
- Bjoern Olausson (Mon Jun 29 2009 - 05:29:33 CDT)
- Axel Kohlmeyer (Fri Jun 26 2009 - 07:09:06 CDT)
- Bjoern Olausson (Fri Jun 26 2009 - 03:48:05 CDT)
cursor size/shape in pick mode
- Mads Nørregaard-Madsen (Fri May 02 2003 - 12:04:45 CDT)
- John Stone (Thu May 01 2003 - 08:30:57 CDT)
- Mads Nørregaard-Madsen (Thu May 01 2003 - 03:43:32 CDT)
custom db in Multiseq
- Elijah Roberts (Tue May 22 2007 - 16:01:53 CDT)
- John Eargle (Fri May 18 2007 - 14:02:09 CDT)
- Armen Nalian (Fri May 18 2007 - 12:29:41 CDT)
- John Eargle (Fri May 18 2007 - 11:32:51 CDT)
- Armen Nalian (Thu May 17 2007 - 18:48:01 CDT)
Customized radii
- Axel Kohlmeyer (Tue May 22 2007 - 12:56:58 CDT)
- Manali Joshi (Tue May 22 2007 - 13:04:27 CDT)
Customizing vdw radius
- John Stone (Tue Feb 17 2004 - 10:32:22 CST)
- Marcin Krol (Tue Feb 17 2004 - 03:57:21 CST)
Customizing VMD Sessions
- John Stone (Thu Apr 14 2005 - 09:46:01 CDT)
- Axel Kohlmeyer (Thu Apr 14 2005 - 08:45:00 CDT)
- Adrian Koh (Thu Apr 14 2005 - 06:03:41 CDT)
- Olaf Lenz (Thu Apr 14 2005 - 05:39:22 CDT)
- Axel Kohlmeyer (Thu Apr 14 2005 - 05:39:38 CDT)
- Adrian Koh (Thu Apr 14 2005 - 02:49:19 CDT)
Cutting a bond
- Axel Kohlmeyer (Wed May 19 2010 - 14:33:01 CDT)
- Francesco Pietra (Wed May 19 2010 - 13:52:18 CDT)
Cutting a sphere with a specified radius along a trajectory
- Axel Kohlmeyer (Fri Jan 27 2012 - 17:24:23 CST)
- John Stone (Fri Jan 27 2012 - 17:17:43 CST)
- Mustafa Tekpinar (Fri Jan 27 2012 - 16:26:29 CST)
cutting short a DMPC bilayer in VMD
- Jerome Henin (Sat Oct 07 2006 - 11:33:03 CDT)
- Akshay Patny (Thu Oct 05 2006 - 21:23:43 CDT)
CVS access is back online...
- John Stone (Fri Aug 06 2004 - 16:08:41 CDT)
- Jerry Ebalunode (Fri Aug 06 2004 - 06:53:15 CDT)
- John Stone (Fri Aug 06 2004 - 10:12:15 CDT)
cvs plugins do not compile because of errors in the sgsmooth.C
- Cojocaru,Vlad (Tue Mar 31 2009 - 13:40:47 CDT)
- John Stone (Tue Mar 31 2009 - 13:34:05 CDT)
CVS root directory not found
- Jerry Ebalunode (Mon Aug 02 2004 - 10:57:47 CDT)
- John Stone (Mon Aug 02 2004 - 16:10:27 CDT)
cyclic peptides
- Alisha \ (Fri Jul 22 2011 - 13:09:55 CDT)
cylindrical water
- Rukman Hertadi (Fri Jan 24 2003 - 04:22:28 CST)
Cylindrical water box
- Liu, Zhanwu (Fri Jan 03 2003 - 08:49:53 CST)
Data fields in vmd
- Axel Kohlmeyer (Thu Jan 15 2009 - 14:10:26 CST)
- Cesar Luis Avila (Thu Jan 15 2009 - 13:27:14 CST)
- Cesar Luis Avila (Thu Jan 15 2009 - 12:33:09 CST)
- John Stone (Thu Jan 15 2009 - 11:38:22 CST)
- John Stone (Thu Jan 15 2009 - 10:34:56 CST)
- Axel Kohlmeyer (Wed Jan 14 2009 - 14:56:10 CST)
- Cesar Luis Avila (Wed Jan 14 2009 - 15:02:25 CST)
data file extensions
- John Stone (Wed May 24 2006 - 13:04:16 CDT)
- Kurt Smith (Wed May 24 2006 - 11:41:21 CDT)
DCD architecture dependence
- Jason Gans (Mon Dec 08 1997 - 08:58:10 CST)
DCD Based on a parameter
- Axel Kohlmeyer (Thu Aug 26 2010 - 11:11:07 CDT)
- Ajasja LjubetiÄ (Thu Aug 26 2010 - 10:12:42 CDT)
- Pat Yee (Thu Aug 26 2010 - 09:01:51 CDT)
DCD command-line options
- John Stone (Wed Jun 28 2000 - 11:05:34 CDT)
- Timm Essigke (Tue Jun 27 2000 - 11:55:16 CDT)
DCD file
- Yinglong Miao (Fri Mar 07 2008 - 14:43:37 CST)
- Alejandro Ortega (Fri Mar 07 2008 - 12:07:23 CST)
dcd file appears to contain no timesteps
- John Stone (Tue Jan 04 2005 - 10:18:52 CST)
- mashaojie163 (Tue Jan 04 2005 - 02:58:38 CST)
dcd file error
- John Stone (Wed Aug 29 2007 - 00:08:39 CDT)
- dimka (Tue Aug 28 2007 - 17:50:52 CDT)
DCD file format
- Tatyana Kuznetsova (Fri Sep 16 2005 - 05:58:44 CDT)
- John Stone (Thu Sep 15 2005 - 11:07:50 CDT)
- Chang, Christopher (Wed Sep 14 2005 - 14:27:47 CDT)
- Tatyana Kuznetsova (Wed Sep 14 2005 - 09:09:06 CDT)
DCD file format?
- John Stone (Fri Apr 25 2003 - 17:40:04 CDT)
- John Stone (Fri Apr 25 2003 - 16:02:00 CDT)
- Changbong Hyeon (Fri Apr 25 2003 - 15:50:23 CDT)
dcd files generated with catdcd
- Giovanni (Fri Apr 30 2004 - 04:11:00 CDT)
DCD for windows
- John Stone (Mon Mar 12 2007 - 01:15:22 CDT)
- John Stone (Tue Mar 06 2007 - 16:20:27 CST)
- lily jin (Tue Mar 06 2007 - 15:25:40 CST)
dcd format
- Axel Kohlmeyer (Wed Oct 22 2008 - 15:59:08 CDT)
- Leandro Martínez (Wed Oct 22 2008 - 14:41:32 CDT)
- Axel Kohlmeyer (Wed Oct 22 2008 - 14:17:22 CDT)
- Leandro Martínez (Wed Oct 22 2008 - 13:53:20 CDT)
- Axel Kohlmeyer (Wed Oct 22 2008 - 12:49:56 CDT)
- Tibbitt, Jeffrey A. (Wed Oct 22 2008 - 11:56:30 CDT)
- JONATHAN BLACK (Wed Oct 22 2008 - 04:30:19 CDT)
dcd header information missing
- Nichols A. Romero (Sat Mar 31 2007 - 18:11:30 CDT)
- John Stone (Thu Mar 29 2007 - 11:03:17 CDT)
- Nichols A. Romero (Thu Mar 29 2007 - 10:21:31 CDT)
dcd large files, charmm-VMD
- Kos (Wed May 04 2005 - 11:14:22 CDT)
- Kos (Tue Apr 26 2005 - 14:31:51 CDT)
- Axel Kohlmeyer (Fri Apr 22 2005 - 11:53:25 CDT)
- John Stone (Fri Apr 22 2005 - 11:11:45 CDT)
- Bogdan Costescu (Fri Apr 22 2005 - 11:08:13 CDT)
- John Stone (Fri Apr 22 2005 - 11:06:09 CDT)
- Kos (Fri Apr 22 2005 - 11:00:38 CDT)
- Marc Q. Ma (Fri Apr 22 2005 - 10:44:25 CDT)
- Kos (Fri Apr 22 2005 - 10:43:11 CDT)
- John Stone (Fri Apr 22 2005 - 10:34:41 CDT)
- John Stone (Fri Apr 22 2005 - 10:33:21 CDT)
- John Stone (Fri Apr 22 2005 - 10:21:17 CDT)
- Marc Q. Ma (Fri Apr 22 2005 - 09:15:17 CDT)
- Bogdan Costescu (Fri Apr 22 2005 - 08:09:11 CDT)
- Kos (Thu Apr 21 2005 - 20:29:21 CDT)
dcd reading error
- John Stone (Sat Jan 03 2004 - 21:35:03 CST)
- Bogdan Costescu (Sat Jan 03 2004 - 10:07:49 CST)
- Mauricio C. Tripp (Fri Jan 02 2004 - 13:48:06 CST)
- Mauricio C. Tripp (Fri Jan 02 2004 - 13:58:44 CST)
- John Stone (Fri Jan 02 2004 - 14:34:07 CST)
- Mauricio C. Tripp (Fri Jan 02 2004 - 14:27:06 CST)
- John Stone (Fri Jan 02 2004 - 13:05:17 CST)
- Mauricio C. Tripp (Fri Jan 02 2004 - 11:23:08 CST)
dcd reading routines
- John Stone (Fri Aug 10 2007 - 13:15:37 CDT)
- nmichaud_at_jhu.edu (Fri Aug 10 2007 - 13:12:15 CDT)
dcd to coor files
- John Stone (Sat May 15 2004 - 14:08:20 CDT)
- Amit Paliwal (Fri May 14 2004 - 15:18:26 CDT)
DCD to XYZ conversion)
- John Stone (Mon Oct 10 2005 - 14:53:09 CDT)
- Kaihsu Tai (Thu Oct 06 2005 - 05:43:14 CDT)
dcd tools
- Chang, Christopher (Tue Sep 13 2005 - 10:20:35 CDT)
- JC Gumbart (Mon Sep 12 2005 - 21:11:58 CDT)
- dimka (Mon Sep 12 2005 - 20:34:20 CDT)
DCD unit cell data
- Axel Kohlmeyer (Thu Oct 16 2003 - 04:59:29 CDT)
- Ioana Cozmuta (Wed Oct 15 2003 - 16:40:18 CDT)
- Erica Smith (Wed Oct 15 2003 - 15:45:51 CDT)
dcd with fixed atoms
- John Stone (Thu Mar 18 2004 - 19:31:16 CST)
- Bogdan Costescu (Wed Mar 17 2004 - 13:05:14 CST)
- John Stone (Wed Mar 17 2004 - 10:13:00 CST)
- Luis Gracia (Wed Mar 17 2004 - 00:39:28 CST)
DCD write/save with a python script
- David Huggins (Fri Nov 05 2010 - 14:58:18 CDT)
debug
- John Stone (Tue Jul 04 2006 - 22:43:57 CDT)
- Vivek Sharma (Tue Jul 04 2006 - 01:07:20 CDT)
debugging tool for atomselect
- Axel Kohlmeyer (Thu Jun 04 2009 - 17:05:10 CDT)
default colors
- MyLinkka (Fri May 29 2009 - 05:15:26 CDT)
- John Stone (Tue May 26 2009 - 17:03:39 CDT)
- MyLinkka (Tue May 26 2009 - 04:57:50 CDT)
- Axel Kohlmeyer (Mon May 25 2009 - 16:10:47 CDT)
- John Stone (Wed May 20 2009 - 21:11:25 CDT)
- MyLinkka (Wed May 20 2009 - 11:58:57 CDT)
- Axel Kohlmeyer (Wed May 20 2009 - 09:38:40 CDT)
- MyLinkka (Wed May 20 2009 - 07:11:35 CDT)
default directory
- Michel Espinoza-Fonseca (Mon Dec 26 2005 - 10:25:01 CST)
- Li Anbang (Mon Dec 26 2005 - 09:49:39 CST)
Default parameters for image renderers
- John Stone (Sat Jun 08 2002 - 22:24:24 CDT)
- Reinhard Klement (Wed Jun 05 2002 - 04:20:15 CDT)
Default radii and colors
- John Stone (Fri Jul 16 2004 - 10:12:01 CDT)
- Olaf Lenz (Fri Jul 16 2004 - 09:21:03 CDT)
Default representation style in command line
- Axel Kohlmeyer (Fri Apr 13 2012 - 07:21:39 CDT)
- Nuno Sousa Cerqueira (Fri Apr 13 2012 - 07:08:18 CDT)
- Paulo E. Abreu (Fri Apr 13 2012 - 06:10:43 CDT)
Default resource file (.vmdrc)
- John Stone (Mon Sep 13 2004 - 15:59:23 CDT)
- Gustavo Mercier (Mon Sep 13 2004 - 15:41:02 CDT)
Define "color Element" through rgb values
- Roger Nadler (Wed Mar 21 2012 - 12:20:50 CDT)
- John Stone (Wed Mar 21 2012 - 11:34:24 CDT)
- Axel Kohlmeyer (Mon Mar 19 2012 - 12:55:31 CDT)
- Roger Nadler (Mon Mar 19 2012 - 11:47:14 CDT)
define water cavity using atom selection in graphical representations window
- Axel Kohlmeyer (Tue Sep 06 2011 - 09:28:45 CDT)
- Mark Cunningham (Tue Sep 06 2011 - 07:35:23 CDT)
- Axel Kohlmeyer (Tue Sep 06 2011 - 05:11:00 CDT)
- Axel Kohlmeyer (Tue Sep 06 2011 - 05:31:23 CDT)
- Hitesh Patel (Tue Sep 06 2011 - 04:20:35 CDT)
- Filip Persson (Tue Sep 06 2011 - 03:08:20 CDT)
defining bonds
- Axel Kohlmeyer (Thu Feb 21 2008 - 15:17:50 CST)
- Thomas C. Bishop (Thu Feb 21 2008 - 14:47:15 CST)
Defining Bonds in .xyz file format
- Axel Kohlmeyer (Wed Feb 16 2005 - 06:09:46 CST)
- Adrian Koh (Wed Feb 16 2005 - 02:29:09 CST)
Defining graphics colors
- John Stone (Mon Oct 25 2004 - 14:33:57 CDT)
- John Stone (Thu Sep 30 2004 - 14:09:38 CDT)
- hinsen_at_llb.saclay.cea.fr (Thu Sep 30 2004 - 03:34:26 CDT)
- John Stone (Wed Sep 29 2004 - 16:12:24 CDT)
- hinsen_at_llb.saclay.cea.fr (Wed Sep 29 2004 - 16:02:31 CDT)
- Luis Gracia (Wed Sep 29 2004 - 15:11:24 CDT)
- John Stone (Wed Sep 29 2004 - 13:05:16 CDT)
- hinsen_at_llb.saclay.cea.fr (Wed Sep 29 2004 - 11:57:34 CDT)
- John Stone (Wed Sep 29 2004 - 09:55:59 CDT)
- hinsen_at_llb.saclay.cea.fr (Wed Sep 29 2004 - 03:45:18 CDT)
- John Stone (Tue Sep 28 2004 - 12:31:28 CDT)
- hinsen_at_llb.saclay.cea.fr (Tue Sep 28 2004 - 12:15:05 CDT)
defintion of alpha helix in vmd?
- L. Michel Espinoza-Fonseca (Tue Dec 16 2008 - 04:41:47 CST)
- Bernhard Knapp (Tue Dec 16 2008 - 03:30:03 CST)
delatom "no segment..."
- Axel Kohlmeyer (Tue Jan 22 2008 - 05:49:32 CST)
- Lucie Huynh (Tue Jan 22 2008 - 05:10:00 CST)
delatom usage - no such segment?
- Jim Phillips (Mon Dec 17 2007 - 11:50:12 CST)
- Stephen M. Dutz (Sun Dec 09 2007 - 19:05:37 CST)
delete bonds in TIP3P
- John Stone (Wed Jul 31 2002 - 08:12:28 CDT)
- Pascal Bonnet (Wed Jul 31 2002 - 06:52:07 CDT)
delete bonds in TIP3P water model
- Pascal Bonnet (Sat Jul 27 2002 - 05:51:49 CDT)
Delete frames in a script
- Ran Friedman (Wed Jan 31 2007 - 03:33:36 CST)
- Axel Kohlmeyer (Tue Jan 30 2007 - 11:13:14 CST)
- L. Michel Espinoza-Fonseca (Tue Jan 30 2007 - 11:02:41 CST)
- L. Michel Espinoza-Fonseca (Tue Jan 30 2007 - 11:00:41 CST)
- L. Michel Espinoza-Fonseca (Tue Jan 30 2007 - 10:38:22 CST)
- Peter Freddolino (Tue Jan 30 2007 - 10:36:01 CST)
- Ran Friedman (Tue Jan 30 2007 - 10:20:35 CST)
- Ana Celia Araujo Vila Verde (Tue Jan 30 2007 - 10:08:50 CST)
- Ran Friedman (Tue Jan 30 2007 - 06:12:14 CST)
Delete overlapping residues
- Axel Kohlmeyer (Sat Nov 24 2007 - 17:30:22 CST)
- Francesco Pietra (Sat Nov 24 2007 - 10:50:32 CST)
delete residues from trajectory
- Schreiner Eduard (Sun Mar 01 2009 - 01:14:53 CST)
- bo baker (Sat Feb 28 2009 - 23:06:17 CST)
- bo baker (Sat Feb 28 2009 - 03:44:06 CST)
- bo baker (Sat Feb 28 2009 - 03:46:20 CST)
Delete Volume Maps via Script
- John Stone (Tue Mar 06 2007 - 14:47:07 CST)
- Bob Johnson (Wed Feb 28 2007 - 18:36:43 CST)
delete water molecules
- Joshua Adelman (Sat Dec 18 2010 - 09:07:59 CST)
- siddesh southekal (Sat Dec 18 2010 - 08:14:25 CST)
- Joshua Adelman (Fri Dec 17 2010 - 10:31:41 CST)
- Ajasja LjubetiÄ (Fri Dec 17 2010 - 08:29:52 CST)
- siddesh southekal (Fri Dec 17 2010 - 07:18:17 CST)
deleting at vmd console
- John Stone (Thu Feb 15 2007 - 22:39:08 CST)
- Dallas B. Warren (Thu Feb 15 2007 - 22:23:01 CST)
Deleting atomselect selections for proper memory management
- pbrenne1_at_nd.edu (Wed Jan 12 2005 - 13:10:44 CST)
- Justin Gullingsrud (Wed Jan 12 2005 - 11:08:15 CST)
- John Stone (Wed Jan 12 2005 - 10:22:00 CST)
- pbrenne1_at_nd.edu (Wed Jan 12 2005 - 08:56:43 CST)
Deleting bonds based on length
- Arneh Babakhani (Fri Jul 27 2007 - 07:58:41 CDT)
- Olaf Lenz (Fri Jul 27 2007 - 01:28:09 CDT)
- Arneh Babakhani (Thu Jul 26 2007 - 23:41:11 CDT)
Deleting frames / molecules does not free up memory!
- Axel Kohlmeyer (Tue Oct 14 2008 - 11:13:11 CDT)
- Benjamin Bouvier (Tue Oct 14 2008 - 11:34:44 CDT)
- Benjamin Bouvier (Tue Oct 14 2008 - 10:26:55 CDT)
deleting specific residues or atoms
- Axel Kohlmeyer (Tue Feb 03 2009 - 10:55:28 CST)
- maria goranovic (Tue Feb 03 2009 - 09:57:54 CST)
Deleting/modifying specific molecule representations
- John Stone (Fri Jun 18 2010 - 16:20:57 CDT)
- Ajasja LjubetiÄ (Wed Jun 02 2010 - 11:53:00 CDT)
- Bob Johnson (Tue Jun 01 2010 - 11:23:58 CDT)
Delightful repl1ca w4tches at Prest1ge Repl1cas
- Kenton Webster (Tue Aug 28 2007 - 09:33:17 CDT)
Delightsome Cart1er w4tches at Prest1ge Repl1cas
- Carson Cope (Fri Aug 31 2007 - 13:58:34 CDT)
Delphi binary phi map problem
- John Stone (Tue Dec 06 2005 - 17:08:10 CST)
- Mengjuei Hsieh (Mon Dec 05 2005 - 19:59:12 CST)
- John Stone (Mon Dec 05 2005 - 16:22:46 CST)
- Mengjuei Hsieh (Fri Dec 02 2005 - 18:11:30 CST)
- John Stone (Thu Dec 01 2005 - 17:26:20 CST)
- Mengjuei Hsieh (Thu Dec 01 2005 - 17:10:03 CST)
dementi: VMD freezes KDE under Linux Redhat = nVidia problem
- Raik Grunberg (Mon Nov 05 2001 - 15:04:19 CST)
Densities for protein and ligand
- John Stone (Fri Feb 06 2004 - 13:56:17 CST)
- Jim Nettles (Wed Feb 04 2004 - 11:52:31 CST)
density
- Swarna Patra (Sun Apr 10 2005 - 20:25:43 CDT)
Density distribution plots
- Axel Kohlmeyer (Fri Oct 10 2008 - 16:26:20 CDT)
- mahesh naalla (Fri Oct 10 2008 - 15:39:30 CDT)
- Axel Kohlmeyer (Thu Oct 09 2008 - 14:14:57 CDT)
- mahesh naalla (Thu Oct 09 2008 - 13:28:31 CDT)
density profile
- John Stone (Tue Mar 16 2004 - 18:49:27 CST)
- Justin Gullingsrud (Tue Mar 16 2004 - 16:36:08 CST)
- Ekta Khurana (Tue Mar 16 2004 - 14:57:36 CST)
Density Profile in VMD
- Axel Kohlmeyer (Mon Sep 05 2011 - 08:39:31 CDT)
- oguz gurbulak (Mon Sep 05 2011 - 02:37:37 CDT)
density profiles
- Eduardo (Wed Apr 22 2009 - 22:17:42 CDT)
- BIN ZHANG (Wed Apr 22 2009 - 12:25:59 CDT)
- Raul Araya (Wed Apr 22 2009 - 11:24:31 CDT)
Depletion of few atoms
- makkuva Ram vivek (Mon Aug 29 2011 - 22:16:16 CDT)
deposition simulation from lammps
- Axel Kohlmeyer (Thu Jul 26 2007 - 12:53:39 CDT)
- Kathleen Barron (Thu Jul 26 2007 - 11:04:33 CDT)
Depth Cueing and dispdev none
- John Stone (Wed Aug 13 2008 - 09:56:44 CDT)
- Oleg Stroganov (Tue Aug 12 2008 - 18:03:29 CDT)
- John Stone (Mon Aug 11 2008 - 14:13:55 CDT)
- Oleg Stroganov (Thu Aug 07 2008 - 16:10:36 CDT)
desmond plug-in error
- Nuno Sousa Cerqueira (Mon Nov 30 2009 - 18:35:39 CST)
- Justin Gullingsrud (Mon Nov 30 2009 - 16:35:13 CST)
- John Stone (Thu Nov 26 2009 - 14:16:26 CST)
- Nuno Sousa Cerqueira (Thu Nov 26 2009 - 11:53:58 CST)
desmond plugin
- John Stone (Wed Dec 09 2009 - 09:11:33 CST)
- John Stone (Fri Dec 04 2009 - 17:28:31 CST)
- Nuno Sousa Cerqueira (Fri Dec 04 2009 - 15:07:32 CST)
- John Stone (Fri Dec 04 2009 - 13:54:38 CST)
- John Stone (Fri Dec 04 2009 - 10:43:25 CST)
- Nuno Sousa Cerqueira (Thu Dec 03 2009 - 17:43:02 CST)
- Nuno Sousa Cerqueira (Thu Dec 03 2009 - 17:37:51 CST)
Desmond trajectory conversion to dcd format
- dimka (Wed Nov 26 2008 - 17:09:57 CST)
- Dong Xu (Wed Nov 26 2008 - 17:15:25 CST)
- John Stone (Wed Nov 26 2008 - 16:52:42 CST)
- Dong Xu (Wed Nov 26 2008 - 16:24:57 CST)
Desmond Trajectory Files on the fly in VMD
- Axel Kohlmeyer (Tue Mar 13 2012 - 08:56:45 CDT)
- Hitesh Patel (Tue Mar 13 2012 - 05:13:34 CDT)
desmond trajectory plugin
- John Stone (Wed May 04 2011 - 22:36:41 CDT)
- Davide Provasi (Mon May 02 2011 - 10:40:30 CDT)
destroyed molecule
- Peter Freddolino (Sat Nov 21 2009 - 08:59:35 CST)
- sarah k (Sat Nov 21 2009 - 06:57:32 CST)
Details of .psf format
- Paul T. Bauman (Fri Dec 08 2006 - 15:24:48 CST)
- Peter Freddolino (Fri Dec 08 2006 - 15:19:26 CST)
- Marcos Sotomayor (Fri Dec 08 2006 - 14:56:45 CST)
- Paul T. Bauman (Fri Dec 08 2006 - 14:52:09 CST)
determining vdw, elec, and others
- Jan Saam (Thu Feb 17 2005 - 16:00:00 CST)
- Axel Kohlmeyer (Thu Feb 17 2005 - 03:43:21 CST)
- Brian Kidd (Wed Feb 16 2005 - 23:09:12 CST)
developing plugins to vmd in python
- Axel Kohlmeyer (Tue Jul 03 2007 - 09:25:33 CDT)
- shourabh rawat (Tue Jul 03 2007 - 01:12:22 CDT)
Dialboxes
- John Stone (Mon Jul 23 2001 - 10:00:55 CDT)
- John Stone (Sun Jul 22 2001 - 23:58:19 CDT)
- Craig Morton (Sun Jul 22 2001 - 21:36:49 CDT)
dict command
- John Stone (Thu Apr 06 2006 - 09:55:36 CDT)
- andrea spitaleri (Thu Apr 06 2006 - 02:43:21 CDT)
- John Stone (Wed Apr 05 2006 - 10:11:08 CDT)
- andrea spitaleri (Wed Apr 05 2006 - 09:44:50 CDT)
difference for solvating a protein in long box suing or not using Molecule Dimensions
- Shulin Zhuang (Sun Nov 25 2007 - 16:43:40 CST)
different colors
- Luca UvA (Thu Feb 06 2003 - 05:04:21 CST)
- John Stone (Tue Feb 04 2003 - 10:01:19 CST)
- Luca UvA (Tue Feb 04 2003 - 04:50:40 CST)
different number of atoms in different frames of a trajectory
- John Stone (Mon Sep 04 2006 - 22:46:01 CDT)
- Enzo Vitale (Mon Sep 04 2006 - 11:09:33 CDT)
different number of atoms in each frame of the trajectory file
- Axel Kohlmeyer (Fri Jul 29 2011 - 18:05:32 CDT)
- Debasis Sengupta (Fri Jul 29 2011 - 16:58:34 CDT)
Different number of atoms trajectory frames
- John Stone (Thu Dec 11 2003 - 10:41:34 CST)
- John Stone (Thu Dec 11 2003 - 10:12:35 CST)
- Manuel Melle-Franco (Thu Dec 11 2003 - 05:14:04 CST)
different numbers of frames even though...
- Axel Kohlmeyer (Fri Mar 14 2008 - 13:05:03 CDT)
- Christopher Stiles (Fri Mar 14 2008 - 10:59:50 CDT)
- Axel Kohlmeyer (Fri Mar 14 2008 - 09:49:00 CDT)
- Christopher Stiles (Fri Mar 14 2008 - 01:49:53 CDT)
differentiating solvent molecules......
- JC Gumbart (Tue Oct 17 2006 - 12:59:21 CDT)
- John Stone (Tue Oct 17 2006 - 12:57:41 CDT)
- bertrand russell (Tue Oct 17 2006 - 12:44:28 CDT)
difficulties referencing a variable within a namespace
- Peter Freddolino (Mon Dec 22 2008 - 14:04:35 CST)
- Thomas Evangelidis (Sun Dec 21 2008 - 21:00:38 CST)
Difficulties using Crystal Eyes 3
- Christian Simon (Mon Dec 06 2004 - 10:20:59 CST)
- Jim Nettles (Thu Dec 02 2004 - 14:09:58 CST)
- John Stone (Thu Dec 02 2004 - 12:54:23 CST)
- John Stone (Thu Dec 02 2004 - 09:51:12 CST)
- Christian Simon (Thu Dec 02 2004 - 09:00:05 CST)
difficulties with starting vmd
- root (Sat Nov 29 1997 - 07:38:28 CST)
difficulties with starting vmd (fwd)
- root (Mon Dec 01 1997 - 09:25:02 CST)
difficulty in installing VMD on linux.
- John Stone (Fri Sep 19 2008 - 15:11:32 CDT)
- Deepti Mishra (Fri Sep 19 2008 - 05:47:18 CDT)
diffusion coefficient
- Ivan Degtyarenko (Fri Dec 08 2006 - 05:44:58 CST)
- Nicolas Floquet (Fri Dec 08 2006 - 04:24:27 CST)
- Nicolas Floquet (Fri Dec 08 2006 - 04:21:48 CST)
diffusion coefficient from rmsd
- Rudra Banerjee (Wed Aug 27 2008 - 21:55:28 CDT)
diffusion coefficient plug-in in VMD
- Ana Celia Vila Verde (Tue May 08 2012 - 11:17:41 CDT)
- fariba taghavi (Tue May 08 2012 - 09:14:54 CDT)
- Axel Kohlmeyer (Tue May 08 2012 - 08:12:35 CDT)
- fariba taghavi (Tue May 08 2012 - 07:06:31 CDT)
Diffusion Constant
- Axel Kohlmeyer (Wed Mar 19 2008 - 06:09:56 CDT)
- Massimo Lai (Wed Mar 19 2008 - 06:09:44 CDT)
- Axel Kohlmeyer (Tue Mar 18 2008 - 22:59:53 CDT)
- joy tehrani (Wed Mar 12 2008 - 17:44:52 CDT)
- Myunggi Yi (Tue Dec 12 2006 - 19:22:23 CST)
- Myunggi Yi (Tue Dec 12 2006 - 19:12:35 CST)
- Myunggi Yi (Tue Dec 12 2006 - 17:26:22 CST)
digest form
- John Stone (Wed Mar 17 2004 - 10:06:24 CST)
- Bogdan Costescu (Wed Mar 17 2004 - 05:10:43 CST)
- John Stone (Tue Mar 16 2004 - 10:09:07 CST)
- Dr. Daniel James White PhD (Tue Mar 16 2004 - 03:34:05 CST)
DIHE in topology file
- Peter Freddolino (Thu Sep 04 2008 - 07:51:51 CDT)
- politr_at_huji.ac.il (Thu Sep 04 2008 - 02:31:52 CDT)
dihedral & g(r)
- John Stone (Wed Apr 13 2005 - 09:34:13 CDT)
- Mgr. Lubos Vrbka (Wed Apr 13 2005 - 00:52:34 CDT)
- Kos (Tue Apr 12 2005 - 15:16:55 CDT)
Dihedral angle calculation!
- Jan Saam (Wed Jun 04 2003 - 16:54:02 CDT)
- Justin Gullingsrud (Wed Jun 04 2003 - 12:29:43 CDT)
- Justin Gullingsrud (Wed Jun 04 2003 - 12:08:32 CDT)
- Jan Saam (Wed Jun 04 2003 - 11:37:41 CDT)
- John Stone (Wed Jun 04 2003 - 11:32:15 CDT)
- Thomas Hedegaard Pedersen (Wed Jun 04 2003 - 10:58:36 CDT)
Dihedral angle calculations for alanine dipeptide
- Jindal Shah (Tue Sep 06 2005 - 12:36:42 CDT)
dihedral angles
- Stephane Spieser (Wed Apr 22 1998 - 09:09:34 CDT)
- Eduard Schreiner (Tue Dec 06 2005 - 09:35:22 CST)
- Michel Espinoza-Fonseca (Mon Dec 05 2005 - 17:28:28 CST)
- Narender Singh Maan (Mon Dec 05 2005 - 16:04:20 CST)
dihedral angles at the ends
- Brian Bennion (Tue Oct 05 2004 - 11:44:53 CDT)
- Meric Ayse Ovacik (Sat Oct 02 2004 - 06:42:20 CDT)
dihedral angles cleaned up
- Alexei Podtelezhnikov (Fri Aug 05 2005 - 17:47:13 CDT)
- John Stone (Thu Aug 04 2005 - 11:08:08 CDT)
- Alexei Podtelezhnikov (Thu Aug 04 2005 - 10:09:38 CDT)
dihedral angles cleaned up!
- Alexei Podtelezhnikov (Thu Aug 04 2005 - 11:19:31 CDT)
dihedral angles for a lot of identical molecules
- tatyana_at_fi.uib.no (Thu Jun 17 2004 - 04:32:29 CDT)
Dihedrale angles in VMD
- Axel Kohlmeyer (Thu Jul 03 2008 - 12:24:16 CDT)
- Jorgen Simonsen (Thu Jul 03 2008 - 07:43:07 CDT)
Dihedrals Angle
- Ajasja LjubetiÄ (Thu Jul 29 2010 - 02:13:30 CDT)
- ban arn (Wed Jul 28 2010 - 11:43:47 CDT)
diplaying multiple frames from DCD file
- diane lynch (Fri Aug 24 2001 - 15:11:20 CDT)
dipole
- Axel Kohlmeyer (Wed Mar 19 2008 - 07:32:17 CDT)
- Alessio Alexiadis (Wed Mar 19 2008 - 06:54:21 CDT)
dipole / move (align)
- Stéphane Pezennec (Fri Feb 11 2011 - 08:25:43 CST)
dipole moment
- Jan Saam (Fri Sep 08 2006 - 12:17:26 CDT)
- Axel Kohlmeyer (Fri Sep 08 2006 - 12:13:29 CDT)
- Axel Kohlmeyer (Fri Sep 08 2006 - 12:10:54 CDT)
- L. Michel Espinoza-Fonseca (Fri Sep 08 2006 - 11:46:59 CDT)
dipole moment - corrigendum!
- Jan Saam (Fri Sep 08 2006 - 12:18:15 CDT)
Dipole Moment Monitoring
- Axel Kohlmeyer (Mon Jun 06 2011 - 21:45:08 CDT)
- Sally Fisher (Mon Jun 06 2011 - 21:10:57 CDT)
Dipole moment?
- Ignacio Fernández Galván (Tue Jul 15 2008 - 09:52:07 CDT)
- Axel Kohlmeyer (Sat Jun 07 2008 - 12:47:19 CDT)
- Alexandre A. Vakhrouchev (Sat Jun 07 2008 - 13:25:40 CDT)
- Alexandre A. Vakhrouchev (Sat Jun 07 2008 - 07:21:55 CDT)
Direct manipulation of the camera
- poker_at_physics.usyd.edu.au (Wed Oct 21 2009 - 03:26:59 CDT)
- poker_at_physics.usyd.edu.au (Wed Oct 21 2009 - 00:21:57 CDT)
Disable the set output
- Leonardo Trabuco (Sat Jul 25 2009 - 10:54:53 CDT)
- Thomas C. Bishop (Thu Jul 23 2009 - 09:52:15 CDT)
- Nicolas Sapay (Thu Jul 23 2009 - 09:28:13 CDT)
- Axel Kohlmeyer (Thu Jul 23 2009 - 07:45:34 CDT)
- Nicolas SAPAY (Thu Jul 23 2009 - 05:15:24 CDT)
Discrepancy between colours when coloured by timestep and Tachyon rendered
- John Stone (Thu Jun 19 2008 - 13:54:40 CDT)
- Tim Carpenter (Thu Jun 19 2008 - 13:52:30 CDT)
- John Stone (Thu Jun 19 2008 - 13:25:49 CDT)
- John Stone (Thu Jun 19 2008 - 13:02:04 CDT)
- Tim Carpenter (Thu Jun 19 2008 - 12:48:40 CDT)
- John Stone (Thu Jun 19 2008 - 13:05:52 CDT)
discriminate aromatic ring face
- Michel Espinoza-Fonseca (Mon Dec 05 2005 - 10:45:47 CST)
- andrea spitaleri (Mon Dec 05 2005 - 09:54:38 CST)
display all frames simultaneously
- Peter Freddolino (Thu Apr 16 2009 - 22:32:26 CDT)
- Axel Kohlmeyer (Thu Apr 16 2009 - 22:11:12 CDT)
- Samuel Coulbourn Flores èŠ±å±± (Thu Apr 16 2009 - 21:35:59 CDT)
Display alternative atom locations using vmd
- John Stone (Thu Sep 29 2005 - 14:03:29 CDT)
- Wang, Yangzhou (Thu Sep 29 2005 - 13:35:47 CDT)
Display bond between fragment and protein residue
- Mackay Steffensen (Mon Jul 02 2007 - 12:24:47 CDT)
Display bond breaking
- Axel Kohlmeyer (Tue Mar 18 2008 - 22:25:27 CDT)
- Stanley, Yemin Shi (Tue Mar 18 2008 - 22:17:50 CDT)
display bonds
- John Stone (Wed Dec 19 2007 - 14:02:49 CST)
- Dongsheng Zhang (Fri Dec 14 2007 - 08:52:24 CST)
display Gaussian cube file
- Eduard Schreiner (Wed Jul 13 2005 - 04:05:27 CDT)
- John Stone (Tue Jul 12 2005 - 13:05:46 CDT)
- Jiabo Li (Tue Jul 12 2005 - 11:24:56 CDT)
Display Grasp potential map in VMD
- Wei Liu (Wed Jul 25 2007 - 16:15:14 CDT)
- John Stone (Thu Jul 26 2007 - 16:16:27 CDT)
display hexagonal periodic system
- Justin Gullingsrud (Wed Aug 10 2005 - 19:21:02 CDT)
- dimka (Wed Aug 10 2005 - 12:38:54 CDT)
Display issue on VMD for Linux
- John Stone (Thu Mar 12 2009 - 17:02:21 CDT)
- Samuel Coulbourn Flores èŠ±å±± (Thu Mar 12 2009 - 16:54:11 CDT)
- Axel Kohlmeyer (Wed Mar 04 2009 - 21:55:04 CST)
- Samuel Coulbourn Flores èŠ±å±± (Wed Mar 04 2009 - 19:43:59 CST)
Display Multiple Bond Order
- John Stone (Wed Jun 29 2011 - 15:24:24 CDT)
- Axel Kohlmeyer (Wed Jun 29 2011 - 12:41:50 CDT)
- Joseph Bylund (Wed Jun 29 2011 - 11:57:50 CDT)
Display not updated when using move() from Python in VMD 1.8.6
- Axel Kohlmeyer (Thu May 07 2009 - 10:45:00 CDT)
- John Stone (Thu May 07 2009 - 10:19:09 CDT)
- Axel Kohlmeyer (Thu May 07 2009 - 09:44:06 CDT)
- Pawel Kedzierski (Thu May 07 2009 - 07:31:25 CDT)
- Axel Kohlmeyer (Wed May 06 2009 - 18:18:54 CDT)
- Pawel Kedzierski (Wed May 06 2009 - 13:50:47 CDT)
display of electron density maps
- Axel Kohlmeyer (Thu Jun 03 2004 - 11:50:29 CDT)
- Eamon Caddigan (Thu Jun 03 2004 - 11:33:00 CDT)
- Karsten Suhre (Thu Jun 03 2004 - 07:53:20 CDT)
Display of H-bonded waters only
- pl (Wed Nov 03 2004 - 10:04:29 CST)
display of periodic DCD information
- John Stone (Thu Feb 14 2008 - 16:34:22 CST)
- Olaf Lenz (Thu Feb 14 2008 - 16:05:32 CST)
- Olaf Lenz (Thu Feb 14 2008 - 16:08:46 CST)
- Thomas C. Bishop (Thu Feb 14 2008 - 14:15:15 CST)
display of periodic DCD information/PBCTOOL
- Axel Kohlmeyer (Fri Feb 15 2008 - 12:22:40 CST)
- Thomas C. Bishop (Fri Feb 15 2008 - 11:44:24 CST)
display of the atom number beyond 100000 in pdb file
- John Stone (Wed Mar 03 2010 - 01:11:27 CST)
- YangMingjun (Wed Mar 03 2010 - 00:52:07 CST)
- Dipesh Bhattarai (Tue Mar 02 2010 - 21:41:53 CST)
- YangMingjun (Tue Mar 02 2010 - 20:36:25 CST)
Display on a Graphic Cluster
- John Stone (Fri Jan 28 2005 - 17:37:08 CST)
- Luis Rosales (Fri Jan 28 2005 - 17:54:15 CST)
- John Stone (Fri Jan 28 2005 - 13:55:58 CST)
- Luis Rosales (Fri Jan 28 2005 - 15:23:51 CST)
Display only side chains
- Justin Gullingsrud (Tue Mar 08 2005 - 10:33:32 CST)
- Jérôme Hénin (Mon Mar 07 2005 - 18:59:42 CST)
- Chang, Christopher (Mon Mar 07 2005 - 17:40:24 CST)
- Peter Holm (Mon Mar 07 2005 - 17:04:25 CST)
- John Stone (Mon Mar 07 2005 - 16:46:47 CST)
- Luis Rosales (Mon Mar 07 2005 - 17:36:29 CST)
- Peter Holm (Mon Mar 07 2005 - 16:21:02 CST)
- Peter Holm (Mon Mar 07 2005 - 15:42:40 CST)
display panel only showed 1/4 of its area on the screen.
- Margaret Cheung (Mon Jan 21 2002 - 01:40:58 CST)
- Jim Phillips (Sun Jan 20 2002 - 13:59:26 CST)
- John Stone (Sun Jan 20 2002 - 13:25:32 CST)
- Margaret Cheung (Sun Jan 20 2002 - 12:45:26 CST)
Display problem
- Stéphane (Tue Dec 04 2001 - 10:26:23 CST)
- John Stone (Tue Dec 04 2001 - 09:44:20 CST)
- Stéphane (Wed Nov 28 2001 - 05:52:41 CST)
Display shuts down on startup
- Peter Holm (Wed Jun 29 2005 - 02:37:37 CDT)
- Stefano Piana (Tue Jun 28 2005 - 20:37:15 CDT)
- John Stone (Tue Jun 28 2005 - 15:35:12 CDT)
- Peter Holm (Tue Jun 28 2005 - 07:05:04 CDT)
- John Stone (Mon Jun 27 2005 - 09:52:56 CDT)
- QS=2E_Teletch=E9a=22?= (Mon Jun 27 2005 - 07:33:36 CDT)
- Peter Holm (Mon Jun 27 2005 - 07:07:07 CDT)
- QS=2E_Teletch=E9a=22?= (Mon Jun 27 2005 - 06:55:45 CDT)
- Peter Holm (Mon Jun 27 2005 - 05:36:50 CDT)
Display size in VMD 1.8a29 for OS X
- John Stone (Tue Nov 05 2002 - 10:41:46 CST)
display surface amino acid beads
- John Stone (Tue Jan 12 2010 - 14:25:28 CST)
- Christine Horejs (Sat Jan 09 2010 - 04:22:34 CST)
Display the electrostatic character (delphimap) on the structure file
- John Stone (Wed May 24 2006 - 13:37:50 CDT)
- Eric Hajjar (Wed May 24 2006 - 02:48:31 CDT)
- John Stone (Tue May 16 2006 - 13:14:20 CDT)
- Eric Hajjar (Tue May 16 2006 - 01:51:14 CDT)
- John Stone (Mon May 15 2006 - 12:29:27 CDT)
- John Stone (Mon May 15 2006 - 12:15:11 CDT)
- Eric Hajjar (Thu May 11 2006 - 01:18:54 CDT)
- John Stone (Tue May 09 2006 - 09:25:09 CDT)
- Eric Hajjar (Tue May 09 2006 - 05:18:37 CDT)
Displaying an overlay of multiple structures with VMD
- John Stone (Thu Feb 10 2011 - 12:56:22 CST)
- Axel Kohlmeyer (Tue Feb 08 2011 - 16:28:23 CST)
- John Stone (Tue Feb 08 2011 - 14:22:21 CST)
- B.M.B. Vanschouwen (Tue Feb 08 2011 - 09:19:45 CST)
Displaying Bead and Bonds
- Axel Kohlmeyer (Wed Jan 19 2011 - 14:30:29 CST)
- Phelan Jr., Frederick R. Dr. (Wed Jan 19 2011 - 13:32:48 CST)
Displaying biological unit revisited
- John Stone (Tue Nov 07 2006 - 17:08:12 CST)
- Adrian Kaats (Thu Nov 02 2006 - 14:23:41 CST)
- John Stone (Wed Nov 01 2006 - 16:32:29 CST)
- Adrian Kaats (Tue Oct 31 2006 - 12:22:19 CST)
Displaying Counter alongside animation
- Adrian Koh (Mon Feb 11 2008 - 03:08:44 CST)
- Axel Kohlmeyer (Tue Feb 05 2008 - 03:23:44 CST)
- Adrian Koh (Tue Feb 05 2008 - 00:20:36 CST)
displaying double, triple bonds
- John Stone (Thu Aug 11 2005 - 15:41:31 CDT)
- Andrew Dalke (Tue Mar 29 2005 - 17:05:33 CST)
- Stern, Julie (Tue Mar 29 2005 - 14:56:57 CST)
displaying hydrogen bonds when hydrogens are not available
- Eric H. Lee (Thu Jun 19 2008 - 09:46:51 CDT)
- Axel Kohlmeyer (Thu Jun 19 2008 - 09:31:53 CDT)
- Y. U. Sasidhar (Thu Jun 19 2008 - 07:34:23 CDT)
Displaying local water molecules throughout trajectory
- John Stone (Thu Feb 26 2009 - 14:53:56 CST)
- Axel Kohlmeyer (Thu Feb 26 2009 - 15:20:50 CST)
- ben rodriguez (Thu Feb 26 2009 - 14:47:26 CST)
displaying many frames with periodic images
- John Stone (Mon Feb 21 2005 - 11:30:01 CST)
- Philip Blood (Mon Feb 21 2005 - 10:49:51 CST)
Displaying nearest images using PBCTools
- Olaf Lenz (Wed Apr 09 2008 - 03:06:08 CDT)
- Subramanian Vaitheeswaran (Tue Apr 08 2008 - 15:49:03 CDT)
displaying neighboring residues
- John Stone (Wed Sep 22 2004 - 12:36:51 CDT)
- Stern, Julie (Wed Sep 22 2004 - 11:54:26 CDT)
Displaying protein AND ligand from an amber trajectory
- George Tzotzos (Fri May 20 2011 - 09:16:14 CDT)
- Ajasja LjubetiÄ (Fri May 20 2011 - 09:11:24 CDT)
- Axel Kohlmeyer (Fri May 20 2011 - 09:07:14 CDT)
- George Tzotzos (Fri May 20 2011 - 08:31:17 CDT)
Displaying residues on chain A within X of chain B
- Irene Newhouse (Sat Sep 10 2011 - 00:49:34 CDT)
- Irene Newhouse (Sat Sep 10 2011 - 00:33:25 CDT)
- Axel Kohlmeyer (Fri Sep 09 2011 - 20:27:25 CDT)
- Mark Cunningham (Fri Sep 09 2011 - 20:40:36 CDT)
- Irene Newhouse (Fri Sep 09 2011 - 19:54:51 CDT)
- Axel Kohlmeyer (Fri Sep 09 2011 - 17:51:33 CDT)
- Irene Newhouse (Fri Sep 09 2011 - 16:19:18 CDT)
displaying residues within 5 A of ligand in vmd
- John Stone (Tue Mar 03 2009 - 10:25:12 CST)
- Falgun Shah (Tue Mar 03 2009 - 09:53:29 CST)
Displaying simulations and rotations
- Mauricio Carrillo Tripp (Wed Apr 06 2005 - 15:00:54 CDT)
- John Stone (Wed Apr 06 2005 - 11:23:09 CDT)
- Palmer, Teresa (Wed Apr 06 2005 - 11:03:11 CDT)
Displaying the periodic box ...
- Eduard Schreiner (Thu May 24 2007 - 12:39:40 CDT)
- Alexandr Isayev (Thu May 24 2007 - 10:59:08 CDT)
- Axel Kohlmeyer (Thu May 24 2007 - 09:19:44 CDT)
- Stéphane Téletchéa (Thu May 24 2007 - 09:54:25 CDT)
displaying tube/ribbon with varying diameter ?
- John Stone (Tue May 18 2004 - 08:56:09 CDT)
- Marc Baaden (Tue May 18 2004 - 05:26:26 CDT)
displaying velocity from dlpoly history
- Axel Kohlmeyer (Tue Jul 10 2007 - 15:07:16 CDT)
- Peter Freddolino (Tue Jul 10 2007 - 15:22:13 CDT)
- Stern, Julie (Tue Jul 10 2007 - 14:52:37 CDT)
Distance between atoms in frame
- snoze pa (Wed Jul 06 2011 - 09:53:32 CDT)
- sajad falsafi (Wed Jul 06 2011 - 05:56:58 CDT)
- Mark Cunningham (Tue Jul 05 2011 - 21:09:24 CDT)
- Axel Kohlmeyer (Tue Jul 05 2011 - 20:10:04 CDT)
- snoze pa (Tue Jul 05 2011 - 19:12:47 CDT)
- snoze pa (Tue Jul 05 2011 - 18:12:31 CDT)
Distance between center of mass of two amino acid residues.
- Axel Kohlmeyer (Sun Feb 19 2012 - 14:43:17 CST)
- Axel Kohlmeyer (Sun Feb 19 2012 - 11:37:25 CST)
- mish (Sun Feb 19 2012 - 10:27:45 CST)
Distance between COM for 2 chains for each frame of trajectory
- Axel Kohlmeyer (Wed May 20 2009 - 14:05:27 CDT)
- Axel Kohlmeyer (Wed May 20 2009 - 12:09:39 CDT)
- Florentina Tofoleanu (Wed May 20 2009 - 11:34:18 CDT)
Distance calculation in TkConsole
- Giovanni Bellesia (Thu Feb 10 2005 - 08:00:15 CST)
- Axel Kohlmeyer (Thu Feb 10 2005 - 07:44:33 CST)
- Leyla Celik (Thu Feb 10 2005 - 04:33:43 CST)
Distance lines
- Joseph Bylund (Thu Sep 09 2010 - 16:46:55 CDT)
- Patargias, George (Thu Sep 09 2010 - 15:24:38 CDT)
Distance measurement via measure bond
- John Stone (Mon Jun 04 2007 - 14:36:31 CDT)
- Axel Kohlmeyer (Mon Jun 04 2007 - 10:26:18 CDT)
- Philipp Schoen1 (Mon Jun 04 2007 - 10:32:02 CDT)
distance of two center of mass
- Axel Kohlmeyer (Mon Oct 05 2009 - 06:04:33 CDT)
- Nicola Giacche' (Mon Oct 05 2009 - 04:36:37 CDT)
distance to solvent accessible surface
- John Stone (Wed Jun 04 2003 - 16:23:06 CDT)
- Greg Moore (Wed Jun 04 2003 - 15:29:42 CDT)
distance tween two atoms
- John Stone (Wed Mar 22 2006 - 16:55:45 CST)
- lily jin (Tue Mar 21 2006 - 15:42:18 CST)
Distance, angle
- John Stone (Mon Mar 24 2003 - 10:27:52 CST)
- chandran karunakaran (Sat Mar 22 2003 - 15:09:10 CST)
distances
- Axel Kohlmeyer (Tue Apr 11 2006 - 14:11:13 CDT)
- Kenley Barrett (Tue Apr 11 2006 - 11:19:41 CDT)
distances on a isosurface plot
- John Stone (Thu Jan 26 2006 - 14:21:37 CST)
- Marco Neves (Wed Jan 25 2006 - 12:28:09 CST)
distribution analysis
- Lubos Vrbka (Tue Dec 07 2004 - 02:23:05 CST)
- John Stone (Wed Dec 01 2004 - 10:43:51 CST)
- Lubos Vrbka (Wed Dec 01 2004 - 10:29:25 CST)
- John Stone (Wed Dec 01 2004 - 10:02:22 CST)
- Jerry Ebalunode (Wed Dec 01 2004 - 10:00:26 CST)
- Lubos Vrbka (Wed Dec 01 2004 - 09:25:53 CST)
Disulfide bonds
- Pavan Ghatty (Mon Oct 19 2009 - 10:55:24 CDT)
- Andres Morales N (Tue Oct 13 2009 - 01:02:30 CDT)
Disulfude bonds
- JC Gumbart (Tue Oct 13 2009 - 01:20:11 CDT)
- JC Gumbart (Tue Oct 13 2009 - 01:08:13 CDT)
- Andres Morales N (Tue Oct 13 2009 - 01:00:39 CDT)
- Schreiner Eduard (Tue Oct 13 2009 - 01:12:23 CDT)
disulphide bond
- Peter Freddolino (Tue May 30 2006 - 13:38:20 CDT)
- Naser, Md Abu (Tue May 30 2006 - 13:09:43 CDT)
disulphide bond formation
- Axel Kohlmeyer (Fri Jun 05 2009 - 10:45:12 CDT)
- gurunath katagi (Fri Jun 05 2009 - 10:14:11 CDT)
Divide by Zero Error , but can't find the zero!
- Arneh Babakhani (Thu Jul 05 2007 - 20:03:45 CDT)
- Axel Kohlmeyer (Thu Jul 05 2007 - 14:53:16 CDT)
- Arneh Babakhani (Thu Jul 05 2007 - 14:57:03 CDT)
Dividing the water in groups like WAT1; WAT2; WAT3
- PAUL NEWMAN (Wed Jun 22 2011 - 20:41:32 CDT)
DL_POLY output files
- John Stone (Tue Jul 25 2006 - 15:59:58 CDT)
- Viswanadham Sridhara (Tue Jul 25 2006 - 15:31:08 CDT)
dll by c++ cannot be recognized by VMD tk console ?
- John Stone (Mon Nov 02 2009 - 13:57:35 CST)
- vmd_chcwaaa (Sun Nov 01 2009 - 01:32:42 CDT)
DLP Stereo and VR toolkit integration with vmd
- Simon Su (Wed Sep 16 2009 - 16:29:22 CDT)
- Simon Su (Wed Sep 16 2009 - 16:04:25 CDT)
- John Stone (Wed Sep 16 2009 - 16:10:38 CDT)
DLPOLY HISTORY FILE in VMD
- Utpal Sarkar (Tue Mar 18 2008 - 11:08:29 CDT)
- Axel Kohlmeyer (Tue Mar 18 2008 - 11:23:31 CDT)
dlpoly history files in vmd 1.8.4
- Mgr. Lubos Vrbka (Fri May 05 2006 - 00:48:51 CDT)
- John Stone (Thu May 04 2006 - 10:38:26 CDT)
- John Stone (Thu May 04 2006 - 08:28:45 CDT)
- Mgr. Lubos Vrbka (Thu May 04 2006 - 01:09:54 CDT)
- John Stone (Wed May 03 2006 - 17:34:16 CDT)
- Mgr. Lubos Vrbka (Wed May 03 2006 - 14:24:57 CDT)
- John Stone (Wed May 03 2006 - 10:24:15 CDT)
- Mgr. Lubos Vrbka (Wed May 03 2006 - 02:26:50 CDT)
dmpc membrane
- Swarna Patra (Mon Jul 04 2005 - 20:17:43 CDT)
DNA and low pH
- Peter Freddolino (Wed Jan 31 2007 - 19:51:26 CST)
- Gaurav Sharma (Wed Jan 31 2007 - 15:06:46 CST)
DNA form
- Taufik Al-Sarraj (Thu Feb 11 2010 - 12:42:19 CST)
DNA hairpin
- Chirag Vora (Sun Aug 21 2011 - 11:49:44 CDT)
- Anna (Sat Aug 20 2011 - 04:30:52 CDT)
- Shesh Nath (Sat Aug 20 2011 - 04:41:20 CDT)
- Jernej Zidar (Sat Aug 20 2011 - 02:39:31 CDT)
- Shesh Nath (Sat Aug 20 2011 - 01:19:04 CDT)
do not compute/draw bonds?
- John Stone (Fri Jun 24 2005 - 11:02:38 CDT)
- Axel Kohlmeyer (Thu Jun 23 2005 - 12:26:44 CDT)
- Ivan Degtyarenko (Thu Jun 23 2005 - 08:36:33 CDT)
Do psf generated by psfgen and psf produced by "$sel writepsf" function in VMD have different impact on MD simulation using NAMD?
- jnsong (Tue May 17 2011 - 21:42:42 CDT)
- jnsong (Tue May 17 2011 - 21:32:52 CDT)
- John Stone (Tue May 17 2011 - 10:09:55 CDT)
- Axel Kohlmeyer (Tue May 17 2011 - 09:44:26 CDT)
- jnsong (Tue May 17 2011 - 08:54:54 CDT)
Dobule and triple bonds
- Peter Freddolino (Tue Jan 13 2009 - 09:30:56 CST)
- Max (Tue Jan 13 2009 - 04:32:04 CST)
docking
- John Stone (Wed Sep 29 2004 - 20:33:05 CDT)
- Adam Kubach (Wed Sep 29 2004 - 20:20:38 CDT)
docking in VMD
- Han Choe (Tue Jan 20 2004 - 01:24:57 CST)
- John Stone (Mon Jan 19 2004 - 07:54:36 CST)
- Han Choe (Mon Jan 19 2004 - 06:03:48 CST)
Docking protein-protein
- vladanstefanovic_at_kg.ac.rs (Wed May 16 2012 - 16:08:22 CDT)
Does command "animate delete all" free memory?
- Fred (Rui FENG) (Thu Feb 26 2009 - 17:00:49 CST)
- John Stone (Thu Feb 26 2009 - 16:48:58 CST)
- Fred (Rui FENG) (Thu Feb 26 2009 - 15:57:56 CST)
- Fred (Rui FENG) (Thu Feb 26 2009 - 15:00:53 CST)
- John Stone (Thu Feb 26 2009 - 15:16:44 CST)
Does Paratool support CgenFF?
- JC Gumbart (Wed Sep 28 2011 - 09:39:23 CDT)
- Alexandre Suman de Araujo (Wed Sep 28 2011 - 09:28:14 CDT)
- Alexandre Suman de Araujo (Wed Sep 28 2011 - 08:39:04 CDT)
- JC Gumbart (Thu Sep 15 2011 - 01:31:32 CDT)
- John Stone (Wed Sep 14 2011 - 10:10:31 CDT)
- Axel Kohlmeyer (Wed Sep 14 2011 - 09:37:26 CDT)
- Alexandre Suman de Araujo (Wed Sep 14 2011 - 07:22:33 CDT)
Does this work with VMD: Nvidia 3DVision Glasses + SyncMaster 2233RZ + GTX 580 + Win7?
- John Stone (Sat Jul 09 2011 - 22:20:20 CDT)
- Ajasja LjubetiÄ (Sat Jul 09 2011 - 17:06:19 CDT)
does vmd allow change in volume
- Axel Kohlmeyer (Thu Nov 18 2010 - 14:34:29 CST)
- David Wedner (Thu Nov 18 2010 - 12:57:00 CST)
Does VMD support cfg file format?
- John Stone (Wed Oct 01 2008 - 12:57:19 CDT)
- zhjjvmd (Wed Oct 01 2008 - 11:58:06 CDT)
- zhjjvmd (Wed Oct 01 2008 - 12:00:33 CDT)
- John Stone (Wed Oct 01 2008 - 11:03:05 CDT)
- zhjjvmd (Wed Oct 01 2008 - 03:52:32 CDT)
Does Vmd support GUI and rendering separate
- John Stone (Thu Oct 27 2005 - 13:43:42 CDT)
- Terry Jordan (Thu Oct 27 2005 - 09:26:10 CDT)
- John Stone (Tue Oct 25 2005 - 15:09:00 CDT)
- Terry Jordan (Tue Oct 25 2005 - 14:26:06 CDT)
Does VMD support LES simulations?
- John Stone (Fri Jan 30 2004 - 01:26:48 CST)
- Vlad Cojocaru (Thu Jan 29 2004 - 11:17:28 CST)
Does VMD support LES simulations?]
- John Stone (Fri Jan 30 2004 - 13:10:34 CST)
Does VMD support to draw a velocity field diagram?
- Axel Kohlmeyer (Thu Mar 13 2008 - 18:03:54 CDT)
- Fred (Rui FENG) (Thu Mar 13 2008 - 16:26:13 CDT)
Does volume coloring require GLSL rendering?
- John Stone (Tue Oct 03 2006 - 14:27:52 CDT)
- Robin L Hayes (Mon Oct 02 2006 - 19:26:24 CDT)
DOPC membrane
- JC Gumbart (Tue Feb 15 2011 - 19:52:11 CST)
- snoze pa (Tue Feb 15 2011 - 17:35:24 CST)
dots per inch?
- Dan Strahs (Wed Oct 19 2005 - 16:46:02 CDT)
- Chang, Christopher (Wed Oct 19 2005 - 15:26:46 CDT)
- John Stone (Wed Oct 19 2005 - 14:56:23 CDT)
- Kelvin Luther (Wed Oct 19 2005 - 14:01:18 CDT)
double bonds
- J. Rui Rodrigues (Thu Sep 24 2009 - 07:22:09 CDT)
- Taufik Al-Sarraj (Wed Sep 23 2009 - 13:13:12 CDT)
- John Stone (Wed Sep 23 2009 - 13:17:09 CDT)
- Taufik Al-Sarraj (Wed Sep 23 2009 - 12:22:27 CDT)
double image for one eye with crystal eyes stereo
- John Stone (Fri Jun 13 2003 - 10:13:58 CDT)
- John Stone (Fri Jun 13 2003 - 10:04:58 CDT)
- Dr. Daniel James White PhD (Fri Jun 13 2003 - 03:50:12 CDT)
- Dr. Daniel James White PhD (Fri Jun 13 2003 - 03:38:01 CDT)
- John Stone (Thu Jun 12 2003 - 11:24:51 CDT)
- John Stone (Thu Jun 12 2003 - 11:07:01 CDT)
- Bogdan Costescu (Thu Jun 12 2003 - 11:02:01 CDT)
- Bogdan Costescu (Thu Jun 12 2003 - 10:41:47 CDT)
- John Stone (Thu Jun 12 2003 - 10:11:43 CDT)
- Dr. Daniel James White PhD (Thu Jun 12 2003 - 09:48:30 CDT)
- Bogdan Costescu (Thu Jun 12 2003 - 09:34:36 CDT)
- Dr. Daniel James White PhD (Thu Jun 12 2003 - 08:38:37 CDT)
doubling a membrane
- Cesar Luis Avila (Tue Nov 11 2008 - 18:44:07 CST)
- Cesar Luis Avila (Tue Nov 11 2008 - 13:23:33 CST)
- Peter Freddolino (Mon Nov 10 2008 - 17:29:24 CST)
- Edward Lyman (Mon Nov 10 2008 - 16:42:13 CST)
doubts in movie making using vmd.
- John Stone (Wed Mar 28 2007 - 21:52:17 CDT)
- Axel Kohlmeyer (Wed Mar 28 2007 - 21:47:12 CDT)
- gadde suneetha (Wed Mar 28 2007 - 19:05:05 CDT)
download pdb files from PDB with vmd 1.8.4b10
- John Stone (Thu Apr 06 2006 - 09:36:28 CDT)
- Vlad Cojocaru (Thu Apr 06 2006 - 03:55:16 CDT)
Download the newest version of VMD
- Axel Kohlmeyer (Mon Jan 19 2009 - 10:09:33 CST)
- Carsten Olbrich (Mon Jan 19 2009 - 05:05:08 CST)
- ÖÜÎÄ²ý (Mon Jan 19 2009 - 04:15:52 CST)
Download vmd for 64-bit Intel Itanium
- John Stone (Mon Nov 05 2007 - 16:55:20 CST)
- FyD (Mon Nov 05 2007 - 15:00:36 CST)
Downloadable version
- chucruz_at_ks.uiuc.edu (Thu Oct 29 2009 - 02:51:04 CDT)
DOWSER: child process exited abnormally
- Leonardo Trabuco (Thu Apr 26 2007 - 11:27:53 CDT)
- Robert Selwyne (Thu Apr 26 2007 - 06:57:03 CDT)
DPPC
- Eduard Schreiner (Thu Jul 08 2010 - 23:42:27 CDT)
- jouko_at_uchicago.edu (Thu Jul 08 2010 - 22:21:25 CDT)
DPPC Bilayer Size
- JC Gumbart (Fri Sep 15 2006 - 19:46:30 CDT)
- Akshay Patny (Fri Sep 15 2006 - 12:07:51 CDT)
- Axel Kohlmeyer (Thu Sep 14 2006 - 18:26:45 CDT)
- L. Michel Espinoza-Fonseca (Thu Sep 14 2006 - 18:11:28 CDT)
- Ting Wang (Thu Sep 14 2006 - 17:27:55 CDT)
- Akshay Patny (Thu Sep 14 2006 - 13:49:06 CDT)
Draw a box cell for a crystal
- Bjoern Olausson (Wed Sep 15 2010 - 08:19:32 CDT)
- Axel Kohlmeyer (Wed Sep 15 2010 - 08:15:50 CDT)
- Germain Vallverdu (Wed Sep 15 2010 - 06:43:35 CDT)
Draw a circle
- John Stone (Fri Mar 23 2007 - 10:25:36 CDT)
- Abi Ghanem josephine (Fri Mar 23 2007 - 09:47:12 CDT)
draw a vector
- John Stone (Sat Nov 30 2002 - 15:17:39 CST)
- Nguyen Hoang Phuong (Thu Nov 28 2002 - 07:59:56 CST)
draw bond across cell boudary
- Nima Nouri (Fri Jan 21 2011 - 01:01:23 CST)
- pascal boulet (Thu Jan 20 2011 - 15:47:44 CST)
Draw Bonds
- John Stone (Mon Aug 08 2005 - 18:48:11 CDT)
- Joshua D. Moore (Mon Aug 08 2005 - 14:48:05 CDT)
- Bob Johnson (Mon Aug 08 2005 - 10:42:13 CDT)
draw command
- Justin Gullingsrud (Thu Apr 01 2004 - 11:17:30 CST)
- Vlad Cojocaru (Thu Apr 01 2004 - 09:30:13 CST)
draw command with different material
- John Stone (Thu Feb 26 2009 - 23:46:09 CST)
- BIN ZHANG (Thu Feb 26 2009 - 23:31:08 CST)
draw hydrophobic contact
- Nuno Ricardo Loureiro Ferreira (Sat Dec 02 2006 - 03:18:05 CST)
- Nuno Ricardo Loureiro Ferreira (Thu Nov 30 2006 - 15:11:28 CST)
- gcmc jie (Thu Nov 30 2006 - 13:41:10 CST)
Draw in a new layer problems
- Axel Kohlmeyer (Fri May 16 2008 - 10:48:12 CDT)
- Peter Freddolino (Fri May 16 2008 - 09:09:43 CDT)
- Nuno Sousa Cerqueira (Fri May 16 2008 - 08:36:58 CDT)
draw intersection volume between two spheres
- Axel Kohlmeyer (Wed Sep 07 2011 - 10:35:43 CDT)
- Filip Persson (Wed Sep 07 2011 - 08:30:33 CDT)
draw line
- John Stone (Fri Jan 26 2007 - 17:16:22 CST)
- Narender Singh Maan (Fri Jan 26 2007 - 17:01:14 CST)
draw lines
- John Stone (Mon Jun 21 2004 - 14:02:54 CDT)
- Osmany Guirola Cruz (Wed May 26 2004 - 07:36:13 CDT)
- Axel Kohlmeyer (Wed May 26 2004 - 01:01:05 CDT)
- Osmany Guirola Cruz (Tue May 25 2004 - 13:02:36 CDT)
draw multiple frames
- John Stone (Mon Dec 01 2003 - 12:16:16 CST)
- Karunesh Arora (Fri Nov 28 2003 - 21:30:03 CST)
draw text or title in pov
- John Stone (Thu Apr 04 2002 - 21:56:25 CST)
- Peter Varnai (Thu Apr 04 2002 - 10:04:03 CST)
Drawing a high resolution transparent or translucent sphere
- Axel Kohlmeyer (Wed Apr 11 2012 - 23:45:18 CDT)
- John Stone (Wed Apr 11 2012 - 21:26:58 CDT)
- Andrew DeYoung (Wed Apr 11 2012 - 20:37:20 CDT)
drawing a length scale on the vmd display
- maria goranovic (Tue May 04 2010 - 03:56:00 CDT)
- maria goranovic (Tue May 04 2010 - 03:01:07 CDT)
Drawing a line between two atoms
- Marx Gomes Van der Linden (Mon Jun 16 2008 - 17:10:12 CDT)
drawing a membrane
- John Stone (Tue May 08 2007 - 16:34:02 CDT)
- dimka (Tue May 08 2007 - 15:10:03 CDT)
drawing a plane
- John Stone (Tue Jun 29 2004 - 13:45:14 CDT)
- vivek sharma (Tue Jun 29 2004 - 09:30:00 CDT)
drawing a truncated octahedron
- Vlad Cojocaru (Mon Mar 13 2006 - 04:07:17 CST)
- John Stone (Fri Mar 10 2006 - 18:40:17 CST)
- Vlad Cojocaru (Wed Mar 08 2006 - 05:26:06 CST)
Drawing atom - atom bonds
- Justin Gullingsrud (Mon Sep 16 2002 - 09:44:49 CDT)
- Yves Frapart (Mon Sep 16 2002 - 11:08:13 CDT)
drawing bond for coarse grained model
- Axel Kohlmeyer (Thu Jul 23 2009 - 14:06:53 CDT)
- Sunjoo Lee (Thu Jul 23 2009 - 13:25:46 CDT)
drawing bonds
- Justin Gullingsrud (Tue Mar 25 2003 - 09:40:19 CST)
- John Stone (Tue Mar 25 2003 - 09:36:38 CST)
- Lubos Vrbka (Tue Mar 25 2003 - 09:27:05 CST)
Drawing Bonds in Periodic structure
- soumyajyoti haldar (Tue Mar 01 2011 - 03:50:36 CST)
- Olaf Lenz (Tue Mar 01 2011 - 03:06:06 CST)
- soumyajyoti haldar (Mon Feb 28 2011 - 10:07:32 CST)
Drawing bonds to metals
- John Stone (Tue Apr 08 2003 - 17:10:39 CDT)
- Stephen Koch (Tue Apr 08 2003 - 15:37:08 CDT)
drawing bonds with vmd/python interface
- Justin Gullingsrud (Fri Mar 22 2002 - 11:55:45 CST)
- Sonja M. Schwarzl (Fri Mar 22 2002 - 09:36:46 CST)
Drawing cylinder in VMD
- John Stone (Wed Dec 02 2009 - 20:36:13 CST)
- rainy908_at_yahoo.com (Wed Dec 02 2009 - 20:22:50 CST)
- rainy908_at_yahoo.com (Wed Dec 02 2009 - 17:29:24 CST)
- rainy908_at_yahoo.com (Wed Dec 02 2009 - 17:36:00 CST)
- John Stone (Wed Dec 02 2009 - 17:35:04 CST)
Drawing electron density surfaces (from cube files)
- John Stone (Thu Jan 31 2002 - 15:36:29 CST)
- Francesco Gervasio (Fri Jan 25 2002 - 07:01:41 CST)
drawing helices from partial aminoacids
- John Stone (Thu Dec 07 2006 - 11:04:39 CST)
- Streutker, J (Thu Dec 07 2006 - 04:40:24 CST)
drawing lines
- Peter Freddolino (Tue Nov 25 2008 - 18:23:12 CST)
- Ryan Pavlovicz (Tue Nov 25 2008 - 12:38:31 CST)
drawing objects
- John Stone (Tue Sep 09 2003 - 02:20:35 CDT)
- Karunesh Arora (Sat Aug 30 2003 - 08:37:22 CDT)
Drawing of bonds while trajectory animation.
- John Stone (Thu Sep 18 2003 - 14:09:30 CDT)
- Hiroyuki Maeshima (Thu Sep 18 2003 - 07:53:17 CDT)
drawing of direction vectors for conformational transition
- Charles McCallum (Thu Sep 14 2006 - 10:42:06 CDT)
- Axel Kohlmeyer (Thu Sep 14 2006 - 11:25:47 CDT)
- Peter Freddolino (Wed Sep 13 2006 - 17:34:34 CDT)
- Axel Kohlmeyer (Wed Sep 13 2006 - 14:18:03 CDT)
- Zu Thur Yew (Wed Sep 13 2006 - 11:52:45 CDT)
Drawing oriented cylinders
- John Stone (Wed Dec 29 2004 - 18:04:17 CST)
- Jake . (Wed Dec 29 2004 - 14:16:10 CST)
drawing poligons
- John Stone (Tue Apr 06 2004 - 09:57:04 CDT)
- Vlad Cojocaru (Tue Apr 06 2004 - 06:39:54 CDT)
drawing spheres
- Andrew Dalke (Wed Nov 19 1997 - 08:03:35 CST)
- Nithin Rai (Tue Nov 18 1997 - 11:34:14 CST)
drawing the edges of a non-rectangular box
- Eduard Schreiner (Fri Mar 11 2005 - 13:02:50 CST)
- Andre Farias de Moura (Fri Mar 11 2005 - 06:17:46 CST)
Drawing the simulation box from a Gromacs trajectory
- Axel Kohlmeyer (Mon Mar 12 2012 - 14:30:23 CDT)
- Andrew DeYoung (Mon Mar 12 2012 - 12:43:23 CDT)
drawing trajectory of a molecule
- L. Michel Espinoza-Fonseca (Fri Dec 07 2007 - 09:40:51 CST)
- L. Michel Espinoza-Fonseca (Fri Dec 07 2007 - 09:29:56 CST)
- Axel Kohlmeyer (Fri Dec 07 2007 - 09:20:28 CST)
- L. Michel Espinoza-Fonseca (Fri Dec 07 2007 - 08:30:04 CST)
Drawing using variables
- Axel Kohlmeyer (Mon Feb 21 2011 - 17:14:58 CST)
- Phelan Jr., Frederick R. Dr. (Mon Feb 21 2011 - 16:01:52 CST)
Drawing Vectors
- John Stone (Thu Nov 18 2004 - 17:06:08 CST)
- John Stone (Wed Nov 17 2004 - 10:23:17 CST)
- Anthony Ivetac (Tue Nov 16 2004 - 08:53:35 CST)
drawing waterbox
- BIN ZHANG (Thu Aug 27 2009 - 11:02:46 CDT)
- John Stone (Thu Aug 27 2009 - 10:29:08 CDT)
- Narender Singh Maan (Thu Aug 27 2009 - 10:14:58 CDT)
- John Stone (Wed Aug 26 2009 - 13:29:10 CDT)
- Narender Singh Maan (Wed Aug 26 2009 - 09:35:56 CDT)
dssp in vmd
- John Stone (Wed Aug 17 2005 - 14:39:51 CDT)
- pascal.baillod_at_epfl.ch (Wed Aug 17 2005 - 02:15:11 CDT)
dssp in vmd (II)
- John Stone (Fri Jul 27 2007 - 12:42:49 CDT)
- pascal.baillod_at_epfl.ch (Fri Jul 27 2007 - 05:04:54 CDT)
dti monitor linux
- John Stone (Fri Nov 29 2002 - 15:58:59 CST)
- Peter Tieleman (Fri Nov 29 2002 - 15:12:58 CST)
dtr plugin: does it work for forces traj?
- John Stone (Wed Nov 10 2010 - 13:22:07 CST)
- Edward Lyman (Fri Nov 05 2010 - 11:03:55 CDT)
dublicated residue name in PDB/PSF
- daniel aguayo (Wed Feb 01 2006 - 12:24:16 CST)
- ziemys_at_ecr6.ohio-state.edu (Wed Feb 01 2006 - 09:15:37 CST)
dumb movie maker question
- Axel Kohlmeyer (Thu May 03 2007 - 10:16:10 CDT)
- Nichols A. Romero (Thu May 03 2007 - 10:32:26 CDT)
dummy atom ?
- John Stone (Wed Feb 02 2005 - 09:59:34 CST)
- mbb (Wed Feb 02 2005 - 09:50:21 CST)
dummy atoms and FEP
- Peter Freddolino (Thu Apr 06 2006 - 11:45:26 CDT)
- Raul Araya Secchi (Thu Apr 06 2006 - 11:32:32 CDT)
duplicate atom coordinates in PDB files
- John Stone (Mon Feb 16 2004 - 15:10:06 CST)
- Streiff, John H. (Mon Feb 16 2004 - 11:57:51 CST)
duplicate frames / slow down movie
- Axel Kohlmeyer (Tue Jan 25 2011 - 08:55:42 CST)
- Nicolas Belloy (Tue Jan 25 2011 - 07:50:10 CST)
Duplicate VMD-L emails...
- John Stone (Tue Jun 05 2007 - 13:11:26 CDT)
duration of video mpeg
- Andres Palencia (Mon Dec 04 2006 - 06:12:51 CST)
- Bogdan Costescu (Mon Dec 04 2006 - 05:18:53 CST)
- Axel Kohlmeyer (Sun Dec 03 2006 - 16:31:58 CST)
- Andres Palencia (Sun Dec 03 2006 - 13:07:28 CST)
- Axel Kohlmeyer (Sun Dec 03 2006 - 09:39:28 CST)
- Andres Palencia (Sat Dec 02 2006 - 11:39:04 CST)
Dynamic 'Determine file type' list in main menu !?!
- John Stone (Tue May 01 2007 - 12:38:46 CDT)
- Axel Kohlmeyer (Fri Apr 27 2007 - 09:02:09 CDT)
- Rob (Fri Apr 27 2007 - 01:14:37 CDT)
dynamic atom selection
- Axel Kohlmeyer (Tue Nov 09 2010 - 11:06:31 CST)
- Jérôme Hénin (Tue Nov 09 2010 - 08:28:49 CST)
- Axel Kohlmeyer (Tue Nov 09 2010 - 08:10:49 CST)
- Ajasja LjubetiÄ (Tue Nov 09 2010 - 08:06:58 CST)
- Leonardo Trabuco (Tue Nov 09 2010 - 08:01:15 CST)
- Stephen Cox (Tue Nov 09 2010 - 07:11:58 CST)
Dynamic bond calculation
- John Stone (Tue Aug 29 2006 - 14:27:46 CDT)
- Ignacio Fernández Galván (Tue Aug 29 2006 - 02:49:30 CDT)
dynamic bonding
- Axel Kohlmeyer (Tue Mar 27 2007 - 15:48:22 CDT)
- John Stone (Tue Mar 27 2007 - 15:39:26 CDT)
- Zheng Hu (Tue Mar 27 2007 - 14:21:02 CDT)
Dynamic bonds and H2 molecules.
- Axel Kohlmeyer (Wed Nov 14 2007 - 04:07:00 CST)
- David Schall (Tue Nov 13 2007 - 11:17:30 CST)
dynamic bonds question??
- John Stone (Thu Sep 09 2004 - 17:38:07 CDT)
- David Schall (Thu Sep 09 2004 - 16:20:47 CDT)
dynamic coloring
- John Stone (Wed Apr 06 2005 - 13:49:01 CDT)
- Leonor Cruzeiro (Mon Apr 04 2005 - 11:22:02 CDT)
- John Stone (Fri Jan 21 2005 - 17:26:46 CST)
- Jay Lee (Fri Jan 21 2005 - 12:36:39 CST)
Dynamic lines
- John Stone (Wed Nov 02 2011 - 14:12:35 CDT)
- Bogdan Costescu (Wed Nov 02 2011 - 13:42:01 CDT)
- John Stone (Mon Oct 31 2011 - 16:18:33 CDT)
- Axel Kohlmeyer (Mon Oct 31 2011 - 14:32:47 CDT)
- Bogdan Costescu (Mon Oct 31 2011 - 13:21:59 CDT)
Dynamic selection of residues in a trajectory
- Sanjeev B.S. (Wed May 19 2004 - 08:53:36 CDT)
- Axel Kohlmeyer (Wed May 19 2004 - 08:45:05 CDT)
- Sanjeev B.S. (Wed May 19 2004 - 04:34:24 CDT)
Dynamic selection of residues on a trajectory
- amit_at_mbu.iisc.ernet.in (Tue Nov 07 2006 - 11:07:13 CST)
- amit_at_mbu.iisc.ernet.in (Tue Nov 07 2006 - 10:45:19 CST)
dynamical list of atoms
- John Stone (Wed Sep 06 2006 - 11:01:29 CDT)
- Axel Kohlmeyer (Wed Sep 06 2006 - 10:54:30 CDT)
- Silvina Matysiak (Wed Sep 06 2006 - 10:02:25 CDT)
Dynamical Network Analysis programs gncommunities and subopt
- elena ermakova (Sat Apr 14 2012 - 01:40:33 CDT)
dynamically changing label...
- John Stone (Mon Oct 10 2005 - 16:15:02 CDT)
- Ravinder Abrol (Mon Oct 10 2005 - 16:12:52 CDT)
- John Stone (Mon Oct 10 2005 - 14:54:18 CDT)
- Ravinder Abrol (Thu Oct 06 2005 - 02:27:26 CDT)
Dynamically displaying the length of hydrogen bonds
- Axel Kohlmeyer (Fri Mar 30 2012 - 12:44:35 CDT)
- Andrew DeYoung (Fri Mar 30 2012 - 11:54:56 CDT)
- Wang Yi (Fri Mar 30 2012 - 11:24:22 CDT)
- Andrew DeYoung (Fri Mar 30 2012 - 10:30:08 CDT)
Dynamically updating water colors for each frame of a trajectory
- J. Nathan Scott (Wed Feb 23 2011 - 12:10:38 CST)
- Jérôme Hénin (Thu Feb 17 2011 - 04:10:04 CST)
- Axel Kohlmeyer (Wed Feb 16 2011 - 18:01:35 CST)
- J. Nathan Scott (Wed Feb 16 2011 - 17:17:28 CST)
DynamicBonding
- Ziemys, Arturas (Fri Apr 09 2010 - 15:34:09 CDT)
- Axel Kohlmeyer (Fri Apr 09 2010 - 15:43:03 CDT)
- Ziemys, Arturas (Fri Apr 09 2010 - 15:50:58 CDT)
- Axel Kohlmeyer (Fri Apr 09 2010 - 15:23:38 CDT)
- Ziemys, Arturas (Fri Apr 09 2010 - 14:10:56 CDT)
DynamicBonds representation
- John Stone (Thu Dec 16 2004 - 13:33:13 CST)
- Axel Kohlmeyer (Thu Dec 16 2004 - 13:04:27 CST)
- Lars Bruno Hansen (Thu Dec 16 2004 - 08:58:39 CST)
E-D stereo glasses
- John Stone (Sat Mar 03 2007 - 14:09:22 CST)
- aneamtu_at_iasi.mednet.ro (Sat Mar 03 2007 - 04:44:51 CST)
easy way to adjust dihedral angles?
- Peter Freddolino (Fri Nov 02 2007 - 14:29:14 CDT)
- Samuel Flores (Thu Nov 01 2007 - 13:58:13 CDT)
ed and vmd
- John Stone (Mon Mar 12 2007 - 17:23:24 CDT)
- Nadine Utz (Abt. Koslowski) (Mon Mar 12 2007 - 12:58:49 CDT)
eigen values
- Axel Kohlmeyer (Thu Aug 02 2007 - 11:51:00 CDT)
- Myunggi Yi (Wed Aug 01 2007 - 14:36:00 CDT)
Eigen values of Moment of Intertia Tensor
- greddy1_at_umd.edu (Fri Apr 25 2008 - 15:12:19 CDT)
- greddy1_at_umd.edu (Fri Apr 25 2008 - 10:19:52 CDT)
EIGENVECTOR ANALYSIS
- John Stone (Wed Oct 25 2006 - 12:40:57 CDT)
- Tim Meyer (Tue Oct 24 2006 - 08:25:47 CDT)
Elastic Properties
- John Stone (Wed Nov 15 2006 - 18:07:44 CST)
- Jennifer A Carvajal (Tue Nov 14 2006 - 14:51:13 CST)
electric field
- Ekta Khurana (Sat Sep 02 2006 - 20:21:23 CDT)
Electron density
- John Stone (Thu Jan 24 2008 - 18:08:52 CST)
- Kristin Wunsch (Wed Jan 23 2008 - 09:03:12 CST)
Electron Density Map Display
- John Stone (Tue Apr 09 2002 - 13:02:21 CDT)
electron density map is shifted?
- John Stone (Thu Aug 09 2007 - 14:57:55 CDT)
- John Stone (Thu Jul 12 2007 - 22:28:21 CDT)
- Gunnar Schroeder (Thu Jul 12 2007 - 19:14:01 CDT)
Electron density profile
- Cesar Luis Avila (Thu May 31 2007 - 11:30:29 CDT)
Electron microscopy surface with VMD?
- John Stone (Thu Jul 12 2007 - 16:57:22 CDT)
- Emmanuel Levy (Thu Jul 12 2007 - 16:37:18 CDT)
Electrostatic - PMEpot
- daniel aguayo (Mon Jun 16 2008 - 09:02:08 CDT)
- Leonardo Trabuco (Fri Jun 13 2008 - 13:13:00 CDT)
- daniel aguayo (Fri Jun 13 2008 - 12:23:22 CDT)
electrostatic energy
- Peter Freddolino (Wed Aug 15 2007 - 09:07:39 CDT)
- emra Heshmati (Wed Aug 15 2007 - 08:20:16 CDT)
electrostatic map render problem
- Axel Kohlmeyer (Wed Oct 18 2006 - 11:56:21 CDT)
- Matthieu.Chavent_at_edam.uhp-nancy.fr (Wed Oct 18 2006 - 09:36:14 CDT)
electrostatic potential
- John Stone (Mon Sep 29 2008 - 16:57:39 CDT)
- Raluca Mihaela ANDREI (Fri Sep 26 2008 - 09:38:52 CDT)
- Raluca Mihaela ANDREI (Wed Sep 24 2008 - 10:46:54 CDT)
- John Stone (Wed Sep 24 2008 - 10:50:29 CDT)
- John Stone (Sat Sep 20 2008 - 02:19:15 CDT)
- Raluca Mihaela ANDREI (Thu Sep 18 2008 - 07:33:00 CDT)
- John Stone (Tue Sep 16 2008 - 11:01:18 CDT)
- Raluca Mihaela ANDREI (Tue Sep 16 2008 - 03:28:02 CDT)
- John Stone (Wed Dec 13 2006 - 15:56:25 CST)
- Axel Kohlmeyer (Wed Dec 13 2006 - 15:11:27 CST)
- ivana adamovic (Wed Dec 13 2006 - 14:15:09 CST)
Electrostatic potential mapping
- John Stone (Mon Nov 15 2004 - 15:40:21 CST)
- Patti Schaefer (Mon Nov 15 2004 - 15:28:15 CST)
electrostatic potential maps in vmd
- Andrei A Golosov (Fri Mar 10 2006 - 12:17:50 CST)
- John Stone (Fri Mar 10 2006 - 11:24:47 CST)
- Andrei A Golosov (Fri Mar 10 2006 - 10:52:14 CST)
electrostatic potential maps.
- Guanglei Cui (Wed Jun 08 2011 - 10:56:40 CDT)
- John Stone (Wed Apr 06 2011 - 16:39:41 CDT)
- John Stone (Wed Apr 06 2011 - 16:23:13 CDT)
- Raul Araya (Wed Apr 06 2011 - 13:13:58 CDT)
element Si
- Axel Kohlmeyer (Fri Jul 09 2004 - 12:11:46 CDT)
- Peter Deák (Fri Jul 09 2004 - 06:59:03 CDT)
eliminate atoms from psf and pdb files
- Axel Kohlmeyer (Tue Jan 06 2009 - 12:33:37 CST)
- Peter Freddolino (Tue Jan 06 2009 - 11:51:45 CST)
- caterinabernini_at_unisi.it (Tue Jan 06 2009 - 11:40:15 CST)
ellipsoidal particles
- Aleksei Aksimentiev (Mon May 03 2010 - 16:14:13 CDT)
- John Stone (Mon May 03 2010 - 15:05:03 CDT)
- Axel Kohlmeyer (Sun May 02 2010 - 15:08:54 CDT)
- Germain Vallverdu (Sun May 02 2010 - 14:10:43 CDT)
Elliptic molecules
- Erik Abrahamsson (Tue Jun 30 2009 - 18:25:41 CDT)
- John Stone (Fri Jul 16 2004 - 10:09:06 CDT)
- Olaf Lenz (Fri Jul 16 2004 - 09:07:36 CDT)
- John Stone (Fri Jul 16 2004 - 00:58:02 CDT)
- Andrew Dalke (Thu Jul 15 2004 - 15:35:47 CDT)
- John Stone (Thu Jul 15 2004 - 10:40:55 CDT)
- Olaf Lenz (Thu Jul 15 2004 - 09:56:21 CDT)
- Leonid Paramonov (Thu Jul 15 2004 - 07:10:01 CDT)
embed VMD in web page
- Axel Kohlmeyer (Wed Feb 25 2009 - 12:03:34 CST)
- Xunlei Wu (Wed Feb 25 2009 - 11:21:39 CST)
Empty Extension menu on OSX
- John Stone (Mon Dec 09 2002 - 17:35:32 CST)
- Pascal Mercier (Mon Dec 09 2002 - 17:24:52 CST)
enable direct rendering DRI on fedora core 2
- Dr. Daniel James White PhD (Fri Jun 11 2004 - 06:50:34 CDT)
Enabling a menu on the top level
- John Stone (Wed Apr 20 2005 - 15:43:27 CDT)
- Palmer, Teresa (Wed Apr 20 2005 - 11:17:43 CDT)
enantiomers
- L. Michel Espinoza-Fonseca (Fri Jun 20 2008 - 09:10:31 CDT)
- Ed Lowe (Fri Jun 20 2008 - 08:38:06 CDT)
Energy
- John Stone (Wed Jun 03 2009 - 22:04:04 CDT)
- Axel Kohlmeyer (Wed Jun 03 2009 - 22:29:45 CDT)
- Andres Morales N (Wed Jun 03 2009 - 21:50:41 CDT)
energy calculation in VMD
- John Stone (Wed Mar 22 2006 - 16:48:08 CST)
- lily jin (Wed Mar 22 2006 - 16:41:45 CST)
energy minimization of a trajectory with vmd+namd
- Peter Freddolino (Wed Mar 08 2006 - 10:02:25 CST)
- John Stone (Wed Mar 08 2006 - 09:39:30 CST)
- L. Michel Espinoza-Fonseca (Wed Mar 08 2006 - 08:41:37 CST)
Energy plot script
- Alexandre A. Vakhrouchev (Wed May 14 2008 - 22:11:19 CDT)
entropy calculations
- L. Michel Espinoza-Fonseca (Fri Nov 21 2008 - 16:05:11 CST)
- Roman Petrenko (Fri Nov 21 2008 - 15:23:07 CST)
- Roman Petrenko (Fri Nov 21 2008 - 15:16:40 CST)
- Ioana Cozmuta (Mon Feb 23 2004 - 17:41:54 CST)
Epsilon, Rmin for copper ions
- Francesco Pietra (Sat Sep 24 2011 - 03:55:34 CDT)
equilibrating a membrane patch
- Edward Lyman (Mon Dec 08 2008 - 13:25:30 CST)
Equivalent Mouse Capabilities to Tracker CAVELib
- John Stone (Mon Feb 09 2009 - 15:24:34 CST)
- Amr Rizq (Mon Feb 09 2009 - 07:06:26 CST)
Erro compiling vmd and or fltk
- John Stone (Sun Jul 16 2000 - 14:12:10 CDT)
- mark knapp (Sun Jul 16 2000 - 13:37:04 CDT)
ERROR
- Axel Kohlmeyer (Wed Mar 09 2011 - 04:17:56 CST)
- John Stone (Wed Mar 09 2011 - 00:19:45 CST)
- vani panguluri (Wed Mar 09 2011 - 00:11:59 CST)
error - with unknown atom type +CA
- Peter Freddolino (Thu Jul 12 2007 - 21:56:32 CDT)
- shyamala (Thu Jul 12 2007 - 13:02:04 CDT)
error after changing of PYTHONPATH variable
- Axel Kohlmeyer (Fri Jul 17 2009 - 09:16:22 CDT)
- Michael Kreim (Fri Jul 17 2009 - 08:51:46 CDT)
- Axel Kohlmeyer (Fri Jul 17 2009 - 08:22:13 CDT)
- Michael Kreim (Fri Jul 17 2009 - 07:12:52 CDT)
error Autoimd
- John Stone (Wed Jun 21 2006 - 14:24:27 CDT)
- John Stone (Thu Jun 15 2006 - 15:38:23 CDT)
- Juan de Dios Lopez Castro (Thu Jun 15 2006 - 04:04:02 CDT)
Error compiling trio
- John Stone (Wed Apr 09 2003 - 10:08:53 CDT)
- Patrick Ladam (Wed Apr 09 2003 - 10:18:56 CDT)
error during creat .psf file
- John Stone (Wed Apr 05 2006 - 23:14:27 CDT)
- John Stone (Wed Apr 05 2006 - 21:47:21 CDT)
- Taeho Kim (Mon Apr 03 2006 - 03:16:01 CDT)
Error Encountered in making vmdmovie
- John Stone (Tue May 03 2005 - 09:59:45 CDT)
- Adrian Koh (Tue May 03 2005 - 02:42:00 CDT)
Error encountered when quitting VMD on the Mac
- Ben Roberts (Wed Oct 13 2010 - 12:39:07 CDT)
- Ben Roberts (Mon Sep 13 2010 - 21:12:37 CDT)
- John Stone (Mon Sep 13 2010 - 20:08:36 CDT)
- Ben Roberts (Mon Sep 13 2010 - 16:55:53 CDT)
Error generating psf files
- Peter Freddolino (Thu Sep 18 2008 - 22:45:03 CDT)
- Nd S (Thu Sep 18 2008 - 22:30:05 CDT)
- Nd S (Thu Sep 18 2008 - 22:05:07 CDT)
- Peter Freddolino (Thu Sep 18 2008 - 22:14:25 CDT)
- Peter Freddolino (Thu Sep 18 2008 - 20:18:14 CDT)
- Nd S (Thu Sep 18 2008 - 18:55:28 CDT)
Error in "measure fit"
- John Stone (Thu Oct 16 2008 - 15:43:17 CDT)
- Stephen Hicks (Sat Oct 11 2008 - 15:05:45 CDT)
Error in changing on screen options of VMD
- John Stone (Sun Jan 20 2008 - 22:54:33 CST)
- Monika Sharma (Fri Jan 18 2008 - 07:45:07 CST)
Error in coordinate information of PDB file after merging
- Axel Kohlmeyer (Wed Mar 02 2011 - 10:39:01 CST)
- nabaneeta mukhopadhyay (Wed Mar 02 2011 - 00:50:42 CST)
Error in Linux
- cheol_at_rccd.snu.ac.kr (Wed Apr 09 1997 - 05:51:13 CDT)
error in loading psf file generated from lammps data file.
- John Stone (Sun Jan 20 2008 - 20:46:28 CST)
- Dongsheng Zhang (Thu Jan 17 2008 - 16:23:27 CST)
Error in modifying and concatenating two pdb files into one [plz Help!]
- John Stone (Mon Aug 02 2004 - 09:59:02 CDT)
- Sekwan Oh (Fri Jul 30 2004 - 20:30:22 CDT)
error in movie generator
- Phelan Jr, Frederick R. Dr. (Thu Jun 02 2011 - 08:44:38 CDT)
- John Stone (Tue May 17 2011 - 10:11:16 CDT)
- Esam Tolba (Tue May 17 2011 - 03:57:06 CDT)
- Esam Tolba (Mon May 16 2011 - 10:01:27 CDT)
error in psfgen file
- Marcos Sotomayor (Thu Mar 23 2006 - 22:13:15 CST)
- Rima Chaudhuri (Thu Mar 23 2006 - 20:20:10 CST)
error in rbcg-2007.par file
- Peter Freddolino (Fri Nov 27 2009 - 19:27:37 CST)
- BIN ZHANG (Fri Nov 27 2009 - 13:15:01 CST)
error in rmsd.tcl for tutorial
- TAE BUM LEE (Sun Dec 13 2009 - 12:23:03 CST)
- John Stone (Fri Dec 11 2009 - 16:12:22 CST)
- TAE BUM LEE (Thu Dec 10 2009 - 17:42:04 CST)
- John Stone (Thu Dec 10 2009 - 10:28:16 CST)
- TAE BUM LEE (Wed Dec 09 2009 - 16:37:42 CST)
Error in running VMD on AMD64-bit machine (Fedora Core 4)
- John Stone (Mon Dec 19 2005 - 16:54:21 CST)
- Cheng, Kelvin (Mon Dec 19 2005 - 16:36:55 CST)
error in the conversion of dcd to pdb files
- Axel Kohlmeyer (Mon Jan 03 2011 - 04:58:45 CST)
- Ramya Narasimhan (Sun Jan 02 2011 - 23:50:43 CST)
- Axel Kohlmeyer (Fri Dec 31 2010 - 04:54:08 CST)
- Ramya Narasimhan (Fri Dec 31 2010 - 04:11:06 CST)
Error in visualizing the 5 prime end of DNA strand
- Bob Johnson (Mon Aug 29 2005 - 10:56:06 CDT)
Error installing VMD 1.8.5.
- John Stone (Mon Oct 23 2006 - 12:13:35 CDT)
- Lechuga, Javier (Mon Oct 23 2006 - 02:29:06 CDT)
Error loading .cor files from CHARMM using dcd
- John Stone (Wed Feb 04 2004 - 13:02:45 CST)
- Tjaart de Beer (Fri Jan 30 2004 - 06:58:22 CST)
error loading dcd file on Windows XP
- Jindal Shah (Fri Mar 17 2006 - 16:36:58 CST)
- John Stone (Fri Mar 17 2006 - 16:28:17 CST)
- Jindal Shah (Thu Mar 16 2006 - 18:44:30 CST)
- John Stone (Thu Mar 16 2006 - 15:30:43 CST)
- Jindal Shah (Thu Mar 16 2006 - 15:18:24 CST)
error loading pdb files
- John Stone (Tue Jan 24 2006 - 11:13:39 CST)
- John Stone (Tue Jan 24 2006 - 10:09:12 CST)
- Dean Appling (Tue Jan 24 2006 - 08:59:08 CST)
Error message disappears before I can read it!
- Robert Coridan (Thu Jun 02 2005 - 13:51:29 CDT)
- John Stone (Thu Jun 02 2005 - 12:56:48 CDT)
- Robert Coridan (Thu Jun 02 2005 - 11:21:35 CDT)
error message from IED
- John Stone (Wed Mar 02 2005 - 10:02:54 CST)
- Vlad Cojocaru (Wed Mar 02 2005 - 08:55:06 CST)
Error message in VMD console when I try to switch to Python mode.
- Katherine Parra (Tue Jul 22 2008 - 11:07:56 CDT)
- John Stone (Thu Jul 17 2008 - 16:50:42 CDT)
- Katherine Parra (Thu Jul 17 2008 - 09:30:22 CDT)
- Katherine Parra (Thu Jul 17 2008 - 09:13:14 CDT)
- John Stone (Thu Jul 17 2008 - 09:21:29 CDT)
- Katherine Parra (Wed Jul 16 2008 - 14:06:06 CDT)
- John Stone (Wed Jul 16 2008 - 14:19:51 CDT)
- Katherine Parra (Wed Jul 16 2008 - 13:16:28 CDT)
- John Stone (Wed Jul 16 2008 - 13:28:55 CDT)
error message occurred in RMSD Trajectory Tool
- Margaret Shun Cheung (Thu Jun 22 2006 - 14:56:36 CDT)
- John Stone (Thu Jun 22 2006 - 14:36:46 CDT)
- John Stone (Thu Jun 22 2006 - 13:53:37 CDT)
- Margaret Shun Cheung (Thu Jun 22 2006 - 11:28:10 CDT)
error message using gofr
- OMAR NABEEL ALY DEMERDASH (Mon Jan 08 2007 - 15:17:42 CST)
- John Stone (Mon Jan 08 2007 - 11:29:56 CST)
- Axel Kohlmeyer (Fri Jan 05 2007 - 18:09:22 CST)
- OMAR NABEEL ALY DEMERDASH (Fri Jan 05 2007 - 16:03:12 CST)
error messages "*** glibc detected *** free(): invalid pointer"
- Yinglong Miao (Wed Feb 18 2009 - 17:32:26 CST)
- John Stone (Wed Feb 18 2009 - 17:43:14 CST)
- John Stone (Wed Feb 18 2009 - 09:44:02 CST)
- John Stone (Mon Feb 16 2009 - 13:14:31 CST)
- Axel Kohlmeyer (Mon Feb 16 2009 - 12:26:19 CST)
- Yinglong Miao (Mon Feb 16 2009 - 12:44:16 CST)
- Yinglong Miao (Mon Feb 16 2009 - 12:10:11 CST)
- Yinglong Miao (Mon Feb 16 2009 - 11:51:38 CST)
- John Stone (Mon Feb 16 2009 - 11:43:44 CST)
- John Stone (Mon Feb 16 2009 - 11:54:45 CST)
- Yinglong Miao (Mon Feb 16 2009 - 11:23:32 CST)
Error on DNA
- Mario Valle (Wed Oct 04 2006 - 00:31:50 CDT)
- John Stone (Tue Oct 03 2006 - 23:52:24 CDT)
- Mario Valle (Mon Oct 02 2006 - 02:59:08 CDT)
error processing angles
- John Stone (Mon Apr 26 2010 - 19:30:05 CDT)
- Robert Brunner (Mon Apr 26 2010 - 19:12:07 CDT)
- muniyamuthu.raviprasad_at_ndsu.edu (Mon Apr 26 2010 - 18:57:55 CDT)
- Robert Brunner (Mon Apr 26 2010 - 18:32:44 CDT)
- muniyamuthu.raviprasad_at_ndsu.edu (Fri Apr 23 2010 - 17:36:32 CDT)
Error processing bonds
- Gianluca Interlandi (Fri Apr 24 2009 - 14:09:59 CDT)
- Gianluca Interlandi (Fri Apr 24 2009 - 11:12:31 CDT)
- Gianluca Interlandi (Fri Apr 24 2009 - 10:15:38 CDT)
- Axel Kohlmeyer (Fri Apr 24 2009 - 08:42:34 CDT)
- John Stone (Fri Apr 24 2009 - 08:03:21 CDT)
- Gianluca Interlandi (Fri Apr 24 2009 - 01:41:07 CDT)
Error psfgen
- Surendra Negi (Thu Oct 28 2004 - 20:07:14 CDT)
error python
- John Stone (Mon Sep 13 2004 - 10:02:20 CDT)
- effekri_at_infinito.it (Mon Sep 13 2004 - 02:18:25 CDT)
Error running IED
- Manish (Tue Oct 18 2011 - 14:33:15 CDT)
- Manish (Tue Oct 18 2011 - 13:39:09 CDT)
Error running IED with VMD
- Axel Kohlmeyer (Fri Oct 14 2011 - 10:09:16 CDT)
- Manish (Fri Oct 14 2011 - 08:47:17 CDT)
Error starting second VMD
- John Stone (Tue Apr 19 2011 - 22:26:56 CDT)
- Jérôme Hénin (Mon Mar 28 2011 - 17:33:59 CDT)
- John Stone (Mon Mar 28 2011 - 16:04:34 CDT)
- Jérôme Hénin (Fri Mar 25 2011 - 09:19:59 CDT)
- John Stone (Fri Mar 25 2011 - 09:05:39 CDT)
- Jérôme Hénin (Fri Mar 25 2011 - 04:40:04 CDT)
- John Stone (Thu Mar 24 2011 - 21:02:06 CDT)
- Jérôme Hénin (Wed Mar 23 2011 - 09:40:20 CDT)
error using Molecule.save() (vmd python)
- Axel Kohlmeyer (Tue Jul 21 2009 - 08:43:21 CDT)
- Michael Kreim (Tue Jul 21 2009 - 06:49:44 CDT)
error using Namdenergy
- John Stone (Thu Jun 22 2006 - 15:06:12 CDT)
- Peter Freddolino (Wed Jun 21 2006 - 20:15:21 CDT)
- Chandra Ramananjara (Wed Jun 21 2006 - 19:55:01 CDT)
- Chandra Ramananjara (Wed Jun 21 2006 - 21:17:13 CDT)
- Peter Freddolino (Wed Jun 21 2006 - 17:17:17 CDT)
- Chandra Ramananjara (Wed Jun 21 2006 - 15:04:19 CDT)
Error using namdstat.tcl script
- S.K. Ghosh (Mon Jun 30 2008 - 10:51:20 CDT)
- Axel Kohlmeyer (Mon Jun 30 2008 - 11:42:26 CDT)
Error vmd and Nvidia Graphik Card
- John Stone (Tue Mar 09 2010 - 10:37:25 CST)
- Christian Wohlschlager (Tue Mar 09 2010 - 10:19:47 CST)
Error when compiling Plugins from source code
- John Stone (Thu Jan 25 2007 - 14:49:56 CST)
- Epiphaniou, Nicholas (Thu Jan 25 2007 - 04:57:09 CST)
error when making a movie
- John Stone (Wed Aug 06 2003 - 10:38:57 CDT)
- Ioana Cozmuta (Wed Aug 06 2003 - 00:53:22 CDT)
- John Stone (Tue Aug 05 2003 - 23:00:52 CDT)
- Ioana Cozmuta (Tue Aug 05 2003 - 22:32:21 CDT)
- John Stone (Tue Aug 05 2003 - 21:59:45 CDT)
- Ioana Cozmuta (Tue Aug 05 2003 - 18:04:15 CDT)
Error when running ied.py
- Joseph Fernandez (Fri Jul 08 2005 - 09:50:59 CDT)
error when solvating a system
- L. Michel Espinoza-Fonseca (Mon Aug 21 2006 - 20:49:27 CDT)
error when solvating protein/vmd1.8.4a22
- John Stone (Tue Nov 08 2005 - 15:24:57 CST)
- amodzelewska_at_iimcb.gov.pl (Tue Nov 08 2005 - 08:44:30 CST)
- John Stone (Tue Nov 08 2005 - 10:00:58 CST)
- Anna Modzelewska (Mon Nov 07 2005 - 07:31:59 CST)
error while generating a tetramer using transformation matrix
- Himanshu Khandelia (Wed Jun 27 2007 - 04:00:50 CDT)
- Ruchi Sachdeva (Wed Jun 27 2007 - 01:15:28 CDT)
error while loading shared libraries: libGLU.so.1
- Cheri M Turman (Tue Oct 26 2004 - 15:12:07 CDT)
- John Stone (Tue Oct 26 2004 - 13:43:49 CDT)
- Cheri M Turman (Tue Oct 26 2004 - 13:37:56 CDT)
- John Stone (Tue Oct 26 2004 - 12:38:06 CDT)
- Cheri M Turman (Tue Oct 26 2004 - 12:21:29 CDT)
- John Stone (Thu Oct 21 2004 - 15:20:33 CDT)
- Cheri M Turman (Thu Oct 21 2004 - 14:27:46 CDT)
- John Stone (Thu Oct 21 2004 - 13:35:23 CDT)
- Cheri M Turman (Thu Oct 21 2004 - 13:24:12 CDT)
Error while running scripts: terminate called after throwing an instance of 'std::bad_alloc'
- Arneh Babakhani (Mon Feb 05 2007 - 10:59:04 CST)
- John Stone (Mon Feb 05 2007 - 10:04:31 CST)
- Arneh Babakhani (Sun Feb 04 2007 - 21:58:19 CST)
- Axel Kohlmeyer (Sat Feb 03 2007 - 06:31:49 CST)
- John Stone (Sat Feb 03 2007 - 00:45:58 CST)
- Arneh Babakhani (Fri Feb 02 2007 - 20:04:29 CST)
- John Stone (Fri Feb 02 2007 - 16:21:44 CST)
- Arneh Babakhani (Fri Feb 02 2007 - 16:16:04 CST)
Error while running steered MD script
- Ban Arn (Fri Feb 03 2012 - 03:07:34 CST)
- John Stone (Thu Feb 02 2012 - 18:18:20 CST)
- Ban Arn (Thu Feb 02 2012 - 17:29:02 CST)
- John Stone (Thu Feb 02 2012 - 17:10:01 CST)
- Ban Arn (Thu Feb 02 2012 - 10:24:18 CST)
ERROR while using PSF builder
- John Stone (Mon Feb 07 2011 - 20:25:33 CST)
- vani panguluri (Mon Feb 07 2011 - 11:29:09 CST)
Error with stride
- John Stone (Tue Oct 16 2007 - 09:27:10 CDT)
- Per Jr. Greisen (Tue Oct 16 2007 - 09:01:21 CDT)
error with top2psf
- Marc Baaden (Thu Apr 22 2004 - 02:52:23 CDT)
- Axel Kohlmeyer (Wed Apr 21 2004 - 15:47:17 CDT)
- John Stone (Wed Apr 21 2004 - 13:40:22 CDT)
- davide\.ruffoni (Wed Apr 21 2004 - 06:04:51 CDT)
ERROR) Error reading bond information.
- Axel Kohlmeyer (Fri Sep 25 2009 - 12:16:30 CDT)
- Luca Gelisio (Fri Sep 25 2009 - 11:55:11 CDT)
- John Stone (Fri Sep 25 2009 - 11:03:47 CDT)
- Axel Kohlmeyer (Fri Sep 25 2009 - 10:02:52 CDT)
- Luca Gelisio (Fri Sep 25 2009 - 09:25:55 CDT)
- Axel Kohlmeyer (Fri Sep 25 2009 - 09:11:49 CDT)
- Luca Gelisio (Fri Sep 25 2009 - 09:10:23 CDT)
- Luca Gelisio (Fri Sep 25 2009 - 09:03:41 CDT)
- Axel Kohlmeyer (Fri Sep 25 2009 - 07:55:47 CDT)
- John Stone (Fri Sep 25 2009 - 07:41:11 CDT)
- Luca Gelisio (Fri Sep 25 2009 - 05:40:17 CDT)
ERROR) Failed to create Surf atom radii input file
- John Stone (Wed Dec 29 2004 - 18:14:08 CST)
- dieter blaas (Wed Dec 29 2004 - 02:42:54 CST)
- Brian Bennion (Tue Dec 28 2004 - 11:16:46 CST)
- John Stone (Tue Dec 28 2004 - 10:46:02 CST)
- Axel Kohlmeyer (Tue Dec 28 2004 - 10:14:27 CST)
- dieter blaas (Tue Dec 28 2004 - 10:02:40 CST)
- Axel Kohlmeyer (Tue Dec 28 2004 - 08:37:37 CST)
- dieter blaas (Tue Dec 28 2004 - 04:14:50 CST)
ERROR) measure gofr: bad frame range given. max
- Axel Kohlmeyer (Mon Jan 23 2012 - 16:25:37 CST)
- jeela keel (Mon Jan 23 2012 - 15:06:10 CST)
- Axel Kohlmeyer (Mon Jan 23 2012 - 14:13:02 CST)
- Axel Kohlmeyer (Mon Jan 23 2012 - 12:51:41 CST)
- jeela keel (Mon Jan 23 2012 - 12:55:54 CST)
- jeela keel (Mon Jan 23 2012 - 12:45:22 CST)
- Axel Kohlmeyer (Mon Jan 23 2012 - 11:53:04 CST)
- Axel Kohlmeyer (Mon Jan 23 2012 - 11:55:22 CST)
- jeela keel (Mon Jan 23 2012 - 11:35:59 CST)
- jeela keel (Mon Jan 23 2012 - 11:18:04 CST)
- John Stone (Mon Jan 23 2012 - 10:01:36 CST)
- jeela keel (Mon Jan 23 2012 - 09:56:43 CST)
- Axel Kohlmeyer (Mon Jan 23 2012 - 09:29:37 CST)
- jeela keel (Mon Jan 23 2012 - 08:09:54 CST)
- jeela keel (Fri Jan 20 2012 - 14:43:13 CST)
ERROR) Tcl startup error: Can't find a usable init.tcl in the following directories:
- John Stone (Wed Feb 15 2012 - 10:08:38 CST)
- Urszula Uciechowska (Wed Feb 15 2012 - 07:59:30 CST)
- Urszula Uciechowska (Wed Feb 15 2012 - 01:48:52 CST)
Error, Tk option requires Tcl
- John Stone (Fri Nov 11 2005 - 13:55:05 CST)
- zhurx (Fri Nov 11 2005 - 00:14:00 CST)
error. Autoimd
- John Stone (Thu Jun 01 2006 - 12:46:38 CDT)
- Juan de Dios Lopez Castro (Thu Jun 01 2006 - 05:21:51 CDT)
Error: failed on end of segment with RBCG
- Peter Freddolino (Sun Nov 15 2009 - 08:46:47 CST)
- Francesco Pietra (Sun Nov 15 2009 - 03:18:57 CST)
ERROR: graphics: color index value '1057' out of range
- Jervis Chu (Sun Feb 27 2011 - 08:41:00 CST)
Errors compiling VMD on 1.8.3 on Solaris x86
- John Stone (Fri Apr 01 2005 - 18:20:20 CST)
- John Stone (Fri Apr 01 2005 - 18:10:36 CST)
- Koo Kee Kiat (Fri Apr 01 2005 - 00:17:45 CST)
errors with using surf and MSMS representations
- Yinglong Miao (Tue May 27 2008 - 17:11:54 CDT)
- John Stone (Tue May 27 2008 - 16:13:41 CDT)
- John Stone (Tue May 27 2008 - 15:12:35 CDT)
- Yinglong Miao (Tue May 27 2008 - 14:53:54 CDT)
eTimeBanker Bill Pay Service
- Bankf of the West (Wed Aug 24 2005 - 11:02:50 CDT)
euler angles
- John Stone (Wed Mar 22 2006 - 13:30:55 CST)
- pinisetty dinesh (Tue Mar 21 2006 - 19:07:47 CST)
Euro QSAR 2004
- Ahmet Bakan (Sun Sep 05 2004 - 15:42:27 CDT)
Example tutorial
- snoze pa (Mon Apr 14 2008 - 18:38:03 CDT)
Exceeded maximum number of bonds
- Axel Kohlmeyer (Thu May 29 2008 - 13:54:24 CDT)
- Demian Riccardi (Thu May 29 2008 - 13:18:09 CDT)
Exceeded maximum number of bonds (8)
- John Stone (Sun Mar 31 2002 - 16:38:11 CST)
- Lu Yang (Sun Mar 31 2002 - 13:19:55 CST)
exclude residues
- Wei Chen (Thu Jun 30 2005 - 16:39:51 CDT)
- Axel Kohlmeyer (Thu Jun 30 2005 - 15:54:32 CDT)
- John Stone (Thu Jun 30 2005 - 13:40:35 CDT)
- John (Thu Jun 30 2005 - 11:42:09 CDT)
Exelent quality watch
- Landon Beaver (Wed Oct 17 2007 - 17:56:35 CDT)
experience using VMD with 3-D printers?
- Karsten Suhre (Tue Feb 10 2004 - 06:50:59 CST)
- John Stone (Mon Feb 09 2004 - 10:49:31 CST)
- Karsten Suhre (Mon Feb 09 2004 - 08:30:25 CST)
Experience with Asus Netbook
- TRINH Minh Hieu (Thu Sep 30 2010 - 01:53:08 CDT)
- Gianluca Interlandi (Wed Sep 29 2010 - 18:38:32 CDT)
- Richard Cook (Wed Sep 29 2010 - 16:50:52 CDT)
- Gianluca Interlandi (Wed Sep 29 2010 - 16:54:50 CDT)
- Gianluca Interlandi (Wed Sep 29 2010 - 16:34:24 CDT)
- TRINH Minh Hieu (Wed Sep 29 2010 - 16:15:18 CDT)
- Gianluca Interlandi (Wed Sep 29 2010 - 15:18:53 CDT)
- TRINH Minh Hieu (Wed Sep 29 2010 - 12:59:46 CDT)
- Gianluca Interlandi (Tue Sep 28 2010 - 15:19:47 CDT)
- Thomas C. Bishop (Tue Sep 28 2010 - 14:20:46 CDT)
- John Stone (Tue Sep 28 2010 - 10:45:08 CDT)
- Gianluca Interlandi (Sun Sep 26 2010 - 14:01:40 CDT)
explicit secondary structure
- John Stone (Tue Nov 08 2005 - 09:55:11 CST)
- William Sheffler (Tue Nov 08 2005 - 00:21:29 CST)
Export problem Licorice to STL
- Kevin Smith (Mon Oct 03 2005 - 13:16:07 CDT)
- John Stone (Mon Oct 03 2005 - 11:13:07 CDT)
- Kevin Smith (Mon Oct 03 2005 - 10:50:53 CDT)
export Ramachandran datas
- Jianhui Tian (Thu Mar 15 2007 - 17:11:27 CDT)
- John Stone (Thu Mar 15 2007 - 16:23:28 CDT)
- Jianhui Tian (Thu Mar 15 2007 - 16:16:21 CDT)
Export VMD graphics to POV-Ray
- Axel Kohlmeyer (Fri Jan 11 2008 - 11:59:04 CST)
- Igor Schapiro (Fri Jan 11 2008 - 08:22:13 CST)
Exporting a protein surface into a mesh (plain text file)
- John Stone (Mon Oct 09 2006 - 12:18:33 CDT)
- Emmanuel Levy (Mon Oct 09 2006 - 11:59:57 CDT)
exporting marching cubes data from QuickSurf
- John Stone (Wed Mar 21 2012 - 10:39:17 CDT)
- Zhe Wu (Wed Mar 21 2012 - 10:02:16 CDT)
- John Stone (Fri Mar 02 2012 - 15:47:41 CST)
- Zhe Wu (Fri Mar 02 2012 - 15:04:18 CST)
- John Stone (Thu Mar 01 2012 - 22:18:48 CST)
- Zhe Wu (Thu Mar 01 2012 - 21:40:11 CST)
Exporting VMD images to Alias
- Andrew Dalke (Thu Jul 24 1997 - 14:28:40 CDT)
exporting xyz file
- Axel Kohlmeyer (Thu Jul 12 2007 - 10:37:40 CDT)
- Bhaskar Jyoti Borah (Thu Jul 12 2007 - 11:19:25 CDT)
- Axel Kohlmeyer (Thu Jul 12 2007 - 09:58:32 CDT)
- Bhaskar Jyoti Borah (Thu Jul 12 2007 - 01:38:58 CDT)
extended xyz
- John Stone (Wed May 31 2006 - 16:42:07 CDT)
- John Stone (Wed May 31 2006 - 16:38:03 CDT)
- Ioana Cozmuta (Fri May 26 2006 - 10:57:03 CDT)
Extensions menu is blank
- Janet Jacobsen (Tue Sep 09 2008 - 12:07:24 CDT)
- John Stone (Tue Sep 09 2008 - 10:52:00 CDT)
- Janet Jacobsen (Mon Sep 08 2008 - 18:46:07 CDT)
Extensions question
- John Stone (Wed Sep 01 2004 - 13:45:20 CDT)
- Troy Wymore (Wed Sep 01 2004 - 11:28:31 CDT)
Extensions to the selection language
- Olaf Lenz (Thu Jul 22 2004 - 11:08:38 CDT)
external ???
- John Stone (Thu Feb 02 2006 - 10:06:02 CST)
- Damien Touraine (Thu Feb 02 2006 - 09:45:11 CST)
external field application
- Axel Kohlmeyer (Mon Jan 02 2012 - 12:21:06 CST)
- sarah k (Mon Jan 02 2012 - 06:22:10 CST)
- Axel Kohlmeyer (Sun Jan 01 2012 - 11:11:24 CST)
- sarah k (Sun Jan 01 2012 - 03:57:21 CST)
external force
- John Stone (Tue Oct 24 2006 - 13:11:11 CDT)
- Al-Rawi, Ahlam (Tue Oct 24 2006 - 11:41:54 CDT)
- Al-Rawi, Ahlam (Wed Oct 18 2006 - 19:33:51 CDT)
External renderer not rendering colors from volumetric data
- Michael Geoffrey Klein (Wed Mar 25 2009 - 09:35:25 CDT)
- John Stone (Wed Mar 25 2009 - 09:38:18 CDT)
- Höfling Martin (Wed Mar 25 2009 - 08:34:24 CDT)
Extra bond in TIP3 water
- Axel Kohlmeyer (Wed Mar 09 2011 - 06:04:00 CST)
- Julie Grouleff (Wed Mar 09 2011 - 04:56:53 CST)
extra characters
- kirtana S (Tue Sep 20 2011 - 10:54:07 CDT)
Extra lines shown in trajectories in VMD
- John Stone (Wed Jul 21 2010 - 13:08:34 CDT)
- Elias Ahadi (Wed Jul 21 2010 - 12:26:08 CDT)
extrabonds
- John Stone (Wed Aug 24 2011 - 10:21:28 CDT)
- Ling Wu (Wed Aug 24 2011 - 10:08:41 CDT)
- John Stone (Tue Aug 23 2011 - 17:05:37 CDT)
- Ling Wu (Tue Aug 23 2011 - 16:13:53 CDT)
extract centers et radii of beads model
- John Stone (Mon Sep 15 2008 - 16:11:20 CDT)
- Matthieu Chavent (Mon Sep 15 2008 - 13:25:13 CDT)
extract euler angles from transformation matrix?
- John Stone (Wed Dec 14 2005 - 10:11:34 CST)
- Samuel Flores (Tue Dec 13 2005 - 15:43:03 CST)
Extract parameters of Shape-based Coarse Graining model from AA simulation
- dongsheng lei (Thu Oct 23 2008 - 04:46:50 CDT)
- Anton Arkhipov (Wed Oct 22 2008 - 10:28:02 CDT)
- dongsheng lei (Wed Oct 22 2008 - 01:54:54 CDT)
Extract specific frames from trajectory
- Roman Petrenko (Thu Apr 01 2010 - 17:19:17 CDT)
- Cathal Leahy (Thu Apr 01 2010 - 10:40:19 CDT)
extracting distances
- Andrew Dalke (Thu Dec 10 1998 - 20:06:25 CST)
- David Horita (Wed Dec 09 1998 - 17:00:54 CST)
Extracting IR spectra from trajectories
- Axel Kohlmeyer (Fri Oct 19 2007 - 15:30:50 CDT)
- Cesar Luis Avila (Fri Oct 19 2007 - 10:08:45 CDT)
extracting values from a dx file
- John Stone (Mon Mar 27 2006 - 00:00:48 CST)
- Axel Kohlmeyer (Thu Mar 23 2006 - 20:22:21 CST)
- L. Michel Espinoza-Fonseca (Thu Mar 23 2006 - 07:45:35 CST)
extraction of bound water molecules in a trajectory
- Thomas C. Bishop (Thu Oct 23 2008 - 08:46:59 CDT)
- mon_sharma_at_research.iiit.ac.in (Thu Oct 23 2008 - 04:39:07 CDT)
Eye position / camera position
- John Stone (Thu Jun 09 2005 - 16:51:33 CDT)
- Breght Boschker (Thu Jun 02 2005 - 05:27:49 CDT)
fading rep scripts
- John Stone (Tue Jun 13 2006 - 13:42:31 CDT)
- John Stone (Tue Jun 13 2006 - 13:28:10 CDT)
- John Stone (Tue Jun 13 2006 - 12:53:17 CDT)
- John Stone (Tue Jun 13 2006 - 11:16:03 CDT)
- Brian Bennion (Mon Jun 12 2006 - 17:48:21 CDT)
- John Stone (Mon Jun 12 2006 - 17:43:59 CDT)
- Brian Bennion (Mon Jun 12 2006 - 16:41:38 CDT)
Failure of AutoSCFBuilder to recognize all monomers
- Francesco Pietra (Sun Jan 03 2010 - 04:54:24 CST)
Failure to open PDB files
- Axel Kohlmeyer (Mon Aug 25 2008 - 14:52:38 CDT)
- hzf101_at_psu.edu (Mon Aug 25 2008 - 13:12:52 CDT)
Failure with AutoPSF (PDB has x, y, z zero)
- Peter Freddolino (Sat Dec 05 2009 - 08:21:29 CST)
- Francesco Pietra (Fri Dec 04 2009 - 12:35:12 CST)
Famous repl1ca w4tches r0lex Cartier Bvlgari
- Shari Chin (Fri Apr 20 2007 - 23:08:24 CDT)
fancy representations for lipids?
- Mauricio Carrillo Tripp (Mon Oct 03 2005 - 14:23:04 CDT)
- John Stone (Mon Oct 03 2005 - 11:45:35 CDT)
- nsapay_at_ibcp.fr (Wed Sep 28 2005 - 18:22:51 CDT)
Fast routines for distance evaluations using PBC.
- John Stone (Fri May 11 2007 - 13:46:39 CDT)
- John Stone (Fri May 11 2007 - 13:15:27 CDT)
- Arturas Ziemys (Fri May 11 2007 - 11:52:49 CDT)
fasta2pdb
- Peter Freddolino (Mon Nov 10 2008 - 17:30:19 CST)
- Eric H. Lee (Mon Nov 10 2008 - 15:16:00 CST)
- Roman Petrenko (Mon Nov 10 2008 - 14:33:24 CST)
Faster secondary structure assignment
- John Stone (Tue Aug 31 2010 - 10:57:35 CDT)
- Jérôme Hénin (Tue Aug 31 2010 - 10:38:49 CDT)
- John Stone (Mon Aug 30 2010 - 11:57:25 CDT)
- Jérôme Hénin (Mon Aug 30 2010 - 11:28:45 CDT)
FATAL ERROR: ABNORMAL EOF FOUND - buffer=*0 0*
- Chuck (Mon Feb 23 2009 - 15:52:05 CST)
favorite VMD material settings?
- John Stone (Fri Aug 11 2006 - 14:47:18 CDT)
FC4 stereo problems
- John Stone (Thu Jul 28 2005 - 12:55:24 CDT)
- John Stone (Wed Jul 27 2005 - 18:59:05 CDT)
- Cameron Mura (Wed Jul 27 2005 - 18:03:58 CDT)
feature request
- John Stone (Wed Feb 23 2011 - 15:45:48 CST)
- Francesco Oteri (Wed Feb 23 2011 - 15:37:34 CST)
- Axel Kohlmeyer (Sun Oct 19 2008 - 13:26:42 CDT)
- Tamara Rogers (Sun Oct 19 2008 - 12:38:18 CDT)
Feature request for vmd 1.8
- Justin Gullingsrud (Mon Oct 28 2002 - 09:53:56 CST)
- Stéphane Teletchéa (Mon Oct 28 2002 - 04:10:55 CST)
Feature request: modify several representations at the same time
- Luis Gracia (Wed Sep 29 2004 - 15:37:06 CDT)
Feature request: output to Blender 3D modelling software
- John Stone (Wed Jul 12 2006 - 00:07:45 CDT)
- John Stone (Tue Jul 11 2006 - 16:18:23 CDT)
- Ralph Jimenez (Tue Jul 11 2006 - 14:19:30 CDT)
- Sabuj Pattanayek (Tue Jul 11 2006 - 13:19:33 CDT)
- John Stone (Tue Jul 11 2006 - 11:06:43 CDT)
- Ralph Jimenez (Tue Jul 11 2006 - 10:32:31 CDT)
Feature request: PBC from CHARMM DCD files
- John Stone (Thu Oct 02 2003 - 16:49:14 CDT)
- Tyler Luchko (Thu Oct 02 2003 - 13:08:27 CDT)
fedora core 4 install problem
- Michal Kolinski (Mon Dec 12 2005 - 05:06:08 CST)
- John Stone (Fri Dec 09 2005 - 09:49:22 CST)
- Michal Kolinski (Fri Dec 09 2005 - 05:06:24 CST)
fedora core 5 and VMD 1.8.4
- John Stone (Tue Apr 25 2006 - 23:54:27 CDT)
- Brian Kidd (Tue Apr 25 2006 - 23:02:17 CDT)
- John Stone (Tue Apr 25 2006 - 22:51:55 CDT)
- Brian Kidd (Tue Apr 25 2006 - 20:06:50 CDT)
- John Stone (Tue Apr 25 2006 - 19:20:27 CDT)
- Brian Kidd (Tue Apr 25 2006 - 18:37:32 CDT)
feedback on pc-over-ip technology?
- John Stone (Mon Sep 08 2008 - 11:07:09 CDT)
- Tru Huynh (Mon Sep 08 2008 - 10:40:24 CDT)
Feedback wanted from Linux VMD users with ATI/AMD graphics chipsets
- John Stone (Fri Nov 11 2011 - 16:13:14 CST)
- Gianluca Interlandi (Fri Nov 11 2011 - 13:01:17 CST)
- John Stone (Fri Nov 11 2011 - 12:42:32 CST)
- Gianluca Interlandi (Fri Nov 11 2011 - 12:30:08 CST)
- John Stone (Fri Nov 11 2011 - 10:19:21 CST)
- Andrew Jewett (Thu Nov 03 2011 - 15:56:37 CDT)
- Andrew Jewett (Thu Nov 03 2011 - 16:07:46 CDT)
- John Stone (Mon Oct 31 2011 - 10:12:15 CDT)
FEP Energy very high: Mutual exclusion of atoms
- Nitin Bhardwaj (Tue Nov 07 2006 - 17:29:49 CST)
few colors in new ribbons representation - raytrace output
- John Stone (Sat Jan 31 2004 - 16:47:43 CST)
- John Stone (Fri Jan 30 2004 - 00:57:40 CST)
- Charles_at_Schwieters.org (Thu Jan 29 2004 - 21:31:23 CST)
- John Stone (Thu Jan 29 2004 - 20:21:53 CST)
- Charles_at_Schwieters.org (Thu Jan 29 2004 - 17:40:15 CST)
ffTK in the just released VMD 1.9.1
- JC Gumbart (Sat Feb 04 2012 - 15:04:05 CST)
FFTK plugin: in which order should the components be run?
- Mayne, Christopher G (Tue May 22 2012 - 11:00:41 CDT)
- Wang Yi (Mon May 21 2012 - 08:47:10 CDT)
- Francesco Pietra (Mon May 21 2012 - 04:20:58 CDT)
fglrx driver workaround?
- John Stone (Wed May 18 2005 - 11:15:59 CDT)
- John Stone (Wed May 18 2005 - 11:03:36 CDT)
- Gyimesi Gergely (Tue May 17 2005 - 14:19:07 CDT)
- Sabuj Pattanayek (Tue May 17 2005 - 14:15:47 CDT)
- John Stone (Mon May 16 2005 - 19:51:04 CDT)
- Gyimesi Gergely (Sun May 15 2005 - 10:16:08 CDT)
- Alec Robertson (Thu Mar 31 2005 - 10:18:45 CST)
- John Stone (Thu Mar 31 2005 - 10:12:55 CST)
- Alec Robertson (Thu Mar 31 2005 - 09:53:21 CST)
FieldLines
- John Stone (Wed Feb 13 2008 - 14:34:04 CST)
- Axel Kohlmeyer (Tue Feb 12 2008 - 09:53:36 CST)
- Mary Karpen (Tue Feb 12 2008 - 07:34:42 CST)
fiiting
- Justin Gullingsrud (Mon May 27 2002 - 12:25:44 CDT)
- Justin Gullingsrud (Mon May 27 2002 - 10:24:14 CDT)
- Vlad Cojocaru (Mon May 27 2002 - 09:30:59 CDT)
file "top_all22_prot.inp"
- Axel Kohlmeyer (Wed Feb 07 2007 - 09:49:39 CST)
- Hai-Jun Su (Tue Feb 06 2007 - 20:26:53 CST)
File as video
- Bjoern Olausson (Tue Jul 05 2011 - 03:33:13 CDT)
- sajad falsafi (Tue Jul 05 2011 - 03:25:15 CDT)
- safron saif (Tue Jul 05 2011 - 00:02:36 CDT)
file bigger than 2GB
- John Stone (Thu Jun 01 2006 - 12:44:28 CDT)
- snoze pa (Thu Jun 01 2006 - 10:35:04 CDT)
File conversion for from Amber to Charmm
- Axel Kohlmeyer (Mon Jul 20 2009 - 08:54:41 CDT)
- Yogesh Aher (Mon Jul 20 2009 - 07:22:21 CDT)
- Axel Kohlmeyer (Fri Jul 17 2009 - 10:14:24 CDT)
- Axel Kohlmeyer (Fri Jul 17 2009 - 07:23:35 CDT)
- Yogesh Aher (Fri Jul 17 2009 - 04:34:55 CDT)
File format of DCD Trajectory file
- Izrailev, Sergei (Tue Sep 30 2003 - 11:21:35 CDT)
- John Stone (Mon Sep 29 2003 - 10:53:21 CDT)
- FUNG WAI KEUNG (Mon Sep 29 2003 - 01:10:13 CDT)
File owner/group settings after installing precompiled VMD.
- John Stone (Thu Dec 17 2009 - 00:24:11 CST)
- Rob (Mon Dec 14 2009 - 21:13:23 CST)
File patterns
- Justin Gullingsrud (Tue May 30 2000 - 14:00:15 CDT)
- Luis Gracia (Tue May 30 2000 - 09:58:38 CDT)
File Reader Plugin Issues
- John Stone (Mon Jul 19 2004 - 10:07:45 CDT)
- Olaf Lenz (Mon Jul 19 2004 - 06:14:29 CDT)
- John Stone (Fri Jul 16 2004 - 10:31:22 CDT)
- Olaf Lenz (Fri Jul 16 2004 - 09:40:33 CDT)
File Selector in VMD1.6a1
- John Stone (Wed Sep 13 2000 - 23:15:21 CDT)
- Surjit Dixit (Wed Sep 13 2000 - 12:03:45 CDT)
File size limits
- John Stone (Thu Aug 11 2005 - 09:57:11 CDT)
- Jayendra Balasubramanian (Thu Aug 11 2005 - 09:53:44 CDT)
file splitting
- Axel Kohlmeyer (Thu May 17 2012 - 11:11:00 CDT)
- Grace Brannigan (Thu May 17 2012 - 10:40:25 CDT)
- Axel Kohlmeyer (Thu May 17 2012 - 07:34:47 CDT)
- P.-L. Chau (Thu May 17 2012 - 07:42:58 CDT)
- P.-L. Chau (Thu May 17 2012 - 03:19:50 CDT)
File to benchmark a new GPU system
- John Stone (Mon Jul 27 2009 - 16:39:45 CDT)
- Axel Kohlmeyer (Sun Jul 26 2009 - 20:07:37 CDT)
- luc Renambot (Sun Jul 26 2009 - 18:52:30 CDT)
- Axel Kohlmeyer (Sun Jul 26 2009 - 18:22:59 CDT)
- luc Renambot (Sun Jul 26 2009 - 16:20:28 CDT)
file type specification question
- John Stone (Mon Apr 19 2004 - 18:06:03 CDT)
- John Stone (Sun Apr 18 2004 - 19:44:40 CDT)
- Kooser, Ara S (Fri Apr 16 2004 - 10:50:39 CDT)
- John Stone (Tue Apr 13 2004 - 16:05:56 CDT)
- Kooser, Ara S (Tue Apr 13 2004 - 16:08:35 CDT)
- Kooser, Ara S (Tue Apr 13 2004 - 15:04:55 CDT)
- John Stone (Tue Apr 13 2004 - 14:23:17 CDT)
- Kooser, Ara S (Fri Apr 09 2004 - 10:37:32 CDT)
- Lubos Vrbka (Fri Apr 09 2004 - 09:35:19 CDT)
- John Stone (Thu Apr 08 2004 - 16:53:04 CDT)
- John Stone (Wed Apr 07 2004 - 15:32:42 CDT)
- Lubos Vrbka (Wed Apr 07 2004 - 11:12:56 CDT)
files
- Lars Burgdorf (Fri Dec 08 2000 - 13:57:33 CST)
- John Stone (Fri Dec 08 2000 - 12:40:43 CST)
- Zachariah Sinkala (Fri Dec 08 2000 - 11:50:31 CST)
Files closing/Memory issues in VMD
- John Stone (Mon Feb 19 2007 - 17:30:16 CST)
- Alexander Balaeff (Mon Feb 19 2007 - 14:03:54 CST)
files for air
- Axel Kohlmeyer (Fri May 11 2007 - 07:46:23 CDT)
- SMAHANE CHALABI (Fri May 11 2007 - 04:01:27 CDT)
find avgstruct
- Axel Kohlmeyer (Fri Nov 04 2011 - 07:29:32 CDT)
- Ajasja LjubetiÄ (Fri Nov 04 2011 - 06:03:16 CDT)
- hamze rahimi (Fri Nov 04 2011 - 04:30:38 CDT)
find neighbour ligand-protein
- John Stone (Thu Mar 23 2006 - 08:57:52 CST)
- andrea spitaleri (Thu Mar 23 2006 - 08:53:40 CST)
finding charges and diameters
- Shuaib Shahid (Wed Feb 25 2004 - 03:21:52 CST)
- Shuaib Shahid (Tue Feb 24 2004 - 11:20:27 CST)
Finding residues involved in Hbonds.
- Axel Kohlmeyer (Thu Sep 14 2006 - 13:12:56 CDT)
- Nitin Bhardwaj (Thu Sep 14 2006 - 11:16:21 CDT)
Finding residues with some distance
- John Stone (Wed Mar 03 2010 - 22:35:10 CST)
- Anurag Sethi (Wed Mar 03 2010 - 18:25:11 CST)
- Neeraj Jagdish Agrawal (Wed Mar 03 2010 - 17:38:33 CST)
Finding resname without using atomselect?
- Cosseddu, Salvatore (Tue Nov 01 2011 - 18:35:22 CDT)
- Cosseddu, Salvatore (Tue Nov 01 2011 - 18:48:29 CDT)
- Axel Kohlmeyer (Tue Nov 01 2011 - 16:50:51 CDT)
- Casey Johnson (Tue Nov 01 2011 - 15:46:28 CDT)
Finding the length of multiple small molecules
- Axel Kohlmeyer (Sat Dec 08 2007 - 16:03:07 CST)
- Manali Mehendale (Sat Dec 08 2007 - 15:09:47 CST)
- Axel Kohlmeyer (Fri Dec 07 2007 - 14:19:47 CST)
- Manali Mehendale (Fri Dec 07 2007 - 13:15:59 CST)
finding water around protein
- divya nayar (Wed Jun 22 2011 - 23:55:35 CDT)
fit dcd is not converging
- mohan maruthi sena (Fri Apr 22 2011 - 03:52:48 CDT)
- mohan maruthi sena (Thu Apr 21 2011 - 22:53:01 CDT)
- John Stone (Thu Apr 21 2011 - 15:02:48 CDT)
- mohan maruthi sena (Thu Apr 21 2011 - 13:54:04 CDT)
- John Stone (Thu Apr 21 2011 - 12:15:30 CDT)
- mohan maruthi sena (Thu Apr 21 2011 - 11:49:02 CDT)
- John Stone (Thu Apr 21 2011 - 11:17:02 CDT)
- mohan maruthi sena (Thu Apr 21 2011 - 10:37:31 CDT)
- mohan maruthi sena (Thu Apr 21 2011 - 10:48:33 CDT)
- John Stone (Thu Apr 21 2011 - 10:22:10 CDT)
- mohan maruthi sena (Thu Apr 21 2011 - 04:10:07 CDT)
fit.tcl
- Bo Liu (Mon Nov 08 2010 - 09:23:24 CST)
- divya nayar (Mon Nov 08 2010 - 03:01:14 CST)
fitting
- Justin Gullingsrud (Thu Jul 10 2003 - 09:20:41 CDT)
- Vlad Cojocaru (Thu Jul 10 2003 - 07:13:07 CDT)
Fitting simple geometric objects to a molecule ?
- Justin Gullingsrud (Mon Dec 02 2002 - 09:19:55 CST)
- Marc Baaden (Mon Dec 02 2002 - 04:59:11 CST)
fitting structure to map generated by Volmap
- Axel Kohlmeyer (Wed Oct 22 2008 - 10:38:15 CDT)
- Tomek Wlodarski (Wed Oct 22 2008 - 04:56:03 CDT)
- Tomek Wlodarski (Tue Oct 21 2008 - 15:30:46 CDT)
- Axel Kohlmeyer (Tue Oct 21 2008 - 15:53:07 CDT)
- Axel Kohlmeyer (Tue Oct 21 2008 - 14:53:57 CDT)
- Tomek Wlodarski (Tue Oct 21 2008 - 14:46:15 CDT)
- Axel Kohlmeyer (Tue Oct 21 2008 - 09:01:22 CDT)
- Tomek Wlodarski (Tue Oct 21 2008 - 07:55:09 CDT)
Fitting trajectory frames to another molecule
- Justin Gullingsrud (Mon Jul 18 2005 - 20:22:51 CDT)
- klsale (Mon Jul 18 2005 - 18:49:15 CDT)
Fix for SELinux breaking VMD on FC5
- John Stone (Tue Apr 04 2006 - 11:28:38 CDT)
Fixed number of solvatation water
- Andrea Cristiani (Wed Apr 25 2007 - 04:56:41 CDT)
fixing a molecule
- Barry Isralewitz (Wed Aug 01 2001 - 17:40:06 CDT)
- Jeff Taylor (Tue Jul 31 2001 - 10:19:39 CDT)
- John Stone (Mon Jul 30 2001 - 20:40:28 CDT)
- Mauricio Carrillo-Tripp (Mon Jul 30 2001 - 17:08:39 CDT)
Fixing CAVE Functionality
- Todd J. Furlong (Tue Apr 09 2002 - 10:27:49 CDT)
Fixing the View in a Movie
- John Stone (Fri Oct 12 2007 - 16:14:14 CDT)
- carlos_at_avalon.umaryland.edu (Fri Oct 12 2007 - 11:44:45 CDT)
flashing the VMD
- mohammad agha (Sat May 19 2012 - 02:49:39 CDT)
- Wang Yi (Thu May 10 2012 - 11:17:11 CDT)
- Axel Kohlmeyer (Thu May 10 2012 - 10:49:11 CDT)
- Wang Yi (Thu May 10 2012 - 09:57:19 CDT)
- Axel Kohlmeyer (Thu May 10 2012 - 08:41:00 CDT)
- mohammad agha (Thu May 10 2012 - 01:56:22 CDT)
- mohammad agha (Thu May 10 2012 - 02:00:37 CDT)
- mohammad agha (Thu May 10 2012 - 01:42:43 CDT)
- John Stone (Wed May 09 2012 - 13:17:42 CDT)
- mohammad agha (Wed May 09 2012 - 12:26:10 CDT)
- mohammad agha (Wed May 09 2012 - 12:24:53 CDT)
- mohammad agha (Wed May 09 2012 - 11:16:02 CDT)
- John Stone (Wed May 09 2012 - 11:13:43 CDT)
- mohammad agha (Wed May 09 2012 - 11:07:23 CDT)
- Axel Kohlmeyer (Wed May 09 2012 - 11:01:54 CDT)
- mohammad agha (Wed May 09 2012 - 10:26:50 CDT)
- mohammad agha (Wed May 09 2012 - 10:24:58 CDT)
- John Stone (Wed May 09 2012 - 10:30:23 CDT)
- John Stone (Wed May 09 2012 - 10:11:38 CDT)
- mohammad agha (Wed May 09 2012 - 10:07:24 CDT)
- mohammad agha (Wed May 09 2012 - 10:00:54 CDT)
- Axel Kohlmeyer (Tue May 08 2012 - 16:26:26 CDT)
- Axel Kohlmeyer (Tue May 08 2012 - 16:22:57 CDT)
- mohammad agha (Tue May 08 2012 - 15:32:31 CDT)
- mohammad agha (Tue May 08 2012 - 14:54:03 CDT)
- mohammad agha (Tue May 08 2012 - 14:52:53 CDT)
- Gianluca Interlandi (Tue May 08 2012 - 11:23:06 CDT)
- Axel Kohlmeyer (Tue May 08 2012 - 09:18:17 CDT)
- Axel Kohlmeyer (Tue May 08 2012 - 09:09:27 CDT)
- Wang Yi (Tue May 08 2012 - 09:14:35 CDT)
- Wang Yi (Tue May 08 2012 - 08:19:43 CDT)
- mohammad agha (Tue May 08 2012 - 05:18:04 CDT)
flasshing the VMD
- Axel Kohlmeyer (Tue May 08 2012 - 08:16:53 CDT)
- mohammad agha (Mon May 07 2012 - 22:25:58 CDT)
- Axel Kohlmeyer (Mon May 07 2012 - 22:10:30 CDT)
- mohammad agha (Mon May 07 2012 - 21:13:43 CDT)
Flexible Water molecules
- Jim Phillips (Fri Sep 24 2004 - 19:02:37 CDT)
- Shirley Hui (Sat Feb 21 2004 - 17:54:00 CST)
floating error - tcl script
- Ban Arn (Fri Feb 03 2012 - 04:51:11 CST)
Flow Fields
- Axel Kohlmeyer (Tue Feb 10 2009 - 16:53:19 CST)
- John Stone (Tue Feb 10 2009 - 16:28:08 CST)
- Roland Schulz (Tue Feb 10 2009 - 16:04:23 CST)
Focal blur with Tachyon
- John Stone (Thu Aug 05 2010 - 17:09:46 CDT)
- Bogdan Costescu (Fri Jul 30 2010 - 04:49:55 CDT)
- Nicolas Sapay (Fri Jul 30 2010 - 03:13:49 CDT)
follow up
- John Stone (Mon Jun 04 2001 - 15:47:29 CDT)
- Jeff Taylor (Mon Jun 04 2001 - 15:30:35 CDT)
Follow-up to PME question
- Stefan Franzen (Sun May 02 2010 - 16:54:06 CDT)
follow-up to previous message
- sjcav_at_aros.net (Sat Jun 29 2002 - 03:56:13 CDT)
font size
- Deepak Singh (Fri Nov 12 1999 - 13:38:53 CST)
fonts for paratool
- John Stone (Thu Sep 22 2011 - 01:31:07 CDT)
- Francesco Pietra (Sun Sep 18 2011 - 09:11:38 CDT)
For loops decelerate
- Axel Kohlmeyer (Mon Jun 06 2011 - 16:36:31 CDT)
- Benjamin Hall (Mon Jun 06 2011 - 16:28:31 CDT)
- John Stone (Mon Jun 06 2011 - 13:47:41 CDT)
- Axel Kohlmeyer (Fri Jun 03 2011 - 14:19:12 CDT)
- John Stone (Fri Jun 03 2011 - 14:13:14 CDT)
- Axel Kohlmeyer (Fri Jun 03 2011 - 13:57:27 CDT)
- John Stone (Fri Jun 03 2011 - 13:02:04 CDT)
- Benjamin Hall (Fri Jun 03 2011 - 11:23:25 CDT)
- Axel Kohlmeyer (Thu Jun 02 2011 - 06:27:04 CDT)
- Benjamin Hall (Thu Jun 02 2011 - 03:39:02 CDT)
For Users of VMD
- Yojana Joshi (Mon Feb 16 2004 - 09:58:50 CST)
Force extension from SMD log file
- snoze pa (Thu Aug 20 2009 - 17:25:20 CDT)
Force field atom types
- Peter Freddolino (Sun Oct 28 2007 - 10:25:28 CDT)
- FyD (Sun Oct 28 2007 - 05:23:11 CDT)
Force field toolkit (ffTK) - problem of reading Gaussian log file
- Mayne, Christopher G (Sat Mar 10 2012 - 15:44:06 CST)
- Wang Yi (Sat Mar 10 2012 - 15:14:20 CST)
- Wang Yi (Sat Mar 10 2012 - 13:58:20 CST)
Force Field ToolKit - Angles
- DENILSON FERREIRA DE OLIVEIRA (Mon Apr 30 2012 - 21:20:54 CDT)
- DENILSON FERREIRA DE OLIVEIRA (Mon Apr 30 2012 - 21:22:37 CDT)
- Mayne, Christopher G (Mon Apr 30 2012 - 20:15:21 CDT)
- DENILSON FERREIRA DE OLIVEIRA (Mon Apr 30 2012 - 15:22:42 CDT)
- JC Gumbart (Mon Apr 30 2012 - 15:26:07 CDT)
- Wang Yi (Sun Apr 29 2012 - 19:56:10 CDT)
- DENILSON FERREIRA DE OLIVEIRA (Sun Apr 29 2012 - 19:29:33 CDT)
- DENILSON FERREIRA DE OLIVEIRA (Sun Apr 29 2012 - 18:58:39 CDT)
- Mayne, Christopher G (Sun Apr 29 2012 - 16:28:16 CDT)
- JC Gumbart (Sun Apr 29 2012 - 14:57:33 CDT)
- DENILSON FERREIRA DE OLIVEIRA (Sun Apr 29 2012 - 14:39:52 CDT)
Force Field Toolkit: scaling, weight etc
- DENILSON FERREIRA DE OLIVEIRA (Sun Apr 29 2012 - 18:11:56 CDT)
- Mayne, Christopher G (Sun Apr 29 2012 - 16:13:30 CDT)
- DENILSON FERREIRA DE OLIVEIRA (Sun Apr 29 2012 - 06:37:04 CDT)
force over selection
- John Stone (Thu Mar 23 2006 - 10:26:50 CST)
- Ioana Cozmuta (Wed Mar 22 2006 - 23:51:46 CST)
format of pdb file
- Axel Kohlmeyer (Mon Oct 12 2009 - 10:10:06 CDT)
- Christine Horejs (Mon Oct 12 2009 - 09:04:51 CDT)
Format of the axes
- John Stone (Wed Jun 04 2003 - 14:22:20 CDT)
Formation of a gold layer
- John Stone (Tue Mar 16 2004 - 10:24:23 CST)
- lmfok_at_acae.cuhk.edu.hk (Mon Mar 08 2004 - 20:41:33 CST)
Formats supported by animate write file_type
- Salvatore Mario Cosseddu (Thu Jan 20 2011 - 10:19:42 CST)
fortran bindings for molfile library
- John Stone (Wed Feb 15 2006 - 10:22:04 CST)
- Axel Kohlmeyer (Wed Feb 15 2006 - 09:31:54 CST)
fortran/tcl
- Axel Kohlmeyer (Fri May 25 2007 - 10:55:50 CDT)
- Luca Bellucci (Fri May 25 2007 - 03:13:54 CDT)
FPS indicator color
- John Stone (Wed Jul 21 2004 - 11:12:48 CDT)
- Olaf Lenz (Tue Jul 20 2004 - 12:06:03 CDT)
- John Stone (Mon Jul 19 2004 - 11:35:36 CDT)
- John Stone (Mon Jul 19 2004 - 10:16:20 CDT)
- Olaf Lenz (Mon Jul 19 2004 - 10:06:55 CDT)
Fragments
- John Stone (Thu Apr 22 2010 - 10:26:59 CDT)
- Olaf Lenz (Wed Apr 21 2010 - 03:19:04 CDT)
Frame creation
- Axel Kohlmeyer (Fri Sep 25 2009 - 05:14:03 CDT)
- Andreas Wagenmann (Fri Sep 25 2009 - 02:01:27 CDT)
- John Stone (Thu Sep 24 2009 - 10:02:58 CDT)
- Axel Kohlmeyer (Thu Sep 24 2009 - 10:13:16 CDT)
- Andreas Wagenmann (Thu Sep 24 2009 - 09:28:50 CDT)
frame number input in tcl and direct mol graph display update
- Axel Kohlmeyer (Thu Jul 12 2007 - 10:03:43 CDT)
- pascal.baillod_at_epfl.ch (Thu Jul 12 2007 - 09:35:45 CDT)
frame number input in tcl and direct mol graph display update (II)
- Axel Kohlmeyer (Fri Jul 27 2007 - 13:56:05 CDT)
- John Stone (Fri Jul 27 2007 - 12:40:35 CDT)
- pascal.baillod_at_epfl.ch (Fri Jul 27 2007 - 04:56:24 CDT)
- John Stone (Thu Jul 26 2007 - 16:25:21 CDT)
- pascal.baillod_at_epfl.ch (Tue Jul 24 2007 - 09:36:35 CDT)
Frames-Movie
- Axel Kohlmeyer (Wed May 19 2010 - 14:39:12 CDT)
- Vikas Varshney (Wed May 19 2010 - 13:12:58 CDT)
- Salvador H-V (Wed May 19 2010 - 11:54:32 CDT)
Free Cluster-Building Workshops - 16-17 Mar 2006, 20-21 Apr 2006
- Tim Skirvin (Mon Feb 13 2006 - 13:33:09 CST)
Free Linux Cluster-Building Workshop - 30 Nov 2006 - 01 Dec 2006
- Tim Skirvin (Mon Oct 16 2006 - 12:34:13 CDT)
free sample!!!
- Ali Deyhim (Wed May 09 2001 - 10:35:13 CDT)
- your1word_at_yahoo.com (Wed May 09 2001 - 07:18:35 CDT)
Free software for building peptide
- sajad falsafi (Wed May 02 2012 - 06:56:14 CDT)
- amin_at_imtech.res.in (Wed May 02 2012 - 04:06:30 CDT)
- Thomas Evangelidis (Wed May 02 2012 - 04:01:09 CDT)
- meisam valizadeh kiamahalleh (Wed May 02 2012 - 01:34:20 CDT)
Free Trial of New Toxicity Prediction Software (LD50, MRDD, side effects) is now available
- Maxim Kholin (Tue Oct 28 2008 - 09:00:25 CDT)
Free Webinar: Vendor Neutral Intro to Data Mining for Absolute Beginners, January 26, 2007
- Lisa Solomon (Mon Jan 15 2007 - 22:55:13 CST)
FreeBSD port
- Stephen Montgomery-Smith (Thu Aug 12 2004 - 23:20:56 CDT)
freevr tool transformation
- John Stone (Thu Jan 03 2008 - 01:12:44 CST)
- Ahmed Nawar (Thu Jan 03 2008 - 00:28:31 CST)
FreeVR wand
- John Stone (Tue Dec 04 2007 - 18:00:55 CST)
- Ahmed Nawar (Tue Dec 04 2007 - 03:42:13 CST)
from points to a surface ?
- Paul Grayson (Fri Aug 30 2002 - 09:59:54 CDT)
- Marc Baaden (Fri Aug 30 2002 - 04:37:22 CDT)
- Paul Grayson (Wed Aug 28 2002 - 17:08:19 CDT)
- John Stone (Wed Aug 28 2002 - 16:43:21 CDT)
- Marc Baaden (Wed Aug 28 2002 - 16:35:10 CDT)
- John Stone (Wed Aug 28 2002 - 15:05:35 CDT)
- Marc Baaden (Wed Aug 28 2002 - 03:03:48 CDT)
From Vmd to lammps data file
- Axel Kohlmeyer (Mon Feb 27 2012 - 09:19:31 CST)
- Dimitrios Mantzalis (Mon Feb 27 2012 - 09:07:05 CST)
- Axel Kohlmeyer (Mon Feb 27 2012 - 08:07:24 CST)
- Dimitrios Mantzalis (Mon Feb 27 2012 - 06:55:34 CST)
ftp failed
- $B:,>k(J $B6Q(J (Thu Aug 29 2002 - 03:21:12 CDT)
- John Stone (Wed Aug 28 2002 - 15:28:00 CDT)
- $B:,>k(J $B6Q(J (Tue Aug 27 2002 - 02:35:49 CDT)
- John Stone (Mon Aug 26 2002 - 10:58:43 CDT)
- Hitoshi Nejo (Fri Aug 23 2002 - 02:14:23 CDT)
full version OEM soft
- chucruz_at_ks.uiuc.edu (Thu Oct 29 2009 - 23:14:25 CDT)
Fullerene coordinates
- lothar esser (Fri Aug 27 2004 - 08:21:41 CDT)
- #WONG CHEE HOW# (Fri Aug 27 2004 - 03:50:03 CDT)
Fullscreen mode in VMD
- John Stone (Tue Oct 07 2008 - 12:53:07 CDT)
- Alexandr Bezginov (Tue Oct 07 2008 - 12:34:59 CDT)
Functional Groups
- Axel Kohlmeyer (Fri Jan 09 2009 - 08:16:12 CST)
- Max (Fri Jan 09 2009 - 04:51:39 CST)
Funny tcl/tk script behavior....
- Alberto Sergio Garay (Tue Jun 30 2009 - 12:08:32 CDT)
- Axel Kohlmeyer (Tue Jun 30 2009 - 09:48:45 CDT)
- Alberto Sergio Garay (Tue Jun 30 2009 - 08:02:57 CDT)
Further angle question
- Axel Kohlmeyer (Sat Sep 08 2007 - 20:37:28 CDT)
- jo hanna (Sat Sep 08 2007 - 09:16:15 CDT)
Fwd: "cuda error cudastreamcreate",
- Francesco Pietra (Fri Jun 17 2011 - 02:36:49 CDT)
- John Stone (Fri Jun 17 2011 - 01:22:50 CDT)
- Francesco Pietra (Fri Jun 17 2011 - 00:50:05 CDT)
Fwd: (my) problems using molefacture dihedral
- Francesco Pietra (Sun Apr 03 2011 - 09:14:44 CDT)
- Francesco Pietra (Sun Apr 03 2011 - 08:49:53 CDT)
Fwd: -samples flag of measure sasa
- Nuno Sousa Cerqueira (Fri Jun 18 2010 - 15:20:23 CDT)
- John Stone (Fri Jun 18 2010 - 15:25:51 CDT)
Fwd: .pdbqt file type
- Francesco Pietra (Thu Mar 17 2011 - 05:16:04 CDT)
Fwd: [ACS award information, March 30 deadline]
- John Stone (Mon Mar 22 2010 - 12:23:45 CDT)
Fwd: [multiple topology files and resetpsf]
- Jim Phillips (Tue Feb 08 2011 - 14:49:48 CST)
Fwd: ACS awards
- John Stone (Mon Sep 15 2008 - 12:53:34 CDT)
Fwd: ACS awards information
- John Stone (Mon Mar 07 2011 - 10:45:17 CST)
Fwd: Announce: STRAP
- John Stone (Tue Mar 16 2004 - 16:06:47 CST)
Fwd: atom serial number
- Francesco Pietra (Sun Jul 01 2007 - 02:59:07 CDT)
Fwd: autopsf error: failed on end of segment
- Peter Freddolino (Tue Dec 28 2010 - 19:01:22 CST)
- Jim Phillips (Tue Dec 28 2010 - 17:03:41 CST)
- Dong Luo (Wed Dec 22 2010 - 09:51:39 CST)
- Francesco Pietra (Wed Dec 22 2010 - 00:50:35 CST)
Fwd: autopsf-patches C++ error 'expected integer but got "" ""' SOLVED, MY FAULT
- Francesco Pietra (Fri Feb 25 2011 - 07:59:56 CST)
Fwd: calculation hydrogen bond.
- subrata paul (Thu Oct 20 2011 - 22:57:17 CDT)
Fwd: Calculation the Surface Area/Volume of a Protein Cavity
- Nuno Sousa Cerqueira (Thu Dec 10 2009 - 07:13:07 CST)
Fwd: CG lipid bilayer vmd 1.8.7
- Francesco Pietra (Mon Dec 07 2009 - 01:31:46 CST)
- Francesco Pietra (Mon Dec 07 2009 - 02:01:28 CST)
Fwd: charmmgen to autopsf
- Francesco Pietra (Tue Mar 22 2011 - 13:38:37 CDT)
- Peter Freddolino (Tue Mar 22 2011 - 11:21:42 CDT)
- Francesco Pietra (Tue Mar 22 2011 - 11:03:05 CDT)
- Peter Freddolino (Mon Mar 21 2011 - 19:11:35 CDT)
- Francesco Pietra (Mon Mar 21 2011 - 07:20:00 CDT)
Fwd: convert prmtop to psf
- Lai zaizhi (Mon Jun 21 2010 - 16:42:10 CDT)
Fwd: Copper ions paratool
- Francesco Pietra (Fri Sep 23 2011 - 10:12:04 CDT)
Fwd: Crystal eyes stereo on un supported Mac G5 GeForce FX5200
- John Stone (Fri Aug 18 2006 - 11:42:34 CDT)
- Dan White (Fri Aug 18 2006 - 09:15:23 CDT)
Fwd: Digest
- Dr. Daniel James White PhD (Wed Mar 17 2004 - 03:32:00 CST)
Fwd: Dowser plugin: Error message
- John Stone (Tue Aug 23 2011 - 12:39:44 CDT)
- George Tzotzos (Mon Aug 22 2011 - 16:34:31 CDT)
Fwd: Failure of AutoSCFBuilder to recognize all monomers
- Francesco Pietra (Sun Jan 03 2010 - 09:24:22 CST)
Fwd: Failure with AutoPSF (PDB has x, y, z zero)
- Peter Freddolino (Sat Dec 05 2009 - 15:40:27 CST)
- Francesco Pietra (Sat Dec 05 2009 - 14:25:41 CST)
- Francesco Pietra (Sat Dec 05 2009 - 12:51:22 CST)
Fwd: generating COORDINATE FILES
- PREETA DATTA (Tue Feb 20 2007 - 07:22:53 CST)
Fwd: GROMOS to AMBER and reverse
- John Stone (Fri Nov 29 2002 - 23:23:53 CST)
Fwd: hbond analysis
- John Stone (Fri Aug 05 2011 - 16:28:17 CDT)
- subrata paul (Wed Aug 03 2011 - 07:41:05 CDT)
Fwd: High quality movies, bmp frames and videomach=poor quality
- Jennifer Williams (Wed Apr 21 2010 - 05:56:33 CDT)
Fwd: How to pick up the lost periodic information?
- dimka (Mon May 08 2006 - 12:08:53 CDT)
- Axel Kohlmeyer (Mon May 08 2006 - 11:46:49 CDT)
- Guo Zhi (Mon May 08 2006 - 09:04:46 CDT)
Fwd: Initial configuration reorientation
- Anna (Wed Aug 24 2011 - 12:34:11 CDT)
Fwd: linux FC3 VMD vs insightII conflict
- Bogdan Costescu (Wed Jan 12 2005 - 11:08:45 CST)
- John Stone (Wed Jan 12 2005 - 10:20:08 CST)
- Dr. Daniel James White PhD (Wed Jan 12 2005 - 06:36:57 CST)
Fwd: Linux installation issue
- Axel Kohlmeyer (Tue Jun 05 2007 - 10:00:17 CDT)
- Francesco Pietra (Sun May 27 2007 - 02:44:32 CDT)
- Axel Kohlmeyer (Sat May 26 2007 - 15:41:24 CDT)
- Axel Kohlmeyer (Sat May 26 2007 - 15:36:40 CDT)
- Francesco Pietra (Sat May 26 2007 - 09:57:40 CDT)
- Francesco Pietra (Sat May 26 2007 - 09:47:51 CDT)
Fwd: memory overflow problem of Tcl scripting when dealing with trajectories(sorry for cross mailing...)
- Peter Freddolino (Wed Jul 16 2008 - 07:20:26 CDT)
- bo liu (Wed Jul 16 2008 - 03:18:43 CDT)
Fwd: MOE discussion
- Mike McCallum (Wed Apr 28 2004 - 23:11:43 CDT)
Fwd: namd-l: hBond component in colvars and patching
- Francesco Pietra (Sun Mar 06 2011 - 02:36:10 CST)
Fwd: obscurity in sbcg tutorial description
- Francesco Pietra (Sat Jan 09 2010 - 16:01:21 CST)
Fwd: paratool - parameter generation from gaussian log files
- Nuno Sousa Cerqueira (Thu Dec 10 2009 - 01:05:51 CST)
Fwd: PDB Bonds versus "distance" bonds
- John Stone (Thu Jul 17 2008 - 09:24:55 CDT)
- Sergey Ivanov (Thu Jul 17 2008 - 08:14:39 CDT)
- John Stone (Tue Jul 15 2008 - 13:00:42 CDT)
- Axel Kohlmeyer (Tue Jul 15 2008 - 11:20:53 CDT)
- Sergey Ivanov (Tue Jul 15 2008 - 10:49:43 CDT)
Fwd: Pdb file generation,bad water removal and coordinates of psf.
- madhumita das (Wed Sep 07 2011 - 20:24:47 CDT)
Fwd: peptide builder
- Peter Freddolino (Fri Sep 07 2007 - 11:36:45 CDT)
- L. Michel Espinoza-Fonseca (Fri Sep 07 2007 - 11:35:39 CDT)
Fwd: Postdoctoral position available in Molecular Modeling
- John Stone (Fri Feb 14 2003 - 13:27:31 CST)
Fwd: Problem with cartoon and secondary structure
- Francisco José Taberner Sanchis (Tue May 03 2011 - 03:26:18 CDT)
Fwd: Question regarding HBond analysis
- Ganesh Kamath (Tue Jan 17 2012 - 12:26:01 CST)
Fwd: Restraints on coarse grained model
- Francesco Pietra (Wed Dec 09 2009 - 03:07:36 CST)
Fwd: Saved project and paratool
- Francesco Pietra (Fri Sep 23 2011 - 06:00:05 CDT)
Fwd: sbcg with multimers
- Francesco Pietra (Thu Dec 31 2009 - 04:40:14 CST)
Fwd: scripts CGTools
- menica dibenedetto (Fri Feb 18 2011 - 06:39:29 CST)
Fwd: spacial distribution function
- L. Michel Espinoza-Fonseca (Tue Feb 19 2008 - 18:54:53 CST)
Fwd: superimposing molecules
- John Stone (Tue Sep 24 2002 - 14:23:24 CDT)
Fwd: Tcl script
- Axel Kohlmeyer (Tue Jan 20 2009 - 08:49:21 CST)
- Roman Petrenko (Tue Jan 20 2009 - 06:24:37 CST)
- varsha gautham (Tue Jan 20 2009 - 02:11:56 CST)
Fwd: trajectory_path.tcl queries
- Axel Kohlmeyer (Sun Mar 14 2010 - 10:10:02 CDT)
- Francesco Pietra (Sun Mar 14 2010 - 04:51:02 CDT)
Fwd: version 1.8.7 for amd64 and cg tools
- Francesco Pietra (Thu Nov 12 2009 - 23:33:42 CST)
- John Stone (Thu Nov 12 2009 - 23:40:32 CST)
Fwd: vmd first installation
- Francesco Pietra (Fri May 11 2007 - 11:05:08 CDT)
- John Stone (Fri May 11 2007 - 10:51:53 CDT)
- Axel Kohlmeyer (Fri May 11 2007 - 07:21:43 CDT)
- Francesco Pietra (Fri May 11 2007 - 02:50:29 CDT)
- Axel Kohlmeyer (Wed May 09 2007 - 16:41:10 CDT)
- Francesco Pietra (Wed May 09 2007 - 16:59:08 CDT)
Fwd: vmd installation Linux Debian i386
- Axel Kohlmeyer (Tue Jun 05 2007 - 17:43:49 CDT)
- Francesco Pietra (Tue Jun 05 2007 - 17:47:06 CDT)
- John Stone (Tue Jun 05 2007 - 13:02:26 CDT)
- Francesco Pietra (Tue Jun 05 2007 - 12:55:05 CDT)
Fwd: Vmd molecule rotation and translation
- Anna (Mon Aug 08 2011 - 19:45:53 CDT)
Fwd: VMD Stereo does not work Quadbufferd
- Mark Cunningham (Fri May 11 2012 - 09:54:45 CDT)
- Christian Wohlschlager (Fri May 11 2012 - 03:45:12 CDT)
- John Stone (Mon May 07 2012 - 03:03:38 CDT)
- Christian Wohlschlager (Mon May 07 2012 - 02:46:23 CDT)
Fwd: Writing pdb without chain identifier
- John Stone (Wed Jan 03 2007 - 10:31:05 CST)
FYI: (for OSX version) a document about shell script and applescript
- MengJuei Hsieh (Tue Jan 28 2003 - 17:13:41 CST)
FYI: 1.8.6 runs full GLSL on AMD64
- John Stone (Wed Aug 22 2007 - 22:55:06 CDT)
- John Stone (Wed Aug 22 2007 - 13:40:37 CDT)
FYI: cause of a common Windows VMD install error message...
- John Stone (Thu Apr 07 2005 - 13:01:43 CDT)
FYI: vmd & vrpn v7.0b5
- John Stone (Wed Dec 21 2005 - 09:57:26 CST)
- Marc Baaden (Wed Dec 21 2005 - 05:25:11 CST)
FYI:CCL:md rookie update (fwd)
- root (Thu Jan 08 1998 - 12:42:37 CST)
g(r)
- Axel Kohlmeyer (Thu Jul 31 2008 - 08:57:34 CDT)
- Rudra Banerjee (Thu Jul 31 2008 - 00:46:01 CDT)
- Axel Kohlmeyer (Wed Jul 30 2008 - 14:31:55 CDT)
- Rudra Banerjee (Wed Jul 30 2008 - 12:13:40 CDT)
G(r) tcl script not including intramolecular correlations
- Hall, Lisa Michelle (Fri May 07 2010 - 10:46:27 CDT)
- Axel Kohlmeyer (Thu May 06 2010 - 19:46:26 CDT)
- Hall, Lisa Michelle (Thu May 06 2010 - 18:12:49 CDT)
g03 output and editing features for VMD
- John Stone (Mon Aug 30 2004 - 11:18:25 CDT)
- Vlad Cojocaru (Mon Aug 30 2004 - 11:03:41 CDT)
gamepad on linux?
- John Stone (Wed Apr 02 2003 - 11:15:44 CST)
- Dr. Daniel James White PhD (Wed Apr 02 2003 - 10:52:15 CST)
Gamepads and VMD (and MacOSX and ForceFeedback)
- John Stone (Mon May 15 2006 - 12:04:35 CDT)
- Marc Baaden (Fri May 12 2006 - 10:13:46 CDT)
GAMESS plugin bus error
- Ralph Jimenez (Wed Mar 28 2007 - 15:11:17 CDT)
gamess plugin error of vmd 1.8.4a22 on windows
- John Stone (Fri Oct 28 2005 - 12:04:37 CDT)
- John Stone (Mon Oct 17 2005 - 15:03:37 CDT)
- mashaojie163 (Sat Oct 15 2005 - 01:20:40 CDT)
- mashaojie163 (Mon Oct 17 2005 - 06:53:53 CDT)
gamess plugin error when using symmetry operations
- mashaojienuaa (Fri May 26 2006 - 20:49:03 CDT)
- mashaojienuaa (Thu May 25 2006 - 01:56:08 CDT)
- John Stone (Tue May 23 2006 - 13:02:30 CDT)
- mashaojienuaa (Tue May 23 2006 - 10:02:36 CDT)
- mashaojienuaa (Sun May 21 2006 - 21:12:20 CDT)
gamess plungin for PC Gamess
- John Stone (Tue Nov 07 2006 - 15:34:33 CST)
- mashaojie163 (Tue Nov 07 2006 - 01:00:58 CST)
Gaussian Cube file with VMD
- Axel Kohlmeyer (Tue May 23 2006 - 15:34:04 CDT)
- John Stone (Tue May 23 2006 - 13:14:29 CDT)
- Berit Hinnemann (Tue May 23 2006 - 11:00:36 CDT)
- Axel Kohlmeyer (Mon May 22 2006 - 23:25:18 CDT)
- Berit Hinnemann (Mon May 22 2006 - 18:29:12 CDT)
Gaussian03 output
- Vlad Cojocaru (Tue Aug 24 2004 - 10:09:27 CDT)
gaussinan_log_file_error_can't use empty string as operand of "/"
- Karol Kaszuba (Tue Nov 27 2007 - 03:28:04 CST)
Geforce 3 DRI crashes
- Stéphane Teletchéa (Wed Apr 10 2002 - 04:10:21 CDT)
- John Stone (Tue Apr 09 2002 - 13:07:18 CDT)
- John Stone (Tue Apr 09 2002 - 09:57:55 CDT)
- Mikko Huhtala (Tue Apr 09 2002 - 08:37:11 CDT)
GeForce FX5800 and VMD 1.8.1
- Joost Van Durme (Thu Jun 05 2003 - 12:19:59 CDT)
General query on MD
- Peter Freddolino (Fri Jan 20 2006 - 09:06:49 CST)
- Lin (Wed Jan 18 2006 - 23:31:06 CST)
General question about the memory usage of VMD
- gurunath katagi (Mon Jan 26 2009 - 03:10:56 CST)
- John Stone (Mon Nov 24 2008 - 11:00:33 CST)
- Axel Kohlmeyer (Mon Nov 17 2008 - 14:31:02 CST)
- Robert Brunner (Mon Nov 17 2008 - 14:42:45 CST)
- tinifcarter_at_gmail.com (Mon Nov 17 2008 - 11:48:00 CST)
Generate a PSF file for small, simple molecules
- Ajasja LjubetiÄ (Fri Apr 01 2011 - 02:15:51 CDT)
- THANH NGUYEN (Thu Mar 31 2011 - 17:46:44 CDT)
- John Stone (Thu Mar 31 2011 - 14:59:37 CDT)
- THANH NGUYEN (Mon Mar 28 2011 - 19:11:42 CDT)
Generate psf file for cyclic peptide
- Tu.Le_at_csiro.au (Mon May 02 2011 - 22:33:01 CDT)
generate psf structure
- Axel Kohlmeyer (Sun Sep 07 2008 - 13:50:39 CDT)
- Rudra Banerjee (Sat Sep 06 2008 - 04:15:25 CDT)
generate surface figure
- Axel Kohlmeyer (Thu Jun 28 2007 - 12:25:30 CDT)
- Zhenwei Lu (Thu Jun 28 2007 - 11:54:31 CDT)
Generatin PSF for alkanes
- Peter Freddolino (Sun Nov 11 2007 - 11:02:52 CST)
- Axel Kohlmeyer (Sun Nov 11 2007 - 00:54:50 CST)
- Santanu Chatterjee (Sat Nov 10 2007 - 22:38:55 CST)
generating
- Axel Kohlmeyer (Tue Feb 20 2007 - 14:45:27 CST)
- PREETA DATTA (Tue Feb 20 2007 - 14:30:11 CST)
- Axel Kohlmeyer (Tue Feb 20 2007 - 09:05:44 CST)
- PREETA DATTA (Tue Feb 20 2007 - 07:19:13 CST)
generating .xsc file from .dcd
- John Stone (Tue Dec 01 2009 - 10:07:57 CST)
- Neelanjana Sengupta (Mon Nov 30 2009 - 04:19:43 CST)
generating .xsc files using periodic information
- Neelanjana Sengupta (Tue Apr 26 2011 - 23:07:07 CDT)
- Jim Phillips (Tue Apr 26 2011 - 23:16:46 CDT)
- Jim Phillips (Tue Apr 26 2011 - 11:35:43 CDT)
- Axel Kohlmeyer (Tue Apr 26 2011 - 11:31:28 CDT)
- John Stone (Tue Apr 26 2011 - 11:02:48 CDT)
- Neelanjana Sengupta (Wed Apr 20 2011 - 07:06:04 CDT)
generating a huge number of water molecules
- John Stone (Thu Jan 19 2006 - 14:40:22 CST)
- Morad Alawneh (Thu Jan 12 2006 - 12:11:19 CST)
Generating a psf file using VMD
- John Stone (Mon Jan 23 2012 - 10:58:38 CST)
- Axel Kohlmeyer (Thu Jan 19 2012 - 17:55:01 CST)
- Ganesh Kamath (Thu Jan 19 2012 - 16:56:47 CST)
Generating a PSF for a Non-protien
- John Stone (Wed Mar 03 2010 - 10:47:52 CST)
- Aziz, John (Mon Mar 01 2010 - 08:27:10 CST)
Generating an average structure from a trajectory
- Brian Bennion (Fri Sep 16 2005 - 18:22:43 CDT)
- Luis Gracia (Fri Sep 16 2005 - 16:24:51 CDT)
- John Stone (Fri Sep 16 2005 - 15:38:06 CDT)
- Kara Di Giorgio (Fri Sep 16 2005 - 13:01:34 CDT)
generating COORDINATE FILES
- PREETA DATTA (Tue Feb 20 2007 - 05:48:41 CST)
generating lipid membrane psf file
- Ajasja LjubetiÄ (Sat Dec 04 2010 - 14:57:11 CST)
- Axel Kohlmeyer (Thu Dec 02 2010 - 10:39:53 CST)
- Patrick Fleming (Thu Dec 02 2010 - 07:15:22 CST)
Generating more than 100,000 water molecules
- John Stone (Tue Jan 24 2006 - 15:26:18 CST)
- Jindal Shah (Tue Jan 24 2006 - 15:06:15 CST)
Generating nanotubes psf file
- Axel Kohlmeyer (Mon Apr 05 2010 - 16:05:34 CDT)
- Ranyere Deyler (Mon Apr 05 2010 - 15:47:24 CDT)
- Axel Kohlmeyer (Mon Apr 05 2010 - 14:30:21 CDT)
- Ronald Salesky (Mon Apr 05 2010 - 14:33:44 CDT)
- Ranyere Deyler (Mon Apr 05 2010 - 14:06:38 CDT)
- Axel Kohlmeyer (Mon Apr 05 2010 - 11:56:07 CDT)
- Ranyere Deyler (Mon Apr 05 2010 - 11:33:46 CDT)
- Axel Kohlmeyer (Mon Apr 05 2010 - 09:52:55 CDT)
- Ranyere Deyler (Mon Apr 05 2010 - 08:58:55 CDT)
Generating parameter file for Cl2-
- John Stone (Mon Oct 15 2007 - 15:22:08 CDT)
- Per Jr. Greisen (Mon Oct 15 2007 - 10:39:36 CDT)
generating psf file for a lipid: vmd looking for c-term and n-term ?
- Peter Freddolino (Tue Dec 05 2006 - 15:57:09 CST)
- Mohamed Osman (Tue Dec 05 2006 - 15:45:45 CST)
generating PSF file for a small molecule
- Ranyere Deyler (Sun May 23 2010 - 15:52:11 CDT)
- Hassan Shallal (Sun May 23 2010 - 03:53:58 CDT)
Generating PSF for 1JNO.pdb chain A
- Lin (Fri Apr 14 2006 - 10:29:07 CDT)
- Lin (Fri Mar 24 2006 - 08:29:01 CST)
Generating psfgen of multimeric protein complex
- Peter Freddolino (Tue Apr 18 2006 - 09:29:09 CDT)
- Per Jr. Greisen (Tue Apr 18 2006 - 04:35:50 CDT)
Generating Topo Bond Data from LAMMPS Data File
- Phelan Jr., Frederick R. Dr. (Wed Apr 20 2011 - 15:30:52 CDT)
- Axel Kohlmeyer (Wed Apr 20 2011 - 11:17:34 CDT)
- Phelan Jr., Frederick R. Dr. (Wed Apr 20 2011 - 10:23:29 CDT)
Generating water transparency around a protein
- Peter Freddolino (Fri Sep 14 2007 - 07:18:45 CDT)
- Jeffry D Madura (Fri Sep 14 2007 - 06:31:14 CDT)
Genrating psf
- Per Jr. Greisen (Wed Mar 29 2006 - 10:50:38 CST)
geometric location of amino acids in proteins
- John Stone (Tue Jul 12 2005 - 17:59:40 CDT)
- sankari thirumal (Wed Jul 06 2005 - 00:04:10 CDT)
get a PDB file from DCD file
- JT (Tue Jan 27 2009 - 11:01:41 CST)
- Benjamin Bouvier (Tue Jan 27 2009 - 09:49:51 CST)
- John Stone (Tue Jan 27 2009 - 08:44:32 CST)
- Axel Kohlmeyer (Tue Jan 27 2009 - 08:42:18 CST)
- Andres Morales N (Tue Jan 27 2009 - 07:58:23 CST)
get average coord. from .pdb file?
- John Stone (Tue Aug 17 2004 - 13:13:49 CDT)
- Shirley Li (Mon Aug 16 2004 - 19:33:21 CDT)
- John Stone (Mon Aug 16 2004 - 15:01:31 CDT)
- Shirley Li (Fri Aug 13 2004 - 11:43:27 CDT)
get average structure from dcd file?
- Philip Fowler (Wed Mar 17 2004 - 03:31:58 CST)
- li (Mon Mar 17 2008 - 16:24:47 CDT)
get avg ca distance
- Murpholino Peligro (Fri Mar 09 2012 - 11:09:08 CST)
- Ana Celia Vila Verde (Fri Mar 09 2012 - 02:10:56 CST)
- Murpholino Peligro (Thu Mar 08 2012 - 15:33:19 CST)
get charge
- Axel Kohlmeyer (Thu Jun 28 2007 - 12:27:43 CDT)
- lily jin (Thu Jun 28 2007 - 12:56:46 CDT)
- John Stone (Thu Jun 28 2007 - 13:07:51 CDT)
get coordinates
- Andres Morales N (Sat Sep 12 2009 - 12:05:35 CDT)
- Axel Kohlmeyer (Sat Sep 12 2009 - 13:01:35 CDT)
Get one of these awesome replicas
- Rolando Carlson (Sun May 04 2008 - 12:10:27 CDT)
- Melanie Mcmahon (Fri May 02 2008 - 01:05:03 CDT)
- Jerry Kiser (Thu Apr 24 2008 - 18:45:18 CDT)
get Ramachadran plot using textmode
- John Stone (Fri Dec 23 2011 - 17:46:46 CST)
- Gurunath Katagi (Fri Dec 09 2011 - 22:00:28 CST)
Get the camera position
- SAPAY Nicolas 232321 (Wed Nov 30 2011 - 10:20:52 CST)
get values from openDx grid format
- daniel aguayo (Wed Jan 18 2006 - 12:45:07 CST)
- John Stone (Tue Jan 17 2006 - 10:46:10 CST)
- daniel aguayo (Mon Jan 16 2006 - 19:25:57 CST)
- daniel aguayo (Mon Jan 16 2006 - 19:00:34 CST)
- daniel aguayo (Sun Jan 15 2006 - 19:33:45 CST)
get view direction
- Jacob Kirkensgaard (Tue Feb 16 2010 - 15:21:21 CST)
- John Stone (Tue Feb 16 2010 - 10:25:37 CST)
- Axel Kohlmeyer (Tue Feb 16 2010 - 06:21:23 CST)
- Jacob Kirkensgaard (Tue Feb 16 2010 - 03:58:24 CST)
Get your w4tch now Villa
- Joan Winslow (Thu Jul 24 2008 - 04:40:10 CDT)
Get your watch now
- Helena Slater (Wed Apr 23 2008 - 12:17:13 CDT)
getbonds for H-bonds request
- Axel Kohlmeyer (Mon Nov 08 2004 - 13:31:35 CST)
- pl (Mon Nov 08 2004 - 08:10:57 CST)
Getting (or changing) molinfo matrices
- John Stone (Fri Jan 26 2007 - 02:07:34 CST)
- Jancsó István (Thu Jan 25 2007 - 02:29:55 CST)
- John Stone (Wed Jan 24 2007 - 12:05:08 CST)
- Jancsó István (Wed Jan 24 2007 - 03:49:28 CST)
getting centre of mass of contacts
- John Stone (Mon Oct 10 2005 - 10:30:20 CDT)
- syma (Mon Oct 10 2005 - 07:13:39 CDT)
Getting coordinates
- Axel Kohlmeyer (Tue Dec 05 2006 - 16:37:00 CST)
- Myunggi Yi (Tue Dec 05 2006 - 15:47:20 CST)
Getting data as vector or matrix
- Iman Salehinia (Tue Dec 02 2008 - 00:48:29 CST)
getting heavy atom contacts
- B. Bennion (Thu Mar 20 2003 - 12:40:59 CST)
Getting history and file completion to work in vmd console ?
- Paul Grayson (Fri Aug 30 2002 - 10:01:50 CDT)
- John Stone (Fri Aug 30 2002 - 09:58:28 CDT)
- Marc Baaden (Fri Aug 30 2002 - 09:48:28 CDT)
- Paul Grayson (Fri Aug 30 2002 - 09:36:22 CDT)
- Justin Gullingsrud (Fri Aug 30 2002 - 08:37:04 CDT)
- Marc Baaden (Fri Aug 30 2002 - 04:02:47 CDT)
getting other variables out of LAMMPS ascii dump files
- Dan Lussier (Thu Jul 16 2009 - 04:46:03 CDT)
- Axel Kohlmeyer (Tue Jul 14 2009 - 18:00:35 CDT)
- Dan Lussier (Tue Jul 14 2009 - 17:31:57 CDT)
- Axel Kohlmeyer (Mon Jul 13 2009 - 14:21:03 CDT)
- Dan Lussier (Mon Jul 13 2009 - 13:44:23 CDT)
Getting PSF in right format from .gro file
- Donovan B.T. (Wed May 16 2012 - 08:54:59 CDT)
getting python to work
- John Stone (Thu Jul 01 2010 - 10:23:41 CDT)
- Seth Burleigh (Tue Jun 29 2010 - 11:20:09 CDT)
getting ramachandran plots with VMD
- Jérôme Hénin (Mon Oct 27 2003 - 15:47:06 CST)
- John Stone (Mon Oct 27 2003 - 15:50:51 CST)
- Madhuri Agashe (Mon Oct 27 2003 - 12:26:36 CST)
Getting started with VMD/freeVR
- John Stone (Wed Sep 15 2004 - 13:20:03 CDT)
- plbrown_at_cs.duke.edu (Wed Sep 15 2004 - 08:14:08 CDT)
giant spike in rmsd curve
- Peter Freddolino (Mon Nov 13 2006 - 15:37:46 CST)
- Nels Thorsteinson (Mon Nov 13 2006 - 13:36:14 CST)
GL window offset problem
- John Stone (Thu Feb 15 2007 - 13:05:37 CST)
- christopher (Mon Feb 12 2007 - 15:09:55 CST)
Global Command to load 200 pdb files, without using script files
- John Stone (Fri Jun 02 2006 - 11:52:30 CDT)
- Luis Gracia (Fri Jun 02 2006 - 11:35:53 CDT)
- Robert Selwyne (Fri Jun 02 2006 - 08:47:35 CDT)
GLSL Compile Error (VMD 1.8.4, Nvidia Driver 8762)
- John Stone (Mon Jun 26 2006 - 11:22:48 CDT)
- Hans Martin Senn (Mon Jun 26 2006 - 10:32:49 CDT)
- Axel Kohlmeyer (Mon Jun 26 2006 - 06:28:22 CDT)
- Hans Martin Senn (Mon Jun 26 2006 - 03:01:03 CDT)
GLSL error
- Dow Hurst DPHURST (Tue Jan 30 2007 - 11:08:22 CST)
- John Stone (Mon Jan 29 2007 - 15:22:50 CST)
- Dow Hurst DPHURST (Mon Jan 29 2007 - 14:40:14 CST)
GLSL failure in VMD 1.8.5, Nvidia 6200 card
- Guo Zhi (Mon Aug 28 2006 - 21:02:46 CDT)
- John Stone (Mon Aug 28 2006 - 11:37:48 CDT)
- Guo Zhi (Mon Aug 28 2006 - 08:57:39 CDT)
GLSL lost
- Ignacio Fernández Galván (Tue Mar 18 2008 - 04:59:41 CDT)
- Axel Kohlmeyer (Mon Mar 17 2008 - 13:59:35 CDT)
- Ignacio Fernández Galván (Mon Mar 17 2008 - 12:17:21 CDT)
GLSL or Clip plane
- John Stone (Mon Apr 04 2005 - 10:23:44 CDT)
- Jerry Ebalunode (Sat Apr 02 2005 - 17:44:02 CST)
GLSL rendering in VMD 1.8.6
- John Stone (Tue Apr 17 2007 - 14:43:58 CDT)
- Luis Rosales (Mon Apr 16 2007 - 17:40:35 CDT)
- John Stone (Fri Apr 13 2007 - 22:09:35 CDT)
- Luis Rosales (Fri Apr 13 2007 - 20:18:23 CDT)
GLSL rendering mode is NOT available
- John Stone (Mon Sep 10 2007 - 10:32:37 CDT)
- Axel Kohlmeyer (Mon Sep 10 2007 - 09:28:37 CDT)
- Roland Schmucki (Mon Sep 10 2007 - 07:04:48 CDT)
GLSL rendering problems
- John Stone (Thu Apr 05 2007 - 15:34:03 CDT)
- Nichols A. Romero (Thu Apr 05 2007 - 15:07:14 CDT)
- John Stone (Thu Apr 05 2007 - 14:55:13 CDT)
- Nichols A. Romero (Thu Apr 05 2007 - 14:41:22 CDT)
GLSL rendering problems (??)
- Axel Kohlmeyer (Mon May 14 2007 - 13:03:49 CDT)
- John Stone (Mon May 14 2007 - 12:42:08 CDT)
- Axel Kohlmeyer (Mon May 14 2007 - 11:04:34 CDT)
- Dow Hurst DPHURST (Mon May 14 2007 - 10:39:14 CDT)
- John Stone (Wed Apr 25 2007 - 09:53:54 CDT)
- Mario Valle (Tue Apr 24 2007 - 22:44:29 CDT)
- John Stone (Tue Apr 24 2007 - 16:19:59 CDT)
- Nichols A. Romero (Tue Apr 24 2007 - 16:00:20 CDT)
- John Stone (Tue Apr 24 2007 - 15:52:30 CDT)
- Nichols A. Romero (Tue Apr 24 2007 - 15:40:57 CDT)
GLSL rendermode now OK on Linux with NVidia 8756 driver version
- Pietro Amodeo (Tue Apr 11 2006 - 13:52:48 CDT)
- John Stone (Tue Apr 11 2006 - 12:28:43 CDT)
- Pietro Amodeo (Tue Apr 11 2006 - 12:24:49 CDT)
GLSL with ATI 5750 in Mac OS X 10.6 / 64-bit build
- John Stone (Thu Mar 10 2011 - 16:38:33 CST)
- John Stone (Thu Jan 27 2011 - 13:44:16 CST)
- Joshua A. Anderson (Thu Jan 27 2011 - 06:35:56 CST)
- Joshua A. Anderson (Wed Jan 26 2011 - 14:17:05 CST)
- John Stone (Wed Jan 26 2011 - 14:31:53 CST)
GLXBadLargeRequest
- John Stone (Thu Jul 29 2004 - 18:14:05 CDT)
- Ryan Golhar (Thu Jul 29 2004 - 14:20:06 CDT)
- John Stone (Thu Jul 29 2004 - 14:03:00 CDT)
- Ryan Golhar (Thu Jul 29 2004 - 13:52:35 CDT)
GLXBadLargeRequest and BadLength messages
- Roland Schulz (Thu Sep 23 2010 - 23:13:03 CDT)
- Moulton, Steve (Tue Sep 14 2010 - 11:03:13 CDT)
- John Stone (Mon Sep 13 2010 - 16:34:33 CDT)
- Moulton, Steve (Mon Sep 13 2010 - 15:43:32 CDT)
glycerol
- AyÅŸe Ã–zlem Aykut (Tue Oct 20 2009 - 03:13:57 CDT)
glycerol box
- Peter Freddolino (Thu Jun 28 2007 - 12:00:13 CDT)
- amit dong (Thu Jun 28 2007 - 11:14:12 CDT)
gmake invalid option --c install
- Axel Kohlmeyer (Sat Aug 11 2007 - 13:46:01 CDT)
- Axel Kohlmeyer (Sat Aug 11 2007 - 11:38:48 CDT)
- AustinSmall_at_comcast.net (Sat Aug 11 2007 - 12:52:32 CDT)
- AustinSmall_at_comcast.net (Sat Aug 11 2007 - 10:47:45 CDT)
GNU-Darwin rides Tiger, packages back on-line
- proclus_at_gnu-darwin.org (Fri May 06 2005 - 11:05:55 CDT)
GnuPlot works!
- Joe Huang (Mon Apr 22 2002 - 18:10:45 CDT)
- John Stone (Mon Apr 22 2002 - 17:09:31 CDT)
gofr
- Axel Kohlmeyer (Wed Oct 11 2006 - 14:46:15 CDT)
- Arturas Ziemys (Wed Oct 11 2006 - 13:22:54 CDT)
gofr limit, Kirkwood-Buff integrals
- Ivan Vyalov (Sat Apr 21 2012 - 14:13:37 CDT)
- Axel Kohlmeyer (Fri Apr 20 2012 - 17:50:26 CDT)
- Ivan Vyalov (Fri Apr 20 2012 - 14:49:21 CDT)
- Axel Kohlmeyer (Fri Apr 20 2012 - 14:11:28 CDT)
- Ivan Vyalov (Fri Apr 20 2012 - 05:43:18 CDT)
Gone until July 6th.
- John Stone (Wed Jun 30 2004 - 15:59:08 CDT)
gopython
- John Stone (Sat Sep 24 2005 - 22:36:07 CDT)
- John Stone (Sat Sep 24 2005 - 00:00:33 CDT)
- tcickovs_at_nd.edu (Fri Sep 23 2005 - 10:36:36 CDT)
GPCR-Membrane Issue
- Akshay Patny (Wed Sep 20 2006 - 12:29:49 CDT)
GPGPU Programming summer school at University of Tennessee, Aug 10-14.
- Axel Kohlmeyer (Mon Jun 29 2009 - 14:44:15 CDT)
GPL compatible PluginMgr/vmddlopen
- Roland Schulz (Wed Jul 08 2009 - 09:56:08 CDT)
- John Stone (Mon Jul 06 2009 - 21:45:27 CDT)
- Roland Schulz (Mon Jul 06 2009 - 04:19:52 CDT)
- John Stone (Sun Jul 05 2009 - 20:14:35 CDT)
- Roland Schulz (Sat Jul 04 2009 - 08:13:37 CDT)
GPU choice for large systems
- John Stone (Fri Nov 11 2011 - 12:41:03 CST)
- Thomas Bishop (Wed Oct 05 2011 - 14:28:45 CDT)
- John Stone (Sun Oct 02 2011 - 23:02:20 CDT)
- Axel Kohlmeyer (Sun Oct 02 2011 - 14:34:39 CDT)
- John Stone (Sat Oct 01 2011 - 21:26:37 CDT)
- John Stone (Sat Oct 01 2011 - 21:20:18 CDT)
- Axel Kohlmeyer (Sat Oct 01 2011 - 08:53:36 CDT)
- Dmitry Osolodkin (Sat Oct 01 2011 - 08:37:43 CDT)
- Axel Kohlmeyer (Sat Oct 01 2011 - 07:58:19 CDT)
- Dmitry Osolodkin (Sat Oct 01 2011 - 06:39:16 CDT)
GPU test machine
- Michael Di Domenico (Fri Mar 21 2008 - 14:46:37 CDT)
- John Stone (Thu Mar 20 2008 - 19:29:58 CDT)
- Michael Di Domenico (Thu Mar 20 2008 - 18:42:50 CDT)
- John Stone (Thu Mar 20 2008 - 15:34:52 CDT)
- Michael Di Domenico (Thu Mar 20 2008 - 15:29:41 CDT)
- John Stone (Thu Mar 20 2008 - 11:25:09 CDT)
- Michael Di Domenico (Thu Mar 20 2008 - 11:04:59 CDT)
Grab tool: picking problems
- John Stone (Tue Jan 09 2007 - 14:25:54 CST)
- Martijn Kragtwijk (Tue Jan 09 2007 - 09:55:52 CST)
Gradient Background
- John Stone (Fri Jun 18 2010 - 15:11:05 CDT)
- Vikas Varshney (Mon Jun 14 2010 - 15:13:26 CDT)
gradient background not rendered
- John Stone (Fri Feb 19 2010 - 16:58:46 CST)
- BIN ZHANG (Fri Feb 19 2010 - 16:50:59 CST)
graph button on label form
- John Stone (Mon Mar 18 2002 - 15:23:35 CST)
- Yufang Wang (Sun Mar 17 2002 - 15:03:41 CST)
graphic representation
- John Stone (Wed Apr 05 2006 - 15:30:37 CDT)
- ivana adamovic (Wed Apr 05 2006 - 15:26:53 CDT)
- John Stone (Wed Apr 05 2006 - 15:14:26 CDT)
- ivana adamovic (Wed Apr 05 2006 - 15:06:18 CDT)
- John Stone (Wed Apr 05 2006 - 13:33:31 CDT)
- John Stone (Wed Apr 05 2006 - 12:29:09 CDT)
- ivana adamovic (Wed Apr 05 2006 - 12:24:48 CDT)
graphic update
- John Stone (Tue Mar 20 2007 - 22:33:34 CDT)
- Myunggi Yi (Tue Mar 20 2007 - 22:08:32 CDT)
- Myunggi Yi (Tue Mar 20 2007 - 20:43:59 CDT)
- John Stone (Tue Mar 20 2007 - 20:40:09 CDT)
- Myunggi Yi (Tue Mar 20 2007 - 20:09:06 CDT)
graphical representation
- John Stone (Mon Nov 07 2011 - 13:29:43 CST)
- kirtana S (Tue Nov 01 2011 - 12:21:29 CDT)
- Goutham (Sun Mar 29 2009 - 15:01:50 CDT)
- Eric H. Lee (Sun Mar 29 2009 - 14:22:18 CDT)
- Francesco Pietra (Sun Mar 29 2009 - 13:59:15 CDT)
Graphical Representations doesn't recognize chain ID z
- John Stone (Wed Dec 16 2009 - 10:21:12 CST)
- Samuel Coulbourn Flores (Wed Dec 16 2009 - 09:59:47 CST)
graphical representations over a number of molecule files
- Stephen Cox (Mon Mar 07 2011 - 13:28:41 CST)
- Stephen Cox (Mon Feb 07 2011 - 04:00:48 CST)
- Axel Kohlmeyer (Sun Feb 06 2011 - 15:43:12 CST)
- Stephen Cox (Sun Feb 06 2011 - 14:38:30 CST)
Graphics algorithm
- Vieri Di Paola (Wed Mar 01 2000 - 03:59:15 CST)
Graphics algorithm (fwd)
- Vieri Di Paola (Wed Mar 01 2000 - 10:41:41 CST)
- John Stone (Wed Mar 01 2000 - 09:30:42 CST)
- Vieri Di Paola (Wed Mar 01 2000 - 04:30:58 CST)
Graphics algorithm II (fwd)
- Vieri Di Paola (Wed Mar 01 2000 - 11:03:48 CST)
graphics card
- John Stone (Tue Nov 08 2005 - 09:56:57 CST)
- William Sheffler (Tue Nov 08 2005 - 00:17:18 CST)
- Benjamin Goldsteen (Sun Nov 30 2003 - 19:02:23 CST)
- Jérôme Hénin (Sun Nov 30 2003 - 11:18:29 CST)
- Nguyen Hoang Phuong (Sun Nov 30 2003 - 09:41:16 CST)
Graphics card & Accelerator
- Stéphane Teletchéa (Fri Apr 19 2002 - 06:15:18 CDT)
- Sanjeev B.S. (Fri Apr 19 2002 - 02:58:22 CDT)
Graphics card for molecular graphics
- Edelmiro Moman (Thu Feb 11 2010 - 06:03:47 CST)
- Axel Kohlmeyer (Sun Jan 24 2010 - 13:09:26 CST)
- John Stone (Sun Jan 24 2010 - 13:01:36 CST)
- Edelmiro Moman (Sun Jan 24 2010 - 10:57:42 CST)
Graphics card for VMD
- Berit Hinnemann (Wed Dec 16 2009 - 07:16:14 CST)
- Axel Kohlmeyer (Tue Dec 15 2009 - 12:26:08 CST)
- Berit Hinnemann (Tue Dec 15 2009 - 11:25:25 CST)
Graphics card for VMD, number of atoms, file format
- John Stone (Tue Nov 09 2010 - 11:16:54 CST)
- Axel Kohlmeyer (Tue Nov 09 2010 - 10:51:32 CST)
- Prskalo, Alen-Pilip (Tue Nov 09 2010 - 10:43:08 CST)
- Andrew (Mon Nov 08 2010 - 14:29:07 CST)
- Axel Kohlmeyer (Mon Nov 08 2010 - 12:38:46 CST)
- Prskalo, Alen-Pilip (Mon Nov 08 2010 - 11:38:22 CST)
Graphics cards
- John Stone (Mon Sep 11 2006 - 11:34:32 CDT)
- David Chalmers (Sun Sep 10 2006 - 23:11:58 CDT)
- John Stone (Tue May 20 2003 - 10:55:24 CDT)
- Dallas Warren (Mon May 19 2003 - 17:06:30 CDT)
- John Stone (Mon May 19 2003 - 12:27:54 CDT)
- Dallas Warren (Sun May 18 2003 - 17:55:37 CDT)
graphics display works sometimes
- John Stone (Tue Dec 16 2003 - 23:07:43 CST)
- Luis Gracia (Tue Dec 16 2003 - 21:42:44 CST)
graphics for publication
- Peter Freddolino (Sat Apr 25 2009 - 07:30:04 CDT)
- YangMingjun (Sat Apr 25 2009 - 04:30:40 CDT)
- Axel Kohlmeyer (Fri Apr 24 2009 - 11:26:58 CDT)
- Peter Freddolino (Fri Apr 24 2009 - 11:06:57 CDT)
- YangMingjun (Fri Apr 24 2009 - 10:14:23 CDT)
Graphics Representation - Drawing methods
- Axel Kohlmeyer (Tue Jul 13 2010 - 18:08:18 CDT)
- puroorava annapaneni (Tue Jul 13 2010 - 17:39:06 CDT)
Graphics workstation and Xenon problems with VMD?
- John Stone (Wed Aug 27 2003 - 13:39:17 CDT)
- Fred Salsbury (Wed Aug 27 2003 - 13:24:11 CDT)
- Axel Kohlmeyer (Wed Aug 27 2003 - 10:19:44 CDT)
- Fred Salsbury (Wed Aug 27 2003 - 06:22:05 CDT)
- John Stone (Wed Aug 27 2003 - 00:26:11 CDT)
- Fred Salsbury (Tue Aug 26 2003 - 19:49:41 CDT)
graphing a dihedral
- Justin Gullingsrud (Sun May 14 2000 - 17:07:30 CDT)
- Deepak Singh (Sat May 13 2000 - 20:48:31 CDT)
Grasp file format for VMD!!
- John Stone (Mon Jan 24 2005 - 17:26:08 CST)
- N. Chitra (Mon Jan 24 2005 - 12:22:53 CST)
GRASP files
- Justin Gullingsrud (Wed Jun 14 2000 - 14:37:01 CDT)
- Paul Hubbard (Wed Jun 14 2000 - 11:10:34 CDT)
- Andrew Hall (Wed Jun 14 2000 - 10:17:27 CDT)
Grasp output view format!
- N. Chitra (Mon Jan 24 2005 - 12:28:50 CST)
GRASP plugin for VMD
- John Stone (Tue Sep 26 2006 - 12:52:06 CDT)
- Vineet Pande (Tue Sep 26 2006 - 11:14:31 CDT)
Grasp plugin...
- Luis Rosales (Wed Jul 06 2005 - 19:19:25 CDT)
- John Stone (Wed Jul 06 2005 - 10:14:05 CDT)
- Luis Rosales (Tue Jul 05 2005 - 20:17:12 CDT)
GRD file format
- Justin Gullingsrud (Tue Mar 22 2005 - 11:44:16 CST)
- Justin Gullingsrud (Tue Mar 22 2005 - 13:24:26 CST)
- Axel Kohlmeyer (Wed Mar 23 2005 - 01:33:31 CST)
- Axel Kohlmeyer (Tue Mar 22 2005 - 13:15:35 CST)
- Keith Refson (Tue Mar 22 2005 - 12:30:46 CST)
- Keith Refson (Tue Mar 22 2005 - 09:57:02 CST)
grid
- John Stone (Mon Jan 30 2006 - 10:15:29 CST)
- Vlad Cojocaru (Mon Jan 30 2006 - 07:15:56 CST)
- Pavel Macek (Mon Jan 30 2006 - 06:30:07 CST)
GRID maps visualization problems
- John Stone (Wed Nov 25 2009 - 15:05:30 CST)
- Björn Windshügel (Tue Nov 24 2009 - 12:22:47 CST)
- John Stone (Tue Nov 24 2009 - 09:12:30 CST)
- Sergey Samsonov (Tue Nov 24 2009 - 07:50:51 CST)
- Sergey Samsonov (Tue Nov 24 2009 - 07:35:51 CST)
Grid spacing in mdff
- Leonardo Trabuco (Tue Jun 15 2010 - 02:54:08 CDT)
Gromacs analysis tools for Namd output
- Kei Sit (Wed Feb 01 2012 - 17:33:01 CST)
- John Stone (Wed Feb 01 2012 - 11:47:43 CST)
- PAUL NEWMAN (Wed Feb 01 2012 - 11:41:40 CST)
Gromacs file formats gro, xtc and trr
- John Stone (Tue Oct 29 2002 - 16:14:37 CST)
- Marc Baaden (Tue Oct 29 2002 - 15:59:38 CST)
Gromacs reading: Why scaling??
- Axel Kohlmeyer (Thu Jul 31 2008 - 19:51:10 CDT)
- Nicolas (Thu Jul 31 2008 - 19:32:16 CDT)
- Nicolas Bigaouette (Thu Jul 31 2008 - 19:21:12 CDT)
- Axel Kohlmeyer (Thu Jul 31 2008 - 19:11:11 CDT)
- Nicolas Bigaouette (Thu Jul 31 2008 - 18:33:26 CDT)
Gromacs trajectories in VMD
- Gitte Iversen (Mon Nov 22 1999 - 01:22:02 CST)
gromacs trajectory file
- amin_at_imtech.res.in (Thu May 03 2012 - 02:51:23 CDT)
- ahmet yýldýrým (Thu May 03 2012 - 01:49:13 CDT)
gromacs trajectory files
- Axel Kohlmeyer (Thu Feb 21 2008 - 06:58:52 CST)
- maria goranovic (Thu Feb 21 2008 - 04:18:17 CST)
Gromacs XTC reader broken in 1.8beta version
- John Stone (Thu Aug 08 2002 - 12:46:19 CDT)
- Marc Baaden (Thu Aug 08 2002 - 10:34:56 CDT)
gromos96 files
- John Stone (Thu Mar 11 2004 - 14:35:03 CST)
- Franca Fraternali (Thu Mar 11 2004 - 03:47:43 CST)
- John Stone (Wed Mar 10 2004 - 15:56:08 CST)
- Franca Fraternali (Wed Mar 10 2004 - 04:55:47 CST)
group selection
- Justin Gullingsrud (Fri Mar 23 2001 - 09:38:46 CST)
- Justin Gullingsrud (Thu Mar 22 2001 - 12:32:23 CST)
- Yunfeng Hu (Mon Mar 19 2001 - 21:33:01 CST)
GTP topology file
- Peter Freddolino (Fri Mar 20 2009 - 12:03:01 CDT)
- tiziano gallo cassarino (Fri Mar 20 2009 - 08:54:12 CDT)
gui RMSD vs text RMSD calcs differ b/c ddiff backbone atom definitions
- Thomas C. Bishop (Mon Nov 19 2007 - 10:27:02 CST)
- Axel Kohlmeyer (Sat Nov 17 2007 - 00:11:54 CST)
- Thomas C. Bishop (Fri Nov 16 2007 - 17:12:27 CST)
gyration radius for a trajectory
- Axel Kohlmeyer (Fri Aug 25 2006 - 09:40:54 CDT)
- alexandra.marques_at_fc.up.pt (Fri Aug 25 2006 - 05:38:06 CDT)
gziped files
- Brian Bennion (Tue Mar 09 2004 - 13:38:44 CST)
- Zampighi, Lorenzo (Tue Mar 09 2004 - 13:08:17 CST)
- Brian Bennion (Tue Mar 09 2004 - 13:29:03 CST)
- Brian Bennion (Tue Mar 09 2004 - 11:08:55 CST)
- Axel Kohlmeyer (Tue Mar 09 2004 - 06:19:39 CST)
- John Stone (Mon Mar 08 2004 - 14:33:41 CST)
- Diss Romain (Mon Mar 08 2004 - 10:00:49 CST)
H Bond Plug-in Questions
- JC Gumbart (Thu Sep 29 2011 - 12:46:25 CDT)
- Alex Hahn (Thu Sep 29 2011 - 11:53:13 CDT)
H- bond
- emra Heshmati (Wed Oct 17 2007 - 12:16:47 CDT)
H-bond analysis
- Rupashree Shyama Ray (Wed Jun 29 2011 - 09:15:50 CDT)
H-Bond display in VMD
- John Stone (Thu Feb 08 2007 - 12:37:03 CST)
- Esther Brugger (Tue Feb 06 2007 - 12:41:47 CST)
H-bond distance measurement
- Aditya Padhi (Tue Nov 01 2011 - 03:53:57 CDT)
H-bond energy
- Peter Freddolino (Fri Jan 19 2007 - 07:51:34 CST)
- Himanshu Khandelia (Fri Jan 19 2007 - 07:41:54 CST)
- Peter Freddolino (Thu Jan 18 2007 - 18:23:24 CST)
- amit dong (Thu Jan 18 2007 - 18:13:11 CST)
H-Bond in VMD
- Esther Brugger (Thu Feb 08 2007 - 10:48:38 CST)
H-bond life time
- Ignacio Fernández Galván (Wed Sep 15 2010 - 07:24:14 CDT)
- Nicolas SAPAY (Wed Sep 15 2010 - 07:45:06 CDT)
- Nicolas SAPAY (Wed Sep 15 2010 - 03:22:09 CDT)
H-bond occupancy
- Irene Newhouse (Wed Nov 19 2008 - 12:23:58 CST)
H-bond plotting
- Liu, Zhanwu (Wed Oct 02 2002 - 09:54:38 CDT)
H-bonds
- Christoph Schneider (Mon Oct 06 1997 - 12:02:13 CDT)
- Peter Freddolino (Thu Apr 02 2009 - 09:27:02 CDT)
- Bernhard Knapp (Thu Apr 02 2009 - 06:27:25 CDT)
- Axel Kohlmeyer (Tue Apr 24 2007 - 11:28:31 CDT)
- amit dong (Tue Apr 24 2007 - 10:58:13 CDT)
- John Stone (Tue Dec 06 2005 - 16:34:22 CST)
- Paul D. Jones (Tue Dec 06 2005 - 15:18:31 CST)
H-bonds?
- Andrew Dalke (Wed Mar 05 1997 - 09:37:55 CST)
- Andrea Bernini (Wed Mar 05 1997 - 06:36:47 CST)
H-H bond in solvate
- Jorge Pikunic (Wed Jul 27 2005 - 14:25:09 CDT)
H-H dynamic bonds
- Axel Kohlmeyer (Mon Apr 23 2012 - 18:10:58 CDT)
- Q=A3ukasz_Pi=EAko=B6=22?= (Mon Apr 23 2012 - 17:21:42 CDT)
H2 bond distances calculation n displaying image
- Axel Kohlmeyer (Fri Mar 07 2008 - 10:16:05 CST)
- SENTHIL KUMAR (Thu Mar 06 2008 - 22:07:18 CST)
H_Bonds
- Axel Kohlmeyer (Mon Sep 28 2009 - 14:16:12 CDT)
- Katherine Parra (Mon Sep 28 2009 - 12:53:21 CDT)
handling electron density maps (.mrc and .map files)
- hinsen_at_dsm-mail.saclay.cea.fr (Sun Dec 19 2004 - 03:04:09 CST)
- Jim Nettles (Sat Dec 18 2004 - 18:20:39 CST)
- Amarda Shehu (Sat Dec 18 2004 - 15:29:30 CST)
Haptic devices for IMD
- gpat_at_bioacademy.gr (Fri Jan 20 2012 - 05:01:35 CST)
- Marc Baaden (Wed Jan 18 2012 - 12:27:55 CST)
- Axel Kohlmeyer (Wed Jan 18 2012 - 11:24:19 CST)
- John Stone (Wed Jan 18 2012 - 10:57:05 CST)
- gpat_at_bioacademy.gr (Wed Jan 18 2012 - 09:56:21 CST)
haptic devices VMD/NAMD/IMD
- Marc Baaden (Mon Oct 31 2011 - 17:56:30 CDT)
- Axel Kohlmeyer (Mon Oct 31 2011 - 16:55:56 CDT)
- John Stone (Mon Oct 31 2011 - 16:04:46 CDT)
- Thomas Bishop (Mon Oct 31 2011 - 15:52:48 CDT)
haptic interfaces
- John Stone (Thu Jun 06 2002 - 00:24:19 CDT)
- Will Sheffler (Thu Jun 06 2002 - 00:11:34 CDT)
haptic interfaces && namd on clusters
- John Stone (Thu Jun 06 2002 - 01:41:32 CDT)
- Will Sheffler (Thu Jun 06 2002 - 01:27:25 CDT)
haptics device "novint falcon"
- John Stone (Mon Dec 15 2008 - 09:26:40 CST)
- angel_at_cbuc.cl (Mon Dec 15 2008 - 09:13:31 CST)
hard ware stereo
- Dr. Daniel James White PhD (Mon Jan 27 2003 - 04:14:09 CST)
- MJR (Sun Jan 26 2003 - 21:14:35 CST)
- Y. U. Sasidhar (Sun Jan 26 2003 - 08:48:18 CST)
Hardware for NAMD / VMD machine
- Axel Kohlmeyer (Mon Jul 06 2009 - 16:46:40 CDT)
- Olve Peersen (Mon Jul 06 2009 - 13:39:53 CDT)
- John Stone (Mon Jul 06 2009 - 11:04:30 CDT)
- Olve Peersen (Fri Jul 03 2009 - 01:26:11 CDT)
hardware stereo with nVidia card
- Mads Nørregaard-Madsen (Thu Sep 04 2003 - 02:26:56 CDT)
- John Stone (Wed Sep 03 2003 - 22:44:38 CDT)
harmonic constraint when equilibrate the system
- Naiyin Yu (Wed Jan 13 2010 - 21:44:03 CST)
Has anyone done ILS successfully?
- Irene Newhouse (Wed Jun 02 2010 - 14:39:36 CDT)
hbond
- John Stone (Fri Mar 23 2007 - 14:08:04 CDT)
- jacopo.sgrignani_at_unifi.it (Fri Mar 23 2007 - 13:29:57 CDT)
- Anuradha Mittal (Mon Apr 11 2005 - 12:24:05 CDT)
Hbond analysis
- George Tzotzos (Tue Dec 20 2011 - 13:46:38 CST)
- Jernej Zidar (Fri Oct 14 2011 - 08:19:22 CDT)
- sajad falsafi (Fri Oct 14 2011 - 08:06:08 CDT)
- subrata paul (Fri Oct 14 2011 - 04:11:46 CDT)
- John Stone (Sat Mar 24 2007 - 11:13:25 CDT)
- jacopo.sgrignani_at_unifi.it (Sat Mar 24 2007 - 11:03:24 CDT)
hbond calculation
- Peter Freddolino (Mon Mar 26 2007 - 16:00:10 CDT)
- alexandra.marques_at_fc.up.pt (Mon Mar 26 2007 - 15:49:19 CDT)
hbond calculations
- Justin Gullingsrud (Tue Aug 29 2000 - 14:18:45 CDT)
- B. Bennion (Tue Aug 29 2000 - 10:49:16 CDT)
hBond colvars and patching
- Francesco Pietra (Sun Mar 06 2011 - 14:05:47 CST)
hBond component in colvars and patching
- Francesco Pietra (Sat Mar 05 2011 - 14:38:45 CST)
Hbond donor-acceptor distances
- Eduard Schreiner (Wed Oct 04 2006 - 06:15:38 CDT)
- Vlad Cojocaru (Tue Oct 03 2006 - 14:49:40 CDT)
Hbond in VMD
- hamid mosaddeghi (Fri Sep 02 2011 - 05:46:16 CDT)
- Axel Kohlmeyer (Wed Aug 31 2011 - 15:56:52 CDT)
- hamid mosaddeghi (Wed Aug 31 2011 - 14:50:19 CDT)
- Axel Kohlmeyer (Wed Aug 31 2011 - 13:27:21 CDT)
- Axel Kohlmeyer (Wed Aug 31 2011 - 13:16:11 CDT)
- hamid mosaddeghi (Wed Aug 31 2011 - 12:28:09 CDT)
- hamid mosaddeghi (Wed Aug 31 2011 - 12:29:01 CDT)
- Axel Kohlmeyer (Wed Aug 31 2011 - 07:45:45 CDT)
- hamid mosaddeghi (Wed Aug 31 2011 - 03:12:47 CDT)
hbond questions
- Miguel Ferreira (Mon Apr 16 2007 - 10:10:03 CDT)
Hbond rendering issue with VMD 1.9
- John Stone (Fri Mar 18 2011 - 13:09:41 CDT)
- Nicolas Sapay (Fri Mar 18 2011 - 04:58:27 CDT)
HBonds
- John Stone (Thu Oct 02 2003 - 14:55:14 CDT)
- J. Rui Rodrigues (Wed Oct 01 2003 - 17:16:37 CDT)
hbonds (how to count)
- Axel Kohlmeyer (Wed Oct 03 2007 - 06:29:53 CDT)
- Alessio Alexiadis (Wed Oct 03 2007 - 03:28:52 CDT)
Hbonds Analysis
- Aric Newton (Wed Feb 15 2012 - 18:11:58 CST)
- Axel Kohlmeyer (Wed Feb 15 2012 - 18:14:24 CST)
- John Stone (Wed Feb 15 2012 - 10:13:18 CST)
- Axel Kohlmeyer (Tue Feb 14 2012 - 15:36:13 CST)
- Aric Newton (Tue Feb 14 2012 - 14:22:27 CST)
Hbonds Analysis.
- John Stone (Thu Feb 16 2012 - 10:34:58 CST)
- Aric Newton (Thu Feb 16 2012 - 10:27:38 CST)
HBONDS bug?
- Axel Kohlmeyer (Tue Dec 14 2010 - 02:36:38 CST)
- Nicolas Tilmans (Mon Dec 13 2010 - 15:21:20 CST)
Hbonds calc with residue not in CHARMm
- Irene Newhouse (Thu Mar 04 2010 - 12:52:08 CST)
- Irene Newhouse (Sat Feb 27 2010 - 12:17:07 CST)
- JC Gumbart (Sat Feb 27 2010 - 12:05:18 CST)
- JC Gumbart (Sat Feb 27 2010 - 12:19:17 CST)
- Irene Newhouse (Sat Feb 27 2010 - 11:33:43 CST)
- JC Gumbart (Fri Feb 26 2010 - 22:34:42 CST)
- Irene Newhouse (Fri Feb 26 2010 - 14:40:28 CST)
hbonds count
- Axel Kohlmeyer (Wed Nov 30 2005 - 09:22:16 CST)
- J. Rui Rodrigues (Wed Nov 30 2005 - 07:28:41 CST)
- Michel Espinoza-Fonseca (Wed Nov 30 2005 - 06:34:26 CST)
Hbonds counting script
- li (Tue Jan 18 2005 - 01:06:58 CST)
HBonds criterion
- Peter Freddolino (Wed Sep 27 2006 - 17:20:57 CDT)
- François-Xavier Coudert (Wed Sep 27 2006 - 03:17:01 CDT)
- Peter Freddolino (Tue Sep 26 2006 - 16:06:03 CDT)
- Peter Freddolino (Tue Sep 26 2006 - 16:00:11 CDT)
- FX Coudert (Tue Sep 26 2006 - 14:38:39 CDT)
- Peter Freddolino (Tue Sep 26 2006 - 12:24:46 CDT)
- François-Xavier Coudert (Tue Sep 26 2006 - 11:18:22 CDT)
hbonds during trajectorywith vmd 1.8beta
- Vlad Cojocaru (Tue Dec 03 2002 - 04:05:59 CST)
- Justin Gullingsrud (Mon Dec 02 2002 - 09:15:20 CST)
- Vlad Cojocaru (Mon Dec 02 2002 - 03:05:44 CST)
Hbonds for a specific frame
- hamid mosaddeghi (Wed Aug 31 2011 - 01:23:37 CDT)
- Hitesh Patel (Tue Aug 30 2011 - 11:47:23 CDT)
hbonds problem
- JC Gumbart (Sat Feb 17 2007 - 19:57:17 CST)
- alexandra.marques_at_fc.up.pt (Sat Feb 17 2007 - 17:52:45 CST)
HBonds Representation
- John Stone (Fri Oct 13 2006 - 15:00:33 CDT)
- Dallas B. Warren (Tue Oct 10 2006 - 23:04:35 CDT)
hbonds time series
- John Stone (Thu Mar 03 2005 - 14:28:24 CST)
- syma khalid (Thu Mar 03 2005 - 09:33:34 CST)
hbonds.tcl selection problem in command-line
- Axel Kohlmeyer (Tue Dec 15 2009 - 06:17:46 CST)
- Nicola Giacche' (Tue Dec 15 2009 - 05:25:01 CST)
Head tracking with VRPN and VMD
- John Stone (Mon May 09 2005 - 10:07:04 CDT)
- Oliver Wenisch (Mon May 09 2005 - 09:57:43 CDT)
Headtracking software
- John Stone (Tue Nov 16 2010 - 15:23:14 CST)
- Biff Forbush (Tue Nov 16 2010 - 12:37:21 CST)
- Biff Forbush (Tue Nov 16 2010 - 11:01:00 CST)
- Axel Kohlmeyer (Tue Nov 16 2010 - 10:48:32 CST)
- Ajasja LjubetiÄ (Tue Nov 16 2010 - 09:00:27 CST)
- Tamás Borsos (Tue Nov 16 2010 - 04:25:04 CST)
Heat capacity
- zizi moradi (Sun May 24 2009 - 16:39:45 CDT)
helical construction
- Harish Lnu (Mon Dec 10 2007 - 15:31:31 CST)
- Axel Kohlmeyer (Mon Dec 10 2007 - 15:26:30 CST)
- Sanghyun Park (Mon Dec 10 2007 - 13:05:40 CST)
- Harish Lnu (Mon Dec 10 2007 - 13:16:39 CST)
- Harish Lnu (Mon Dec 10 2007 - 10:58:16 CST)
helical content script
- Ban Arn (Tue May 01 2012 - 09:23:52 CDT)
- Axel Kohlmeyer (Tue May 01 2012 - 07:28:05 CDT)
- francesco oteri (Tue May 01 2012 - 07:09:03 CDT)
- Ban Arn (Tue May 01 2012 - 05:55:51 CDT)
Helical King Angle
- Mike McCallum (Wed Feb 04 2004 - 11:07:39 CST)
- Saladino, Alex (Mon Feb 02 2004 - 16:41:45 CST)
Helical Tilt Angle
- Justin Gullingsrud (Wed Jan 28 2004 - 11:23:15 CST)
- Saladino, Alex (Wed Jan 28 2004 - 08:31:56 CST)
helices in coil
- Justin Gullingsrud (Wed Oct 30 2002 - 10:57:34 CST)
- John Stone (Wed Oct 30 2002 - 10:48:47 CST)
- B. Bennion (Tue Oct 29 2002 - 18:24:13 CST)
helicity score?
- BIN ZHANG (Thu Feb 19 2009 - 15:14:45 CST)
- Suman Chakrabarty (Thu Feb 19 2009 - 12:27:25 CST)
- BIN ZHANG (Thu Jan 15 2009 - 23:39:21 CST)
helix axes
- Balazs Jojart (Tue Mar 31 2009 - 14:28:40 CDT)
- Thomas C. Bishop (Tue Mar 31 2009 - 12:15:00 CDT)
- Peter Freddolino (Tue Mar 31 2009 - 12:16:57 CDT)
- Goutham (Tue Mar 31 2009 - 10:30:30 CDT)
- Wei Huang (Tue Mar 31 2009 - 10:06:20 CDT)
- Peter Freddolino (Tue Mar 31 2009 - 10:18:06 CDT)
- Peter Freddolino (Tue Mar 31 2009 - 09:51:11 CDT)
- Thomas C. Bishop (Tue Mar 31 2009 - 10:08:51 CDT)
- Thomas C. Bishop (Tue Mar 31 2009 - 09:44:21 CDT)
- Alison Grinthal (Tue Mar 31 2009 - 07:34:56 CDT)
helix axis for A-RNA
- Teletchéa Stéphane (Tue Jun 10 2003 - 08:11:35 CDT)
- Vlad Cojocaru (Tue Jun 10 2003 - 07:25:09 CDT)
Helix display
- Timothy Driscoll (Wed Oct 26 2005 - 17:52:39 CDT)
- John Stone (Wed Oct 26 2005 - 13:13:31 CDT)
- Stanley Lan (Wed Oct 26 2005 - 12:57:08 CDT)
- John Stone (Wed Oct 26 2005 - 10:04:26 CDT)
- Scott Thibault (Wed Oct 26 2005 - 09:55:10 CDT)
Helix motions
- ban arn (Wed Feb 09 2011 - 10:50:45 CST)
- Hurt, Darrell (NIH/NIAID) [E] (Mon Feb 07 2011 - 06:54:08 CST)
- ban arn (Mon Feb 07 2011 - 05:29:31 CST)
hello
- Eduard Schreiner (Fri Apr 29 2011 - 06:40:50 CDT)
- kanchi subbarao rao (Fri Apr 29 2011 - 05:58:05 CDT)
- Axel Kohlmeyer (Thu Apr 28 2011 - 10:01:18 CDT)
- kanchi subbarao rao (Thu Apr 28 2011 - 01:38:36 CDT)
Hello!
- John Stone (Mon Oct 10 2005 - 10:08:13 CDT)
- baogen duan (Sat Oct 08 2005 - 05:54:54 CDT)
- John Stone (Mon Sep 26 2005 - 11:56:43 CDT)
- baogen duan (Mon Sep 26 2005 - 08:52:05 CDT)
HELP
- Peter Freddolino (Fri Apr 07 2006 - 01:02:43 CDT)
- Praveen Madala (Thu Apr 06 2006 - 18:26:23 CDT)
Help about Contact Map plugin
- John Stone (Sat May 22 2004 - 00:25:19 CDT)
- Hua Wong (Tue May 18 2004 - 07:23:24 CDT)
Help about Contact Map plugin. Still puzzled by atom selection.
- Eamon Caddigan (Thu May 27 2004 - 17:48:01 CDT)
- Hua Wong (Thu May 27 2004 - 04:05:56 CDT)
help for modification into a small tcl script
- hl332_at_drexel.edu (Tue May 15 2007 - 10:32:17 CDT)
Help for the CAVE
- Christian Wohlschlager (Wed Nov 29 2006 - 08:19:11 CST)
Help in VMD
- John Stone (Thu Apr 22 2004 - 10:29:50 CDT)
- Sunando Datta (Wed Apr 21 2004 - 22:04:07 CDT)
help on making stereo diagram
- John Stone (Tue Jun 26 2007 - 15:46:56 CDT)
- Zhenwei Lu (Tue Jun 26 2007 - 15:25:59 CDT)
Help on MD animation with VMD
- John Stone (Wed Jan 04 2006 - 18:24:15 CST)
- yuhl (Tue Jan 03 2006 - 17:41:07 CST)
Help on script
- Liu, Zhanwu (Mon Mar 25 2002 - 11:09:49 CST)
- Christian Simon (Mon Mar 25 2002 - 08:06:27 CST)
- Liu, Zhanwu (Fri Mar 22 2002 - 14:16:53 CST)
- John Stone (Thu Mar 21 2002 - 22:55:31 CST)
help on trajectory density map
- John Stone (Tue May 29 2007 - 10:07:15 CDT)
- Kailee (Tue May 29 2007 - 07:43:46 CDT)
- John Stone (Mon May 28 2007 - 15:34:23 CDT)
- Axel Kohlmeyer (Mon May 28 2007 - 10:40:12 CDT)
- Kailee (Sun May 27 2007 - 12:54:12 CDT)
help on writing a tcl script
- Axel Kohlmeyer (Sat May 19 2007 - 12:28:29 CDT)
- Axel Kohlmeyer (Fri May 18 2007 - 11:22:27 CDT)
- Kailee (Fri May 18 2007 - 10:57:58 CDT)
Help using trajectory ca-distance script
- J. Rui Rodrigues (Fri Jan 07 2005 - 10:49:57 CST)
- Ricardo Czekster (Fri Jan 07 2005 - 11:30:47 CST)
Help with "move" command
- Pavan Ghatty (Mon Aug 21 2006 - 11:52:50 CDT)
Help with "move" command]
- Peter Freddolino (Mon Aug 21 2006 - 14:40:50 CDT)
help with animate read command
- Jim Pfaendtner (Tue Feb 05 2008 - 11:26:47 CST)
- John Stone (Tue Feb 05 2008 - 13:48:02 CST)
help with badwater script
- Jim Pfaendtner (Tue Aug 14 2007 - 15:29:12 CDT)
- Axel Kohlmeyer (Mon Aug 13 2007 - 19:08:30 CDT)
- Jim Pfaendtner (Mon Aug 13 2007 - 18:38:12 CDT)
help with BIOMT
- Brian Bennion (Fri Aug 12 2005 - 15:52:25 CDT)
- Chang, Christopher (Fri Aug 12 2005 - 14:57:51 CDT)
- John Stone (Fri Aug 12 2005 - 14:04:21 CDT)
- Steve Ding (Thu Aug 11 2005 - 18:10:13 CDT)
help with modifying script
- Philip Fowler (Mon Nov 07 2005 - 03:05:48 CST)
- syma (Wed Nov 02 2005 - 11:47:48 CST)
Help with psfgen
- Pavan Ghatty (Mon Aug 28 2006 - 08:09:46 CDT)
Help with running IED in VMD
- Kristina Woods (Tue Aug 30 2005 - 19:38:30 CDT)
Help with Tcl script
- Jan Saam (Wed Jun 13 2007 - 04:00:03 CDT)
- John Stone (Wed Jun 13 2007 - 03:23:27 CDT)
- Manali Mehendale (Fri Jun 08 2007 - 11:09:56 CDT)
Help, my molecule is being destroyed
- John Stone (Wed Sep 24 2008 - 15:46:14 CDT)
help: i can not type words in hostname textbox in imd
- John Stone (Thu Sep 08 2005 - 10:15:39 CDT)
- ÕÅ Îª (Thu Sep 08 2005 - 05:47:27 CDT)
- John Stone (Wed Sep 07 2005 - 10:00:53 CDT)
- ÕÅ Îª (Wed Sep 07 2005 - 02:00:28 CDT)
- ÕÅ Îª (Wed Sep 07 2005 - 01:36:29 CDT)
- John Stone (Mon Sep 05 2005 - 13:28:53 CDT)
- ÕÅ Îª (Mon Sep 05 2005 - 10:36:56 CDT)
Help: Installation Problem
- Lee Amy (Sun Mar 01 2009 - 05:41:39 CST)
- Axel Kohlmeyer (Sat Feb 28 2009 - 07:45:27 CST)
- Lee Amy (Sat Feb 28 2009 - 05:19:46 CST)
- Axel Kohlmeyer (Thu Feb 26 2009 - 10:57:30 CST)
- Lee Amy (Wed Feb 25 2009 - 09:45:12 CST)
Heme psfgen issue
- sseefeld_at_uwm.edu (Fri Aug 25 2006 - 00:33:10 CDT)
HETATM records are written as ATOM
- Leonardo Trabuco (Wed Jul 15 2009 - 17:32:07 CDT)
- Thomas Evangelidis (Wed Jul 15 2009 - 16:58:27 CDT)
Heteroatom entries
- Mithun Mitra (Tue Apr 27 2004 - 10:17:00 CDT)
heuristic bond computation
- Axel Kohlmeyer (Fri Feb 08 2008 - 08:03:31 CST)
- Olaf Lenz (Fri Feb 08 2008 - 01:33:37 CST)
- John Stone (Thu Feb 07 2008 - 22:37:45 CST)
- Axel Kohlmeyer (Thu Feb 07 2008 - 22:16:18 CST)
- Tony Sheh (Thu Feb 07 2008 - 21:58:15 CST)
hexagonal box
- dimka (Tue Apr 17 2007 - 12:11:09 CDT)
hi
- kanchi subbarao rao (Fri Jul 15 2011 - 04:43:19 CDT)
- Garf (Fri Nov 05 2004 - 15:29:42 CST)
- John Stone (Sun Jan 18 2004 - 23:44:30 CST)
- phubbard_at_post.its.mcw.edu (Sun Jan 18 2004 - 22:09:47 CST)
- Alfredo Valles (Sat Aug 23 2003 - 06:15:08 CDT)
Hi all,
- John Stone (Mon Oct 31 2011 - 16:10:14 CDT)
- Bo HÃ¸jen Justesen (Mon Oct 31 2011 - 05:47:22 CDT)
hi to all
- Bjoern Olausson (Thu May 19 2011 - 04:15:26 CDT)
- Salvatore Mario Cosseddu (Tue May 17 2011 - 15:06:51 CDT)
- Ajasja LjubetiÄ (Tue May 17 2011 - 12:27:50 CDT)
- kanchi subbarao rao (Tue May 17 2011 - 11:34:04 CDT)
hiding and renaming of graphical objects
- John Stone (Fri Apr 28 2006 - 12:45:21 CDT)
- Axel Kohlmeyer (Fri Apr 28 2006 - 12:32:59 CDT)
- Enzo Vitale (Fri Apr 28 2006 - 11:54:30 CDT)
HIERARCHY OF INTERACTIONS"
- Vlad Cojocaru (Wed Oct 20 2004 - 11:10:43 CDT)
High CPU usage with vmd-1.8.4b6 (99.9 %CPU ...) while using the FPS indicator
- Stéphane Teletchéa (Tue Jan 10 2006 - 10:08:22 CST)
- John Stone (Tue Jan 10 2006 - 09:54:52 CST)
- Stéphane Teletchéa (Tue Jan 10 2006 - 09:37:04 CST)
High quality movies, bmp frames and videomach=poor quality
- Bjoern Olausson (Wed Apr 21 2010 - 08:34:00 CDT)
- Jennifer Williams (Wed Apr 21 2010 - 05:57:11 CDT)
High res stl files
- John Stone (Tue Nov 28 2006 - 14:09:03 CST)
- Frederick Sachs (Tue Nov 28 2006 - 13:47:11 CST)
high resolution images
- John Stone (Fri May 19 2006 - 15:30:13 CDT)
- Samuel Flores (Fri May 19 2006 - 15:15:12 CDT)
- Axel Kohlmeyer (Thu May 11 2006 - 18:18:10 CDT)
- Samuel Flores (Thu May 11 2006 - 17:41:12 CDT)
high resolution ps or eps picture
- Gadi Oron (Thu May 13 2004 - 04:48:55 CDT)
- John Stone (Wed May 12 2004 - 20:26:54 CDT)
- wei (Wed May 12 2004 - 14:25:21 CDT)
High-end PC graphics boards for VMD...
- John Stone (Fri Jan 04 2002 - 17:23:23 CST)
High-Res and Eye 3D glasses and SynthaGram Monitors
- John Stone (Wed Sep 11 2002 - 17:22:56 CDT)
- Mads Nørregaard-Madsen (Wed Sep 11 2002 - 16:21:37 CDT)
- Jill Vickery (Wed Sep 11 2002 - 13:53:44 CDT)
Highlighting nearest atom ? (wrt to a tool)
- Marc Baaden (Thu Nov 13 2003 - 10:11:44 CST)
- John Stone (Wed Nov 12 2003 - 10:27:19 CST)
- Eugen Leitl (Wed Nov 12 2003 - 04:22:51 CST)
- John Stone (Tue Nov 11 2003 - 17:40:47 CST)
- Marc Baaden (Tue Nov 11 2003 - 16:09:17 CST)
Highlighting nearest atom ? (wrt to a tool) (fwd from eugen@leitl.org)
- Eugen Leitl (Wed Nov 12 2003 - 04:51:06 CST)
Hinge calculation in MD trajectory using Hingefind plug-in
- John Stone (Fri Feb 15 2008 - 15:40:29 CST)
- Jorge Hernandez Fernandez (Mon Feb 11 2008 - 13:02:59 CST)
hingefind
- Axel Kohlmeyer (Tue Jan 23 2007 - 11:23:17 CST)
- JC Gumbart (Tue Jan 23 2007 - 10:53:39 CST)
- li19104 (Tue Jan 23 2007 - 10:27:33 CST)
- Axel Kohlmeyer (Mon Jan 22 2007 - 19:27:05 CST)
- JC Gumbart (Mon Jan 22 2007 - 19:20:59 CST)
- Shirley Li (Mon Jan 22 2007 - 18:54:11 CST)
history in tcl/tk script
- Axel Kohlmeyer (Mon Jan 29 2007 - 09:12:13 CST)
- Axel Kohlmeyer (Fri Jan 26 2007 - 10:39:02 CST)
- Rita Cassia (Fri Jan 26 2007 - 06:22:32 CST)
Ho to save exactly the screen structure?
- Víctor (Mon Jun 15 2009 - 10:32:25 CDT)
- Axel Kohlmeyer (Mon Jun 15 2009 - 10:20:28 CDT)
- Peter Freddolino (Mon Jun 15 2009 - 09:45:56 CDT)
- Víctor (Mon Jun 15 2009 - 02:21:43 CDT)
- Axel Kohlmeyer (Sun Jun 14 2009 - 16:58:32 CDT)
- Víctor (Sun Jun 14 2009 - 15:35:55 CDT)
HOLE output visualization
- John Stone (Mon Mar 22 2004 - 10:16:37 CST)
- Oliver Beckstein (Wed Mar 17 2004 - 04:45:45 CST)
- Saladino, Alex (Tue Mar 16 2004 - 16:35:12 CST)
HOLE PROGRAM
- John Stone (Fri Aug 29 2008 - 02:08:14 CDT)
- Semorale (Wed Aug 27 2008 - 18:23:10 CDT)
Holo-Bench with VMD and Flystick2 and/or Phantom
- Dipesh Bhattarai (Tue Nov 17 2009 - 13:04:59 CST)
- Carsten Olbrich (Tue Nov 17 2009 - 12:03:56 CST)
HOOMD plugin
- Axel Kohlmeyer (Tue Jan 12 2010 - 13:11:32 CST)
- Benjamin Bouvier (Tue Jan 12 2010 - 11:04:08 CST)
HOOMD problems
- Axel Kohlmeyer (Fri Apr 20 2012 - 20:19:43 CDT)
- Axel Kohlmeyer (Fri Apr 20 2012 - 16:37:56 CDT)
- Engelman, Joshua (Fri Apr 20 2012 - 15:35:52 CDT)
- John Stone (Fri Apr 20 2012 - 15:51:16 CDT)
hot keys & save state
- Axel Kohlmeyer (Sun Feb 11 2007 - 13:06:08 CST)
- Yaser Khan (Sun Feb 11 2007 - 03:01:40 CST)
Hot repl1ca w4tches from 2008 Villa
- Tory Mohr (Wed Jul 30 2008 - 21:06:33 CDT)
Hot replica watches from 2008
- Rudy Puckett (Sun Apr 27 2008 - 14:53:15 CDT)
How can I add bonds ?
- Germain Salvato Vallverdu (Thu Jan 27 2011 - 16:38:08 CST)
- Germain Salvato Vallverdu (Thu Jan 27 2011 - 15:10:57 CST)
- Axel Kohlmeyer (Thu Jan 27 2011 - 14:49:19 CST)
- Germain Salvato Vallverdu (Thu Jan 27 2011 - 14:31:08 CST)
- Axel Kohlmeyer (Wed Jan 26 2011 - 10:02:42 CST)
- Germain Vallverdu (Wed Jan 26 2011 - 08:57:30 CST)
- Germain Salvato Vallverdu (Mon Jan 24 2011 - 09:01:39 CST)
- Axel Kohlmeyer (Mon Jan 24 2011 - 09:58:19 CST)
How can I change the wireframe look
- John Stone (Thu Mar 01 2001 - 14:21:30 CST)
- Jeff Taylor (Thu Mar 01 2001 - 14:12:50 CST)
how can I combine several selection into one selection by TCL
- John Stone (Mon Oct 10 2005 - 10:38:37 CDT)
- mashaojie163 (Fri Oct 07 2005 - 22:09:24 CDT)
- mashaojie163 (Wed Oct 05 2005 - 21:55:49 CDT)
How can I compile win32-vmd
- John Stone (Tue Oct 11 2005 - 17:03:21 CDT)
- mashaojie163 (Wed Oct 05 2005 - 22:26:27 CDT)
- mashaojie163 (Mon Oct 03 2005 - 20:16:15 CDT)
- John Stone (Mon Oct 03 2005 - 11:15:01 CDT)
- Michel Espinoza-Fonseca (Sun Oct 02 2005 - 05:33:45 CDT)
- mashaojie163 (Sun Oct 02 2005 - 00:18:11 CDT)
How can I draw secondary structures if I only have the carbon alpha coordinates
- Cojocaru, Vlad (Thu Aug 18 2011 - 14:46:45 CDT)
- Axel Kohlmeyer (Thu Aug 18 2011 - 13:27:42 CDT)
- Davide Provasi (Thu Aug 18 2011 - 13:00:15 CDT)
- John Stone (Thu Aug 18 2011 - 12:36:30 CDT)
- Mert Gür (Thu Aug 18 2011 - 12:20:30 CDT)
- Tim Travers (Thu Aug 18 2011 - 12:26:14 CDT)
- John Stone (Thu Aug 18 2011 - 11:48:01 CDT)
- Mert Gür (Thu Aug 18 2011 - 10:01:00 CDT)
How can I find the rotation matrix information?
- Myunggi Yi (Thu Jan 25 2007 - 16:11:12 CST)
How can I get .xyzr file or .xyzrn file?
- John Stone (Wed Sep 26 2007 - 16:38:04 CDT)
- ChenFei (Wed Sep 26 2007 - 02:27:51 CDT)
how can I get hole program
- mashaojie163 (Wed Sep 29 2004 - 20:06:05 CDT)
- John Stone (Wed Sep 29 2004 - 10:08:01 CDT)
- mashaojie163 (Tue Sep 28 2004 - 20:01:30 CDT)
- John Stone (Tue Sep 28 2004 - 14:59:18 CDT)
- mashaojie163 (Sat Sep 25 2004 - 19:34:17 CDT)
How can i obtain a force and trajectory data of a PHANTOM in IMD simulation
- John Stone (Wed Apr 18 2007 - 16:51:47 CDT)
- John Stone (Wed Apr 18 2007 - 16:50:16 CDT)
- preeda (Tue Apr 17 2007 - 09:44:30 CDT)
How can I operate on multiple .pdb structures in a list
- Axel Kohlmeyer (Wed Mar 23 2011 - 19:43:49 CDT)
- Anna Kuznetsova (Wed Mar 23 2011 - 18:49:02 CDT)
how can I read volume data in spider-format
- John Stone (Thu May 12 2005 - 20:09:06 CDT)
- Michael Radermacher (Thu May 12 2005 - 19:50:10 CDT)
How can i use the catdcd plugin with the VMD windows version?
- John Stone (Thu Feb 16 2006 - 13:42:30 CST)
- lily jin (Thu Feb 16 2006 - 13:19:50 CST)
How do I change details of a drawing style using the text interface?
- John Stone (Mon May 22 2006 - 17:52:31 CDT)
- Dr. Seth Olsen (Fri May 19 2006 - 21:52:05 CDT)
How do I overlap that specific nucletide between a protein and RNA?
- John Stone (Sun Apr 01 2007 - 23:07:46 CDT)
- zhangh1_at_umbc.edu (Sat Mar 31 2007 - 08:43:07 CDT)
How do I set the color scale for beta?
- John Stone (Fri Sep 24 2004 - 10:06:15 CDT)
- Brian Smith (Fri Sep 24 2004 - 01:43:31 CDT)
How do I share trajectory visualizations with other systems?
- Marc Q. Ma (Tue Nov 15 2005 - 06:50:29 CST)
- Kara Di Giorgio (Mon Nov 14 2005 - 21:15:19 CST)
how do I show contacts with XXX angstroms between a protein and a ligand?
- sajad falsafi (Tue Jun 07 2011 - 04:55:18 CDT)
- John Stone (Mon Jun 06 2011 - 13:45:23 CDT)
- John Stone (Mon Jun 06 2011 - 13:42:29 CDT)
- Craig Knox (Mon Jun 06 2011 - 11:33:42 CDT)
- sajad falsafi (Sun Jun 05 2011 - 08:06:56 CDT)
- Dennis N Bromley (Sat Jun 04 2011 - 21:24:26 CDT)
- Dennis N Bromley (Sat Jun 04 2011 - 13:09:48 CDT)
- Dennis N Bromley (Sat Jun 04 2011 - 12:14:40 CDT)
- Dennis N Bromley (Sat Jun 04 2011 - 12:27:05 CDT)
- sajad falsafi (Sat Jun 04 2011 - 08:26:14 CDT)
- Dennis N Bromley (Fri Jun 03 2011 - 22:27:58 CDT)
How do I use the plugin to read the DLPOLY HISTORY file?
- John Stone (Fri Jan 28 2005 - 15:50:45 CST)
- Low, John (Fri Jan 28 2005 - 15:38:03 CST)
How does VMD predict alpha helices
- John Stone (Tue Sep 28 2004 - 12:26:09 CDT)
- Scott Pendley (Tue Sep 28 2004 - 12:18:11 CDT)
How i can changue the charge of my protein
- Justin Gullingsrud (Mon Aug 02 2004 - 16:06:43 CDT)
- Alexis Salas (Mon Aug 02 2004 - 13:13:06 CDT)
how is dcd trajectory format !
- Emmanuel Vamvakopoulos (Fri Aug 27 1999 - 14:18:04 CDT)
how long do ILS runs take?
- Irene Newhouse (Mon Feb 08 2010 - 16:51:23 CST)
- Irene Newhouse (Mon Feb 08 2010 - 14:56:53 CST)
- John Stone (Mon Feb 08 2010 - 14:48:16 CST)
- Irene Newhouse (Mon Feb 08 2010 - 14:05:30 CST)
How to access the subset after 'fit' and 'move' ?
- John Stone (Mon May 08 2006 - 18:21:19 CDT)
- ziemys_at_ecr6.ohio-state.edu (Mon May 08 2006 - 09:50:55 CDT)
How to activate E2SUN emitter
- John Stone (Thu Feb 03 2005 - 14:20:28 CST)
- Harindar Keer (Thu Feb 03 2005 - 14:09:54 CST)
- John Stone (Tue Feb 01 2005 - 15:59:56 CST)
- Harindar Keer (Tue Feb 01 2005 - 15:42:31 CST)
- John Stone (Mon Jan 31 2005 - 09:44:28 CST)
- Harindar Keer (Sun Jan 30 2005 - 15:09:37 CST)
How to add atoms to a molecule?
- John Stone (Mon Nov 18 2002 - 00:35:43 CST)
- Paul Darwen (Tue Nov 12 2002 - 22:39:53 CST)
How to add heme to dowser plugin?
- Irene Newhouse (Tue Mar 31 2009 - 16:48:34 CDT)
- Irene Newhouse (Mon Mar 30 2009 - 20:39:59 CDT)
- Axel Kohlmeyer (Mon Mar 30 2009 - 20:24:24 CDT)
- Irene Newhouse (Mon Mar 30 2009 - 19:27:01 CDT)
How to add iond for RBCG model
- maming10002000 (Sun Mar 27 2011 - 10:23:27 CDT)
How to add ions for RBCG
- John Stone (Sun Mar 27 2011 - 23:42:36 CDT)
- maming10002000 (Sun Mar 27 2011 - 09:56:02 CDT)
How to add some small peptides to a water box randomly ?
- q=E2=BA=E9=C3=F7?= (Sun Apr 02 2006 - 21:00:57 CDT)
- Leandro Martínez (Sun Apr 02 2006 - 10:37:38 CDT)
- q=E2=BA=E9=C3=F7?= (Sun Apr 02 2006 - 09:57:26 CDT)
how to add spring between two atoms
- SONY kaur (Mon Feb 20 2012 - 13:05:40 CST)
- John Stone (Mon Feb 20 2012 - 13:17:23 CST)
How to add two parallel confinement wall
- Zhimin Xiong (Thu May 17 2007 - 09:41:48 CDT)
- Peter Freddolino (Wed May 16 2007 - 07:34:31 CDT)
- Zhimin Xiong (Wed May 16 2007 - 04:27:04 CDT)
How to align a protein normal to lipid bilayer
- Stéphane Téletchéa (Mon May 07 2007 - 03:44:36 CDT)
- John Stone (Sun May 06 2007 - 23:49:40 CDT)
- nur avneet (Sun May 06 2007 - 23:29:45 CDT)
- Axel Kohlmeyer (Fri May 04 2007 - 08:53:30 CDT)
- nur avneet (Fri May 04 2007 - 06:33:55 CDT)
How to align two peptide molecules
- Leonardo Trabuco (Fri Nov 03 2006 - 14:17:55 CST)
- Sunita Patel (Fri Nov 03 2006 - 10:14:20 CST)
how to block psfgen warning messages
- John Stone (Wed Mar 25 2009 - 23:34:08 CDT)
- Axel Kohlmeyer (Wed Mar 25 2009 - 17:17:19 CDT)
- Thomas Evangelidis (Wed Mar 25 2009 - 16:11:12 CDT)
How to build a crystal structure from a pdb file ?
- Karsten Suhre (Thu Sep 22 2005 - 02:07:16 CDT)
- Dallas B. Warren (Wed Sep 21 2005 - 18:20:02 CDT)
- John Stone (Wed Sep 21 2005 - 13:37:21 CDT)
- Chunhu Tan (Tue Sep 20 2005 - 19:43:41 CDT)
How to build a pseudo pore?
- Cesar Millan (Sat Sep 30 2006 - 11:36:15 CDT)
how to build an atomistic protein from a low resolution data.
- Margaret S. Cheung (Fri Sep 15 2006 - 20:08:41 CDT)
- Peter Freddolino (Fri Sep 15 2006 - 20:06:54 CDT)
- JC Gumbart (Fri Sep 15 2006 - 19:41:23 CDT)
- Margaret Shun Cheung (Fri Sep 15 2006 - 11:38:56 CDT)
how to caculate the hydrogen bonds occupancy?
- Axel Kohlmeyer (Sun May 13 2007 - 14:46:04 CDT)
- lnubiofox (Sun May 13 2007 - 09:38:37 CDT)
How to calculate end-to-end distance in VMD?
- Peter Freddolino (Tue Jan 15 2008 - 10:30:10 CST)
- Lili Peng (Mon Jan 14 2008 - 16:37:33 CST)
how to calculate hydrogen bond?
- Axel Kohlmeyer (Sun Jul 01 2007 - 21:34:56 CDT)
- lily jin (Fri Jun 29 2007 - 12:21:54 CDT)
how to calculate PBC box volume in VMD?
- Axel Kohlmeyer (Thu May 17 2012 - 02:31:06 CDT)
- Ajasja LjubetiÄ (Thu May 17 2012 - 02:25:15 CDT)
- Albert (Thu May 17 2012 - 01:26:36 CDT)
How to calculate the C alpha RMSD from NAMD trajectory
- John Stone (Fri Aug 03 2007 - 10:58:13 CDT)
- Shulin Zhuang (Fri Aug 03 2007 - 02:31:22 CDT)
How to calculate the volume of a molecule using vmd?
- John Stone (Thu May 15 2008 - 23:39:45 CDT)
- Khaled Barakat (Thu May 15 2008 - 22:17:36 CDT)
how to call dssp in a script
- Axel Kohlmeyer (Mon Aug 18 2008 - 10:42:14 CDT)
- John Stone (Mon Aug 18 2008 - 11:17:44 CDT)
- Yuan Feng (Sun Aug 17 2008 - 18:51:56 CDT)
how to center protein?
- Hitesh Patel (Tue Apr 24 2012 - 11:34:00 CDT)
- Chirag Vora (Tue Apr 24 2012 - 00:04:09 CDT)
How to change atom type and make it take effect immediately ï¼Ÿ
- Cun Zhang (Sat Nov 13 2010 - 08:17:24 CST)
how to change paramters in making movie
- John Stone (Wed Jun 14 2006 - 13:45:14 CDT)
- Dongsheng Zhang (Wed Jun 14 2006 - 12:33:09 CDT)
How to change the colour of isosurface
- John Stone (Mon Oct 31 2005 - 17:29:09 CST)
- Yang Zhenyu (Sat Oct 29 2005 - 06:42:13 CDT)
How to change the python include and linkage path in configure script
- Axel Kohlmeyer (Mon Feb 27 2012 - 13:33:18 CST)
- Haw-Zan Goh (Mon Feb 27 2012 - 12:15:06 CST)
How to change the VMD working Directory
- Axel Kohlmeyer (Thu Jul 14 2011 - 09:58:26 CDT)
- Esam Tolba (Thu Jul 14 2011 - 09:10:17 CDT)
How to change title of display window?
- Axel Kohlmeyer (Mon Jan 26 2009 - 12:13:13 CST)
- JT (Mon Jan 26 2009 - 12:26:30 CST)
- Axel Kohlmeyer (Sun Jan 25 2009 - 21:08:18 CST)
- JT (Sun Jan 25 2009 - 20:09:35 CST)
- John Stone (Wed Jan 17 2007 - 01:27:52 CST)
- Rob (Wed Jan 17 2007 - 01:13:23 CST)
how to change working directory of VMD?
- Nima Nouri (Wed Jul 20 2011 - 05:42:55 CDT)
- Esam Tolba (Tue Jul 19 2011 - 18:16:29 CDT)
- sajad falsafi (Tue Jul 19 2011 - 14:02:57 CDT)
- Esam Tolba (Mon Jul 18 2011 - 14:02:17 CDT)
How to choose part of the volume data for isosurface visualization?
- Axel Kohlmeyer (Tue Jan 08 2008 - 11:37:29 CST)
- Yinglong Miao (Tue Jan 08 2008 - 10:41:02 CST)
How to cionize DNA? example needed!
- Bikan Tan (Mon Aug 08 2011 - 18:59:19 CDT)
How to circumvent: FATAL ERROR: Periodic cell has become too small for original patch grid!
- Maxim Paliy (Mon Apr 07 2008 - 12:36:24 CDT)
How to color atom by charge
- Axel Kohlmeyer (Thu May 14 2009 - 07:01:32 CDT)
- loc duong ding (Thu May 14 2009 - 00:46:38 CDT)
how to color one residue with two or three different colors?
- John Stone (Mon Mar 04 2002 - 15:48:37 CST)
- Margaret Cheung (Sat Mar 02 2002 - 20:03:45 CST)
How to color the atoms based on the stress
- Axel Kohlmeyer (Wed Jun 28 2006 - 05:46:21 CDT)
- Zhenyu Yang (Wed Jun 28 2006 - 02:17:09 CDT)
How to compile the source of VMD1.8.7 on linux system
- John Stone (Fri Aug 07 2009 - 00:24:09 CDT)
- Aurum Bai (Fri Aug 07 2009 - 00:10:40 CDT)
How to compute excluded volume using volmap?
- Axel Kohlmeyer (Sun May 24 2009 - 14:32:20 CDT)
- Suman Chakrabarty (Sun May 24 2009 - 14:12:06 CDT)
- Suman Chakrabarty (Tue May 12 2009 - 16:33:11 CDT)
- Axel Kohlmeyer (Tue May 12 2009 - 08:47:43 CDT)
- Suman Chakrabarty (Tue May 12 2009 - 07:53:12 CDT)
- Suman Chakrabarty (Sat May 09 2009 - 14:46:31 CDT)
How to compute the angles
- li (Sun Jan 23 2005 - 23:08:08 CST)
how to configure PROPKA3 in VMD 1.91?
- Albert (Mon Mar 12 2012 - 15:11:39 CDT)
how to configure Tachyon image render size?
- Axel Kohlmeyer (Mon Jan 30 2012 - 15:46:42 CST)
- Jeffrey Potoff (Mon Jan 30 2012 - 14:14:09 CST)
- Albert (Mon Jan 30 2012 - 11:52:02 CST)
How to configure the joystick in VMD of linux version?
- leepersonpp (Tue Jul 26 2005 - 21:48:58 CDT)
how to connect chains using psfgen
- Peter Freddolino (Wed Apr 04 2007 - 11:20:30 CDT)
- Philipp Schoen1 (Wed Apr 04 2007 - 09:49:10 CDT)
How to convert DCD file into Amber trajectory file in vmd
- Jianping Lin (Wed Mar 04 2009 - 11:41:14 CST)
- John Stone (Tue Mar 03 2009 - 18:35:31 CST)
- Jianping Lin (Tue Mar 03 2009 - 17:30:33 CST)
how to convert Desmond trajectories into PDB in text mode?
- Axel Kohlmeyer (Thu Nov 24 2011 - 14:48:44 CST)
- mail gromacs (Thu Nov 24 2011 - 13:09:40 CST)
how to convert X_PLOR to CHARMM?
- Lisa Brown (Fri Mar 25 2011 - 11:01:26 CDT)
how to creat a file containing only one potassium ion
- Michel Espinoza-Fonseca (Mon Apr 11 2005 - 16:08:26 CDT)
- M SH (Mon Apr 11 2005 - 14:50:27 CDT)
How to create bonds in VMD?
- Axel Kohlmeyer (Fri Apr 01 2011 - 11:59:54 CDT)
- Saketh Bharadwaja (Fri Apr 01 2011 - 11:07:21 CDT)
how to create dityrosine links
- Roman Petrenko (Sun Jul 27 2008 - 04:14:20 CDT)
- JC Gumbart (Sat Jul 26 2008 - 20:21:14 CDT)
- Roman Petrenko (Sat Jul 26 2008 - 17:47:52 CDT)
How to deal with this sugar residues though psfgen?
- q=E2=BA=E9=C3=F7?= (Mon Apr 17 2006 - 06:22:22 CDT)
How to delete a residue
- John Stone (Wed Oct 27 2010 - 12:53:23 CDT)
- Kshatresh Dutta Dubey (Tue Oct 26 2010 - 00:51:45 CDT)
How to delete anwanted waters in a special area ?
- Axel Kohlmeyer (Wed Jun 25 2008 - 11:51:29 CDT)
- Leonhard Henkes (Wed Jun 25 2008 - 07:31:10 CDT)
how to delete atoms from the command line?
- Nicolas Sapay (Tue May 10 2005 - 09:59:30 CDT)
- John Stone (Tue May 10 2005 - 09:58:51 CDT)
- Nicolas Sapay (Tue May 10 2005 - 07:30:50 CDT)
How to delete selected atoms from a molecule
- Axel Kohlmeyer (Mon Nov 06 2006 - 09:30:58 CST)
- Javaria Ahmed (Mon Nov 06 2006 - 07:22:54 CST)
How to determine distribution of the orientation of a molecule
- John Stone (Thu May 05 2005 - 10:05:16 CDT)
- Raj Gupta (Thu May 05 2005 - 07:31:56 CDT)
How to disable automatic view rotations?
- John Stone (Wed Jul 30 2008 - 15:50:09 CDT)
- John Stone (Wed Jul 30 2008 - 15:47:05 CDT)
- Roman Petrenko (Wed Jul 30 2008 - 15:37:41 CDT)
- John Stone (Wed Jul 30 2008 - 14:34:15 CDT)
- Roman Petrenko (Wed Jul 30 2008 - 13:08:31 CDT)
How to disable CUDA in VMD-1.9?
- Ismail, Mohd F. (Wed Nov 30 2011 - 22:31:31 CST)
- John Stone (Wed Nov 30 2011 - 21:18:23 CST)
- Joaim Swedberg (Wed Nov 30 2011 - 20:29:48 CST)
How to discard certain atoms
- Axel Kohlmeyer (Sun May 25 2008 - 07:59:23 CDT)
- politr_at_huji.ac.il (Sun May 25 2008 - 05:50:43 CDT)
How to display a periodic image using TCL commands?
- John Stone (Wed Feb 22 2006 - 11:11:23 CST)
- Nicolas Sapay (Wed Feb 22 2006 - 11:08:28 CST)
how to display bond btw backbone atom and sidechain atom
- Boris Steipe (Wed Nov 24 2010 - 07:57:41 CST)
- Axel Kohlmeyer (Wed Nov 24 2010 - 06:07:32 CST)
- ³Ì²ýÀû (Wed Nov 24 2010 - 04:58:37 CST)
How to display boundary crossing bonds?
- Axel Kohlmeyer (Wed Jul 04 2007 - 11:51:57 CDT)
- Zhimin Xiong (Tue Jul 03 2007 - 23:58:00 CDT)
How to display Chain name in Labels
- John Stone (Thu Dec 06 2007 - 23:53:32 CST)
- TRINH Minh Hieu (Fri Nov 30 2007 - 07:33:57 CST)
how to display dcd file written with catdcd using an index file
- Irene Newhouse (Tue Oct 30 2007 - 13:30:26 CDT)
- John Stone (Fri Oct 26 2007 - 15:50:55 CDT)
- Irene Newhouse (Fri Oct 26 2007 - 14:08:44 CDT)
how to display PDB with MODEL card
- John Stone (Fri Jan 21 2005 - 17:32:35 CST)
- Sichun Yang (Tue Jan 18 2005 - 22:29:20 CST)
How to display real time when reading trr file?
- Axel Kohlmeyer (Wed Jan 20 2010 - 05:06:06 CST)
- Cun Zhang (Wed Jan 20 2010 - 01:59:20 CST)
- Cun Zhang (Wed Jan 20 2010 - 01:59:16 CST)
How to display text on helices ?
- John Stone (Wed Jan 11 2006 - 12:58:00 CST)
- Stéphane Teletchéa (Wed Jan 11 2006 - 02:49:16 CST)
- Stéphane Teletchéa (Tue Jan 10 2006 - 08:47:37 CST)
- John Stone (Mon Jan 09 2006 - 11:50:38 CST)
- Stéphane Teletchéa (Mon Jan 09 2006 - 11:45:17 CST)
how to display the full molecule when use "within" option?
- Axel Kohlmeyer (Fri Feb 03 2012 - 06:32:34 CST)
- Ajasja LjubetiÄ (Fri Feb 03 2012 - 06:21:29 CST)
- Albert (Fri Feb 03 2012 - 05:31:10 CST)
how to display the periodic box in VMD
- Olaf Lenz (Fri Oct 09 2009 - 01:49:07 CDT)
- Axel Kohlmeyer (Thu Oct 08 2009 - 14:30:27 CDT)
- Lan He (Thu Oct 08 2009 - 13:29:10 CDT)
- Lan He (Thu Oct 08 2009 - 10:46:37 CDT)
- Olaf Lenz (Thu Oct 08 2009 - 02:03:54 CDT)
- Axel Kohlmeyer (Wed Oct 07 2009 - 18:39:55 CDT)
- Lan He (Wed Oct 07 2009 - 17:51:41 CDT)
how to do acetylated lysine in VMD
- Vo Cam Quy (Fri Feb 05 2010 - 14:27:46 CST)
how to download & install QMTool plugin
- Axel Kohlmeyer (Wed Apr 14 2010 - 10:42:52 CDT)
- Russell, John Thomas (Wed Apr 14 2010 - 09:33:33 CDT)
how to draw different set of points for different frames in a trajectory my script does not work
- maria goranovic (Wed Jul 13 2011 - 08:29:18 CDT)
- Axel Kohlmeyer (Tue Jul 12 2011 - 15:17:50 CDT)
- maria goranovic (Tue Jul 12 2011 - 14:19:51 CDT)
- John Stone (Tue Jul 12 2011 - 13:19:29 CDT)
- maria goranovic (Mon Jul 11 2011 - 04:12:11 CDT)
- Axel Kohlmeyer (Fri Jul 08 2011 - 11:20:11 CDT)
- maria goranovic (Fri Jul 08 2011 - 09:56:14 CDT)
- Axel Kohlmeyer (Fri Jul 08 2011 - 08:31:17 CDT)
- maria goranovic (Fri Jul 08 2011 - 07:59:10 CDT)
how to draw the bonds in VMD?
- Axel Kohlmeyer (Sun Sep 07 2008 - 13:41:30 CDT)
- Alfred Shaohui Zheng (Sat Sep 06 2008 - 03:07:16 CDT)
How to efficiently update a surface
- John Stone (Thu Dec 01 2005 - 15:06:44 CST)
- Mario Valle (Wed Nov 30 2005 - 04:01:49 CST)
- Axel Kohlmeyer (Tue Nov 29 2005 - 13:11:17 CST)
- Justin Gullingsrud (Tue Nov 29 2005 - 11:25:10 CST)
- Mario Valle (Tue Nov 29 2005 - 10:08:21 CST)
How to embed 3-D image into powerpoint
- John Stone (Tue Aug 05 2008 - 14:17:47 CDT)
- Axel Kohlmeyer (Mon Aug 04 2008 - 15:57:41 CDT)
- Claw Isthelaw (Mon Aug 04 2008 - 15:15:33 CDT)
How to enable Python on Windows XP
- John Stone (Mon Aug 02 2004 - 10:00:44 CDT)
- DePuy (Sat Jul 31 2004 - 17:12:20 CDT)
- Ahmet Bakan (Fri Jul 30 2004 - 16:30:09 CDT)
how to enable the vmd cachemode in .vmdrc?
- John Stone (Mon May 22 2006 - 15:15:57 CDT)
- Guo Zhi (Sun May 21 2006 - 02:25:38 CDT)
how to enlarge the menu font?
- John Stone (Fri Jan 27 2012 - 01:42:20 CST)
- Ajasja LjubetiÄ (Fri Jan 27 2012 - 01:29:11 CST)
- Albert (Fri Jan 27 2012 - 01:33:48 CST)
- Albert (Fri Jan 27 2012 - 00:18:36 CST)
how to export into postscript with MultiPlot in tcl mode?
- Johannes Müllegger (Mon Jun 23 2008 - 11:23:24 CDT)
- Axel Kohlmeyer (Mon Jun 23 2008 - 10:03:21 CDT)
- Sebastian Stolzenberg (Sun Jun 22 2008 - 19:01:53 CDT)
how to extract atom information?
- Axel Kohlmeyer (Thu Nov 16 2006 - 21:32:41 CST)
- Neelanjana Sengupta (Thu Nov 16 2006 - 20:44:11 CST)
- Axel Kohlmeyer (Thu Nov 16 2006 - 20:08:01 CST)
- Myunggi Yi (Thu Nov 16 2006 - 19:07:49 CST)
how to find the sign of the dihedral angle (full message).
- JT (Sat Mar 14 2009 - 03:21:33 CDT)
- karthigeyan karthigeyantp (Sat Mar 14 2009 - 00:23:47 CDT)
how to fix structural alignment pdbs
- Axel Kohlmeyer (Tue Jan 31 2012 - 07:22:44 CST)
- thereal sisterdot (Tue Jan 31 2012 - 03:04:52 CST)
How to generate a monolayer in VMD
- Nilesh Ingle (Thu Oct 08 2009 - 21:58:50 CDT)
- daniel aguayo (Tue Oct 06 2009 - 13:16:43 CDT)
- Leandro Martínez (Tue Oct 06 2009 - 06:16:24 CDT)
- John Stone (Mon Oct 05 2009 - 20:54:03 CDT)
- Leandro Martínez (Mon Oct 05 2009 - 19:24:44 CDT)
- Nilesh Ingle (Mon Oct 05 2009 - 18:55:37 CDT)
How to generate an index (.ind) file?
- Carsten Olbrich (Fri Dec 05 2008 - 01:30:17 CST)
- Anirban Ghosh (Fri Dec 05 2008 - 00:07:49 CST)
How to generate more segments?
- John Stone (Tue Sep 09 2008 - 01:46:41 CDT)
- mishacat_at_udm.ru (Tue Sep 09 2008 - 01:30:05 CDT)
How to get a membran.psf from membrane.pdb?
- John Stone (Mon Oct 24 2005 - 17:23:55 CDT)
- Weidong Xin (Tue Oct 18 2005 - 03:42:58 CDT)
How to get all the angle combinations?
- John Stone (Mon Dec 22 2008 - 10:37:35 CST)
- BIN ZHANG (Wed Dec 17 2008 - 23:07:16 CST)
How to get number of electrons of an atom in VMD?
- BIN ZHANG (Mon Dec 08 2008 - 15:31:42 CST)
- John Stone (Mon Dec 08 2008 - 15:35:39 CST)
how to get pqr format file with catdcd
- jnsong (Wed Jun 22 2011 - 02:22:59 CDT)
- John Stone (Tue Jun 21 2011 - 09:10:16 CDT)
- jnsong (Mon Jun 20 2011 - 22:00:33 CDT)
- John Stone (Mon Jun 20 2011 - 15:34:01 CDT)
- jnsong (Sat Jun 18 2011 - 01:25:15 CDT)
How to get rid of default patch for NTER and CTER
- Aaron.Oakley_at_csiro.au (Sun Jan 18 2009 - 19:24:36 CST)
- Schreiner Eduard (Sun Jan 18 2009 - 19:11:32 CST)
- Jianping Lin (Sun Jan 18 2009 - 15:45:34 CST)
How to get rubber-like surface with Tachyon renderer
- Axel Kohlmeyer (Mon Feb 25 2008 - 11:21:09 CST)
- John Stone (Mon Feb 25 2008 - 11:33:21 CST)
- Axel Kohlmeyer (Mon Feb 25 2008 - 10:13:33 CST)
- Alexander Metz (Mon Feb 25 2008 - 09:37:02 CST)
how to get temperature fluctuations
- maria goranovic (Thu Nov 20 2008 - 08:36:06 CST)
How to get the coordinates of periodic image!
- Neelanjana Sengupta (Wed Oct 25 2006 - 19:33:52 CDT)
- John Stone (Wed Oct 25 2006 - 13:55:20 CDT)
How to get the whole H2O molecule in a domain?
- Peter Freddolino (Wed Apr 18 2007 - 12:10:13 CDT)
- Peter Freddolino (Wed Apr 18 2007 - 12:07:52 CDT)
- Philipp Schoen1 (Wed Apr 18 2007 - 11:55:03 CDT)
How to hide graphics molecules in a python script?
- Dr. Seth Olsen (Thu Sep 21 2006 - 20:44:28 CDT)
how to identify DNA-protein interaction interface
- Thomas C. Bishop (Thu Apr 24 2008 - 09:40:50 CDT)
- BERGY (Thu Apr 24 2008 - 05:42:53 CDT)
How to image molecules back into a PBC box?
- Axel Kohlmeyer (Wed Feb 16 2005 - 06:02:17 CST)
- Olaf Lenz (Wed Feb 16 2005 - 03:08:15 CST)
- Xiongce Zhao (Tue Feb 15 2005 - 09:09:33 CST)
How to improve the running of VMD with data on remote servers
- John Stone (Thu Oct 30 2003 - 13:26:15 CST)
- Robert Campbell (Thu Oct 30 2003 - 11:37:37 CST)
- John Stone (Tue Oct 28 2003 - 08:57:08 CST)
- Fred Salsbury (Mon Oct 27 2003 - 17:52:47 CST)
How to install the inorganicbuilder on Windows vista
- John Stone (Fri Jan 30 2009 - 08:28:04 CST)
- Hideya Nakamura (Thu Jan 29 2009 - 19:41:45 CST)
How to install VMD on AIX5 OpenGL server
- John Stone (Wed Feb 04 2004 - 13:06:43 CST)
- John Stone (Tue Jan 20 2004 - 10:44:30 CST)
- Dai Ling (Tue Jan 20 2004 - 04:52:47 CST)
How to ionize a Shape Based CG Model?
- Peter Freddolino (Mon Sep 15 2008 - 10:21:44 CDT)
- Anton Arkhipov (Mon Sep 15 2008 - 10:15:23 CDT)
- L. Michel Espinoza-Fonseca (Mon Sep 15 2008 - 10:02:27 CDT)
- Anirban Ghosh (Mon Sep 15 2008 - 08:09:07 CDT)
- Anton Arkhipov (Mon Sep 15 2008 - 09:10:04 CDT)
how to label the distances using tk console mode
- Schreiner Eduard (Tue Dec 15 2009 - 20:40:02 CST)
- Eric H. Lee (Tue Dec 15 2009 - 20:54:17 CST)
- YangMingjun (Tue Dec 15 2009 - 20:39:49 CST)
- Eric H. Lee (Tue Dec 15 2009 - 20:09:58 CST)
- YangMingjun (Tue Dec 15 2009 - 19:24:00 CST)
How to let vmd do secondary structure judgement for each frame and render it on play movie?
- Guo Zhi (Sat Dec 16 2006 - 02:59:41 CST)
- John Stone (Sat Dec 16 2006 - 02:30:04 CST)
- Guo Zhi (Sat Dec 16 2006 - 00:31:00 CST)
- John Stone (Fri Dec 15 2006 - 23:44:27 CST)
- Guo Zhi (Fri Dec 15 2006 - 22:47:23 CST)
how to load a molecule in pdb format and save in mol2 format in batch mode
- Axel Kohlmeyer (Mon Jan 14 2008 - 03:39:58 CST)
- Sridhar Acharya (Mon Jan 14 2008 - 01:32:33 CST)
how to load a state from the command line
- Ondrej Marsalek (Wed May 20 2009 - 10:18:24 CDT)
- Axel Kohlmeyer (Wed May 20 2009 - 09:51:47 CDT)
- maria goranovic (Wed May 20 2009 - 09:21:13 CDT)
how to load an external file to user field
- Axel Kohlmeyer (Thu Oct 01 2009 - 16:12:41 CDT)
- Sun Yicheng (Thu Oct 01 2009 - 10:28:39 CDT)
how to load Orient package in VMD
- Axel Kohlmeyer (Wed Aug 24 2011 - 16:57:50 CDT)
- Jiao, Dian NMN (-EXP) (Wed Aug 24 2011 - 16:55:23 CDT)
- Axel Kohlmeyer (Wed Aug 24 2011 - 16:47:49 CDT)
- Jiao, Dian NMN (-EXP) (Wed Aug 24 2011 - 15:24:42 CDT)
How to load packages from tcllib into VMD
- Axel Kohlmeyer (Tue Aug 21 2007 - 08:13:00 CDT)
- Cesar Luis Avila (Mon Aug 20 2007 - 17:22:53 CDT)
- Axel Kohlmeyer (Mon Aug 20 2007 - 18:43:53 CDT)
- Cesar Luis Avila (Mon Aug 20 2007 - 14:59:49 CDT)
how to look for overlaps?
- John Stone (Thu May 06 2004 - 21:51:27 CDT)
- Olya Kravchenko (Thu May 06 2004 - 14:55:05 CDT)
How to make a disulphide bond
- John Stone (Tue May 16 2006 - 13:12:42 CDT)
- lily jin (Tue May 16 2006 - 13:02:51 CDT)
how to make a mivie by VMD
- Eric H. Lee (Wed Mar 25 2009 - 20:37:16 CDT)
- Anton Arkhipov (Wed Mar 25 2009 - 18:00:10 CDT)
- Eric H. Lee (Wed Mar 25 2009 - 17:44:43 CDT)
- Lan He (Wed Mar 25 2009 - 17:33:41 CDT)
How to make a movie in VMD using principle component analysis
- John Stone (Wed Mar 28 2007 - 14:43:14 CDT)
- gadde suneetha (Wed Mar 28 2007 - 07:42:56 CDT)
how to make a movie of 2 or more trajectories
- Axel Kohlmeyer (Fri Jun 27 2008 - 20:57:18 CDT)
- parth singh (Thu Jun 26 2008 - 15:59:08 CDT)
how to make a movie using Principal Component Analysis
- Axel Kohlmeyer (Wed May 16 2007 - 20:16:00 CDT)
- gadde suneetha (Wed May 16 2007 - 20:02:48 CDT)
How to make a selection in atomselect using an element in a list?
- Axel Kohlmeyer (Wed Jul 08 2009 - 11:17:14 CDT)
- maria goranovic (Wed Jul 08 2009 - 10:39:39 CDT)
how to make a snapshot that...
- John Stone (Mon Sep 27 2004 - 09:29:40 CDT)
- Margaret Shun Cheung (Fri Sep 24 2004 - 10:48:09 CDT)
- John Stone (Mon Sep 20 2004 - 16:35:03 CDT)
- Margaret Shun Cheung (Mon Sep 20 2004 - 16:29:50 CDT)
- Margaret Shun Cheung (Mon Sep 20 2004 - 14:46:29 CDT)
- John Stone (Mon Sep 20 2004 - 15:18:47 CDT)
- John Stone (Mon Sep 20 2004 - 13:23:14 CDT)
- Margaret Shun Cheung (Mon Sep 20 2004 - 11:09:59 CDT)
How to make bold font?
- Robert Brunner (Thu Jun 01 2006 - 23:04:12 CDT)
- John Stone (Thu Jun 01 2006 - 15:28:27 CDT)
- Dow Hurst DPHURST (Thu Jun 01 2006 - 09:12:20 CDT)
- John Stone (Tue May 23 2006 - 13:59:41 CDT)
- Gustavo Seabra (Tue May 23 2006 - 13:40:02 CDT)
how to make default background color to white
- Axel Kohlmeyer (Wed Mar 09 2011 - 04:31:00 CST)
- Sushil Mishra (Wed Mar 09 2011 - 01:03:47 CST)
- Gianluca Interlandi (Tue Mar 08 2011 - 12:13:10 CST)
- Axel Kohlmeyer (Tue Mar 08 2011 - 10:45:40 CST)
- Ajasja LjubetiÄ (Tue Mar 08 2011 - 10:29:54 CST)
- Manoj Yadav (Tue Mar 08 2011 - 10:13:31 CST)
- Sushil Mishra (Tue Mar 08 2011 - 09:11:33 CST)
how to make IED work?
- Vlad Cojocaru (Fri Oct 14 2005 - 14:33:56 CDT)
How to make movie with .crd files?
- Nuno Ricardo Loureiro Ferreira (Fri Dec 15 2006 - 03:51:01 CST)
- Nuno Ricardo Loureiro Ferreira (Wed Dec 13 2006 - 03:31:54 CST)
- bertrand russell (Wed Dec 13 2006 - 02:36:23 CST)
how to make movies from HISTORY file
- Axel Kohlmeyer (Wed Jun 07 2006 - 07:01:03 CDT)
- Come On (Wed Jun 07 2006 - 04:20:15 CDT)
- John Stone (Tue Jun 06 2006 - 13:20:32 CDT)
- Come On (Tue Jun 06 2006 - 13:11:55 CDT)
How to make Porcupine plots in VMD
- Surendra Kumar Jain (Tue Feb 16 2010 - 13:28:07 CST)
how to make smooth movies ?
- Axel Kohlmeyer (Fri Mar 07 2008 - 10:40:59 CST)
- John Stone (Fri Mar 07 2008 - 10:52:15 CST)
- maria goranovic (Fri Mar 07 2008 - 07:13:53 CST)
how to make the picture size suitable for the image size in pov file ?
- Cun Zhang (Fri Dec 31 2010 - 20:08:42 CST)
- Cun Zhang (Thu Dec 30 2010 - 20:52:14 CST)
how to make unique chain pdb identifier of virus capsid 60 mer?
- Jim Phillips (Mon Apr 19 2004 - 11:24:14 CDT)
- John Stone (Sun Apr 18 2004 - 19:34:43 CDT)
- Dr. Daniel James White PhD (Thu Apr 15 2004 - 09:00:24 CDT)
how to make user input during runtime of a tcl program using TkConsole?
- Axel Kohlmeyer (Fri Aug 10 2007 - 10:20:47 CDT)
- John Stone (Fri Aug 10 2007 - 10:25:55 CDT)
- Philipp Schön (Fri Aug 10 2007 - 10:14:46 CDT)
How to make VMD to work with Phantom Haptic Device
- John Stone (Tue May 11 2004 - 09:41:54 CDT)
- Fung Wai Keung (Tue May 11 2004 - 06:29:24 CDT)
How to make VMD work with Phantom haptic device?
- John Stone (Tue Mar 16 2004 - 10:33:33 CST)
- John Stone (Mon Mar 08 2004 - 10:14:42 CST)
- Fung Wai Keung (Mon Mar 08 2004 - 01:51:40 CST)
how to make whole biological unit / virus capsid from pdb BIOMT records
- John Stone (Sun Apr 18 2004 - 19:29:30 CDT)
- John Stone (Tue Apr 06 2004 - 09:59:56 CDT)
- Dr. Daniel James White PhD (Tue Apr 06 2004 - 04:12:58 CDT)
- John Stone (Mon Apr 05 2004 - 14:11:45 CDT)
- Dr. Daniel James White PhD (Mon Apr 05 2004 - 10:35:06 CDT)
how to mark regions in Multiseq
- Kirby Vandivort (Tue Mar 29 2011 - 10:13:48 CDT)
- Irene Newhouse (Mon Mar 28 2011 - 19:35:31 CDT)
How to maximize the VMD display window
- Yingzhe Liu (Fri Mar 25 2011 - 07:08:06 CDT)
- John Stone (Thu Mar 24 2011 - 21:58:27 CDT)
- Yingzhe Liu (Tue Mar 22 2011 - 02:10:48 CDT)
How to measure cross angles between helices
- Matthew C. Lee (Fri Sep 05 2003 - 13:57:42 CDT)
How to measure of radius of molecules?
- Taeho Kim (Mon Apr 10 2006 - 03:29:18 CDT)
How to Measure Radius of gyration
- David Wedner (Wed Nov 17 2010 - 18:40:22 CST)
- John Stone (Tue Nov 16 2010 - 23:33:36 CST)
- David Wedner (Tue Nov 16 2010 - 13:24:05 CST)
how to measure residues' chi angle in VMD?
- Albert (Thu Feb 02 2012 - 03:34:27 CST)
how to measure some constants
- Axel Kohlmeyer (Tue Dec 14 2010 - 04:13:41 CST)
- matziast_at_med.uth.gr (Tue Dec 14 2010 - 03:26:17 CST)
how to measure the distance between centroids
- John Stone (Mon Dec 19 2005 - 16:51:29 CST)
- Michel Espinoza-Fonseca (Fri Dec 16 2005 - 13:37:07 CST)
how to merge two PDB trajectories?
- John Stone (Wed Feb 01 2012 - 23:40:45 CST)
- Albert (Wed Feb 01 2012 - 23:34:31 CST)
HOW TO PARAMETRIZE A LIGAND
- Diego Enry (Thu Apr 28 2011 - 10:20:02 CDT)
- Markus K. Dahlgren (Thu Apr 28 2011 - 08:24:52 CDT)
- shome sankar bhunia (Thu Apr 28 2011 - 04:53:12 CDT)
How to parse very large trajectories?
- Bogdan Costescu (Thu Nov 10 2011 - 08:20:41 CST)
- Axel Kohlmeyer (Wed Nov 09 2011 - 15:44:30 CST)
- Aleksandr Kivenson (Wed Nov 09 2011 - 14:41:55 CST)
how to pick certain water molecular from a .mdcrd
- Joseph Bylund (Tue Apr 13 2010 - 05:30:48 CDT)
- ÅÓÑ©ÇÛ Pang Xueqin (Tue Apr 13 2010 - 01:37:16 CDT)
How to pick up the lost periodic information?
- Guo Zhi (Tue May 09 2006 - 22:28:42 CDT)
- John Stone (Tue May 09 2006 - 09:21:31 CDT)
- John Stone (Tue May 09 2006 - 09:16:59 CDT)
- Marc Q. Ma (Tue May 09 2006 - 08:21:44 CDT)
- Guo Zhi (Mon May 08 2006 - 20:57:20 CDT)
- John Stone (Mon May 08 2006 - 15:40:30 CDT)
- Marc Q. Ma (Mon May 08 2006 - 14:05:31 CDT)
- Guo Zhi (Sun May 07 2006 - 10:32:16 CDT)
how to place a membrane protein with OPM ?
- Chris Harrison (Thu Mar 01 2012 - 00:13:58 CST)
- Albert (Wed Feb 29 2012 - 23:54:00 CST)
- Albert (Wed Feb 29 2012 - 23:54:35 CST)
- Chris Harrison (Wed Feb 29 2012 - 21:35:28 CST)
- Chris Harrison (Wed Feb 29 2012 - 21:36:32 CST)
- Andrew Jewett (Wed Feb 29 2012 - 19:24:10 CST)
- Albert (Wed Feb 29 2012 - 15:33:44 CST)
how to place polymers on carbon nanotube surface
- niaz poorgholami (Fri Nov 11 2011 - 13:21:24 CST)
- Axel Kohlmeyer (Fri Nov 11 2011 - 13:27:35 CST)
- John Stone (Fri Nov 11 2011 - 12:51:11 CST)
- niaz poorgholami (Fri Nov 11 2011 - 12:31:47 CST)
How to plot the data created by VMD analysis script - difference_matrix?
- Sanjeev B.S. (Mon Apr 22 2002 - 21:34:51 CDT)
- John Stone (Mon Apr 22 2002 - 14:48:19 CDT)
- Joe Huang (Thu Apr 18 2002 - 14:22:40 CDT)
how to plot waters h-bonded to a protein?
- Eduard Schreiner (Thu Apr 06 2006 - 12:09:19 CDT)
- John Stone (Thu Apr 06 2006 - 09:42:00 CDT)
- J. Juraszek (Thu Apr 06 2006 - 08:57:08 CDT)
how to prevent molecule jump around
- John Stone (Thu Jul 06 2006 - 13:19:08 CDT)
- Dongsheng Zhang (Wed Jul 05 2006 - 00:35:41 CDT)
how to prevent view reset on data load
- Ondrej Marsalek (Sun Nov 30 2008 - 15:58:56 CST)
- Axel Kohlmeyer (Sun Nov 30 2008 - 05:46:45 CST)
- Ondrej Marsalek (Sat Nov 29 2008 - 10:52:45 CST)
How to produce a graph as the one attached, using VMD?
- Jian Zou (Mon Sep 11 2006 - 00:15:55 CDT)
- Jiapu.Zhang_at_csiro.au (Sun Sep 10 2006 - 23:49:37 CDT)
- Jian Zou (Sun Sep 10 2006 - 22:55:52 CDT)
- Jiapu.Zhang_at_csiro.au (Sun Sep 10 2006 - 21:32:20 CDT)
How to put metal ion into my protein
- Shulin Zhuang (Wed Oct 03 2007 - 22:29:40 CDT)
how to put two identical proteins in a same water sphere?
- juan jesus sanchez sanchez (Mon Aug 22 2011 - 13:06:12 CDT)
How to read i8(64 bit) .crd file with 32 bit VMD
- John Stone (Sun May 23 2004 - 15:40:35 CDT)
- EPF (Esben Peter Friis) (Sun May 23 2004 - 15:31:55 CDT)
- John Stone (Sat May 22 2004 - 19:45:39 CDT)
- ILJA Khavrutskii (Sat May 22 2004 - 12:07:23 CDT)
How to read i8(64 bit) .dcd file with 32 bit VMD
- Bogdan Costescu (Mon May 24 2004 - 03:24:33 CDT)
How to read i8(64 bit) trajectory (.dcd) file with 32 bit VMD
- Bogdan Costescu (Mon May 24 2004 - 03:32:12 CDT)
- ILJA Khavrutskii (Sun May 23 2004 - 18:51:25 CDT)
how to read in a multi-segment psf/pdb pair into vmd
- Himanshu Khandelia (Wed Jan 17 2007 - 05:49:13 CST)
How to read out .vel file from charmm
- xzp02_at_mails.tsinghua.edu.cn (Fri Jul 16 2004 - 00:00:18 CDT)
How to read pdbqt file?
- Balazs Jojart (Sun Sep 04 2011 - 01:41:08 CDT)
- Axel Kohlmeyer (Sat Sep 03 2011 - 15:53:58 CDT)
- Chirag Vora (Sat Sep 03 2011 - 14:57:01 CDT)
How to read specific DCD frames directly in Fortran?
- Yinglong Miao (Sun Apr 06 2008 - 10:51:40 CDT)
- Leandro Martínez (Sun Apr 06 2008 - 02:25:45 CDT)
- Axel Kohlmeyer (Sat Apr 05 2008 - 18:08:23 CDT)
- Yinglong Miao (Sat Apr 05 2008 - 13:21:53 CDT)
- John Stone (Sat Apr 05 2008 - 13:43:21 CDT)
- Peter Freddolino (Sat Apr 05 2008 - 13:38:39 CDT)
How to reduce memory usage of a script?
- David Poger (Tue Aug 05 2008 - 02:18:05 CDT)
- John Stone (Tue Aug 05 2008 - 00:36:59 CDT)
- David Poger (Tue Aug 05 2008 - 00:24:10 CDT)
- John Stone (Mon Aug 04 2008 - 21:44:48 CDT)
- David Poger (Mon Aug 04 2008 - 20:31:10 CDT)
How to remove "Lable"
- Chang, Christopher (Thu Apr 07 2005 - 17:39:55 CDT)
- Huaer XC (Thu Apr 07 2005 - 14:46:38 CDT)
how to remove chain id ?
- Sanghyun Park (Sat Oct 20 2007 - 14:39:03 CDT)
- Axel Kohlmeyer (Sat Oct 20 2007 - 14:00:02 CDT)
- Sanghyun Park (Sat Oct 20 2007 - 11:42:45 CDT)
- Axel Kohlmeyer (Sat Oct 20 2007 - 08:33:05 CDT)
- Sanghyun Park (Fri Oct 19 2007 - 21:57:10 CDT)
How to remove hydrogens from a pdb file?
- Bjoern Olausson (Fri May 07 2010 - 02:41:51 CDT)
- Ajasja LjubetiÄ (Fri May 07 2010 - 02:45:30 CDT)
- Francesca Ricci-Tam (Thu May 06 2010 - 23:17:19 CDT)
how to rename a representation in vmd
- Ajasja LjubetiÄ (Wed Aug 17 2011 - 05:11:31 CDT)
- maria goranovic (Wed Aug 17 2011 - 04:18:42 CDT)
How to render an image like this one with VMD?
- Anton Arkhipov (Thu Sep 25 2008 - 11:29:20 CDT)
- Peter Freddolino (Wed Sep 24 2008 - 21:49:25 CDT)
- Dong Xu (Wed Sep 24 2008 - 20:58:12 CDT)
how to render higher resolution figures for publication?
- Lixia Jin Day (Fri Apr 25 2008 - 17:09:34 CDT)
- John Stone (Fri Apr 25 2008 - 16:07:06 CDT)
- Lixia Jin Day (Fri Apr 25 2008 - 14:18:24 CDT)
- John Stone (Fri Apr 04 2008 - 17:59:52 CDT)
- Lixia Jin Day (Fri Apr 04 2008 - 17:42:08 CDT)
- John Stone (Fri Apr 04 2008 - 16:36:05 CDT)
- Lixia Jin Day (Fri Apr 04 2008 - 16:27:04 CDT)
how to represent H-bonds between chain A and chain B using VMD
- Justin Gullingsrud (Wed Jan 05 2005 - 10:29:51 CST)
- Axel Kohlmeyer (Wed Jan 05 2005 - 02:29:52 CST)
- Uday Chippada (Tue Jan 04 2005 - 17:02:42 CST)
how to reset a timed out connection
- John Stone (Tue Apr 24 2007 - 14:57:41 CDT)
- Amarda Shehu (Tue Apr 24 2007 - 13:55:24 CDT)
- John Stone (Tue Apr 24 2007 - 13:44:13 CDT)
- John Stone (Tue Apr 24 2007 - 11:27:22 CDT)
- Amarda Shehu (Tue Apr 24 2007 - 09:23:44 CDT)
How to rotate a molecule
- spitaleri.andrea_at_hsr.it (Sun Oct 30 2005 - 03:12:04 CST)
- Yang Zhenyu (Sat Oct 29 2005 - 23:32:01 CDT)
how to run a plugin from the command line?
- John Stone (Mon Sep 11 2006 - 23:34:01 CDT)
- Johannes Müllegger (Mon Sep 11 2006 - 18:25:03 CDT)
how to run catdcd from within a proc
- Axel Kohlmeyer (Mon Nov 17 2008 - 12:48:52 CST)
- BIN ZHANG (Mon Nov 17 2008 - 11:25:32 CST)
- Thomas Evangelidis (Mon Nov 17 2008 - 10:42:44 CST)
how to run membrane.tcl from user-defined location ?
- John Stone (Thu Jan 25 2007 - 02:01:12 CST)
- Himanshu Khandelia (Wed Jan 24 2007 - 05:54:51 CST)
how to run VMD on IBM machines
- John Stone (Wed Jul 25 2007 - 13:02:32 CDT)
- Axel Kohlmeyer (Wed Jul 25 2007 - 11:04:02 CDT)
- Rachel (Wed Jul 25 2007 - 11:11:34 CDT)
how to save a list in a file
- John Stone (Tue Jul 17 2007 - 12:07:55 CDT)
- sally cii (Tue Jul 17 2007 - 11:58:39 CDT)
- Nuno Loureiro Ferreira (Tue Jul 17 2007 - 12:12:56 CDT)
- Nuno Loureiro Ferreira (Tue Jul 17 2007 - 10:18:04 CDT)
- John Stone (Tue Jul 17 2007 - 11:08:19 CDT)
- Nuno Loureiro Ferreira (Tue Jul 17 2007 - 10:31:00 CDT)
- sally cii (Tue Jul 17 2007 - 09:09:45 CDT)
- Nuno Loureiro Ferreira (Tue Jul 17 2007 - 02:57:40 CDT)
- sally cii (Mon Jul 16 2007 - 07:12:14 CDT)
- Nuno Loureiro Ferreira (Sat Jul 14 2007 - 11:49:29 CDT)
- Axel Kohlmeyer (Fri Jul 13 2007 - 13:04:16 CDT)
- sally cii (Fri Jul 13 2007 - 12:02:02 CDT)
how to save a structure after alignment?
- John Stone (Tue May 30 2006 - 17:32:24 CDT)
- Guo Zhi (Sun May 28 2006 - 04:33:44 CDT)
How to save Automatic psf builder script
- Axel Kohlmeyer (Thu Nov 24 2011 - 14:45:59 CST)
- flavio seixas (Thu Nov 24 2011 - 12:03:15 CST)
how to save coordinates after moving molecule in VMD?
- John Stone (Thu Apr 01 2004 - 11:08:11 CST)
- John Stone (Thu Apr 01 2004 - 10:40:51 CST)
- Gadi Oron (Thu Apr 01 2004 - 07:48:21 CST)
- li (Wed Mar 31 2004 - 21:42:44 CST)
How to save image in SVG format?
- Axel Kohlmeyer (Tue Jul 26 2011 - 01:36:14 CDT)
- ºÎØ¹»Ô (Tue Jul 26 2011 - 00:48:28 CDT)
How to save the snapshot of my protein?
- Marcos Sotomayor (Fri Feb 09 2007 - 12:24:49 CST)
- John Stone (Fri Feb 09 2007 - 10:40:29 CST)
- Kateryna Miroshnychenko (Fri Feb 09 2007 - 09:21:23 CST)
- Peter Freddolino (Fri Feb 09 2007 - 07:37:56 CST)
- bertrand russell (Fri Feb 09 2007 - 03:58:53 CST)
- John Stone (Fri Feb 09 2007 - 02:59:19 CST)
- bertrand russell (Fri Feb 09 2007 - 01:24:54 CST)
How to save trajectory using Tcl commands?
- Tim Isgro (Thu Apr 15 2004 - 17:54:15 CDT)
- Justin Gullingsrud (Thu Apr 15 2004 - 14:05:59 CDT)
- Tim Isgro (Wed Apr 14 2004 - 22:49:55 CDT)
- Chen Yongzhi (Wed Apr 14 2004 - 19:28:11 CDT)
How to see the original Origin (0,0,0, coordinate) of a system
- John Stone (Thu Mar 27 2008 - 16:51:44 CDT)
- Adrian Kaats (Thu Mar 27 2008 - 15:56:52 CDT)
- Axel Kohlmeyer (Thu Mar 27 2008 - 11:57:58 CDT)
- Utpal Sarkar (Thu Mar 27 2008 - 11:20:03 CDT)
How to select a hetatom while get rid of N-term ACE in atomselect
- John Stone (Thu Sep 10 2009 - 10:56:08 CDT)
- Sujata Sovani (Tue Sep 08 2009 - 17:47:43 CDT)
how to select atoms according to b-factor
- Peter Freddolino (Mon Jul 23 2007 - 09:17:30 CDT)
- Rachel (Mon Jul 23 2007 - 07:37:05 CDT)
How to select some sugar atoms
- Jean Richelle (Thu Apr 20 2006 - 11:37:28 CDT)
How to select the interacting atoms between two molecules in two different pdb files
- John Stone (Tue Sep 24 2002 - 15:30:25 CDT)
- Tran Trung Tran (Mon Sep 23 2002 - 19:23:46 CDT)
how to select the problematic residues(atoms)
- Jacob Poehlsgaard (Thu Oct 26 2006 - 07:00:55 CDT)
- Rachel (Thu Oct 26 2006 - 05:53:14 CDT)
How to select water molecules within certain distance from a protein
- John Stone (Fri Aug 27 2004 - 15:27:01 CDT)
- Sekwan Oh (Tue Aug 24 2004 - 03:44:57 CDT)
How to select water near a certain residue if it is outside of the water box?
- Axel Kohlmeyer (Sat May 13 2006 - 18:11:27 CDT)
- TZU-LAN YEH (Sat May 13 2006 - 11:04:20 CDT)
- Mgr. Lubos Vrbka (Wed May 10 2006 - 05:52:32 CDT)
- Eduard Schreiner (Wed May 10 2006 - 04:22:34 CDT)
- TZU-LAN YEH (Wed May 10 2006 - 00:11:26 CDT)
How to select whole residues when at least one atom is within a specific distance
- Michael LeVine (Thu Oct 13 2011 - 16:57:26 CDT)
- Axel Kohlmeyer (Thu Oct 13 2011 - 14:37:24 CDT)
- John Stone (Thu Oct 13 2011 - 14:32:26 CDT)
- Michael LeVine (Thu Oct 13 2011 - 12:48:43 CDT)
how to set atom index
- Guo Zhi (Thu Mar 15 2007 - 19:51:04 CDT)
- John Stone (Thu Mar 15 2007 - 13:20:12 CDT)
- Guo Zhi (Wed Mar 14 2007 - 10:33:57 CDT)
how to set color parameters differently for different molecules
- Axel Kohlmeyer (Thu Jan 29 2009 - 20:35:35 CST)
- Thomas Evangelidis (Thu Jan 29 2009 - 19:08:08 CST)
- MQO. Carlos Javier NÃºÃ±ez Aguero (Thu Jan 29 2009 - 19:03:40 CST)
- John Stone (Thu Jan 29 2009 - 15:41:18 CST)
- Thomas Evangelidis (Thu Jan 29 2009 - 15:34:31 CST)
- Axel Kohlmeyer (Sun Jan 25 2009 - 13:18:10 CST)
- Thomas Evangelidis (Sun Jan 25 2009 - 12:09:10 CST)
how to set molinfo from python
- Axel Kohlmeyer (Tue Feb 19 2008 - 10:49:17 CST)
- Jorgen Simonsen (Tue Feb 19 2008 - 02:03:16 CST)
how to set PBC for ILS
- Irene Newhouse (Wed Feb 10 2010 - 16:53:43 CST)
- John Stone (Wed Feb 10 2010 - 16:59:29 CST)
- John Stone (Wed Feb 10 2010 - 16:43:43 CST)
- Irene Newhouse (Wed Feb 10 2010 - 17:01:24 CST)
- Irene Newhouse (Wed Feb 10 2010 - 16:35:17 CST)
How to set the default mol style as VDW?
- Ajasja LjubetiÄ (Fri Sep 03 2010 - 06:36:08 CDT)
- Eric Grzelak (Wed Sep 01 2010 - 15:07:49 CDT)
How to set the default properties of drawing methods?
- no tengo nombre (Thu Nov 13 2008 - 11:55:11 CST)
- Heikki Kasnanen (Thu Nov 13 2008 - 08:39:43 CST)
- John Stone (Thu Nov 13 2008 - 08:45:40 CST)
How to set VMD_Plugin_path?
- John Stone (Mon Apr 02 2012 - 10:58:28 CDT)
- a a (Sat Mar 31 2012 - 23:25:30 CDT)
How to show 3D images in the display window of VMD
- John Stone (Fri Jun 02 2006 - 12:27:14 CDT)
- ikek70 (Fri Jun 02 2006 - 11:15:20 CDT)
how to show biological unit coordiates from PDB using VMD?
- Margaret S. Cheung (Sun Sep 17 2006 - 09:22:53 CDT)
- John Stone (Sun Sep 17 2006 - 03:20:39 CDT)
- Margaret Shun Cheung (Sat Sep 16 2006 - 11:06:13 CDT)
- Margaret Shun Cheung (Tue Apr 04 2006 - 16:04:00 CDT)
- John Stone (Fri Mar 31 2006 - 16:27:21 CST)
- Margaret Shun Cheung (Fri Mar 31 2006 - 16:19:20 CST)
- John Stone (Fri Mar 31 2006 - 16:15:14 CST)
- John Stone (Fri Mar 31 2006 - 15:52:08 CST)
- Margaret Shun Cheung (Fri Mar 31 2006 - 14:33:51 CST)
How to show dynamic bonds?
- Axel Kohlmeyer (Thu Jan 06 2011 - 08:27:52 CST)
- Jervis Chu (Thu Jan 06 2011 - 01:06:18 CST)
- Axel Kohlmeyer (Tue Jan 04 2011 - 09:28:39 CST)
- Jervis Chu (Tue Jan 04 2011 - 01:58:39 CST)
How to show the strain energies of each atom
- John Stone (Thu Sep 26 2002 - 16:38:08 CDT)
- #WONG CHEE HOW# (Thu Sep 19 2002 - 02:36:27 CDT)
how to solvate a molecule with cubic periodic boundary box?
- Leonardo Trabuco (Mon Apr 16 2007 - 16:56:15 CDT)
- Margaret S. Cheung (Mon Apr 16 2007 - 15:46:48 CDT)
How to solvate a protein in a large water sphere
- Peter Freddolino (Fri Aug 31 2007 - 08:16:08 CDT)
- Shulin Zhuang (Fri Aug 31 2007 - 03:44:50 CDT)
How to Solvate protiens in any other solvent
- John Stone (Wed Aug 04 2004 - 17:11:26 CDT)
- Shahid Qamar (Tue Aug 03 2004 - 17:19:53 CDT)
How to specify color based on dihedral angle?
- Axel Kohlmeyer (Mon Oct 13 2008 - 14:25:11 CDT)
- Suman Chakrabarty (Mon Oct 13 2008 - 13:09:53 CDT)
How to specify processors for running VMD on a cluster?
- Axel Kohlmeyer (Tue Feb 10 2009 - 15:35:46 CST)
- Axel Kohlmeyer (Tue Feb 10 2009 - 12:24:58 CST)
- Yinglong Miao (Tue Feb 10 2009 - 10:45:27 CST)
How to specify the orientation of the molecule
- zhangh1_at_umbc.edu (Tue Mar 13 2007 - 10:23:37 CDT)
- John Stone (Mon Mar 12 2007 - 20:44:34 CDT)
- zhangh1_at_umbc.edu (Sun Mar 11 2007 - 19:39:45 CDT)
how to start vmd with "menu tkcon on"?
- John Stone (Tue Sep 06 2005 - 09:58:37 CDT)
- Jian Zou (Tue Sep 06 2005 - 09:55:50 CDT)
- John Stone (Tue Sep 06 2005 - 09:36:23 CDT)
- Jan Saam (Tue Sep 06 2005 - 03:05:36 CDT)
- Jian Zou (Tue Sep 06 2005 - 02:37:37 CDT)
How to stop a script (eg : source myscript.tcl) ?
- TRINH Minh Hieu (Tue Oct 12 2010 - 02:20:19 CDT)
- Axel Kohlmeyer (Mon Oct 11 2010 - 09:23:14 CDT)
- TRINH Minh Hieu (Mon Oct 11 2010 - 07:34:31 CDT)
how to study the effect of mutation in vmd
- sankari thirumal (Sun May 29 2005 - 23:15:33 CDT)
How to superimpose trajectories
- John Stone (Thu Mar 22 2007 - 10:46:08 CDT)
- Kailee (Thu Mar 22 2007 - 10:04:44 CDT)
- John Stone (Wed Mar 21 2007 - 15:33:56 CDT)
- John Stone (Wed Mar 21 2007 - 15:26:20 CDT)
- Kailee (Wed Mar 21 2007 - 09:14:33 CDT)
how to transform the coordinate of the atom using vmd
- John Stone (Fri Dec 07 2007 - 15:02:21 CST)
- Shulin Zhuang (Fri Dec 07 2007 - 14:01:51 CST)
How to translate my diffused protein back to COM?
- Axel Kohlmeyer (Mon Oct 05 2009 - 20:31:13 CDT)
- A D (Mon Oct 05 2009 - 18:20:15 CDT)
How to understand the occupancy?
- Dong Luo (Fri Nov 04 2011 - 14:42:09 CDT)
- lina (Thu Nov 03 2011 - 09:06:06 CDT)
how to update the selection in NAMDEnergy
- Peter Freddolino (Tue Feb 08 2011 - 23:35:00 CST)
- juan roman (Tue Feb 08 2011 - 20:02:15 CST)
How to use " segment " in tcl script.
- Axel Kohlmeyer (Wed Mar 11 2009 - 10:15:05 CDT)
- accomp lin (Wed Mar 11 2009 - 01:31:13 CDT)
how to use 'lreplace' of 2D array?
- Myunggi Yi (Mon Jan 08 2007 - 11:58:26 CST)
how to use APBS
- John Stone (Mon Jan 09 2006 - 16:38:24 CST)
- John Stone (Thu Dec 22 2005 - 16:49:37 CST)
- Michel Espinoza-Fonseca (Wed Dec 21 2005 - 12:32:36 CST)
- lily jin (Wed Dec 21 2005 - 12:14:47 CST)
How to use bigdcd in vmd batch mode?
- John Stone (Fri Sep 08 2006 - 16:32:18 CDT)
- Axel Kohlmeyer (Fri Sep 08 2006 - 12:04:35 CDT)
- Hamsa Priya Mohana sundaram (Fri Sep 08 2006 - 09:44:45 CDT)
How to use Inorganic Builder
- Robert Brunner (Fri Sep 12 2008 - 10:19:45 CDT)
- Nd S (Fri Sep 12 2008 - 03:19:12 CDT)
how to use measure hbonds to calculate occupancy of all hbonds in simulation?
- lnubiofox (Tue May 15 2007 - 09:21:33 CDT)
How to use remote GLSL rendering capabilities?
- John Stone (Mon May 28 2007 - 15:32:26 CDT)
- John Stone (Mon May 28 2007 - 15:24:36 CDT)
- Axel Kohlmeyer (Mon May 28 2007 - 10:51:07 CDT)
- Peter Freddolino (Sun May 27 2007 - 18:10:48 CDT)
- Cesar Luis Avila (Sun May 27 2007 - 16:05:03 CDT)
- Axel Kohlmeyer (Thu May 24 2007 - 17:38:36 CDT)
- Cesar Luis Avila (Thu May 24 2007 - 18:02:43 CDT)
How to use solvate add water in amber crd/parm files?
- John Stone (Fri Dec 10 2004 - 02:22:22 CST)
- Îº¿ (Thu Dec 09 2004 - 20:34:12 CST)
how to use the AutoIMD "Tool control" panel.
- Thomas C. Bishop (Mon Apr 30 2012 - 13:52:14 CDT)
- Axel Kohlmeyer (Mon Apr 30 2012 - 12:34:07 CDT)
- Christopher Neale (Mon Apr 30 2012 - 11:28:19 CDT)
How to use vector calculation ???
- Axel Kohlmeyer (Fri Oct 20 2006 - 10:45:11 CDT)
- Myunggi Yi (Thu Oct 19 2006 - 22:30:48 CDT)
How to use VMD script "PorcupinePlot.tcl"
- Axel Kohlmeyer (Mon Jan 31 2011 - 11:59:50 CST)
- B.M.B. Vanschouwen (Mon Jan 31 2011 - 10:46:55 CST)
how to view the dynamics in power point presentation
- John Stone (Thu Mar 29 2007 - 11:43:52 CDT)
- gadde suneetha (Thu Mar 29 2007 - 06:25:29 CDT)
how to visualize Charmm generated files
- Alessandro Cembran (Wed Jun 06 2007 - 18:15:41 CDT)
- ThuZar Lwin (Wed Jun 06 2007 - 16:38:54 CDT)
How to visualize iron and chlorine properly.
- Ignacio Fernández Galván (Tue Jun 24 2008 - 03:25:40 CDT)
- Axel Kohlmeyer (Mon Jun 23 2008 - 10:13:41 CDT)
- wangyong_at_dicp.ac.cn (Mon Jun 23 2008 - 19:44:35 CDT)
How to visualize only parts of a molecular surface
- John Stone (Wed Oct 08 2008 - 13:51:19 CDT)
- schwarz (Wed Oct 08 2008 - 08:11:47 CDT)
How to visualize phi maps calculated with delphi V. 4
- John Stone (Mon Apr 23 2007 - 14:55:59 CDT)
- Cesar Avila (Sat Apr 21 2007 - 20:05:42 CDT)
- John Stone (Fri Apr 20 2007 - 21:07:01 CDT)
- Cesar Luis Avila (Fri Apr 20 2007 - 18:36:48 CDT)
how to wrap a protein with periodic waters
- Olaf Lenz (Mon Aug 15 2011 - 02:43:51 CDT)
- Thomas Evangelidis (Fri Aug 12 2011 - 10:19:47 CDT)
how to wrap trajectory into truncated octahedral box
- David A. Case (Mon Jul 30 2007 - 11:30:15 CDT)
- Axel Kohlmeyer (Thu Jul 26 2007 - 11:50:43 CDT)
- Olaf Lenz (Thu Jul 26 2007 - 09:20:03 CDT)
- sally cii (Thu Jul 26 2007 - 07:03:51 CDT)
- Olaf Lenz (Wed Jul 25 2007 - 12:39:39 CDT)
- Rachel (Wed Jul 25 2007 - 10:51:54 CDT)
how to write out the coordinates of center of mass of a particular residue
- Xiongce Zhao (Wed Jun 01 2005 - 12:36:45 CDT)
how to write out the coordinates of center of mass of a particularresidue
- Ekta Khurana (Thu Jun 02 2005 - 10:12:00 CDT)
- Blake Charlebois (Wed Jun 01 2005 - 21:39:49 CDT)
how to write out the dcd file by vmd python command?
- Axel Kohlmeyer (Tue Feb 22 2011 - 07:19:28 CST)
- mjyang (Mon Feb 21 2011 - 22:40:48 CST)
- mjyang (Mon Feb 21 2011 - 22:09:17 CST)
HOW TO: visualization of electron density maps
- Dallas Warren (Mon Jan 24 2005 - 15:34:41 CST)
- John Stone (Mon Jan 24 2005 - 14:31:33 CST)
- Dieter Blaas (Mon Jan 24 2005 - 04:28:00 CST)
how vmd calculate dihedral angle
- John Stone (Fri Mar 15 2002 - 10:18:23 CST)
- Yufang Wang (Fri Mar 15 2002 - 00:07:15 CST)
howto select stain reveal map
- Axel Kohlmeyer (Thu Mar 26 2009 - 06:41:07 CDT)
- Francesco Pietra (Thu Mar 26 2009 - 02:30:29 CDT)
HRTEM
- John Stone (Fri Aug 07 2009 - 12:22:53 CDT)
- Joshua D. Moore (Fri Aug 07 2009 - 02:20:45 CDT)
Hybond calulator and display
- Jerry Ebalunode (Fri Jan 16 2004 - 12:24:30 CST)
- John Stone (Fri Jan 16 2004 - 13:07:09 CST)
Hydration
- John Stone (Wed May 18 2005 - 13:36:52 CDT)
- Cetin Baloglu (Wed May 18 2005 - 03:44:34 CDT)
Hydration dynamics:Phrase selection problem in vmd
- Axel Kohlmeyer (Mon Jul 18 2011 - 09:40:28 CDT)
- Kartheek (Mon Jul 18 2011 - 07:09:02 CDT)
hydration shell volume
- divya nayar (Thu Jun 23 2011 - 01:43:55 CDT)
Hydrogen and Water Molecules.
- Yu Liu (Wed Jun 27 2007 - 11:13:40 CDT)
Hydrogen bond angle
- hirdesh kumar (Fri Aug 27 2010 - 23:25:21 CDT)
- Axel Kohlmeyer (Fri Aug 27 2010 - 09:41:22 CDT)
- hirdesh kumar (Fri Aug 27 2010 - 08:19:29 CDT)
hydrogen bond energy
- John Stone (Tue Jun 28 2005 - 11:09:04 CDT)
- shgnwgn_at_eden.rutgers.edu (Tue Jun 28 2005 - 10:50:25 CDT)
- Axel Kohlmeyer (Thu Feb 26 2004 - 03:46:52 CST)
- Sichun Yang (Wed Feb 25 2004 - 12:31:45 CST)
Hydrogen bond energy calculation
- Aditya Padhi (Wed May 23 2012 - 22:56:10 CDT)
Hydrogen bond representation and cut off distance
- John Stone (Fri Sep 24 2004 - 10:51:02 CDT)
- Uday Chippada (Thu Sep 23 2004 - 13:53:51 CDT)
hydrogen bonding
- Justin Gullingsrud (Wed Oct 30 2002 - 10:54:13 CST)
- John Stone (Wed Oct 30 2002 - 10:37:02 CST)
- Y. U. Sasidhar (Mon Oct 28 2002 - 21:52:48 CST)
Hydrogen Bonding energy
- Goutham (Thu Jul 23 2009 - 20:56:52 CDT)
Hydrogen bonds
- Knut Jørgen Bjuland (Wed Sep 22 2010 - 11:19:53 CDT)
- ban arn (Tue Sep 21 2010 - 11:17:10 CDT)
- politr_at_huji.ac.il (Fri May 30 2008 - 06:05:12 CDT)
Hydrogen bonds plugin obscures charged atoms -- help!
- Hurt, Darrell (NIH/NIAID) [E] (Thu Apr 08 2010 - 15:32:18 CDT)
- Hurt, Darrell (NIH/NIAID) [E] (Thu Apr 08 2010 - 11:48:39 CDT)
hydrogen bonds tcl script
- Axel Kohlmeyer (Tue Apr 28 2009 - 10:17:26 CDT)
- politr_at_huji.ac.il (Tue Apr 28 2009 - 09:40:12 CDT)
Hydrogen bonds with different evaluations
- Florentina Tofoleanu (Thu Nov 26 2009 - 05:16:34 CST)
Hydrogens in vmd
- snoze pa (Thu Jan 03 2008 - 16:19:05 CST)
- snoze pa (Thu Jan 03 2008 - 16:15:55 CST)
- Peter Freddolino (Thu Jan 03 2008 - 16:21:53 CST)
- snoze pa (Thu Jan 03 2008 - 15:53:31 CST)
- snoze pa (Thu Jan 03 2008 - 15:30:40 CST)
- Peter Freddolino (Thu Jan 03 2008 - 15:38:31 CST)
- L. Michel Espinoza-Fonseca (Thu Jan 03 2008 - 15:17:54 CST)
- John Stone (Thu Jan 03 2008 - 14:26:16 CST)
- snoze pa (Thu Jan 03 2008 - 14:08:31 CST)
- Peter Freddolino (Thu Jan 03 2008 - 14:25:05 CST)
hydrophobic accessible surface area
- Jorgen Simonsen (Tue Aug 24 2010 - 13:55:20 CDT)
Hydrophobic interaction
- Nicholas Musolino (Fri Jun 18 2010 - 08:40:44 CDT)
- Nicolas Sapay (Fri Jun 18 2010 - 08:25:09 CDT)
- ban arn (Fri Jun 18 2010 - 08:18:23 CDT)
- Axel Kohlmeyer (Fri Jun 18 2010 - 08:10:23 CDT)
- Axel Kohlmeyer (Fri Jun 18 2010 - 08:25:36 CDT)
- ban arn (Fri Jun 18 2010 - 07:30:45 CDT)
- ban arn (Fri Jun 18 2010 - 06:53:37 CDT)
- ban arn (Fri Jun 18 2010 - 05:59:43 CDT)
Hydrophobic mismatch script
- kanchi subbarao rao (Mon Apr 23 2012 - 06:11:24 CDT)
- Ban Arn (Mon Apr 23 2012 - 05:29:34 CDT)
- francesco oteri (Mon Apr 23 2012 - 05:17:13 CDT)
- Ban Arn (Mon Apr 23 2012 - 04:08:28 CDT)
hydrophobic surface area calculation
- John Stone (Mon Mar 08 2004 - 17:38:54 CST)
- Markus Laub (Mon Mar 08 2004 - 05:01:59 CST)
Hydrophobicity
- Justin Gullingsrud (Sun Oct 06 2002 - 13:37:35 CDT)
- Markus Laub (Sat Oct 05 2002 - 17:42:20 CDT)
hydrophobicity on the Connolly surface
- John Stone (Thu Jan 02 2003 - 10:33:33 CST)
- Denys Bashtovyy (Thu Jan 02 2003 - 07:04:10 CST)
Hydrophobicity plots in VMD
- John Stone (Tue Nov 27 2007 - 16:27:58 CST)
- Avell Diroll (Tue Nov 27 2007 - 03:22:21 CST)
- aneesh cna (Mon Nov 26 2007 - 23:31:43 CST)
- John Stone (Mon Nov 26 2007 - 11:16:08 CST)
- aneesh cna (Mon Nov 26 2007 - 04:09:44 CST)
- Axel Kohlmeyer (Sun Nov 25 2007 - 12:49:29 CST)
- aneesh cna (Sat Nov 24 2007 - 22:50:51 CST)
- Peter Freddolino (Sat Nov 24 2007 - 08:36:20 CST)
- aneesh cna (Sat Nov 24 2007 - 00:33:38 CST)
Hydrophobicity Scale
- Ramya Gamini (Thu Mar 05 2009 - 20:36:34 CST)
- Ramya Gamini (Thu Mar 05 2009 - 20:20:42 CST)
- Goutham (Thu Mar 05 2009 - 19:36:46 CST)
- John Stone (Thu Mar 05 2009 - 19:17:49 CST)
- Goutham (Thu Mar 05 2009 - 18:58:41 CST)
hyperchem files
- Laurence F. Wood (Thu May 10 2001 - 14:11:24 CDT)
- Mauricio Carrillo Tripp (Thu May 10 2001 - 10:22:44 CDT)
I am sorry
- Tauna Rignall (Wed Nov 12 2003 - 11:25:31 CST)
I can not load mdcrd file after simulation with sander
- John Stone (Wed Jul 07 2004 - 14:16:33 CDT)
- Valodymyr Nechyporuk-Zloy (Tue Jul 06 2004 - 15:44:57 CDT)
I can't not see my post in Archive list
- John Stone (Sat Sep 17 2011 - 23:42:43 CDT)
- hongphuc nguyen (Sat Sep 17 2011 - 22:52:58 CDT)
I have working PETE xbgf file, now how to combine into membrane?
- Peter Freddolino (Wed Dec 27 2006 - 13:21:27 CST)
- wolfinbm_at_uci.edu (Wed Dec 27 2006 - 11:34:11 CST)
I need a bid trajectory please!!!
- Thomas Evangelidis (Fri Dec 26 2008 - 16:01:33 CST)
- Axel Kohlmeyer (Fri Dec 26 2008 - 14:20:38 CST)
- Thomas Evangelidis (Thu Dec 25 2008 - 16:54:44 CST)
I'm back..
- John Stone (Tue Jul 08 2008 - 16:24:12 CDT)
I'm sorry ... please ignore the junk !!
- Vlad Cojocaru (Mon Apr 09 2007 - 05:50:54 CDT)
I've tried latest vmd but still problems with mdcrd/crd/rst parser
- John Stone (Fri Feb 27 2004 - 14:07:28 CST)
- Teletchéa Stéphane (Fri Feb 27 2004 - 12:19:56 CST)
I: vmd on windows
- John Stone (Thu Dec 29 2011 - 22:21:19 CST)
- Sergio Decherchi (Tue Dec 20 2011 - 16:18:14 CST)
- Sergio Decherchi (Tue Dec 20 2011 - 07:48:55 CST)
IC from paratool
- Jan Saam (Fri Mar 02 2007 - 12:41:59 CST)
- Grazia Daminelli (Mon Feb 26 2007 - 02:35:27 CST)
icon in LABEL
- John Stone (Wed Jul 17 2002 - 10:10:03 CDT)
- Pascal Bonnet (Wed Jul 17 2002 - 08:17:58 CDT)
IDs of representations
- Leonardo Trabuco (Tue Dec 15 2009 - 11:30:26 CST)
- Carsten Olbrich (Tue Dec 15 2009 - 03:30:54 CST)
IED
- Vahdati N. (Wed Jun 18 2008 - 10:26:37 CDT)
- John Stone (Thu Oct 12 2006 - 15:28:12 CDT)
- Ran Friedman (Thu Oct 12 2006 - 08:23:42 CDT)
ied - again
- Nuno R. L. Ferreira (Tue Jul 19 2005 - 13:41:57 CDT)
IED 2.02 and VMD 1.8.7
- Vlad Cojocaru (Mon Dec 20 2010 - 09:31:41 CST)
- Jérôme Hénin (Wed Nov 03 2010 - 05:44:06 CDT)
- Jérôme Hénin (Wed Oct 13 2010 - 16:33:02 CDT)
- Birgitte Maria Elisabeth Brydsoe (Wed Oct 13 2010 - 09:47:39 CDT)
- Birgitte Maria Elisabeth Brydsoe (Wed Oct 13 2010 - 09:28:13 CDT)
- Hannes Loeffler (Wed Oct 13 2010 - 09:24:33 CDT)
- Axel Kohlmeyer (Wed Oct 13 2010 - 09:23:19 CDT)
- Birgitte Maria Elisabeth Brydsoe (Wed Oct 13 2010 - 08:33:00 CDT)
IED analysis
- John Stone (Mon Nov 24 2008 - 10:34:42 CST)
- ÖÜÎÄ²ý (Wed Nov 19 2008 - 02:19:19 CST)
ied and gypython
- Axel Kohlmeyer (Thu Jul 16 2009 - 09:22:39 CDT)
- gurunath katagi (Thu Jul 16 2009 - 02:16:21 CDT)
IED and output of labels
- Vlad Cojocaru (Mon Feb 07 2005 - 08:55:35 CST)
IED individual eigenvectors/movie
- John Stone (Thu Nov 02 2006 - 11:27:52 CST)
- Vlad Cojocaru (Thu Nov 02 2006 - 05:40:08 CST)
- nadiav_at_soton.ac.uk (Thu Nov 02 2006 - 05:04:05 CST)
IED on MacOSX 10.3.9
- Axel Kohlmeyer (Tue Jun 10 2008 - 07:03:30 CDT)
- Peter Jones (Tue Jun 10 2008 - 05:54:54 CDT)
ied on vmd
- John Stone (Tue Apr 04 2006 - 16:41:02 CDT)
- L. Michel Espinoza-Fonseca (Tue Apr 04 2006 - 16:11:30 CDT)
IED problem update: IED works only with vmd 1.8.2
- John Stone (Mon Oct 17 2005 - 17:27:23 CDT)
- Vlad Cojocaru (Mon Oct 17 2005 - 05:21:28 CDT)
IED with VMD 1.8.3 on Debian
- Vlad Cojocaru (Thu Oct 13 2005 - 07:50:52 CDT)
IED, output from nmode (amber)
- David A. Case (Tue Sep 12 2006 - 10:18:35 CDT)
- nadiav_at_soton.ac.uk (Fri Sep 08 2006 - 07:55:42 CDT)
IED-plugin
- John Stone (Thu Jan 26 2006 - 12:45:52 CST)
- Nadia Vahdati (Thu Jan 26 2006 - 04:46:40 CST)
ied.py : tk.h version (8.3) doesn't match libtk.a version (8.4)
- John Stone (Wed May 18 2005 - 13:34:10 CDT)
- IBC strbio (Wed May 18 2005 - 05:38:02 CDT)
IED/Tkinter problems
- Birgitte Maria Elisabeth Brydsoe (Fri Sep 24 2010 - 09:13:43 CDT)
IED2.02 Problem
- John Stone (Tue Sep 06 2005 - 09:38:58 CDT)
- xzp02_at_mails.tsinghua.edu.cn (Tue Sep 06 2005 - 07:27:16 CDT)
If I want to modify measure.C, what should I do?
- John Stone (Mon Apr 09 2007 - 16:52:50 CDT)
- lanhua (Mon Apr 09 2007 - 15:59:18 CDT)
illegal mouse mode
- John Stone (Tue Nov 15 2005 - 11:24:07 CST)
- Dan Wright (Fri Nov 11 2005 - 17:00:07 CST)
- Axel Kohlmeyer (Fri Nov 11 2005 - 13:33:13 CST)
illegal stereo mode
- Axel Kohlmeyer (Fri Jan 28 2011 - 09:23:45 CST)
- Nicolas Belloy (Fri Jan 28 2011 - 08:58:11 CST)
- John Stone (Fri Jan 28 2011 - 08:55:05 CST)
- Nicolas Belloy (Fri Jan 28 2011 - 08:34:28 CST)
ILS tool fails
- John Stone (Tue Jul 13 2010 - 11:39:50 CDT)
- Aaron Oakley (Fri Jul 09 2010 - 20:25:38 CDT)
image jumps
- John Stone (Tue Jun 25 2002 - 15:00:36 CDT)
- Y U Sasidhar (Sat Jun 22 2002 - 00:03:46 CDT)
Image rendering using pov-ray
- Dong Xu (Fri Jun 13 2008 - 14:35:45 CDT)
- John Stone (Fri Jun 13 2008 - 14:48:24 CDT)
- John Stone (Thu Jun 12 2008 - 22:04:47 CDT)
- Dong Xu (Thu Jun 12 2008 - 21:31:03 CDT)
- Axel Kohlmeyer (Mon Jun 09 2008 - 21:34:57 CDT)
- Axel Kohlmeyer (Mon Jun 09 2008 - 21:30:35 CDT)
- Dong Xu (Mon Jun 09 2008 - 20:35:55 CDT)
images for publication
- Falgun Shah (Wed Mar 04 2009 - 00:20:59 CST)
- Falgun Shah (Wed Mar 04 2009 - 00:06:27 CST)
- John Stone (Wed Mar 04 2009 - 00:11:11 CST)
- John Stone (Tue Mar 03 2009 - 23:49:42 CST)
- John Stone (Tue Mar 03 2009 - 14:51:18 CST)
- Falgun Shah (Sun Mar 01 2009 - 15:23:12 CST)
IMD - remove forces on mouse release
- jonathan KHAO (Sun Apr 08 2012 - 15:50:44 CDT)
- Axel Kohlmeyer (Sun Apr 08 2012 - 14:12:19 CDT)
- jonathan KHAO (Sun Apr 08 2012 - 13:05:45 CDT)
IMD in VMD
- John Stone (Wed Dec 30 2009 - 12:39:10 CST)
- John Stone (Wed Dec 30 2009 - 12:55:28 CST)
- Axel Kohlmeyer (Wed Dec 30 2009 - 00:58:00 CST)
- Lixia Jin Day (Tue Dec 29 2009 - 17:42:57 CST)
IMD interface code and endianness
- John Stone (Fri Sep 12 2003 - 14:10:51 CDT)
- Marc Baaden (Fri May 30 2003 - 08:39:14 CDT)
- John Stone (Wed May 28 2003 - 14:36:42 CDT)
- Marc Baaden (Wed May 28 2003 - 14:21:19 CDT)
- John Stone (Wed May 28 2003 - 13:55:17 CDT)
- Marc Baaden (Wed May 28 2003 - 13:36:18 CDT)
IMD interface for VASP
- Axel Kohlmeyer (Mon Jul 20 2009 - 19:03:45 CDT)
- Michael Robbert (Mon Jul 20 2009 - 17:54:36 CDT)
IMD per TCL
- John Stone (Fri Jun 20 2008 - 00:15:33 CDT)
- Axel Kohlmeyer (Tue May 27 2008 - 04:39:51 CDT)
- Stephan Frickenhaus (Tue May 27 2008 - 02:06:34 CDT)
IMD Plugin Errors
- John Stone (Tue Sep 28 2004 - 15:01:04 CDT)
- Shirley Hui (Sat Feb 21 2004 - 21:18:12 CST)
IMD question
- John Stone (Tue Jun 21 2005 - 15:48:42 CDT)
- wmsmith (Mon Jun 20 2005 - 13:38:18 CDT)
IMD with linux VMD client and IBM namd server
- John Stone (Mon Mar 13 2006 - 10:31:24 CST)
- Marc Baaden (Mon Mar 13 2006 - 07:29:36 CST)
IMD with Phantom Omni
- Mark Cunningham (Sun Mar 14 2010 - 14:45:21 CDT)
IMD, basic questions...
- Luis Rosales (Tue Mar 15 2005 - 19:01:29 CST)
IMDEnergies from python
- Charles Moad (Mon May 09 2005 - 22:51:43 CDT)
immersadesk
- John Stone (Fri Jan 18 2002 - 01:27:40 CST)
- Adrian E. Roitberg (Tue Apr 16 2002 - 09:06:25 CDT)
implicit casting
- brad noyes (Fri May 23 2003 - 15:25:40 CDT)
- John Stone (Fri May 23 2003 - 15:20:51 CDT)
- brad noyes (Fri May 23 2003 - 15:14:27 CDT)
Implicit Ligand Sampling
- Jacopo Sgrignani (Thu Jul 14 2011 - 14:50:21 CDT)
- Jacopo Sgrignani (Thu Jul 14 2011 - 11:05:37 CDT)
- Marc Zimmer (Sat Sep 25 2010 - 06:26:24 CDT)
Implicit Ligand Sampling-molecule rotation issue
- Jérôme Hénin (Mon Jan 09 2012 - 05:11:19 CST)
- Aaron Oakley (Sun Jan 08 2012 - 18:30:08 CST)
Implicit Patch for Nucleic Acids?
- Stefan Franzen (Fri Aug 12 2011 - 13:46:24 CDT)
implicit solvent
- Axel Kohlmeyer (Tue Mar 23 2010 - 12:00:04 CDT)
- Ajasja LjubetiÄ (Tue Mar 23 2010 - 10:57:54 CDT)
- politr_at_huji.ac.il (Tue Mar 23 2010 - 09:16:29 CDT)
Import gromos output file into VMD without format conversion?
- Axel Kohlmeyer (Thu Sep 22 2005 - 07:32:55 CDT)
- John Stone (Wed Sep 21 2005 - 14:27:45 CDT)
- Nathan C. Rockwell (Wed Sep 21 2005 - 14:17:10 CDT)
- Mauricio Carrillo Tripp (Wed Sep 21 2005 - 12:51:04 CDT)
- John Stone (Wed Sep 21 2005 - 10:20:02 CDT)
- Stanley Lan (Wed Sep 21 2005 - 09:37:35 CDT)
import QM single point calculation
- Tim Werner (Wed Jun 11 2008 - 04:27:02 CDT)
import selection in array for script
- John Stone (Tue Jul 12 2011 - 13:04:43 CDT)
- KIRTANA S (Fri Jul 08 2011 - 15:36:50 CDT)
- Axel Kohlmeyer (Fri Jul 08 2011 - 15:04:46 CDT)
- KIRTANA S (Fri Jul 08 2011 - 14:37:11 CDT)
import xyz file
- John Stone (Tue Jan 26 2010 - 20:48:30 CST)
- Naiyin Yu (Tue Jan 26 2010 - 16:51:04 CST)
ImportError: cannot import name AtomSel
- Wim R. Cardoen (Tue Jan 24 2012 - 11:26:23 CST)
- John Stone (Mon Jan 23 2012 - 16:35:53 CST)
- Axel Kohlmeyer (Mon Jan 23 2012 - 16:33:29 CST)
- Wim R. Cardoen (Mon Jan 23 2012 - 15:36:19 CST)
importing VMD python modules from external interpreterr
- John Stone (Thu Sep 21 2006 - 05:41:32 CDT)
- Dr. Seth Olsen (Wed Sep 20 2006 - 01:44:24 CDT)
- John Stone (Tue Sep 19 2006 - 22:49:20 CDT)
- Dr. Seth Olsen (Tue Sep 19 2006 - 22:19:02 CDT)
imposing period boundary conditions in a simulation with a crystal
- Axel Kohlmeyer (Wed Sep 06 2006 - 09:23:39 CDT)
- Ana Celia Araujo Vila Verde (Wed Sep 06 2006 - 08:31:59 CDT)
- Axel Kohlmeyer (Tue Sep 05 2006 - 12:00:19 CDT)
- Ana Celia Araujo Vila Verde (Tue Sep 05 2006 - 11:13:06 CDT)
Impressive Glashutte timepieces!
- Lorena Shipley (Wed Apr 30 2008 - 08:35:35 CDT)
Improve OFF plugin: handle colors
- John Stone (Wed Dec 07 2011 - 00:56:19 CST)
- FX (Mon Dec 05 2011 - 07:20:06 CST)
Improved VMD performance on MacOSX 10.5.2
- John Stone (Tue Feb 12 2008 - 18:26:09 CST)
- Christoph Weber (Tue Feb 12 2008 - 16:51:14 CST)
Improving VMD performance on Linux?
- Olaf Lenz (Mon Oct 20 2008 - 07:37:58 CDT)
- Olaf Lenz (Mon Oct 20 2008 - 07:57:28 CDT)
- Leandro Martínez (Mon Oct 20 2008 - 07:22:08 CDT)
- Benjamin Bouvier (Mon Oct 20 2008 - 06:05:26 CDT)
- nbabcock_at_qis.ucalgary.ca (Sat Oct 18 2008 - 14:06:35 CDT)
in search of lipid files
- Francesco Pietra (Thu Dec 03 2009 - 16:11:43 CST)
In-Residence Training at the Theoretical & Computational Biophysics Group, July 16-27, 2012
- TCBG Workshop (Mon Apr 30 2012 - 17:02:14 CDT)
Include HETATM into *.psf file
- Davit Hakobyan (Thu May 06 2004 - 01:05:11 CDT)
- Tim Isgro (Wed May 05 2004 - 17:24:12 CDT)
- Davit Hakobyan (Mon May 03 2004 - 14:04:32 CDT)
incompatibility between VMD & NAMD for reading Amber crd files
- David A. Case (Wed Jun 23 2004 - 12:39:42 CDT)
- Kamp, Marc vander (Tue Jun 22 2004 - 04:20:16 CDT)
- John Stone (Mon Jun 21 2004 - 14:53:13 CDT)
- John Stone (Mon Jun 21 2004 - 09:58:31 CDT)
- Kamp, Marc vander (Mon Jun 21 2004 - 07:33:11 CDT)
Incomplete Display
- John Stone (Mon Jun 05 2006 - 17:02:21 CDT)
- Leonardo G. Trabuco (Mon Jun 05 2006 - 16:14:27 CDT)
- John Stone (Mon Jun 05 2006 - 10:30:08 CDT)
- Vineet Pande (Sun Jun 04 2006 - 09:53:18 CDT)
- Vineet Pande (Sat Jun 03 2006 - 10:58:02 CDT)
- Leonardo G. Trabuco (Fri Jun 02 2006 - 13:24:25 CDT)
- Vineet Pande (Fri Jun 02 2006 - 09:17:51 CDT)
Inconsistencies in NAMD simulations
- Chandra Ramananjara (Tue Jan 22 2008 - 02:49:53 CST)
incorrect number of coordinates in .dcd file error
- Ajasja LjubetiÄ (Tue Feb 21 2012 - 02:17:37 CST)
- abinayar_at_imsc.res.in (Tue Feb 21 2012 - 00:53:08 CST)
Incorrect results from 'measure dipole -masscenter'
- Stéphane Pezennec (Thu Feb 24 2011 - 03:05:22 CST)
- John Stone (Wed Feb 23 2011 - 13:55:38 CST)
- Stéphane Pezennec (Wed Feb 23 2011 - 10:30:36 CST)
- Axel Kohlmeyer (Wed Feb 23 2011 - 09:12:37 CST)
- Stéphane Pezennec (Wed Feb 23 2011 - 07:24:02 CST)
incorrect tube, trace and ribbon drawings
- Justin Gullingsrud (Mon Aug 21 2000 - 13:32:52 CDT)
- Lars Burgdorf (Mon Aug 21 2000 - 08:15:42 CDT)
increase light under depth cueing
- Cojocaru,Vlad (Sun Apr 29 2007 - 15:12:54 CDT)
- Axel Kohlmeyer (Sun Apr 29 2007 - 12:43:19 CDT)
- Olaf Lenz (Sun Apr 29 2007 - 03:31:34 CDT)
- Axel Kohlmeyer (Sat Apr 28 2007 - 17:45:36 CDT)
- Vlad Cojocaru (Sat Apr 28 2007 - 17:46:59 CDT)
increase size membrane
- John Stone (Tue Nov 08 2005 - 15:13:33 CST)
- andrea spitaleri (Fri Nov 04 2005 - 02:58:43 CST)
Increasing MAXATOMBONDS?
- John Stone (Mon Jan 21 2008 - 12:11:51 CST)
- Oliver Beckstein (Mon Jan 21 2008 - 10:42:05 CST)
- John Stone (Wed Jan 09 2008 - 01:22:13 CST)
- Oliver Beckstein (Thu Dec 20 2007 - 15:50:10 CST)
- John Stone (Wed Dec 19 2007 - 20:59:02 CST)
- Oliver Beckstein (Tue Dec 18 2007 - 16:05:02 CST)
- John Stone (Tue Dec 18 2007 - 12:56:55 CST)
- Oliver Beckstein (Mon Dec 17 2007 - 13:37:42 CST)
Increasing use of RAM even if I put unset/delete for selections! Due to use of arrays?
- John Stone (Tue Aug 14 2007 - 12:14:38 CDT)
- Philipp Schön (Tue Aug 14 2007 - 05:28:13 CDT)
indented atomselect variables
- John Stone (Mon Feb 05 2007 - 14:45:44 CST)
- namd vmd (Mon Feb 05 2007 - 14:30:48 CST)
indentified particular water molecule
- Sangita Kachhap (Thu May 19 2011 - 07:24:03 CDT)
independent stereo display
- Axel Kohlmeyer (Thu Oct 23 2008 - 14:15:13 CDT)
- Petrica GASCA (Thu Oct 23 2008 - 11:39:07 CDT)
index
- Viswanadham Sridhara (Thu Nov 03 2005 - 16:11:54 CST)
- Viswanadham Sridhara (Thu Sep 08 2005 - 10:59:27 CDT)
- John Stone (Thu Sep 08 2005 - 10:54:50 CDT)
- John Stone (Thu Sep 08 2005 - 10:39:34 CDT)
- VISWANADHA SRIDHARA (Thu Sep 08 2005 - 10:29:54 CDT)
- Sanjeev B.S. (Fri Aug 09 2002 - 02:28:45 CDT)
IndexError in ied
- Kateryna Miroshnychenko (Tue Jul 12 2005 - 08:22:39 CDT)
- Kateryna Miroshnychenko (Thu Jul 07 2005 - 02:23:06 CDT)
- John Stone (Wed Jul 06 2005 - 12:46:23 CDT)
- Kateryna Miroshnychenko (Wed Jul 06 2005 - 11:27:11 CDT)
indexing water molecules
- John Stone (Thu Nov 03 2005 - 16:43:59 CST)
- VISWANADHA SRIDHARA (Thu Nov 03 2005 - 16:21:15 CST)
Individual atoms trajectory
- John Stone (Fri May 16 2008 - 01:33:59 CDT)
- Alexandre A. Vakhrouchev (Fri May 16 2008 - 02:08:59 CDT)
- Alexandre A. Vakhrouchev (Fri May 16 2008 - 01:08:22 CDT)
- John Stone (Thu May 15 2008 - 23:42:40 CDT)
- Alexandre A. Vakhrouchev (Wed May 14 2008 - 00:34:38 CDT)
Individual components of RMSD?
- Axel Kohlmeyer (Thu Mar 08 2012 - 13:07:49 CST)
- John Stone (Thu Mar 08 2012 - 12:15:47 CST)
- Andrew Jewett (Tue Mar 06 2012 - 20:31:31 CST)
- patrick wintrode (Tue Mar 06 2012 - 11:36:44 CST)
Inexpensive Louis Vuitton bags
- Buford Granger (Thu Apr 24 2008 - 09:03:05 CDT)
- Royce Rosa (Sat Apr 12 2008 - 18:57:58 CDT)
info for computational chemistry awards, please forward
- Carlos Simmerling (Fri Feb 20 2009 - 10:22:27 CST)
Info regarding residue based CG simulation
- anshudx_at_indiatimes.com (Thu May 15 2008 - 13:04:11 CDT)
information regarding tcl script for cell volume changing with each frame
- Axel Kohlmeyer (Sat Mar 03 2012 - 17:25:43 CST)
- siladitya mukherjee (Sat Mar 03 2012 - 16:18:07 CST)
- Axel Kohlmeyer (Sat Mar 03 2012 - 14:45:14 CST)
- siladitya mukherjee (Sat Mar 03 2012 - 13:50:09 CST)
init.tcl startup problem with vmd 1.8.3 (but 1.8.2 works)
- John Stone (Wed Mar 09 2005 - 13:22:59 CST)
- Sabuj Pattanayek (Wed Mar 09 2005 - 13:12:33 CST)
- John Stone (Wed Mar 09 2005 - 13:00:15 CST)
- Sabuj Pattanayek (Wed Mar 09 2005 - 12:53:36 CST)
- John Stone (Wed Mar 09 2005 - 12:45:19 CST)
- Sabuj Pattanayek (Wed Mar 09 2005 - 12:41:13 CST)
Initial configuration reorientation
- John Stone (Wed Aug 24 2011 - 12:43:52 CDT)
- Anna (Wed Aug 24 2011 - 11:48:38 CDT)
Initial configurations / topology for LAMMPS
- molecular dynamics (Thu Jul 14 2011 - 15:22:41 CDT)
initial run by vmd on loading a trajectory
- Dr. Y. U. Sasidhar (Thu Jan 30 2003 - 05:32:53 CST)
- Justin Gullingsrud (Wed Jan 29 2003 - 09:07:29 CST)
- Mikko Huhtala (Wed Jan 29 2003 - 02:28:56 CST)
- Dr. Y. U. Sasidhar (Tue Jan 28 2003 - 22:58:17 CST)
Inorganic Builder Plugin
- Robert Brunner (Thu Aug 21 2008 - 08:31:19 CDT)
- John Stone (Wed Aug 20 2008 - 23:01:45 CDT)
- max_at_liaad.up.pt (Wed Aug 20 2008 - 04:57:09 CDT)
- Robert Brunner (Wed Jul 09 2008 - 10:38:27 CDT)
- Renata KWIECIEN (Wed Jul 09 2008 - 02:56:17 CDT)
input file
- John Stone (Wed Aug 18 2010 - 15:00:41 CDT)
- Agnieszka Sobkiewicz (Mon Aug 09 2010 - 06:41:18 CDT)
input file for PO3
- lily jin (Tue Mar 28 2006 - 11:02:34 CST)
Input File Format
- Axel Kohlmeyer (Wed Oct 21 2009 - 14:52:05 CDT)
- Arian Arian (Wed Oct 21 2009 - 14:03:01 CDT)
Input selection as xyz co-ordinates
- John Stone (Wed Feb 22 2012 - 22:43:52 CST)
- Ban Arn (Wed Feb 22 2012 - 09:09:33 CST)
Inquiry concerning the plugin "Inorganic builder"
- Axel Kohlmeyer (Mon Jun 23 2008 - 10:11:04 CDT)
- Anneta Tzampazi (Mon Jun 23 2008 - 05:23:46 CDT)
Insall Problem VMD Linux 1.8.6 Part II!
- John Stone (Sun Apr 06 2008 - 23:48:11 CDT)
- Axel Kohlmeyer (Sun Apr 06 2008 - 23:50:58 CDT)
- Peter Freddolino (Sun Apr 06 2008 - 23:31:25 CDT)
- John Stone (Sun Apr 06 2008 - 23:23:31 CDT)
- Peter Hains (Sun Apr 06 2008 - 23:07:55 CDT)
insert a protein into a membrane
- Leonardo Trabuco (Tue Jul 21 2009 - 21:17:29 CDT)
- Lixia Jin Day (Tue Jul 21 2009 - 13:41:21 CDT)
Inserting amino acids to a protein
- Ajasja LjubetiÄ (Fri Aug 06 2010 - 02:40:35 CDT)
- Gregorio Alanislobato (Thu Aug 05 2010 - 14:24:56 CDT)
Inserting missing residues
- Michael Chen (Sat Jun 12 2004 - 16:49:35 CDT)
inserting protein into membrane
- John Stone (Fri May 18 2007 - 16:21:10 CDT)
- baxy (Thu May 17 2007 - 08:39:58 CDT)
Inspired Internet Business Opportunity!
- jo333_4_at_lawrence-lca.co.uk (Wed Sep 06 2000 - 13:38:24 CDT)
install 1.8.3 on RHEL4
- Axel Kohlmeyer (Fri Mar 18 2005 - 15:45:06 CST)
- John Stone (Fri Mar 18 2005 - 10:52:52 CST)
- HuiZhe Li (Fri Mar 18 2005 - 10:38:30 CST)
- John Stone (Fri Mar 18 2005 - 08:14:00 CST)
- HuiZhe Li (Fri Mar 18 2005 - 03:00:00 CST)
- HuiZhe Li (Fri Mar 18 2005 - 02:51:05 CST)
- Dallas Warren (Thu Mar 17 2005 - 16:16:25 CST)
- John Stone (Thu Mar 17 2005 - 14:05:45 CST)
- HuiZhe Li (Thu Mar 17 2005 - 13:23:15 CST)
Install and Configure Problems
- Axel Kohlmeyer (Wed Jan 03 2007 - 09:43:38 CST)
- christopher (Wed Jan 03 2007 - 08:57:14 CST)
install of new VMD 1.8
- John Stone (Thu Feb 06 2003 - 17:27:38 CST)
- Yongmei Wang (Thu Feb 06 2003 - 15:56:44 CST)
install on Centos - issues
- John Stone (Wed Jul 28 2010 - 00:01:41 CDT)
- Joseph Norris (Fri Jul 23 2010 - 18:48:04 CDT)
install plugin: problems with vmd_install_extension
- Axel Kohlmeyer (Fri Apr 10 2009 - 10:13:57 CDT)
- Axel Kohlmeyer (Fri Apr 10 2009 - 09:10:13 CDT)
- Steve Massard (Fri Apr 10 2009 - 04:35:45 CDT)
Install problem VMD Linux 1.8.6
- Axel Kohlmeyer (Sun Apr 06 2008 - 20:21:11 CDT)
- John Stone (Sun Apr 06 2008 - 20:15:31 CDT)
- Peter Hains (Sun Apr 06 2008 - 19:19:15 CDT)
Install VMD binary with CUDA, CUDA card detected but then error "no CUDA-capable device is available"
- John Stone (Thu Sep 17 2009 - 21:34:36 CDT)
- Jim Parker (Thu Sep 17 2009 - 19:33:51 CDT)
Install VMD binary with CUDA, CUDA card detected but then error "no CUDA-capable device is available"--Solved
- John Stone (Sun Oct 11 2009 - 22:43:17 CDT)
- Jim Parker (Sun Oct 11 2009 - 21:31:05 CDT)
Install VMD on intel i5
- John Stone (Mon Jul 12 2010 - 11:52:30 CDT)
- moacyr comar (Wed Jul 07 2010 - 12:00:18 CDT)
Install VMD on Mandrake Linux
- huaer_at_myway.com (Wed Apr 06 2005 - 11:06:26 CDT)
- John Stone (Wed Apr 06 2005 - 10:59:38 CDT)
- huaer_at_myway.com (Wed Apr 06 2005 - 10:37:34 CDT)
Install VMD on Window XP
- John Stone (Fri Oct 29 2004 - 15:34:06 CDT)
- bybaker_at_itsa.ucsf.edu (Thu Oct 28 2004 - 22:19:46 CDT)
- bybaker_at_itsa.ucsf.edu (Thu Oct 28 2004 - 22:17:59 CDT)
Install VMD with plugins to NAMD
- Jim Parker (Wed Sep 16 2009 - 23:29:11 CDT)
- John Stone (Wed Sep 16 2009 - 23:02:35 CDT)
- Jim Parker (Wed Sep 16 2009 - 22:53:24 CDT)
- John Stone (Wed Sep 16 2009 - 22:04:35 CDT)
- Jim Parker (Wed Sep 16 2009 - 21:44:31 CDT)
Install VMD with plugins to NAMD--solved
- Jim Parker (Thu Sep 17 2009 - 19:10:07 CDT)
installation
- Fernanda S. (Sun Feb 15 2009 - 13:32:20 CST)
- John Stone (Sun Feb 15 2009 - 12:54:29 CST)
- Axel Kohlmeyer (Sun Feb 15 2009 - 12:46:34 CST)
- Fernanda S. (Sun Feb 15 2009 - 08:05:10 CST)
- John Stone (Sat Feb 14 2009 - 19:37:26 CST)
- John Stone (Sat Feb 14 2009 - 19:34:29 CST)
- Fernanda S. (Sat Feb 14 2009 - 17:18:57 CST)
- John Stone (Sat Feb 14 2009 - 14:32:53 CST)
- Ramon Crehuet (Fri Feb 13 2009 - 05:08:51 CST)
- Fernanda S. (Thu Feb 12 2009 - 13:08:19 CST)
- John Stone (Thu Feb 12 2009 - 13:40:02 CST)
Installation and running on VMD on Debian Testing System
- Lorenzo Isella (Wed Oct 03 2007 - 17:50:04 CDT)
- Axel Kohlmeyer (Wed Oct 03 2007 - 12:42:25 CDT)
- Dan Wright (Wed Oct 03 2007 - 12:05:38 CDT)
- Brian Bennion (Wed Oct 03 2007 - 09:51:54 CDT)
- Lorenzo Isella (Wed Oct 03 2007 - 07:48:08 CDT)
installation error
- Urszula Uciechowska (Wed Feb 15 2012 - 03:28:59 CST)
Installation Error Involving TLC
- Axel Kohlmeyer (Mon May 28 2007 - 15:36:40 CDT)
- John Stone (Mon May 28 2007 - 15:35:26 CDT)
- Claw Isthelaw (Sun May 27 2007 - 22:37:30 CDT)
- Axel Kohlmeyer (Fri May 25 2007 - 13:23:11 CDT)
- Peter Freddolino (Fri May 25 2007 - 14:02:32 CDT)
- Jana Black (Fri May 25 2007 - 13:44:00 CDT)
installation errors with src/hesstrans_wrap.C
- AustinSmall_at_comcast.net (Thu Jul 26 2007 - 16:16:39 CDT)
- John Stone (Thu Jul 26 2007 - 16:23:47 CDT)
Installation issue
- Hugh Martin (Tue Apr 28 2009 - 09:39:29 CDT)
- John Stone (Tue Apr 28 2009 - 09:29:20 CDT)
- Hugh Martin (Tue Apr 28 2009 - 08:09:04 CDT)
installation of APBS plug-in in VMD 1.8.6
- Lhee, SangMoon (Thu Oct 25 2007 - 21:14:47 CDT)
- John Stone (Thu Oct 25 2007 - 21:29:12 CDT)
installation of VIDEOMACH, how to point to the location of the files
- Dieter Blaas (Sun Feb 06 2005 - 16:23:26 CST)
- John Stone (Fri Feb 04 2005 - 14:31:15 CST)
- Chang, Christopher (Fri Feb 04 2005 - 13:49:17 CST)
- Dieter Blaas (Fri Feb 04 2005 - 10:22:34 CST)
- John Stone (Fri Feb 04 2005 - 09:57:09 CST)
- Dieter Blaas (Fri Feb 04 2005 - 04:37:07 CST)
installation of vmd 1.8.3
- Dmitry Osolodkin (Mon Jun 06 2005 - 05:57:34 CDT)
- John Stone (Fri Jun 03 2005 - 14:02:11 CDT)
- Dmitry Osolodkin (Fri Jun 03 2005 - 11:49:21 CDT)
Installation of VMD on Mandriva Linux 2006
- John Stone (Sat Aug 12 2006 - 13:34:42 CDT)
- Wei Liu (Sat Aug 12 2006 - 18:52:07 CDT)
- John Stone (Sat Aug 12 2006 - 10:40:12 CDT)
- Wei Liu (Sat Aug 12 2006 - 13:23:58 CDT)
Installation of VMD-1.8.4b11 binary + IED-2.02 on RH9
- Martinek Tamas (Tue Feb 14 2006 - 08:58:15 CST)
installation on suse linux 10.3
- John Stone (Fri Jan 04 2008 - 12:39:02 CST)
- s lal badshah (Wed Dec 26 2007 - 23:28:27 CST)
Installation on vmd-1.8 on mandrake10
- Priti Hansia (Sat Aug 28 2004 - 02:26:36 CDT)
- John Stone (Fri Aug 27 2004 - 10:13:41 CDT)
- Brian Bennion (Fri Aug 27 2004 - 10:06:03 CDT)
- John Stone (Fri Aug 27 2004 - 09:28:48 CDT)
- Priti Hansia (Thu Aug 26 2004 - 23:06:11 CDT)
- John Stone (Thu Aug 26 2004 - 14:09:52 CDT)
- Priti Hansia (Thu Aug 26 2004 - 10:47:22 CDT)
installation problem
- John Stone (Wed Dec 30 2009 - 13:18:54 CST)
- John Stone (Wed Dec 30 2009 - 12:53:37 CST)
- Axel Kohlmeyer (Wed Dec 23 2009 - 14:30:56 CST)
- Jin Wen (Wed Dec 23 2009 - 14:13:05 CST)
- Axel Kohlmeyer (Wed Dec 23 2009 - 02:14:47 CST)
- Ale Gomez (Tue Dec 22 2009 - 20:54:29 CST)
- Jin Wen (Tue Dec 22 2009 - 17:46:43 CST)
- Esther Brugger (Wed Nov 01 2006 - 08:59:39 CST)
- John Stone (Tue Oct 31 2006 - 19:49:04 CST)
- Axel Kohlmeyer (Tue Oct 31 2006 - 18:32:13 CST)
- Esther Brugger (Tue Oct 31 2006 - 17:59:07 CST)
- John Stone (Tue Nov 04 2003 - 10:47:44 CST)
- Brian Bennion (Tue Nov 04 2003 - 10:16:20 CST)
- Laura De Luca (Tue Nov 04 2003 - 04:59:38 CST)
Installation problem -Solvate
- Axel Kohlmeyer (Wed Jun 29 2011 - 05:25:15 CDT)
- mohan maruthi sena (Tue Jun 28 2011 - 23:06:58 CDT)
installation problem on solaris 9
- John Stone (Tue Jan 03 2006 - 10:31:44 CST)
- Axel Kohlmeyer (Sat Dec 31 2005 - 09:42:53 CST)
- deepti sethi (Sat Dec 31 2005 - 03:57:55 CST)
installation problem vmd 1.8.6 on fedora 3
- Axel Kohlmeyer (Sat Feb 09 2008 - 07:57:27 CST)
- Bertrand P. S. Russell (Sat Feb 09 2008 - 05:22:24 CST)
- John Stone (Fri Feb 08 2008 - 11:27:28 CST)
- kinshuk_at_chem.iitb.ac.in (Fri Feb 08 2008 - 00:15:50 CST)
Installation problem with VMD, Multiseq, and BLAST
- David Guertin (Thu Feb 03 2011 - 16:00:11 CST)
- John Stone (Thu Feb 03 2011 - 16:10:24 CST)
- Kirby Vandivort (Tue Feb 01 2011 - 14:19:55 CST)
- David Guertin (Tue Feb 01 2011 - 12:50:04 CST)
- Kirby Vandivort (Tue Feb 01 2011 - 11:08:55 CST)
- David Guertin (Tue Feb 01 2011 - 10:49:24 CST)
- David Guertin (Tue Feb 01 2011 - 10:15:48 CST)
Installation problem.
- John Stone (Mon Dec 05 2005 - 14:07:23 CST)
- Taeho Kim (Sun Dec 04 2005 - 22:31:24 CST)
installation problem: InstallShield
- John Stone (Tue May 23 2006 - 14:39:44 CDT)
- ganderle_at_optonline.net (Tue May 23 2006 - 14:26:50 CDT)
Installation problems on openSUSE 10.3
- Lawrence Wickert (Sat Nov 15 2008 - 20:22:44 CST)
installation problems with Redhat 9
- james tomomi macdonald (Wed Apr 23 2003 - 13:53:11 CDT)
- John Stone (Wed Apr 23 2003 - 13:27:57 CDT)
- james tomomi macdonald (Wed Apr 23 2003 - 13:15:22 CDT)
Installation problems with VMD 1.9
- Paul Anderson (Fri Nov 18 2011 - 12:51:34 CST)
- John Stone (Fri Nov 18 2011 - 11:24:03 CST)
- PaulW (Thu Nov 17 2011 - 07:17:44 CST)
installation trouble
- John Stone (Tue Jun 07 2011 - 15:58:43 CDT)
- Michael Zimmermann (Fri Jun 03 2011 - 14:25:31 CDT)
- John Stone (Fri Jun 03 2011 - 09:54:39 CDT)
- Michael Zimmermann (Fri Jun 03 2011 - 09:38:46 CDT)
- John Stone (Thu Jun 02 2011 - 23:11:53 CDT)
- Michael Zimmermann (Thu Jun 02 2011 - 23:00:40 CDT)
Installation/Upgrade Error
- Phelan Jr., Frederick R. Dr. (Wed Apr 20 2011 - 16:48:08 CDT)
- John Stone (Wed Apr 20 2011 - 16:05:38 CDT)
- Phelan Jr., Frederick R. Dr. (Wed Apr 20 2011 - 15:57:49 CDT)
installed plugin won't show up next time
- accomp lin (Fri Apr 24 2009 - 04:59:22 CDT)
- Axel Kohlmeyer (Thu Apr 23 2009 - 08:45:51 CDT)
- accomp lin (Thu Apr 23 2009 - 06:58:38 CDT)
installed vmd_LINUXIA64 but recieve error : /usr/local/vmd/vmd_LINUX: command not found
- Axel Kohlmeyer (Wed Nov 14 2007 - 20:34:06 CST)
- James.Beavis_at_csiro.au (Wed Nov 14 2007 - 19:28:02 CST)
- Axel Kohlmeyer (Tue Nov 13 2007 - 23:50:04 CST)
- James.Beavis_at_csiro.au (Tue Nov 13 2007 - 21:47:43 CST)
Installer problem
- John Stone (Sat Aug 21 2004 - 12:20:36 CDT)
- Peter Freddolino (Sat Aug 21 2004 - 09:55:02 CDT)
installing and running VMD on Windows 64-bit
- John Stone (Fri Nov 11 2011 - 09:32:51 CST)
- Rabab Toubar (Thu Nov 10 2011 - 15:08:05 CST)
- Dennis N Bromley (Thu Nov 10 2011 - 12:12:43 CST)
- John Stone (Thu Nov 10 2011 - 10:05:29 CST)
- Rabab Toubar (Thu Nov 10 2011 - 09:17:54 CST)
Installing CATDCD on a Mac
- John Stone (Fri Oct 28 2011 - 16:21:43 CDT)
- Michael LeVine (Fri Oct 28 2011 - 14:55:14 CDT)
installing IED on an sgi
- Denise Teotico (Tue Jan 03 2006 - 17:35:07 CST)
installing IED on vmd on windows
- John Stone (Tue Jan 03 2006 - 10:25:13 CST)
- Denise G Teotico (Tue Jan 03 2006 - 10:06:51 CST)
installing MSMS on OS X 10.4.9 (Intel)
- Ralph Jimenez (Thu May 10 2007 - 20:38:00 CDT)
- Morizono, Hiroki (Wed May 09 2007 - 08:56:52 CDT)
- Ralph Jimenez (Tue May 08 2007 - 22:38:01 CDT)
- Dan Wright (Tue May 08 2007 - 16:58:43 CDT)
- John Stone (Tue May 08 2007 - 14:20:52 CDT)
- Ralph Jimenez (Tue May 08 2007 - 14:15:54 CDT)
- John Stone (Tue May 08 2007 - 13:44:43 CDT)
- Ralph Jimenez (Tue May 08 2007 - 12:12:33 CDT)
- John Stone (Mon May 07 2007 - 21:44:39 CDT)
- Ralph Jimenez (Mon May 07 2007 - 21:37:38 CDT)
Installing Multiseq updates
- Jeremias Corradi (Tue Sep 22 2009 - 14:24:43 CDT)
- Jeremias Corradi (Sat Sep 19 2009 - 11:10:11 CDT)
- Kirby Vandivort (Thu Sep 17 2009 - 11:54:44 CDT)
- Kirby Vandivort (Thu Sep 17 2009 - 10:44:07 CDT)
- Jeremias Corradi (Thu Sep 17 2009 - 08:42:51 CDT)
installing problem python 2.2.2 for ied on amd64
- John Stone (Thu Feb 02 2006 - 17:51:13 CST)
- Florian Haberl (Thu Feb 02 2006 - 08:50:36 CST)
Installing VMD
- Joseph Bylund (Tue Mar 16 2010 - 13:22:27 CDT)
- John Stone (Tue Mar 16 2010 - 12:55:29 CDT)
- Salvador H-V (Tue Mar 16 2010 - 12:26:08 CDT)
Installing VMD 1.8.5 pon ubuntu linux
- Ran Friedman (Tue Dec 05 2006 - 09:32:07 CST)
- John Stone (Mon Dec 04 2006 - 15:33:19 CST)
- Ran Friedman (Mon Dec 04 2006 - 03:24:43 CST)
- John Stone (Fri Dec 01 2006 - 10:41:00 CST)
- Ran Friedman (Fri Dec 01 2006 - 07:04:02 CST)
Installing VMD 1.8.5 pon ubuntu linux]
- Ran Friedman (Mon Dec 04 2006 - 12:58:06 CST)
Installing VMD 1.8.6
- John Stone (Tue Jun 05 2007 - 10:31:11 CDT)
- Francesco Pietra (Tue Jun 05 2007 - 01:16:14 CDT)
- John Stone (Mon Jun 04 2007 - 16:45:08 CDT)
- Francesco Pietra (Mon Jun 04 2007 - 16:14:29 CDT)
- John Stone (Mon Jun 04 2007 - 13:09:42 CDT)
- Axel Kohlmeyer (Mon Jun 04 2007 - 08:03:30 CDT)
- Olaf Lenz (Mon Jun 04 2007 - 08:54:21 CDT)
- Philipp Schoen1 (Mon Jun 04 2007 - 07:54:24 CDT)
Installing VMD 1.8.7 on i686/SL5
- John Stone (Wed Mar 02 2011 - 10:02:46 CST)
- David Huggins (Wed Mar 02 2011 - 09:41:34 CST)
- Olaf Lenz (Wed Mar 02 2011 - 08:31:01 CST)
- David Huggins (Wed Mar 02 2011 - 07:38:14 CST)
Installing VMD on a PC
- John Stone (Thu Jan 25 2007 - 01:03:19 CST)
- Axel Kohlmeyer (Wed Jan 24 2007 - 19:49:17 CST)
- Trinh Vo (Wed Jan 24 2007 - 18:58:06 CST)
Installing VMD on Debian Linux
- Cun Zhang (Tue Oct 25 2011 - 03:53:49 CDT)
- Axel Kohlmeyer (Fri Oct 14 2011 - 07:47:38 CDT)
- James Starlight (Fri Oct 14 2011 - 01:51:01 CDT)
Installing VMD on Fedora
- Peter Freddolino (Wed Sep 17 2008 - 07:18:07 CDT)
- Neelanjana Sengupta (Wed Sep 17 2008 - 03:32:02 CDT)
- John Stone (Tue Sep 16 2008 - 10:58:40 CDT)
- Neelanjana Sengupta (Tue Sep 16 2008 - 08:25:54 CDT)
installing vmd on IBM AIX 5
- John Stone (Fri Jan 27 2006 - 16:30:02 CST)
- John Stone (Fri Jan 27 2006 - 16:25:29 CST)
- John Stone (Fri Jan 27 2006 - 16:13:55 CST)
- John Stone (Fri Jan 27 2006 - 15:58:53 CST)
- mrg28_at_drexel.edu (Fri Jan 27 2006 - 15:22:45 CST)
Installing VMD to work with MSMS
- Audrey Salazar (Tue Aug 14 2007 - 13:42:35 CDT)
- John Stone (Tue Aug 14 2007 - 12:23:16 CDT)
- Axel Kohlmeyer (Tue Aug 14 2007 - 11:31:49 CDT)
- Audrey Salazar (Tue Aug 14 2007 - 11:07:38 CDT)
Installing VMD Windows version on 64-bit Windows Environment
- John Stone (Thu Dec 14 2006 - 14:41:09 CST)
- John Stone (Wed Nov 22 2006 - 11:50:36 CST)
- Peter Freddolino (Wed Nov 22 2006 - 10:52:07 CST)
- Axel Kohlmeyer (Wed Nov 22 2006 - 09:19:03 CST)
- Adrian Koh (Tue Nov 21 2006 - 21:30:01 CST)
Installing vmd-1.8.7 on LINUXAMD64
- Axel Kohlmeyer (Tue Dec 21 2010 - 08:49:30 CST)
- Michael Mwalaba (Tue Dec 21 2010 - 08:01:18 CST)
Installing VMFD in kubuntu..............
- Mustafa Burak Boz (Wed Aug 30 2006 - 11:36:49 CDT)
- Peter Freddolino (Wed Aug 30 2006 - 11:12:27 CDT)
- bertrand russell (Wed Aug 30 2006 - 10:59:37 CDT)
Intel HD Graphics and VMD
- John Stone (Sun Feb 27 2011 - 23:22:29 CST)
- Peixi Zhu (Thu Feb 24 2011 - 22:28:40 CST)
Intel HD3000 versus ATI Mobility Radeon 6310
- John Stone (Wed Aug 17 2011 - 00:50:43 CDT)
- Gianluca Interlandi (Wed Aug 17 2011 - 00:09:01 CDT)
Interaction Energy
- Axel Kohlmeyer (Wed Jun 02 2010 - 17:00:48 CDT)
- ban arn (Wed Jun 02 2010 - 16:17:14 CDT)
- John Stone (Wed Jun 02 2010 - 12:54:57 CDT)
- ban arn (Wed Jun 02 2010 - 11:35:57 CDT)
- John Stone (Wed Jun 02 2010 - 11:02:40 CDT)
- ban arn (Wed Jun 02 2010 - 07:29:38 CDT)
Interaction Energy Using Python
- John Stone (Fri Oct 15 2010 - 13:57:51 CDT)
- David Huggins (Wed Oct 13 2010 - 08:48:12 CDT)
- John Stone (Tue Oct 12 2010 - 15:34:49 CDT)
- David Huggins (Wed Sep 29 2010 - 11:04:25 CDT)
Interactive MD driver/controller software no longer in beta
- Axel Kohlmeyer (Fri Nov 12 2010 - 09:41:59 CST)
Interactive Simulations, ligand size limits....
- Marc Baaden (Fri Apr 29 2005 - 04:01:27 CDT)
- John Stone (Thu Apr 28 2005 - 13:05:40 CDT)
- Brian Bennion (Thu Apr 28 2005 - 12:01:32 CDT)
- John Stone (Thu Apr 28 2005 - 10:08:17 CDT)
- Luis Rosales (Wed Apr 27 2005 - 21:29:51 CDT)
- John Stone (Thu Apr 21 2005 - 16:28:08 CDT)
- Luis Rosales (Wed Apr 20 2005 - 22:22:10 CDT)
- Luis Rosales (Wed Apr 20 2005 - 18:19:58 CDT)
- John Stone (Wed Apr 20 2005 - 16:12:20 CDT)
- Luis Rosales (Tue Apr 19 2005 - 22:51:52 CDT)
interatomic distances
- Justin Gullingsrud (Mon Dec 09 2002 - 14:33:43 CST)
- Vlad Cojocaru (Mon Dec 09 2002 - 07:59:30 CST)
Interface Propensity
- John Stone (Wed Sep 17 2008 - 21:53:13 CDT)
- bo baker (Wed Sep 17 2008 - 05:56:20 CDT)
intermediate states of a morph
- John Stone (Wed Nov 02 2005 - 14:17:44 CST)
- Yu Chen (Wed Nov 02 2005 - 10:20:24 CST)
International opportunity
- robert (Fri Feb 06 2009 - 11:25:07 CST)
Interpolation in internal space
- John Stone (Fri Oct 14 2005 - 15:55:29 CDT)
- Jerry Parks (Thu Oct 13 2005 - 10:21:32 CDT)
Interpreting a contact map
- Ian Stokes-Rees (Fri Aug 13 2010 - 16:11:29 CDT)
- John Stone (Thu Aug 12 2010 - 16:33:23 CDT)
- Ian Stokes-Rees (Thu Aug 12 2010 - 16:17:12 CDT)
Intersurf & MAC OSX 10.3
- John Stone (Thu Aug 25 2005 - 17:35:11 CDT)
- Sabuj Pattanayek (Tue Aug 23 2005 - 19:40:30 CDT)
- John Stone (Tue Aug 23 2005 - 15:45:28 CDT)
- William A. Shelton (Tue Aug 23 2005 - 15:28:16 CDT)
Intersurf and interface residues
- Axel Kohlmeyer (Thu Nov 29 2007 - 04:08:08 CST)
- Vincent Wolowski (Thu Nov 29 2007 - 03:30:37 CST)
- John Stone (Tue Nov 27 2007 - 13:53:24 CST)
- Vincent Wolowski (Tue Nov 27 2007 - 13:34:40 CST)
intersurf in vmd
- John Stone (Tue Oct 14 2008 - 16:44:01 CDT)
- Axel Kohlmeyer (Sat Oct 11 2008 - 18:44:10 CDT)
- BIN ZHANG (Sat Oct 11 2008 - 14:58:14 CDT)
Intersurf plugin
- Nuno R. L. Ferreira (Wed Mar 09 2005 - 13:07:01 CST)
- Nuno R. L. Ferreira (Wed Mar 09 2005 - 09:32:51 CST)
- Jérôme Hénin (Wed Mar 09 2005 - 08:21:45 CST)
- John Stone (Tue Mar 08 2005 - 10:59:25 CST)
- Jérôme Hénin (Mon Mar 07 2005 - 12:02:11 CST)
- Nuno R. L. Ferreira (Mon Mar 07 2005 - 07:40:35 CST)
- John Stone (Sun Mar 06 2005 - 21:35:26 CST)
- Nuno R. L. Ferreira (Sat Mar 05 2005 - 07:27:53 CST)
intersurf plugin missing in VMD 1.8.7 ?
- John Stone (Wed Mar 03 2010 - 11:24:15 CST)
- Bennion, Brian (Wed Mar 03 2010 - 11:11:49 CST)
Invalid command name "His" during Solvation
- John Stone (Fri Jun 25 2010 - 13:51:18 CDT)
- Michael LeVine (Thu Jun 17 2010 - 09:10:52 CDT)
invalid command name 'vmdcon'
- John Stone (Fri Feb 12 2010 - 00:21:01 CST)
- zubin mehta (Wed Feb 10 2010 - 04:41:01 CST)
invisible files in windows
- Ajasja LjubetiÄ (Thu Jun 16 2011 - 02:27:34 CDT)
- Denny Bromley (Wed Jun 15 2011 - 20:41:57 CDT)
- Michael Zimmermann (Wed Jun 15 2011 - 16:57:39 CDT)
- Axel Kohlmeyer (Wed Jun 15 2011 - 17:37:36 CDT)
Invitation to connect on LinkedIn
- Hideya Nakamura via LinkedIn (Wed Aug 31 2011 - 19:22:00 CDT)
- Iman Salehinia via LinkedIn (Tue Jun 14 2011 - 18:31:13 CDT)
- Lucas FernÃ¡ndez Seivane via LinkedIn (Fri Jun 03 2011 - 02:30:33 CDT)
- masoud Kazemi via LinkedIn (Wed Jun 01 2011 - 07:55:20 CDT)
- Ma Ming via LinkedIn (Sun Mar 27 2011 - 23:26:07 CDT)
- ram prasad via LinkedIn (Sun Mar 27 2011 - 12:38:16 CDT)
- Deepti Mishra (Mon Jul 19 2010 - 05:57:43 CDT)
ion 'channel axis'
- Adrian Kaats (Wed Mar 28 2007 - 15:55:17 CDT)
ion bead (residue based CG)
- Peter Freddolino (Wed Aug 18 2010 - 19:16:17 CDT)
- John Stone (Wed Aug 18 2010 - 15:06:39 CDT)
- Demet Akten (Mon Aug 09 2010 - 05:34:26 CDT)
ionic radii of sodium and chloride
- John Stone (Tue Jan 24 2012 - 15:23:04 CST)
- Cosseddu, Salvatore (Sun Jan 22 2012 - 15:27:30 CST)
- Zumot, Elia Nabil (Fri Jan 20 2012 - 19:55:53 CST)
- Axel Kohlmeyer (Fri Jan 20 2012 - 20:17:22 CST)
- John Stone (Fri Jan 20 2012 - 14:05:58 CST)
- Alexander Balaeff (Fri Jan 20 2012 - 13:59:55 CST)
- Zumot, Elia Nabil (Fri Jan 20 2012 - 10:57:19 CST)
- Axel Kohlmeyer (Fri Jan 20 2012 - 11:03:06 CST)
- Axel Kohlmeyer (Thu Jan 19 2012 - 21:12:49 CST)
- Zumot, Elia Nabil (Thu Jan 19 2012 - 20:12:38 CST)
Ionization
- Axel Kohlmeyer (Wed Dec 21 2011 - 08:25:16 CST)
- Yu Zhou (Tue Dec 20 2011 - 21:23:41 CST)
ionize (big, big, big system!)
- Alessandro Cembran (Mon Feb 12 2007 - 18:57:05 CST)
- L. Michel Espinoza-Fonseca (Mon Feb 12 2007 - 17:49:25 CST)
- Alessandro Cembran (Mon Feb 12 2007 - 11:37:20 CST)
- L. Michel Espinoza-Fonseca (Mon Feb 12 2007 - 11:19:57 CST)
- Peter Freddolino (Mon Feb 12 2007 - 11:07:50 CST)
- L. Michel Espinoza-Fonseca (Mon Feb 12 2007 - 10:58:32 CST)
ionize with VMD a TOP file
- Axel Kohlmeyer (Fri Aug 01 2008 - 09:28:58 CDT)
- rebeca_at_mmb.pcb.ub.es (Fri Aug 01 2008 - 07:14:40 CDT)
Ions conversion from atomic model to coarse grained model
- ÖÜÎÄ²ý (Wed Nov 10 2010 - 11:41:41 CST)
IR Spectra plugin
- Axel Kohlmeyer (Wed Sep 29 2010 - 12:03:13 CDT)
- Agarwal, Silvi (Wed Sep 29 2010 - 10:59:59 CDT)
IRIX6 build from CVS
- Bram Stolk (Tue Nov 08 2005 - 10:20:10 CST)
- Dan Wright (Tue Nov 08 2005 - 10:14:45 CST)
- Axel Kohlmeyer (Tue Nov 08 2005 - 07:01:51 CST)
- Bram Stolk (Tue Nov 08 2005 - 03:28:25 CST)
Is catdcd running on Windows?
- John Stone (Wed Oct 17 2007 - 21:15:39 CDT)
- Axel Kohlmeyer (Wed Oct 17 2007 - 06:34:45 CDT)
- Philipp Schön (Wed Oct 17 2007 - 03:45:54 CDT)
Is it possible to automatically label all bonds?
- Axel Kohlmeyer (Mon Oct 31 2011 - 08:10:08 CDT)
- Mike Wykes (Mon Oct 31 2011 - 07:09:55 CDT)
- John Stone (Thu Oct 27 2011 - 12:42:54 CDT)
- Axel Kohlmeyer (Thu Oct 27 2011 - 12:42:02 CDT)
- Mike Wykes (Thu Oct 27 2011 - 11:43:18 CDT)
is it possible to enable GPU rendering?
- John Stone (Wed Feb 01 2012 - 14:12:47 CST)
- Albert (Wed Feb 01 2012 - 14:04:02 CST)
is it possible to hide ONLY non-polar hydrogens?
- poker_at_physics.usyd.edu.au (Fri Jan 20 2012 - 16:41:14 CST)
- Ajasja LjubetiÄ (Fri Jan 20 2012 - 04:49:36 CST)
- Albert (Fri Jan 20 2012 - 03:54:32 CST)
Is it possible to load a part of a big xtc file faster...
- Bogdan Costescu (Wed Aug 18 2010 - 10:50:43 CDT)
- John Stone (Wed Aug 18 2010 - 10:00:08 CDT)
- Alberto Sergio Garay (Wed Aug 18 2010 - 09:44:56 CDT)
Is it possible to read a discover trajectory into VMD?
- John Stone (Mon May 12 2003 - 15:37:44 CDT)
- Knut Teigen (Sat May 10 2003 - 09:11:23 CDT)
Is it possible to save the position and angle of the camera for future VMD sessions?
- Axel Kohlmeyer (Fri Apr 13 2012 - 18:57:22 CDT)
- Andrew DeYoung (Fri Apr 13 2012 - 13:07:20 CDT)
Is it possible to select a sub-trajectory specificities.
- John Stone (Thu Mar 03 2005 - 15:20:59 CST)
- Stef (Thu Mar 03 2005 - 10:13:28 CST)
- John Stone (Thu Mar 03 2005 - 09:52:15 CST)
- Stef (Thu Mar 03 2005 - 04:37:05 CST)
- Eduard Schreiner (Thu Mar 03 2005 - 06:16:58 CST)
- Eduard Schreiner (Wed Mar 02 2005 - 05:18:30 CST)
- Stef (Tue Mar 01 2005 - 08:58:50 CST)
is it possible to skip frame when using bigdcd
- maria goranovic (Mon Sep 10 2007 - 04:17:44 CDT)
- John Stone (Fri Sep 07 2007 - 12:38:26 CDT)
- Axel Kohlmeyer (Fri Sep 07 2007 - 07:56:23 CDT)
- maria goranovic (Fri Sep 07 2007 - 03:47:05 CDT)
Is it possible to write CHARMM crd file from VMD?
- John Stone (Thu Mar 03 2005 - 15:27:01 CST)
- Leyla Celik (Tue Mar 01 2005 - 04:35:27 CST)
- John Stone (Thu Feb 24 2005 - 17:42:46 CST)
- Leyla Celik (Thu Feb 24 2005 - 13:31:03 CST)
Is it the bug of VMD1.87_partool?
- Aurum Bai (Wed Nov 18 2009 - 06:29:56 CST)
Is nvidia 3D Vision + quadro working in linux
- Axel Kohlmeyer (Tue Apr 27 2010 - 18:20:38 CDT)
- ben rodriguez (Tue Apr 27 2010 - 17:16:48 CDT)
Is position dependent color possible?
- Suman Chakrabarty (Tue Sep 02 2008 - 14:02:55 CDT)
- Suman Chakrabarty (Tue Sep 02 2008 - 12:17:59 CDT)
- John Stone (Tue Sep 02 2008 - 12:28:06 CDT)
- Suman Chakrabarty (Tue Sep 02 2008 - 13:27:02 CDT)
is possible to remove the waterbox before running VMD
- John Stone (Thu Mar 09 2006 - 10:40:39 CST)
- John Stone (Thu Mar 09 2006 - 10:39:27 CST)
- lily jin (Thu Mar 09 2006 - 10:34:02 CST)
Is there a way to add custormized representation method to VMD
- John Stone (Mon Feb 23 2009 - 15:04:06 CST)
- Yang, Shaorui (Sun Feb 22 2009 - 22:42:19 CST)
Is there a way to validate a structure
- Javaria Ahmed (Thu Nov 09 2006 - 07:41:10 CST)
Is there any script to analyze radius gyration, center of mass of namd traj file dcd?
- Giovanni Bellesia (Thu Jun 22 2006 - 16:19:33 CDT)
- John Stone (Thu Jun 22 2006 - 14:07:45 CDT)
- Youyong Li (Thu Jun 22 2006 - 08:23:47 CDT)
Is there any way to diagonalize a 3x3 matrix in VMD,..........
- Axel Kohlmeyer (Wed Jan 09 2008 - 14:54:33 CST)
- Sergio (Wed Jan 09 2008 - 13:18:05 CST)
Is there any way to stop the display of bonds for bonded atoms on opposite sides of a periodic boundary without unwrapping?
- Axel Kohlmeyer (Fri Mar 30 2012 - 08:13:09 CDT)
- Phelan Jr, Frederick R. Dr. (Thu Mar 29 2012 - 15:32:59 CDT)
- John Stone (Thu Mar 29 2012 - 14:44:28 CDT)
- Phelan Jr, Frederick R. Dr. (Thu Mar 29 2012 - 14:31:58 CDT)
is VMD compatible with NVIDIA 3D stereo drivers ?
- Kim, Kwiseon (Fri Mar 12 2004 - 11:01:29 CST)
- John Stone (Fri Mar 12 2004 - 10:56:37 CST)
- Kim, Kwiseon (Fri Mar 12 2004 - 09:50:07 CST)
- BETTLER Emmanuel (Fri Mar 12 2004 - 08:47:12 CST)
Is vmd working in float environment ?
- John Stone (Tue Sep 17 2002 - 09:37:14 CDT)
- Stéphane Teletchéa (Tue Sep 17 2002 - 08:20:13 CDT)
Iso-surfaces, VolumeSlices and tracing with VMD 1.8.2
- Axel Kohlmeyer (Mon May 24 2004 - 12:44:03 CDT)
- B.D Allen (Mon May 24 2004 - 10:09:22 CDT)
Isosurface and Fieldlines Not rendered in colour
- Burak Cankurtaran (Tue May 26 2009 - 21:17:36 CDT)
- John Stone (Tue May 26 2009 - 02:42:15 CDT)
- Axel Kohlmeyer (Tue May 26 2009 - 08:44:49 CDT)
- Burak Cankurtaran (Tue May 26 2009 - 00:15:44 CDT)
Isosurface and stepsize
- John Stone (Fri Jul 09 2004 - 13:09:09 CDT)
- Simon Latapie (Thu Jul 08 2004 - 04:30:34 CDT)
isosurface from pdb with beta field
- Peter Freddolino (Fri Mar 13 2009 - 20:26:06 CDT)
- Peter Varnai (Fri Mar 13 2009 - 16:09:33 CDT)
isosurface question
- John Stone (Wed Oct 29 2008 - 04:47:48 CDT)
- Raluca Mihaela ANDREI (Tue Oct 28 2008 - 12:48:14 CDT)
- John Stone (Tue Aug 10 2004 - 16:38:23 CDT)
- John Stone (Wed Jun 30 2004 - 13:04:29 CDT)
- John Stone (Mon Jun 28 2004 - 15:11:03 CDT)
- Randall Hall (Mon Jun 28 2004 - 10:14:20 CDT)
Isosurface rendering
- Avell Diroll (Thu Feb 22 2007 - 08:11:28 CST)
- John Stone (Wed Feb 21 2007 - 17:21:10 CST)
- Axel Kohlmeyer (Wed Feb 21 2007 - 11:54:12 CST)
- John Stone (Wed Feb 21 2007 - 11:45:22 CST)
- Axel Kohlmeyer (Wed Feb 21 2007 - 09:44:21 CST)
- Avell Diroll (Wed Feb 21 2007 - 06:42:05 CST)
- John Stone (Tue Feb 20 2007 - 12:53:21 CST)
- John Stone (Tue Feb 20 2007 - 10:44:36 CST)
- Avell Diroll (Tue Feb 20 2007 - 08:52:35 CST)
isosurface saving question
- YI Zhang (Tue Apr 07 2009 - 20:41:17 CDT)
Isosurface wraps in PME Electrostatics calc'n
- Irene Newhouse (Tue Mar 09 2010 - 15:56:22 CST)
- Axel Kohlmeyer (Tue Mar 09 2010 - 14:59:13 CST)
- John Stone (Tue Mar 09 2010 - 14:40:45 CST)
- Irene Newhouse (Tue Mar 09 2010 - 14:06:02 CST)
isplay script that displays a system in the original pbc cell
- John Stone (Mon Feb 27 2006 - 16:11:07 CST)
- snoze pa (Mon Feb 27 2006 - 11:30:08 CST)
- John Stone (Thu Feb 23 2006 - 13:50:49 CST)
- snoze pa (Thu Feb 23 2006 - 13:47:52 CST)
Issue with NAMD/VMD tutorial
- Matthew Bick (Mon May 30 2011 - 14:03:30 CDT)
- Axel Kohlmeyer (Mon May 30 2011 - 14:49:19 CDT)
- Axel Kohlmeyer (Mon May 30 2011 - 13:15:58 CDT)
- Matthew Bick (Mon May 30 2011 - 12:32:29 CDT)
Issue with wildcat 3 cards
- Mads Norregaard-Madsen (Mon Jul 01 2002 - 18:37:15 CDT)
- John Stone (Mon Jul 01 2002 - 14:34:08 CDT)
- Will Sheffler (Mon Jul 01 2002 - 14:13:09 CDT)
Issues with flickering display using VMD 1.8.7 displaying over X11 to remote Mac
- Rich Cook (Thu Dec 17 2009 - 12:52:54 CST)
- John Stone (Wed Dec 16 2009 - 23:55:15 CST)
- John Stone (Tue Dec 15 2009 - 15:20:01 CST)
- Rich Cook (Tue Dec 15 2009 - 15:03:07 CST)
Issues with Paratools and Gaussian
- JC Gumbart (Sun Jan 16 2011 - 17:12:10 CST)
- Ali, Rejwan (Wed Jan 12 2011 - 12:13:54 CST)
- Ali, Rejwan (Wed Jan 12 2011 - 11:57:16 CST)
- Ali, Rejwan (Wed Jan 12 2011 - 11:54:33 CST)
- Aaron Oakley (Tue Jan 11 2011 - 19:57:49 CST)
- Jacqueline Cawthray (Tue Jan 11 2011 - 17:09:37 CST)
- Ali, Rejwan (Tue Jan 11 2011 - 14:51:18 CST)
iTrajComp plugin.
- John Stone (Sun Apr 26 2009 - 23:09:29 CDT)
- Andres Morales N (Fri Apr 24 2009 - 22:23:45 CDT)
JMV
- John Stone (Mon May 14 2007 - 12:51:15 CDT)
- Samuel Flores (Sat May 12 2007 - 19:31:09 CDT)
- Robert Brunner (Wed Mar 31 2004 - 16:36:17 CST)
- Chris Upton (Wed Mar 31 2004 - 13:30:08 CST)
JMV Molecular Viewer Support within BioCoRE
- Robert Brunner (Wed Jul 03 2002 - 16:19:02 CDT)
Join tens of thousands of LUCKY winners today........
- Mel Weston (Thu Apr 10 2008 - 05:48:03 CDT)
Joystick on Linux
- Jyh-Shyong Ho (Mon Mar 07 2005 - 23:26:25 CST)
Joystick, VMD and vrpn on Linux
- Luis Rosales (Fri Oct 21 2005 - 18:46:37 CDT)
- John Stone (Thu Oct 20 2005 - 14:25:17 CDT)
- Luis Rosales (Wed Oct 19 2005 - 20:50:46 CDT)
joystick, win32 simple interface
- John Stone (Wed Jun 24 2009 - 15:50:18 CDT)
- Biff Forbush (Tue Jun 23 2009 - 18:32:57 CDT)
Joysticks for VMD on Windows XP
- John Stone (Mon Aug 12 2002 - 18:49:35 CDT)
- Jill Vickery (Mon Aug 12 2002 - 17:46:29 CDT)
just a test
- Vlad Cojocaru (Wed Sep 11 2002 - 08:40:47 CDT)
K-linked Ub, ACE patch, and autoPSF
- Al-Ali, Hassan (Tue Oct 05 2010 - 22:49:42 CDT)
- Al-Ali, Hassan (Tue Oct 05 2010 - 22:49:37 CDT)
- Al-Ali, Hassan (Tue Oct 05 2010 - 22:49:34 CDT)
k3b also launches vmd
- Francesco Pietra (Thu Nov 11 2010 - 02:10:36 CST)
- Francesco Pietra (Wed Nov 10 2010 - 13:33:43 CST)
- John Stone (Wed Nov 10 2010 - 10:47:01 CST)
- Francesco Pietra (Wed Nov 10 2010 - 03:05:03 CST)
keeping original coordinates in trajectory
- John Stone (Thu Mar 10 2005 - 10:56:41 CST)
- David A. Horita (Wed Mar 09 2005 - 14:27:28 CST)
Keyboard mapping incorrect for OS X
- Dan Wright (Thu Feb 17 2005 - 21:48:21 CST)
- John Stone (Thu Feb 17 2005 - 14:42:32 CST)
- Francis Reyes (Thu Feb 17 2005 - 13:50:00 CST)
keyboard-mouse-controlled view for VMDMovie plugin
- Kirby Vandivort (Tue Mar 09 2010 - 16:00:47 CST)
- Tibbitt, Jeffrey A. (Tue Mar 09 2010 - 10:27:36 CST)
keyframe animations
- John Stone (Tue Sep 23 2003 - 10:53:08 CDT)
- Ross J. Toedte (Tue Sep 23 2003 - 07:04:25 CDT)
keywords to access surface?
- John Stone (Mon Sep 19 2005 - 10:19:59 CDT)
- Daniel Strahs (Sun Sep 18 2005 - 18:39:00 CDT)
- John Stone (Fri Sep 16 2005 - 21:03:41 CDT)
- Dan Strahs (Fri Sep 16 2005 - 19:44:53 CDT)
kill source'd tcl script
- Axel Kohlmeyer (Wed Mar 28 2012 - 08:50:02 CDT)
- Mikkel Vestergaard (Wed Mar 28 2012 - 04:41:15 CDT)
- Philippe Bopp / temporary (Wed Mar 28 2012 - 03:37:12 CDT)
Knowing the euler angles from a particular orientation
- Nitin Bhardwaj (Tue Mar 29 2005 - 13:18:20 CST)
Knowing the euler angles from a particular orientation.
- Nitin Bhardwaj (Mon Mar 28 2005 - 18:41:25 CST)
known issues with measure hbonds
- JC Gumbart (Mon Dec 29 2008 - 09:31:59 CST)
- Harindar Keer (Thu Dec 18 2008 - 17:59:34 CST)
L/R lighting discrepancy
- John Stone (Thu Nov 10 2005 - 09:52:34 CST)
- Bram Stolk (Thu Nov 10 2005 - 06:48:47 CST)
- John Stone (Wed Nov 09 2005 - 11:32:57 CST)
- John Stone (Wed Nov 09 2005 - 10:36:41 CST)
- Bram Stolk (Wed Nov 09 2005 - 04:51:10 CST)
- John Stone (Tue Nov 08 2005 - 14:08:01 CST)
- Bram Stolk (Tue Nov 08 2005 - 14:01:25 CST)
- John Stone (Tue Nov 08 2005 - 10:55:57 CST)
- Bram Stolk (Tue Nov 08 2005 - 10:44:39 CST)
label all residues
- Peter Freddolino (Wed Aug 13 2008 - 10:29:20 CDT)
- Roman Petrenko (Wed Aug 13 2008 - 10:09:17 CDT)
Label on Movie
- Axel Kohlmeyer (Mon May 26 2008 - 14:06:52 CDT)
- Wei Huang (Mon May 26 2008 - 14:21:22 CDT)
- Axel Kohlmeyer (Mon May 26 2008 - 12:02:08 CDT)
- Wei Huang (Mon May 26 2008 - 10:26:30 CDT)
label options
- John Stone (Sun Sep 20 2009 - 15:35:25 CDT)
- Taufik Al-Sarraj (Thu Sep 17 2009 - 13:46:29 CDT)
Label using TCL
- John Stone (Mon Nov 22 2004 - 21:16:10 CST)
- Ekta Khurana (Mon Nov 22 2004 - 18:43:28 CST)
labeling a residue
- John Stone (Mon Jun 21 2004 - 13:59:02 CDT)
- Han Choe (Mon May 24 2004 - 03:57:42 CDT)
labeling bonds between two atoms
- Axel Kohlmeyer (Thu Jan 14 2010 - 17:17:35 CST)
- gurunath katagi (Thu Jan 14 2010 - 12:12:36 CST)
labeling for movie title
- John Stone (Mon Jun 04 2007 - 16:04:21 CDT)
- xiaoqin huang (Mon Jun 04 2007 - 13:21:54 CDT)
- xiaoqin huang (Mon Jun 04 2007 - 11:43:13 CDT)
Labelling Coordinates (not Atoms)
- Anthony Ivetac (Wed Jun 18 2008 - 21:32:03 CDT)
- Axel Kohlmeyer (Wed Jun 18 2008 - 18:43:57 CDT)
- Anthony Ivetac (Wed Jun 18 2008 - 17:52:09 CDT)
labels
- John Stone (Wed Mar 29 2006 - 10:54:12 CST)
- Nguyen Hoang Phuong (Wed Mar 29 2006 - 10:42:50 CST)
Labels 'springs' in labels form
- John Stone (Fri Nov 08 2002 - 17:33:21 CST)
- Stéphane Teletchéa (Wed Nov 06 2002 - 07:44:24 CST)
Labels (atom type, partial charge)
- John Stone (Thu Jul 17 2003 - 20:14:25 CDT)
- Bartek Dobrzelecki (Thu Jul 17 2003 - 06:00:22 CDT)
Labels not appearing with "load state"
- Ignacio Fernández Galván (Mon Sep 11 2006 - 02:28:23 CDT)
- John Stone (Sun Sep 10 2006 - 01:36:13 CDT)
- Ignacio Fernández Galván (Fri Sep 08 2006 - 07:59:07 CDT)
lags on VDW
- John Stone (Mon Dec 12 2005 - 10:44:09 CST)
- Aleksander Debinski (Mon Dec 12 2005 - 03:54:33 CST)
lammps and vmd
- Axel Kohlmeyer (Tue Jul 11 2006 - 11:21:19 CDT)
- H Q (Mon Jul 10 2006 - 22:04:20 CDT)
Lammps Output data format
- Axel Kohlmeyer (Tue Aug 30 2011 - 12:45:15 CDT)
- Axel Kohlmeyer (Tue Aug 30 2011 - 10:54:19 CDT)
- winardi, erik (Tue Aug 30 2011 - 10:44:49 CDT)
- Axel Kohlmeyer (Mon Aug 29 2011 - 13:20:02 CDT)
- winardi, erik (Mon Aug 29 2011 - 12:20:31 CDT)
LAMMPS reader
- John Stone (Wed Feb 23 2005 - 15:38:34 CST)
- Kooser, Ara S (Tue Feb 22 2005 - 10:58:25 CST)
LAMMPS Trajectory
- Axel Kohlmeyer (Sun May 23 2010 - 17:24:08 CDT)
- Moslem Sabouri (Sun May 23 2010 - 04:46:17 CDT)
- John Stone (Wed Oct 04 2006 - 00:19:00 CDT)
- Tamara Rogers (Fri Sep 29 2006 - 04:04:33 CDT)
LAMMPS Trajectory Bond Specification
- Axel Kohlmeyer (Thu Aug 14 2008 - 16:24:13 CDT)
- Nazanin Samadi (Thu Aug 14 2008 - 15:24:45 CDT)
- nicholas lee (Thu Aug 14 2008 - 14:25:07 CDT)
LAMMPS trajectory file
- Anna Ceguerra (Tue May 11 2010 - 03:32:52 CDT)
- Axel Kohlmeyer (Mon May 10 2010 - 23:25:23 CDT)
- Anna Ceguerra (Mon May 10 2010 - 21:12:28 CDT)
LAMMPS visualization
- Akiyama, Jotaro (Thu Nov 11 2004 - 18:27:15 CST)
- Jim Shepherd (Thu Nov 11 2004 - 17:30:26 CST)
- John Stone (Thu Nov 11 2004 - 15:13:14 CST)
- tsirk (Thu Nov 11 2004 - 15:02:42 CST)
LAMMPS Vizualization
- Frederick R. Phelan Jr. (Mon Mar 14 2005 - 17:26:48 CST)
- John Stone (Mon Mar 14 2005 - 15:14:04 CST)
- John Stone (Mon Mar 14 2005 - 13:33:36 CST)
- Frederick R. Phelan Jr. (Mon Mar 14 2005 - 10:21:52 CST)
lammpstrj file as pdb
- John Stone (Tue Oct 27 2009 - 12:06:56 CDT)
- John Stone (Tue Oct 27 2009 - 12:21:49 CDT)
- Christine Horejs (Tue Oct 27 2009 - 12:18:15 CDT)
- Christine Horejs (Tue Oct 27 2009 - 11:50:06 CDT)
LANG setting needs to be solved in next release....
- Bogdan Costescu (Thu May 20 2010 - 08:47:06 CDT)
- Rob (Thu May 20 2010 - 02:16:43 CDT)
- Bogdan Costescu (Wed May 19 2010 - 09:14:27 CDT)
- John Stone (Wed May 19 2010 - 08:41:47 CDT)
- Bogdan Costescu (Wed May 19 2010 - 08:34:38 CDT)
- John Stone (Tue May 18 2010 - 22:18:28 CDT)
- Rob (Tue May 18 2010 - 19:33:06 CDT)
Language definitions - \usepackage{listings}
- Nuno Loureiro Ferreira (Tue Jul 17 2007 - 10:26:20 CDT)
- Axel Kohlmeyer (Tue Jul 17 2007 - 07:11:54 CDT)
- Nuno Loureiro Ferreira (Tue Jul 17 2007 - 07:35:17 CDT)
- Nuno Loureiro Ferreira (Mon Jul 16 2007 - 12:19:59 CDT)
- John Stone (Mon Jul 16 2007 - 11:58:29 CDT)
- Nuno Loureiro Ferreira (Sat Jul 14 2007 - 10:47:57 CDT)
Large dcd file
- jouko_at_berkeley.edu (Tue Jan 06 2009 - 22:32:51 CST)
- Axel Kohlmeyer (Tue Jan 06 2009 - 19:04:46 CST)
- Axel Kohlmeyer (Tue Jan 06 2009 - 19:01:25 CST)
- Roman Petrenko (Tue Jan 06 2009 - 17:25:03 CST)
- jouko_at_berkeley.edu (Tue Jan 06 2009 - 16:31:46 CST)
large DCD file "appears to contain no timesteps"
- John Stone (Mon Jan 23 2006 - 13:28:49 CST)
- Linghao Zhong (Mon Jan 23 2006 - 13:15:47 CST)
large mdcrd files
- John Stone (Sun Aug 20 2006 - 14:09:50 CDT)
- Lubos Vrbka (Sun Aug 20 2006 - 11:27:19 CDT)
- alexandra.marques_at_fc.up.pt (Sun Aug 20 2006 - 07:56:30 CDT)
Large Molecule in CAVE Enviroment
- John Stone (Thu Jan 18 2007 - 01:59:41 CST)
- Christian Wohlschlager (Thu Jan 18 2007 - 01:35:06 CST)
Large positive non-integer charge
- John Stone (Tue May 17 2011 - 11:03:29 CDT)
- Grant Schauer (Thu May 12 2011 - 18:03:12 CDT)
- John Stone (Thu May 12 2011 - 16:06:32 CDT)
- David A. Horita (Thu May 12 2011 - 16:51:39 CDT)
- Axel Kohlmeyer (Thu May 12 2011 - 13:56:44 CDT)
- Grant Schauer (Thu May 12 2011 - 14:16:14 CDT)
- John Stone (Thu May 12 2011 - 14:00:30 CDT)
- Grant Schauer (Thu May 12 2011 - 13:16:46 CDT)
large selection
- Ioana Cozmuta (Wed Mar 15 2006 - 23:33:46 CST)
- John Stone (Wed Mar 15 2006 - 10:13:58 CST)
- Ioana Cozmuta (Tue Mar 14 2006 - 18:17:46 CST)
- John Stone (Tue Mar 14 2006 - 18:05:29 CST)
- Ioana Cozmuta (Tue Mar 14 2006 - 18:00:27 CST)
last call for early registrations for "Horizons2005"
- Vlad Cojocaru (Fri Jan 14 2005 - 07:19:00 CST)
latest beta nVidia driver for Windows looks good so far...
- Eugen Leitl (Tue Apr 04 2006 - 02:04:43 CDT)
- snoze pa (Tue Apr 04 2006 - 00:18:22 CDT)
- John Stone (Mon Apr 03 2006 - 20:00:50 CDT)
Latest Linux News?
- s.hogg_at_ic.ac.uk (Fri Jul 04 1997 - 13:58:40 CDT)
Latest list of VMD citations
- John Stone (Wed Jul 26 2006 - 15:58:09 CDT)
latest vmd
- Axel Kohlmeyer (Sat Feb 12 2011 - 19:06:57 CST)
- Francesco Oteri (Sat Feb 12 2011 - 18:23:52 CST)
Launching Tk Console
- Arneh Babakhani (Wed May 10 2006 - 19:00:57 CDT)
- Leonardo G. Trabuco (Wed May 10 2006 - 11:58:53 CDT)
- Arneh Babakhani (Wed May 10 2006 - 11:23:42 CDT)
Left Right eye stereo flip in Crystal Eyes
- John Stone (Thu Sep 15 2005 - 11:09:35 CDT)
- Chang, Christopher (Wed Sep 14 2005 - 15:18:37 CDT)
- Jill Vickery (Wed Sep 14 2005 - 14:04:52 CDT)
LES problem
- Irene Newhouse (Tue Jul 07 2009 - 00:25:20 CDT)
- Irene Newhouse (Tue Jul 07 2009 - 00:28:21 CDT)
lib/stride/README
- John Stone (Wed Mar 21 2012 - 11:13:32 CDT)
- Ajasja LjubetiÄ (Tue Mar 20 2012 - 02:39:29 CDT)
- Benjamin Kaduk (Mon Mar 19 2012 - 21:57:22 CDT)
libcprts.so.6 not found by VMD on RedHat EL3 (ia64).
- Bogdan Costescu (Mon Apr 10 2006 - 11:23:46 CDT)
- John Stone (Mon Apr 10 2006 - 10:20:52 CDT)
- guy.baudoux_at_gskbio.com (Mon Apr 10 2006 - 08:31:38 CDT)
libGLU.so missing?
- Axel Kohlmeyer (Fri May 18 2012 - 19:53:59 CDT)
- Fatemesadat Emami (Fri May 18 2012 - 18:55:21 CDT)
License question
- John Stone (Sat Jan 29 2011 - 19:18:20 CST)
- Gianluca Interlandi (Sat Jan 29 2011 - 16:19:27 CST)
ligand names
- Peter Freddolino (Fri Apr 03 2009 - 15:54:42 CDT)
- Katherine Parra (Fri Apr 03 2009 - 10:35:54 CDT)
ligand parametrization
- Jan Saam (Mon May 28 2007 - 18:51:57 CDT)
- John Stone (Mon May 28 2007 - 16:12:02 CDT)
- Karol Kaszuba (Mon May 28 2007 - 10:57:05 CDT)
limit on segment atom number in solvate and autoionize
- John Stone (Fri Mar 11 2005 - 15:13:12 CST)
- Philip Blood (Fri Mar 11 2005 - 13:44:45 CST)
- John Stone (Fri Mar 11 2005 - 13:38:23 CST)
- Philip Blood (Fri Mar 11 2005 - 13:18:22 CST)
- Philip Blood (Fri Mar 11 2005 - 11:52:41 CST)
lindex related question
- Axel Kohlmeyer (Fri Feb 25 2011 - 16:11:42 CST)
- Axel Kohlmeyer (Fri Feb 25 2011 - 15:49:48 CST)
- Pavan Ghatty (Fri Feb 25 2011 - 15:09:45 CST)
Link atoms
- snoze pa (Thu Jan 10 2008 - 10:45:28 CST)
- John Stone (Wed Jan 09 2008 - 22:51:46 CST)
- snoze pa (Wed Jan 09 2008 - 10:23:31 CST)
- snoze pa (Tue Jan 08 2008 - 18:10:11 CST)
Link between the electrostatic potential on the surface and the grid.dx generated by APBS
- John Stone (Mon Feb 02 2009 - 10:41:09 CST)
- Emeline Leproult (Mon Feb 02 2009 - 09:57:02 CST)
LINK or PACTH command in VMD
- snoze pa (Wed Sep 14 2011 - 15:56:13 CDT)
- Axel Kohlmeyer (Wed Sep 14 2011 - 13:38:40 CDT)
- snoze pa (Wed Sep 14 2011 - 11:48:53 CDT)
Link Patch?
- Al-Ali, Hassan (Fri Oct 08 2010 - 23:39:15 CDT)
Linkage problem when compiling fortran bindings for VMD molfile plugins
- John Stone (Fri Mar 18 2011 - 11:25:20 CDT)
- Susana Tomasio (Fri Mar 18 2011 - 11:21:56 CDT)
- Axel Kohlmeyer (Fri Mar 18 2011 - 11:14:31 CDT)
- John Stone (Fri Mar 18 2011 - 10:13:20 CDT)
- Susana Tomasio (Fri Mar 18 2011 - 08:55:33 CDT)
- Axel Kohlmeyer (Mon Mar 14 2011 - 18:08:53 CDT)
- Susana Tomasio (Mon Mar 14 2011 - 16:49:11 CDT)
- John Stone (Mon Mar 14 2011 - 16:22:58 CDT)
- Susana Tomasio (Mon Mar 14 2011 - 16:04:51 CDT)
- Axel Kohlmeyer (Mon Mar 14 2011 - 13:43:28 CDT)
- Susana Tomasio (Mon Mar 14 2011 - 11:52:49 CDT)
Linking to molfile_plugin libraries
- John Stone (Fri May 29 2009 - 13:24:30 CDT)
- David Tanner (Fri May 29 2009 - 13:30:24 CDT)
- David Tanner (Fri May 29 2009 - 13:02:59 CDT)
- David Tanner (Fri May 29 2009 - 13:18:28 CDT)
- John Stone (Fri May 29 2009 - 13:07:26 CDT)
Linking with FLTK 1.1.0b12
- Justin Gullingsrud (Tue Apr 09 2002 - 16:43:48 CDT)
- John Stone (Tue Apr 09 2002 - 16:01:55 CDT)
Linux compile error
- John Stone (Mon Jul 29 2002 - 13:46:08 CDT)
- Cesar Delgado (Fri Jul 26 2002 - 15:47:34 CDT)
linux graphics adapters?
- David E. Jones (Thu Jul 13 2000 - 14:43:06 CDT)
- John Stone (Thu Jul 13 2000 - 12:50:58 CDT)
- Michael Galloway (Thu Jul 13 2000 - 12:36:28 CDT)
- John Stone (Thu Jul 13 2000 - 10:10:48 CDT)
- Guy Coates (Thu Jul 13 2000 - 07:05:42 CDT)
- Michael Galloway (Thu Jul 13 2000 - 06:57:25 CDT)
linux graphics adapters?)
- Andrew Dalke (Sun Jul 16 2000 - 20:54:55 CDT)
- John Stone (Sun Jul 16 2000 - 14:06:08 CDT)
- Tim Freeman (Sun Jul 16 2000 - 12:05:02 CDT)
linux installation
- John Stone (Wed Nov 03 2004 - 10:02:40 CST)
- MERIC AYSE OVACIK (Wed Nov 03 2004 - 03:57:20 CST)
Linux installation issue
- Axel Kohlmeyer (Sat May 26 2007 - 15:32:59 CDT)
- Francesco Pietra (Sat May 26 2007 - 09:38:53 CDT)
linux issues
- Bennion, Brian (Mon Sep 12 2011 - 12:25:34 CDT)
- Axel Kohlmeyer (Mon Sep 12 2011 - 12:03:04 CDT)
- John Stone (Mon Sep 12 2011 - 11:22:06 CDT)
- Vivek Ranjan (Mon Sep 12 2011 - 11:01:25 CDT)
linux mesa binaries no longer available?
- John Stone (Tue Aug 26 2003 - 14:13:11 CDT)
- Lubos Vrbka (Tue Aug 26 2003 - 12:20:31 CDT)
Linux/Intel configuration for processing large trajectory file
- Johannes von Langen (Mon Jul 22 2002 - 05:26:19 CDT)
- Liu, Zhanwu (Fri Jul 19 2002 - 17:18:10 CDT)
Lipid area
- dimka (Mon Nov 07 2005 - 13:10:20 CST)
lipid bilayer thickness
- Axel Kohlmeyer (Sun Nov 06 2011 - 06:14:50 CST)
- Andrés Morales (Sun Nov 06 2011 - 00:07:36 CDT)
lipid definition
- Jim Phillips (Thu May 26 2005 - 13:11:08 CDT)
- John Stone (Thu May 26 2005 - 10:17:55 CDT)
- dimka (Wed May 25 2005 - 10:55:04 CDT)
lipid headgroup analysis
- syma (Mon Feb 26 2007 - 04:38:35 CST)
Lipid Membrane
- Axel Kohlmeyer (Mon Oct 12 2009 - 08:39:20 CDT)
- Ale Gomez (Sun Oct 11 2009 - 22:58:08 CDT)
Lipid order paramaeter script
- Ban Arn (Thu Apr 05 2012 - 04:35:52 CDT)
lipid order parameter
- John Stone (Tue Apr 17 2012 - 00:01:18 CDT)
- Ban Arn (Mon Apr 16 2012 - 05:16:31 CDT)
- Sebastian Stolzenberg (Sat Nov 07 2009 - 16:49:42 CST)
- Sebastian Stolzenberg (Sat Nov 07 2009 - 16:48:29 CST)
- Justin Gullingsrud (Fri Sep 23 2005 - 11:13:16 CDT)
- Nicolas Sapay (Wed Sep 21 2005 - 13:21:28 CDT)
- Justin Gullingsrud (Wed Sep 21 2005 - 12:26:37 CDT)
- Justin Gullingsrud (Wed Sep 21 2005 - 12:26:12 CDT)
- Nicolas Sapay (Wed Sep 21 2005 - 02:44:45 CDT)
- Saladino, Alex (Tue Sep 20 2005 - 16:21:30 CDT)
Lipid Order Parameter]
- Nicolas Sapay (Wed Sep 21 2005 - 13:29:06 CDT)
Lipid order parameters
- Ganesh Kamath (Mon Feb 27 2012 - 14:21:13 CST)
lipid Scd order parameter for a large bilayer (1440 lipids) with a changing bilayer normal (ie. bilayer undulations)
- Cesar Luis Avila (Wed Jun 06 2007 - 10:55:19 CDT)
- Cesar Luis Avila (Wed May 30 2007 - 20:36:09 CDT)
- Axel Kohlmeyer (Wed May 30 2007 - 14:14:08 CDT)
- Richard Swenson (Wed May 30 2007 - 14:15:13 CDT)
lipid tail selection
- Danielle Chandler (Thu Oct 09 2008 - 14:30:37 CDT)
- Axel Kohlmeyer (Mon Oct 06 2008 - 09:18:15 CDT)
- BIN ZHANG (Sun Oct 05 2008 - 01:16:45 CDT)
list in TCL
- Cesar Luis Avila (Mon Jun 04 2007 - 20:07:33 CDT)
- JC Gumbart (Mon Jun 04 2007 - 19:41:42 CDT)
- Giovanni Bellesia (Mon Jun 04 2007 - 19:39:37 CDT)
- John Stone (Mon Jun 04 2007 - 19:36:42 CDT)
- lily jin (Mon Jun 04 2007 - 18:47:16 CDT)
list of all the file type keywords for "mol load"?
- Axel Kohlmeyer (Mon Jan 05 2009 - 10:44:03 CST)
- Maxim Paliy (Mon Jan 05 2009 - 10:00:20 CST)
list of residue contacts
- Alison Grinthal (Wed Sep 23 2009 - 15:02:23 CDT)
Little problem with VolumeSlice
- John Stone (Thu Jun 03 2004 - 15:28:50 CDT)
- Simon Latapie (Thu Jun 03 2004 - 09:16:02 CDT)
Load
- Axel Kohlmeyer (Thu Aug 17 2006 - 14:12:56 CDT)
- John Stone (Thu Aug 17 2006 - 14:04:21 CDT)
- angel (Thu Aug 17 2006 - 13:14:06 CDT)
Load and change representation?
- Nicholas Musolino (Sun Apr 18 2010 - 12:13:12 CDT)
- Fatemesadat Emami (Sat Apr 17 2010 - 16:51:53 CDT)
- Fatemesadat Emami (Fri Apr 16 2010 - 23:37:32 CDT)
load in multiple files once
- Axel Kohlmeyer (Fri Feb 09 2007 - 16:30:00 CST)
- Hai-Jun Su (Fri Feb 09 2007 - 15:53:18 CST)
Load last frame of dcd on TKconsole (how?)
- Peter Freddolino (Sun Dec 31 2006 - 08:15:01 CST)
- hori koshii (Sat Dec 30 2006 - 19:20:00 CST)
load molecule made by amber7.
- Margaret Cheung (Tue Oct 15 2002 - 16:14:57 CDT)
- John Stone (Tue Oct 15 2002 - 15:52:00 CDT)
- Margaret Cheung (Fri Oct 11 2002 - 20:10:35 CDT)
load MSMS face file into VMD
- John Stone (Fri Aug 18 2006 - 16:24:55 CDT)
- Yongcheng Zhou (Fri Aug 18 2006 - 15:54:13 CDT)
load MSMS files into vmd
- John Stone (Wed Nov 12 2008 - 13:51:23 CST)
- John Stone (Wed Nov 12 2008 - 09:57:39 CST)
- Prevost Martine (Fri Nov 07 2008 - 09:29:34 CST)
load multiple CRD trajectories into a PDB file
- John Stone (Thu Feb 23 2006 - 11:42:24 CST)
- Thereza Soares (Thu Feb 23 2006 - 11:26:14 CST)
Load multiple files
- Bishop, Thomas C (Thu Feb 12 2009 - 11:18:57 CST)
- Andres Morales N (Thu Feb 12 2009 - 08:59:39 CST)
- John Stone (Thu Feb 12 2009 - 08:36:11 CST)
- bo baker (Wed Feb 11 2009 - 22:43:35 CST)
load multiple pdb files simultaneously
- John Stone (Wed May 28 2003 - 19:28:34 CDT)
- J. Zheng (Wed May 28 2003 - 18:29:13 CDT)
load of information on B factor as independent file
- Axel Kohlmeyer (Tue Dec 14 2010 - 02:33:54 CST)
- Ajasja LjubetiÄ (Tue Dec 14 2010 - 02:38:42 CST)
- JhonY. I. (Tue Dec 14 2010 - 00:55:12 CST)
load propka3.1 results error
- Albert (Tue Mar 13 2012 - 00:35:36 CDT)
- Albert (Mon Mar 12 2012 - 16:18:11 CDT)
- John Stone (Mon Mar 12 2012 - 16:43:21 CDT)
- John Stone (Mon Mar 12 2012 - 15:44:58 CDT)
- John Stone (Mon Mar 12 2012 - 15:36:25 CDT)
- Albert (Mon Mar 12 2012 - 15:40:12 CDT)
- Albert (Mon Mar 12 2012 - 15:24:37 CDT)
load state and alignments
- John Stone (Mon Jun 04 2007 - 14:41:21 CDT)
- Stern, Julie (Mon Jun 04 2007 - 10:56:36 CDT)
Load struture form memory
- Axel Kohlmeyer (Mon Oct 12 2009 - 08:35:22 CDT)
- Nuno Sousa Cerqueira (Mon Oct 12 2009 - 06:06:47 CDT)
load two or more molecuoles at one time
- Axel Kohlmeyer (Wed Nov 16 2005 - 16:21:35 CST)
- baogen duan (Tue Nov 15 2005 - 21:42:53 CST)
load-traj for three dimensions
- Stefan Franzen (Fri Oct 01 2010 - 13:35:55 CDT)
loading .gz trajectory files
- Axel Kohlmeyer (Tue Jul 20 2004 - 17:12:47 CDT)
- Vlad Cojocaru (Tue Jul 20 2004 - 12:56:38 CDT)
Loading .vel file in VMD
- Thomas C. Bishop (Fri Nov 21 2008 - 09:11:42 CST)
- Axel Kohlmeyer (Fri Nov 21 2008 - 03:45:39 CST)
- dipti lele (Thu Nov 20 2008 - 23:03:42 CST)
loading a new molecule without changing the view
- Axel Kohlmeyer (Fri Jan 06 2006 - 14:05:40 CST)
- Benjamin SCHWARZ (Fri Jan 06 2006 - 08:01:05 CST)
Loading a PDB file with different atom counts in models
- Adrian Kaats (Tue Mar 25 2008 - 07:41:38 CDT)
- John Stone (Mon Mar 24 2008 - 23:31:20 CDT)
- Adrian Kaats (Fri Mar 21 2008 - 09:19:35 CDT)
Loading a pdb traj in VMD 1.8.4 beta 6
- John Stone (Wed Dec 28 2005 - 14:38:11 CST)
- h9826299_at_hkusua.hku.hk (Fri Dec 23 2005 - 09:18:30 CST)
Loading a script
- John Stone (Mon Aug 02 2004 - 17:48:04 CDT)
- Prasad S Garimella (Mon Aug 02 2004 - 17:21:31 CDT)
loading a trajectory using bigdcd and job launched on a PBS server
- nsapay_at_ibcp.fr (Thu Feb 23 2006 - 16:59:07 CST)
- John Stone (Thu Feb 23 2006 - 16:31:10 CST)
- Nicolas Sapay (Thu Feb 23 2006 - 15:05:09 CST)
loading a trajectory where particles aren't conservd
- Axel Kohlmeyer (Wed Aug 31 2011 - 15:42:14 CDT)
- Chris Knorowski (Wed Aug 31 2011 - 15:35:04 CDT)
- Axel Kohlmeyer (Mon Aug 29 2011 - 17:26:22 CDT)
- Chris Knorowski (Mon Aug 29 2011 - 16:35:28 CDT)
loading amber file
- Axel Kohlmeyer (Wed Jun 01 2005 - 01:32:33 CDT)
- cbala_at_igib.res.in (Tue May 31 2005 - 01:05:45 CDT)
loading amber topology
- John Stone (Mon May 01 2006 - 14:10:18 CDT)
- L. Michel Espinoza-Fonseca (Mon May 01 2006 - 13:43:12 CDT)
loading compressed trajectory files
- Vlad Cojocaru (Wed Jul 21 2004 - 05:49:17 CDT)
loading crd files into VMD
- John Stone (Wed Oct 15 2003 - 17:00:12 CDT)
- Ioana Cozmuta (Wed Oct 15 2003 - 15:48:51 CDT)
- Madhuri Agashe (Wed Oct 15 2003 - 14:21:21 CDT)
Loading DCD files
- John Stone (Wed Jan 17 2007 - 14:06:00 CST)
- Vishal Kopardé (Wed Jan 17 2007 - 13:19:27 CST)
Loading DCD Frames in Python
- Cun Zhang (Sun Oct 03 2010 - 00:39:53 CDT)
- David Huggins (Sat Oct 02 2010 - 05:16:05 CDT)
Loading files all at once time to create movie
- John Stone (Mon Nov 21 2005 - 14:59:51 CST)
- Jindal Shah (Mon Nov 21 2005 - 12:43:48 CST)
Loading files into already-running version of VMD from command prompt
- Axel Kohlmeyer (Sat Aug 04 2007 - 16:04:31 CDT)
- Victor Albert (Sat Aug 04 2007 - 16:04:16 CDT)
Loading Gaussian Log File into Paratool
- Kovács, Sándor Ádám (Mon Mar 15 2010 - 16:54:39 CDT)
- Will Bricker (Sat Mar 13 2010 - 16:19:08 CST)
loading gzipped trajectories into vmd
- Axel Kohlmeyer (Tue Aug 29 2006 - 11:09:10 CDT)
- Bogdan Costescu (Tue Aug 29 2006 - 09:38:42 CDT)
- Vlad Cojocaru (Tue Aug 29 2006 - 08:24:03 CDT)
loading limits
- John Stone (Fri Nov 12 2004 - 10:36:00 CST)
- Stern, Julie (Fri Nov 12 2004 - 07:52:24 CST)
loading MD trajectories
- John Stone (Tue Nov 04 2003 - 13:18:33 CST)
- Luca Mollica (Mon Nov 03 2003 - 10:33:22 CST)
loading molecule from command line
- John Stone (Fri Jul 28 2000 - 15:11:02 CDT)
- Mauricio Carrillo Tripp (Fri Jul 28 2000 - 14:42:56 CDT)
loading molecules with increasing number of backbone atoms in VMD
- John Stone (Wed Jan 17 2007 - 12:05:37 CST)
- wurl (Tue Jan 16 2007 - 19:39:42 CST)
Loading multiple molecules in one step / "Apply changes automatically"
- Chang, Christopher (Fri Oct 21 2005 - 11:15:40 CDT)
- Michel Espinoza-Fonseca (Fri Oct 21 2005 - 10:46:46 CDT)
- John Stone (Fri Oct 21 2005 - 10:32:20 CDT)
- John Stone (Fri Oct 21 2005 - 10:28:00 CDT)
- Michel Espinoza-Fonseca (Fri Oct 21 2005 - 10:29:40 CDT)
- Björn Windshügel (Fri Oct 21 2005 - 09:54:59 CDT)
Loading multiple PDB files in VMD 1.8
- John Stone (Tue Dec 10 2002 - 18:02:39 CST)
Loading new molecules into VMD from an application
- John Stone (Wed Feb 20 2002 - 20:48:56 CST)
- Paul Grayson (Wed Feb 20 2002 - 19:59:54 CST)
- jen ramus (Wed Feb 20 2002 - 17:25:44 CST)
loading PDB+PSF
- John Stone (Tue Mar 16 2004 - 12:46:46 CST)
- Brian Bennion (Tue Mar 16 2004 - 11:00:18 CST)
- John Stone (Tue Mar 16 2004 - 09:55:55 CST)
- Kurt Smith (Tue Mar 16 2004 - 03:01:10 CST)
Loading Problem
- John Stone (Fri Jul 11 2008 - 10:54:39 CDT)
- Axel Kohlmeyer (Thu Jul 03 2008 - 12:28:18 CDT)
- hirdesh kumar (Thu Jul 03 2008 - 06:27:44 CDT)
loading python
- Axel Kohlmeyer (Fri Oct 10 2008 - 11:37:28 CDT)
- Ryan Pavlovicz (Thu Oct 09 2008 - 22:10:44 CDT)
- Axel Kohlmeyer (Thu Oct 09 2008 - 16:31:13 CDT)
- Ryan Pavlovicz (Thu Oct 09 2008 - 15:21:15 CDT)
loading saved state from command line
- Ajasja LjubetiÄ (Tue Jul 26 2011 - 01:47:56 CDT)
- Erik Nordgren (Mon Jul 25 2011 - 19:28:30 CDT)
- Erik Nordgren (Mon Jul 25 2011 - 19:12:03 CDT)
Loading structures into sequence alignment extension?
- Elijah Roberts (Mon Feb 13 2006 - 14:03:28 CST)
- Francis Reyes (Mon Feb 13 2006 - 11:31:40 CST)
loading trajectory file
- John Stone (Mon Aug 07 2006 - 11:46:34 CDT)
- Arturas Ziemys (Mon Aug 07 2006 - 11:38:34 CDT)
Loading trajectory frames - bug ? Tcl-equivalent ?
- John Stone (Fri Mar 15 2002 - 20:01:41 CST)
- Marc Baaden (Fri Mar 15 2002 - 06:27:54 CST)
Loading trajectory into Multiseq
- John Stone (Mon Oct 26 2009 - 10:22:21 CDT)
- stephane acoca (Fri Oct 23 2009 - 18:07:02 CDT)
loading trj file
- John Stone (Fri Sep 12 2003 - 15:16:48 CDT)
- Ioana Cozmuta (Fri Sep 12 2003 - 13:58:28 CDT)
- Brian Bennion (Fri Sep 12 2003 - 09:59:35 CDT)
- Ioana Cozmuta (Thu Sep 11 2003 - 18:06:47 CDT)
loading two dcd files in VMD
- Luis Gracia (Mon Apr 18 2005 - 13:47:19 CDT)
- Jorge Pikunic (Mon Apr 18 2005 - 10:40:51 CDT)
Loading up PDB files in absolute coordinates
- Brian Bennion (Fri Jun 22 2007 - 15:34:28 CDT)
- John Stone (Fri Jun 22 2007 - 15:01:26 CDT)
- Arneh Babakhani (Fri Jun 22 2007 - 15:04:24 CDT)
- John Stone (Fri Jun 22 2007 - 14:38:40 CDT)
- Arneh Babakhani (Fri Jun 22 2007 - 14:38:42 CDT)
- Giovanni Bellesia (Fri Jun 22 2007 - 14:24:11 CDT)
- Arneh Babakhani (Fri Jun 22 2007 - 14:26:12 CDT)
- John Stone (Fri Jun 22 2007 - 13:52:21 CDT)
- Arneh Babakhani (Fri Jun 22 2007 - 13:50:59 CDT)
- John Stone (Fri Jun 22 2007 - 13:24:30 CDT)
- Arneh Babakhani (Fri Jun 22 2007 - 13:10:06 CDT)
loading X-PLOR grids created with ptraj
- John Stone (Fri Jan 20 2006 - 10:05:01 CST)
- Vlad Cojocaru (Fri Jan 20 2006 - 03:59:35 CST)
Loading XYZ trajectory file
- John Stone (Tue Dec 10 2002 - 12:39:23 CST)
- #WONG CHEE HOW# (Mon Dec 09 2002 - 19:17:00 CST)
local packing density around a chemical group (say, a methyl group or a side chain)
- Leandro Martínez (Thu Apr 23 2009 - 12:22:38 CDT)
- Krishnan, Marimuthu (Thu Apr 23 2009 - 12:11:07 CDT)
- Axel Kohlmeyer (Thu Apr 23 2009 - 11:27:20 CDT)
- Krishnan, Marimuthu (Thu Apr 23 2009 - 10:15:44 CDT)
local urea concentration
- L. Michel Espinoza-Fonseca (Mon Jan 21 2008 - 12:05:32 CST)
- L. Michel Espinoza-Fonseca (Mon Jan 21 2008 - 11:17:14 CST)
Locating channel using hole
- John Stone (Wed Mar 07 2007 - 13:26:41 CST)
- daniel aguayo (Tue Mar 06 2007 - 14:28:24 CST)
- John Stone (Tue Mar 06 2007 - 12:43:42 CST)
- Subramanian Vaitheeswaran (Tue Mar 06 2007 - 12:11:23 CST)
locating or creating a .vmdsensors file for windows VMD
- John Stone (Wed Jul 14 2010 - 12:52:16 CDT)
- Jeffrey Sanders (Wed Jul 14 2010 - 12:42:02 CDT)
Locked files in Windows 7
- Ignacio FernÃ¡ndez GalvÃ¡n (Thu Sep 22 2011 - 11:48:23 CDT)
- Axel Kohlmeyer (Thu Sep 22 2011 - 07:49:47 CDT)
- Ajasja LjubetiÄ (Thu Sep 22 2011 - 07:17:55 CDT)
- Ignacio Fernández Galván (Thu Sep 22 2011 - 06:08:13 CDT)
Loevyou
- gumbart_at_ks.uiuc.edu (Thu Jul 23 2009 - 16:55:17 CDT)
Long atom types from CGenFF causing charge problems
- JC Gumbart (Tue Aug 09 2011 - 23:52:22 CDT)
- John Stone (Tue Aug 09 2011 - 22:19:02 CDT)
- JC Gumbart (Tue Aug 09 2011 - 17:42:32 CDT)
- Anna Whitney (Tue Aug 09 2011 - 16:01:09 CDT)
long bonds
- Axel Kohlmeyer (Wed Sep 10 2008 - 10:23:18 CDT)
- Marcelo Carignano (Wed Sep 10 2008 - 07:35:36 CDT)
Long file paths in Mac OS 10.5.3
- Kevin DeMarco (Wed Jun 04 2008 - 18:30:19 CDT)
- John Stone (Wed Jun 04 2008 - 16:52:10 CDT)
- Kevin DeMarco (Wed Jun 04 2008 - 16:43:32 CDT)
- Axel Kohlmeyer (Wed Jun 04 2008 - 16:17:25 CDT)
- John Stone (Wed Jun 04 2008 - 16:27:03 CDT)
- Kevin DeMarco (Wed Jun 04 2008 - 15:24:51 CDT)
Looking for assistance on vmd
- Dr. Zaheer-ul-Haq Qasmi (Sat Apr 17 2004 - 11:45:53 CDT)
Looking for nice example images for VMD 1.9.1 release page...
- John Stone (Fri Jan 27 2012 - 17:10:57 CST)
- Toni Giorgino (Fri Jan 27 2012 - 16:38:04 CST)
- John Stone (Wed Jan 25 2012 - 14:29:39 CST)
looking for VMD draw scripts.
- Jan Saam (Mon Sep 04 2006 - 13:20:08 CDT)
- Jan Saam (Fri Sep 01 2006 - 17:11:55 CDT)
- John Stone (Fri Sep 01 2006 - 17:03:37 CDT)
- Axel Kohlmeyer (Fri Sep 01 2006 - 16:52:51 CDT)
- Jan Saam (Fri Sep 01 2006 - 16:43:06 CDT)
- John Stone (Fri Sep 01 2006 - 16:07:38 CDT)
- Jan Saam (Fri Sep 01 2006 - 15:59:13 CDT)
- Axel Kohlmeyer (Fri Sep 01 2006 - 15:34:59 CDT)
Looking for x86 Mac testers...
- John Stone (Fri Feb 03 2006 - 19:55:57 CST)
Loop for
- Axel Kohlmeyer (Thu May 10 2012 - 22:06:41 CDT)
- Bennion, Brian (Thu May 10 2012 - 21:17:27 CDT)
- Axel Kohlmeyer (Thu May 10 2012 - 20:00:51 CDT)
- Andrés Morales (Thu May 10 2012 - 18:40:58 CDT)
loop in loop
- lily jin (Thu May 03 2007 - 18:41:04 CDT)
loop in loop - found it
- lily jin (Thu May 03 2007 - 18:49:47 CDT)
loosing color when rendering molecular surface in VMD
- Schreiner Eduard (Wed Jan 14 2009 - 20:58:22 CST)
- John Stone (Wed Jan 14 2009 - 20:50:03 CST)
- Michael Klein (Wed Jan 14 2009 - 20:17:23 CST)
Loss of VDW upon rendering with POV3
- John Stone (Wed Sep 08 2010 - 16:08:05 CDT)
- John Stone (Wed Sep 08 2010 - 14:26:11 CDT)
- Stefan Oliver (Wed Sep 08 2010 - 14:10:34 CDT)
Lovyeou
- gumbart_at_ks.uiuc.edu (Fri Jul 24 2009 - 09:31:56 CDT)
lowest energy structure
- Jorgen Simonsen (Mon Jul 19 2010 - 22:52:59 CDT)
Luxurious costume repl1ca w4tches at lowest prices
- Marvin Allen (Sun Aug 19 2007 - 08:30:41 CDT)
Ma Ming wants to stay in touch on LinkedIn
- Ma Ming via LinkedIn (Sun Mar 27 2011 - 23:21:55 CDT)
Mac and cmd line
- Jorgen Simonsen (Mon Aug 24 2009 - 17:50:49 CDT)
- JT (Mon Aug 24 2009 - 17:27:44 CDT)
- Ben Eisenbraun (Mon Aug 24 2009 - 15:50:58 CDT)
- Robert Brunner (Mon Aug 24 2009 - 15:02:20 CDT)
- Jorgen Simonsen (Mon Aug 24 2009 - 11:58:16 CDT)
Mac OS compilation? what could be going wrong?
- FX (Wed Apr 11 2012 - 14:25:47 CDT)
- John Stone (Wed Apr 11 2012 - 14:33:34 CDT)
- John Stone (Wed Apr 11 2012 - 14:15:59 CDT)
- FX (Wed Apr 11 2012 - 11:58:36 CDT)
- FX (Wed Apr 11 2012 - 11:57:08 CDT)
- John Stone (Wed Apr 11 2012 - 10:51:01 CDT)
- FX (Tue Apr 10 2012 - 03:50:32 CDT)
- FX (Mon Apr 09 2012 - 14:06:06 CDT)
- John Stone (Mon Apr 09 2012 - 10:11:17 CDT)
Mac OS compilation… what could be going wrongQ?=
- FX (Sun Apr 08 2012 - 12:03:42 CDT)
Mac OS X -dispdev options
- John Stone (Thu Sep 25 2003 - 11:25:57 CDT)
- Tobias Mandrup Johansen (Thu Sep 25 2003 - 04:12:27 CDT)
Mac OS X 64 bit Issues
- Andrew Fenley (Tue Nov 15 2011 - 17:47:41 CST)
- Andrew Fenley (Tue Nov 15 2011 - 15:00:56 CST)
Mac OS X problems with 1.8.3
- nicholas blake (Thu Mar 17 2005 - 13:27:03 CST)
- John Stone (Thu Mar 17 2005 - 09:55:26 CST)
- nicholas blake (Wed Mar 16 2005 - 17:25:10 CST)
Mac OSX crash with bus error/segmentation fault upon loading pdb/dcd
- James Irving (Mon Jun 30 2008 - 18:10:13 CDT)
- James Irving (Mon Jun 30 2008 - 20:03:44 CDT)
- Kevin DeMarco (Mon Jun 30 2008 - 18:50:24 CDT)
- Axel Kohlmeyer (Mon Jun 30 2008 - 13:17:20 CDT)
- James Irving (Sun Jun 29 2008 - 21:14:14 CDT)
Mac OSX TK console issues
- John Stone (Fri Jun 15 2007 - 15:42:52 CDT)
- Brian Kidd (Fri Jun 15 2007 - 14:57:16 CDT)
- Marc Baaden (Fri Jun 15 2007 - 09:21:51 CDT)
Mac OSX version
- John Stone (Tue Jun 25 2002 - 12:49:54 CDT)
- Chris Upton (Tue Jun 25 2002 - 12:18:47 CDT)
Mac Stereo 3D Displays & Equipment
- Jim Phillips (Wed Oct 19 2005 - 18:29:39 CDT)
Mac Titanium video card
- Christian Simon (Mon Jun 10 2002 - 07:45:42 CDT)
- John Stone (Sat Jun 08 2002 - 23:45:47 CDT)
- Christian Simon (Wed Jun 05 2002 - 17:06:20 CDT)
mac tk widgets
- John Stone (Mon Oct 12 2009 - 15:55:19 CDT)
- Nuno Sousa Cerqueira (Mon Oct 12 2009 - 15:58:03 CDT)
- Nuno Sousa Cerqueira (Sat Oct 10 2009 - 21:13:15 CDT)
Macbook and VMD Tk windows
- John Stone (Fri May 29 2009 - 09:17:20 CDT)
- Axel Kohlmeyer (Fri May 29 2009 - 08:07:21 CDT)
- madura_at_duq.edu (Fri May 29 2009 - 06:49:08 CDT)
MacBookPro and VMD version
- John Stone (Sun Apr 16 2006 - 02:14:50 CDT)
- Christoph Weber (Wed Apr 05 2006 - 14:10:08 CDT)
- John Stone (Tue Apr 04 2006 - 14:23:50 CDT)
- ivana adamovic (Tue Apr 04 2006 - 13:39:38 CDT)
MacOS 10.4 problems
- John Stone (Fri Oct 28 2005 - 09:43:13 CDT)
- Craig Maloney (Fri Oct 28 2005 - 00:13:25 CDT)
MacOS native version resource attach info...
- John Stone (Tue Jun 25 2002 - 11:02:08 CDT)
- tom keyes (Tue Jun 25 2002 - 10:44:22 CDT)
- John Stone (Mon Jun 24 2002 - 11:46:10 CDT)
MacOS X VMD 1.8 alpha 16 "bundle" test version...
- John Stone (Tue Jul 09 2002 - 14:05:23 CDT)
- Holger Frauenrath (Thu Jul 04 2002 - 11:11:11 CDT)
- MengJuei Hsieh (Wed Jul 03 2002 - 17:22:36 CDT)
- John Stone (Wed Jul 03 2002 - 14:47:59 CDT)
MacOS X window resizing fix...
- John Stone (Mon Nov 18 2002 - 00:21:53 CST)
MacOSX and the solvate package
- John Stone (Fri Oct 11 2002 - 22:48:14 CDT)
- Evan Thompson (Fri Oct 11 2002 - 20:02:59 CDT)
MacOSX bundle
- John Stone (Sat Jul 06 2002 - 18:08:10 CDT)
- Chris Upton (Sat Jul 06 2002 - 00:16:13 CDT)
MacOSX VMD errors.
- John Stone (Wed Jun 18 2003 - 10:55:19 CDT)
- Kelvin Chu (Wed Jun 18 2003 - 10:37:55 CDT)
MacOSX VMD errors. (solved)
- John Stone (Wed Jun 18 2003 - 12:57:00 CDT)
macros and variables
- John Stone (Thu Dec 01 2005 - 14:34:46 CST)
- Anthony Cruz (Thu Dec 01 2005 - 15:09:07 CST)
Maestro file export
- Jacob Poehlsgaard (Wed Jan 13 2010 - 09:15:03 CST)
- John Stone (Tue Jan 12 2010 - 16:46:07 CST)
- Jacob Poehlsgaard (Mon Jan 11 2010 - 03:21:22 CST)
Mail System Error - Returned Mail
- The Post Office (Wed Jun 20 2007 - 12:17:09 CDT)
Mailing List
- John Hondroulis (Wed Jan 08 1997 - 14:30:26 CST)
Mailing list problems
- Axel Kohlmeyer (Wed Aug 24 2011 - 15:57:59 CDT)
- John Stone (Wed Aug 24 2011 - 15:08:03 CDT)
- Anna (Wed Aug 24 2011 - 14:53:46 CDT)
- Anna (Wed Aug 24 2011 - 15:12:02 CDT)
maillist
- Justin Gullingsrud (Sun Jul 27 2003 - 23:58:21 CDT)
- Vlad Cojocaru (Sun Jul 27 2003 - 14:34:03 CDT)
Main menu not compiled?
- Pieter van 't Hof (Fri Sep 04 2009 - 09:00:56 CDT)
- John Stone (Fri Sep 04 2009 - 09:27:33 CDT)
Main window (button bars) does not start
- John Stone (Tue May 14 2002 - 10:11:44 CDT)
- Akemi Yagi (Tue May 14 2002 - 10:02:18 CDT)
main window missing?
- BIN ZHANG (Wed May 27 2009 - 16:36:07 CDT)
- John Stone (Wed May 27 2009 - 16:00:55 CDT)
- Axel Kohlmeyer (Wed May 27 2009 - 16:01:33 CDT)
- John Stone (Wed May 27 2009 - 15:30:21 CDT)
- BIN ZHANG (Wed May 27 2009 - 15:49:40 CDT)
- BIN ZHANG (Wed May 27 2009 - 15:17:40 CDT)
Main window off top of screen
- John Stone (Fri Feb 01 2002 - 11:02:17 CST)
- Keith Oxenrider (Fri Feb 01 2002 - 10:57:58 CST)
Maintaining original coordinates from PDB ?
- John Stone (Mon Nov 18 2002 - 09:54:24 CST)
- Marc Baaden (Sun Nov 17 2002 - 14:52:15 CST)
Make "Load all at once" the default? Adding representations?
- Heather Mayes (Wed May 02 2012 - 15:50:28 CDT)
- Axel Kohlmeyer (Tue May 01 2012 - 19:13:11 CDT)
- Heather Mayes (Tue May 01 2012 - 17:18:41 CDT)
- Axel Kohlmeyer (Tue May 01 2012 - 16:54:49 CDT)
- Heather Mayes (Tue May 01 2012 - 15:45:39 CDT)
make movie w/ VMD in SUSE environment
- Axel Kohlmeyer (Thu Jul 16 2009 - 11:40:03 CDT)
- Thomas C. Bishop (Thu Jul 16 2009 - 11:14:15 CDT)
- John Stone (Thu Jul 16 2009 - 11:27:08 CDT)
- Thomas C. Bishop (Thu Jul 16 2009 - 10:55:57 CDT)
- John Stone (Thu Jul 16 2009 - 11:00:29 CDT)
make movies with user-defined script
- lam nguyen (Tue Mar 13 2012 - 16:23:17 CDT)
- lam nguyen (Mon Mar 12 2012 - 20:37:19 CDT)
- John Stone (Mon Mar 12 2012 - 15:53:06 CDT)
- lam nguyen (Sun Mar 11 2012 - 18:55:38 CDT)
- John Stone (Fri Mar 09 2012 - 20:45:15 CST)
- lam nguyen (Fri Mar 09 2012 - 19:57:53 CST)
- Axel Kohlmeyer (Fri Mar 09 2012 - 19:35:32 CST)
- lam nguyen (Fri Mar 09 2012 - 18:34:18 CST)
- lam nguyen (Fri Mar 09 2012 - 17:31:35 CST)
- John Stone (Fri Mar 09 2012 - 16:27:43 CST)
- lam nguyen (Fri Mar 09 2012 - 12:10:05 CST)
- John Stone (Thu Mar 08 2012 - 12:12:06 CST)
- lam nguyen (Mon Mar 05 2012 - 12:49:00 CST)
Make sure girls notice your package
- petefred_at_ks.uiuc.edu (Sat Jul 04 2009 - 22:12:43 CDT)
makefile not generated from configure
- rossi_at_york.cuny.edu (Thu Aug 19 2004 - 14:12:29 CDT)
- Brian Bennion (Thu Aug 19 2004 - 12:24:13 CDT)
- rossi_at_york.cuny.edu (Wed Aug 18 2004 - 19:05:15 CDT)
makemovie errors (povray) -- VMD 1.8.3 on MacOS 10.3.8
- John Stone (Fri Apr 08 2005 - 14:38:30 CDT)
- Suckjoon JUN (Fri Apr 08 2005 - 04:17:52 CDT)
- John Stone (Thu Apr 07 2005 - 15:31:50 CDT)
- Suckjoon JUN (Thu Apr 07 2005 - 15:00:51 CDT)
making .psf file based on .gro or .pdb
- John Stone (Tue Feb 17 2009 - 19:04:22 CST)
- Hideya Nakamura (Tue Feb 17 2009 - 18:19:18 CST)
making a movie
- Axel Kohlmeyer (Tue Apr 26 2011 - 18:36:48 CDT)
- Moeed (Tue Apr 26 2011 - 17:58:06 CDT)
- John Stone (Tue Jun 20 2006 - 16:21:31 CDT)
- Alexandr Isayev (Tue Jun 20 2006 - 13:07:45 CDT)
- Karsten SUHRE (Tue Jun 20 2006 - 12:46:06 CDT)
- Joanne Hanna (Tue Jun 20 2006 - 09:38:06 CDT)
- Axel Kohlmeyer (Thu Oct 13 2005 - 10:49:25 CDT)
- Hyonseok Hwang (Thu Oct 13 2005 - 00:13:21 CDT)
making a movie of an unusual trajectory
- Edward Lyman (Fri Jul 16 2010 - 13:09:09 CDT)
- Axel Kohlmeyer (Fri Jul 16 2010 - 13:05:49 CDT)
- Axel Kohlmeyer (Fri Jul 16 2010 - 12:47:26 CDT)
- Edward Lyman (Fri Jul 16 2010 - 12:34:06 CDT)
- John Stone (Fri Jul 16 2010 - 12:23:01 CDT)
- Edward Lyman (Fri Jul 16 2010 - 11:54:47 CDT)
making a movie of trajectory file animation
- Barry Isralewitz (Thu Nov 08 2001 - 15:51:55 CST)
making a movie with a serie of pdb's
- Aitor Gonzalez (Fri Dec 08 2000 - 05:26:00 CST)
- John Stone (Thu Dec 07 2000 - 09:51:36 CST)
- Aitor Gonzalez (Thu Dec 07 2000 - 06:51:07 CST)
Making a selection from another selection
- Peter Freddolino (Tue Jul 17 2007 - 21:05:31 CDT)
- Peter Freddolino (Tue Jul 17 2007 - 20:16:27 CDT)
- Arneh Babakhani (Tue Jul 17 2007 - 20:41:29 CDT)
- Peter Freddolino (Tue Jul 17 2007 - 20:14:40 CDT)
- Arneh Babakhani (Tue Jul 17 2007 - 20:35:19 CDT)
- Arneh Babakhani (Tue Jul 17 2007 - 20:02:49 CDT)
Making a water-only sphere
- S.K. Ghosh (Mon Jun 23 2008 - 14:21:08 CDT)
making animations
- John Stone (Mon Jan 31 2005 - 13:21:05 CST)
- Jay Lee (Sat Jan 29 2005 - 17:57:05 CST)
making bonds myself
- JC Gumbart (Tue Oct 25 2005 - 22:34:13 CDT)
- Craig Maloney (Tue Oct 25 2005 - 20:05:04 CDT)
- JC Gumbart (Tue Oct 25 2005 - 19:32:08 CDT)
- Craig Maloney (Tue Oct 25 2005 - 19:16:32 CDT)
Making good trayectory movies
- John Stone (Tue Aug 30 2005 - 13:36:37 CDT)
- Leonardo Sepulveda Durán (Sun Aug 28 2005 - 18:44:52 CDT)
Making interactive 3-D PDF files using VMD 1.8.6 beta 7
- John Stone (Thu Feb 08 2007 - 18:11:53 CST)
making movie
- John Stone (Tue Aug 23 2011 - 10:36:05 CDT)
- Moeed (Tue Aug 23 2011 - 09:57:32 CDT)
- Axel Kohlmeyer (Tue Aug 23 2011 - 09:59:59 CDT)
- Axel Kohlmeyer (Tue Aug 23 2011 - 09:28:57 CDT)
- John Stone (Tue Aug 23 2011 - 08:59:36 CDT)
- Moeed (Tue Aug 23 2011 - 05:55:37 CDT)
- John Stone (Fri Aug 05 2011 - 16:13:28 CDT)
- Moeed (Wed Aug 03 2011 - 20:56:47 CDT)
making movie file
- John Stone (Mon Feb 05 2007 - 23:05:00 CST)
- Hai-Jun Su (Mon Feb 05 2007 - 22:41:11 CST)
making movie from GROMACS trajectory
- Arindam Ganguly (Thu Aug 17 2006 - 15:43:43 CDT)
- John Stone (Wed Aug 09 2006 - 20:27:25 CDT)
- Arindam Ganguly (Wed Aug 09 2006 - 18:05:36 CDT)
making movie on Mac OSX
- John Stone (Tue Nov 04 2003 - 13:16:25 CST)
- taeho.kim_at_utoronto.ca (Mon Nov 03 2003 - 21:52:13 CST)
making movie SGI
- John Stone (Fri Feb 21 2003 - 15:37:25 CST)
- Ioana Cozmuta (Fri Feb 21 2003 - 15:28:16 CST)
making movie with move on each frame...
- Ravinder Abrol (Thu Apr 13 2006 - 14:07:31 CDT)
- John Stone (Thu Apr 13 2006 - 10:00:51 CDT)
- Ravinder Abrol (Thu Apr 13 2006 - 06:32:50 CDT)
- John Stone (Mon Apr 10 2006 - 11:33:37 CDT)
- Ravinder Abrol (Fri Apr 07 2006 - 21:26:52 CDT)
making movie with snapshot - bogus images
- John Stone (Wed Sep 17 2003 - 16:20:20 CDT)
Making movies
- John Stone (Wed Jun 30 2004 - 13:29:10 CDT)
- balas002_at_bama.ua.edu (Wed Jun 30 2004 - 12:26:26 CDT)
- balas002_at_bama.ua.edu (Tue Jun 29 2004 - 14:21:22 CDT)
- John Stone (Tue Jun 29 2004 - 13:24:16 CDT)
- balas002_at_bama.ua.edu (Tue Jun 29 2004 - 10:37:40 CDT)
- balas002_at_bama.ua.edu (Mon Jun 28 2004 - 15:48:17 CDT)
- John Stone (Mon Jun 28 2004 - 15:32:30 CDT)
- balas002_at_bama.ua.edu (Mon Jun 28 2004 - 14:40:14 CDT)
- John Stone (Fri Jun 25 2004 - 17:54:33 CDT)
- balas002_at_bama.ua.edu (Wed Jun 23 2004 - 10:54:32 CDT)
- Karsten Suhre (Wed Jun 23 2004 - 03:07:31 CDT)
- John Stone (Tue Jun 22 2004 - 16:49:18 CDT)
- balas002_at_bama.ua.edu (Tue Jun 22 2004 - 16:15:27 CDT)
Making movies in VMD
- John Stone (Thu Dec 06 2007 - 12:34:37 CST)
- Axel Kohlmeyer (Wed Dec 05 2007 - 19:45:54 CST)
- Lili Peng (Wed Dec 05 2007 - 19:59:48 CST)
- Lili Peng (Wed Dec 05 2007 - 19:27:32 CST)
- Axel Kohlmeyer (Wed Dec 05 2007 - 19:16:40 CST)
- Lili Peng (Wed Dec 05 2007 - 18:32:44 CST)
Making movies in VMD (UNCLASSIFIED)
- John Stone (Thu Dec 06 2007 - 16:11:00 CST)
- Balu, Radhakrishnan (Cont, ARL/WMRD) (Thu Dec 06 2007 - 15:28:03 CST)
Making movies of trajectories
- John Stone (Thu Aug 30 2001 - 21:49:52 CDT)
- Troy Wymore (Thu Aug 23 2001 - 13:14:34 CDT)
Making only a subset of atoms transparent (or otherwise non-emphasized)
- Axel Kohlmeyer (Tue May 15 2012 - 13:38:17 CDT)
- Wang Yi (Tue May 15 2012 - 13:44:17 CDT)
- Andrew DeYoung (Tue May 15 2012 - 12:49:22 CDT)
making ps files
- Ioana Cozmuta (Fri Apr 09 2004 - 17:10:14 CDT)
- T Luchko (Fri Apr 09 2004 - 14:57:43 CDT)
- Jerry Ebalunode (Fri Apr 09 2004 - 11:19:08 CDT)
- Mike McCallum (Thu Apr 08 2004 - 17:40:16 CDT)
- John Stone (Thu Apr 08 2004 - 17:41:29 CDT)
- Ioana Cozmuta (Thu Apr 08 2004 - 14:55:34 CDT)
Making UIobjects
- Justin Gullingsrud (Thu Oct 25 2001 - 11:46:02 CDT)
- B. Bennion (Thu Oct 25 2001 - 11:13:27 CDT)
Making VMD movies
- John Stone (Mon Feb 10 2003 - 12:22:39 CST)
- Sanjeev B.S. (Mon Feb 10 2003 - 00:34:58 CST)
- John Stone (Sun Feb 09 2003 - 23:33:23 CST)
- Sanjeev B.S. (Sun Feb 09 2003 - 23:41:57 CST)
- John Stone (Sun Feb 09 2003 - 23:05:20 CST)
- Sanjeev B.S. (Sun Feb 09 2003 - 23:06:00 CST)
MANDRAKE and VMD
- Dmitry Kovalsky (Sun Jun 09 2002 - 03:35:45 CDT)
- John Stone (Thu Jun 06 2002 - 09:55:07 CDT)
- Dmitry Kovalsky (Thu Jun 06 2002 - 04:22:15 CDT)
manipulate DLPOLY HISTORY files
- John Stone (Mon Mar 06 2006 - 19:14:18 CST)
- Javier Sacristan (Fri Mar 03 2006 - 15:43:37 CST)
Manipulating dcd using script in VMD
- Axel Kohlmeyer (Tue Apr 28 2009 - 08:24:04 CDT)
- David Tanner (Tue Apr 28 2009 - 08:07:24 CDT)
- Eduardo Cruz-Chu (Tue Apr 28 2009 - 01:55:25 CDT)
- DimitryASuplatov (Tue Apr 28 2009 - 01:26:05 CDT)
Manipulation on loaded MSMS surface
- John Stone (Wed Aug 16 2006 - 23:26:54 CDT)
- Arturas Ziemys (Tue Aug 15 2006 - 16:19:18 CDT)
manually creating frames for VMD
- Peter Freddolino (Wed Mar 14 2007 - 20:46:49 CDT)
- yalini.pathy_at_yale.edu (Wed Mar 14 2007 - 17:11:58 CDT)
manually defining bonds, setting atom colors
- Axel Kohlmeyer (Thu Sep 14 2006 - 16:39:36 CDT)
- Robert Hoy (Thu Sep 14 2006 - 16:10:52 CDT)
Manunlly Assign Secondary Structure (May Not Be Realistic)
- John C. H. Chao (Fri Jul 03 2009 - 04:42:10 CDT)
- Axel Kohlmeyer (Thu Jul 02 2009 - 14:42:30 CDT)
- John C. H. Chao (Thu Jul 02 2009 - 06:00:07 CDT)
map files
- John Stone (Wed Sep 21 2005 - 13:22:07 CDT)
- Demetrios Braddock (Mon Sep 19 2005 - 19:41:39 CDT)
mapping delphi potential maps on surfaces
- John Stone (Thu Apr 08 2004 - 17:49:37 CDT)
- John Stone (Thu Apr 08 2004 - 16:48:43 CDT)
- Miguel Ortiz Lombardía (Thu Apr 08 2004 - 04:03:00 CDT)
Mapping electronic potential to surface
- Axel Kohlmeyer (Thu Feb 23 2006 - 22:47:20 CST)
- John Stone (Fri Feb 24 2006 - 13:08:51 CST)
- Xifang Wang (Thu Feb 23 2006 - 19:42:50 CST)
- John Stone (Thu Feb 23 2006 - 11:48:47 CST)
- Axel Kohlmeyer (Thu Feb 23 2006 - 00:55:53 CST)
- Xifang Wang (Wed Feb 22 2006 - 21:36:16 CST)
Maria Tziastoudi
- matziast_at_med.uth.gr (Sat Aug 13 2011 - 05:29:29 CDT)
- John Stone (Fri Aug 12 2011 - 09:39:51 CDT)
- matziast_at_med.uth.gr (Fri Aug 12 2011 - 04:29:38 CDT)
mass weighted rms fit
- Axel Kohlmeyer (Sun May 25 2008 - 11:20:56 CDT)
- Dong Xu (Sun May 25 2008 - 11:14:47 CDT)
Massive Inventory Clearance Sale on DTI 2D/3D 18.1" Flat Panel Displays!
- Mike Doolin (Fri Mar 07 2003 - 18:43:27 CST)
masure distance trajectory - delete variable
- Balazs Jojart (Sun Jan 17 2010 - 13:20:20 CST)
- Axel Kohlmeyer (Sun Jan 17 2010 - 11:54:03 CST)
- Balazs Jojart (Sun Jan 17 2010 - 05:11:07 CST)
Matching electron density map and PDB
- Keith Refson (Tue Dec 02 2003 - 03:43:41 CST)
- John Stone (Mon Dec 01 2003 - 17:27:09 CST)
- Keith Refson (Sat Nov 22 2003 - 11:16:30 CST)
Matrix based intermediate rotations
- Bogdan Costescu (Sat Sep 04 2010 - 05:35:41 CDT)
- Eduardo (Fri Sep 03 2010 - 11:16:26 CDT)
- John Stone (Fri Sep 03 2010 - 10:08:34 CDT)
- Bogdan Costescu (Fri Sep 03 2010 - 05:50:40 CDT)
Matrix in VMD
- Jeffery (Mon Jan 31 2005 - 14:59:52 CST)
- John Stone (Mon Jan 31 2005 - 14:18:17 CST)
- Jeffery (Mon Jan 31 2005 - 14:18:02 CST)
Matrix inverse
- Axel Kohlmeyer (Tue Sep 05 2006 - 18:39:22 CDT)
- Justin Gullingsrud (Tue Sep 05 2006 - 18:39:37 CDT)
- Neelanjana Sengupta (Tue Sep 05 2006 - 18:26:31 CDT)
- Axel Kohlmeyer (Tue Sep 05 2006 - 18:18:10 CDT)
- Jan Saam (Tue Sep 05 2006 - 18:13:58 CDT)
- Neelanjana Sengupta (Tue Sep 05 2006 - 17:38:23 CDT)
matrix transforms of volume objects
- John Stone (Fri Oct 14 2005 - 15:36:51 CDT)
- Dan Strahs (Thu Oct 13 2005 - 20:18:06 CDT)
Matrix: Warning: no convergence (0.00000000<390.26229858 after 1000 iterations).
- John Stone (Tue Nov 03 2009 - 16:18:43 CST)
- Bob Johnson (Tue Nov 03 2009 - 14:49:29 CST)
Max Characters in Writing Files
- Michael LeVine (Wed Nov 17 2010 - 15:36:49 CST)
Maximum length of an extended peptide?
- Axel Kohlmeyer (Tue Nov 15 2011 - 22:57:45 CST)
- Boris Steipe (Tue Nov 15 2011 - 22:29:42 CST)
- Anurag Sethi (Tue Nov 15 2011 - 21:57:44 CST)
- Aaron Oakley (Tue Nov 15 2011 - 20:58:20 CST)
- Chris Harrison (Tue Nov 15 2011 - 20:07:24 CST)
- Axel Kohlmeyer (Tue Nov 15 2011 - 19:55:57 CST)
- Aaron Oakley (Tue Nov 15 2011 - 17:53:14 CST)
Maximum number of atoms/bonds
- John Stone (Wed Jan 15 2003 - 10:33:03 CST)
- #WONG CHEE HOW# (Tue Jan 14 2003 - 19:04:54 CST)
maximum number of molecules
- John Stone (Fri Jan 13 2006 - 13:36:39 CST)
- James Rustad (Fri Jan 13 2006 - 13:27:06 CST)
Maximum numbers of atoms
- John Stone (Tue May 10 2005 - 22:44:16 CDT)
- John Stone (Wed Apr 06 2005 - 11:18:24 CDT)
- Nicolas CHARVIN (Wed Apr 06 2005 - 11:10:12 CDT)
- John Stone (Tue Apr 05 2005 - 17:41:22 CDT)
- John Stone (Tue Apr 05 2005 - 17:31:38 CDT)
- Luis Rosales (Mon Apr 04 2005 - 16:22:28 CDT)
- Nicolas CHARVIN (Mon Apr 04 2005 - 05:31:31 CDT)
- John Stone (Wed Mar 30 2005 - 16:08:25 CST)
- John Stone (Wed Mar 30 2005 - 10:03:16 CST)
- Axel Kohlmeyer (Wed Mar 30 2005 - 05:06:49 CST)
- Nicolas CHARVIN (Wed Mar 30 2005 - 01:54:37 CST)
maximum trajectory size?
- Axel Kohlmeyer (Thu Sep 16 2010 - 16:12:11 CDT)
- Murpholino Peligro (Thu Sep 16 2010 - 15:19:58 CDT)
- Joshua A. Anderson (Thu Sep 09 2010 - 06:50:43 CDT)
- John Stone (Wed Sep 08 2010 - 19:58:19 CDT)
- Patrick Burney (Wed Sep 08 2010 - 19:04:38 CDT)
Maximum velocities
- Eric H. Lee (Thu Jul 03 2008 - 16:17:54 CDT)
- Alejandro Ortega (Thu Jul 03 2008 - 16:03:13 CDT)
May 18th, Late abstract submission deadline for 3Dsig Structural Bioinformatics & Computational Biophysics
- 3D SIG (Wed May 11 2011 - 16:57:22 CDT)
May I use my own radii?
- John Stone (Thu Mar 17 2005 - 21:37:13 CST)
- Dallas Warren (Thu Mar 17 2005 - 19:00:58 CST)
- Chunhu Tan (Thu Mar 17 2005 - 16:17:49 CST)
md simulation of a protein and a ligand
- Robert Kretschmer (Mon Dec 18 2006 - 12:55:20 CST)
md trajectory: centering/h-bonb residence/coordination number
- Eduard Schreiner (Mon Aug 21 2006 - 12:09:34 CDT)
- John Stone (Mon Aug 21 2006 - 11:02:49 CDT)
- Ivan Degtyarenko (Mon Aug 21 2006 - 08:26:44 CDT)
MD: Water network analysis + visualization
- sanjeev_at_mbu.iisc.ernet.in (Tue Mar 22 2005 - 08:02:07 CST)
- Sanjeev B.S. (Fri Dec 17 2004 - 12:21:33 CST)
mdf molfile plugin reader atom_type bug
- Craig Knox (Tue Apr 19 2011 - 13:44:42 CDT)
- John Stone (Mon Apr 18 2011 - 16:14:00 CDT)
- Craig Knox (Mon Apr 18 2011 - 13:03:51 CDT)
MDFF plug-in
- A D (Fri Mar 05 2010 - 15:09:06 CST)
- John Stone (Fri Mar 05 2010 - 15:12:10 CST)
MDFF problem
- hamze rahimi (Tue Jul 19 2011 - 23:13:05 CDT)
MDFF Query: how to convert XPLOR style density maps to DX or SITUS format
- harish vashisth (Sat Jul 24 2010 - 11:12:27 CDT)
- Edelmiro Moman (Sat Jul 24 2010 - 03:50:58 CDT)
- harish vashisth (Fri Jul 23 2010 - 16:28:59 CDT)
MDFF sim Problem
- Leonardo Trabuco (Tue Jan 12 2010 - 17:00:00 CST)
- John Stone (Mon Oct 26 2009 - 10:04:16 CDT)
- Joshua Adelman (Sat Oct 24 2009 - 22:42:12 CDT)
- John Stone (Mon Oct 19 2009 - 15:27:43 CDT)
- Joshua Adelman (Sun Oct 18 2009 - 22:19:28 CDT)
- Leonardo Trabuco (Sat Oct 17 2009 - 15:26:03 CDT)
- Joshua Adelman (Fri Oct 16 2009 - 16:20:03 CDT)
Meadionize
- Mark Cunningham (Mon Feb 13 2012 - 09:15:18 CST)
- lecan (Sun Feb 12 2012 - 21:05:15 CST)
Mean atom position
- John Stone (Mon Mar 08 2010 - 14:34:04 CST)
- Katherine Parra (Mon Mar 08 2010 - 13:04:47 CST)
Mean value of el. potential ?
- Marek Maly (Thu May 26 2011 - 06:51:44 CDT)
- Walter Rocchia (Thu May 26 2011 - 06:02:03 CDT)
- Marek Maly (Thu May 26 2011 - 04:29:12 CDT)
- Axel Kohlmeyer (Wed May 25 2011 - 19:51:55 CDT)
- Marek Maly (Wed May 25 2011 - 17:59:42 CDT)
measure angle between three points in space
- Axel Kohlmeyer (Sun Sep 24 2006 - 10:40:06 CDT)
- Ivan Degtyarenko (Sun Sep 24 2006 - 04:17:52 CDT)
Measure atoms volume on VMD
- John Stone (Thu Feb 15 2007 - 23:02:17 CST)
- Cesar Luis Avila (Thu Feb 15 2007 - 15:27:53 CST)
measure avpos
- Luis Gracia (Mon May 15 2006 - 17:53:28 CDT)
- ziemys_at_ecr6.ohio-state.edu (Mon May 15 2006 - 14:43:28 CDT)
measure binding site SASA
- Dong Xu (Sun Feb 24 2008 - 12:38:49 CST)
measure bond length?
- Axel Kohlmeyer (Tue Sep 19 2006 - 12:03:23 CDT)
- Ivan Degtyarenko (Tue Sep 19 2006 - 11:32:05 CDT)
measure command problem
- Bernardo Sosa Padilla Araujo (Tue Mar 02 2010 - 14:15:42 CST)
- Edelmiro Moman (Tue Mar 02 2010 - 13:53:08 CST)
- Bernardo Sosa Padilla Araujo (Tue Mar 02 2010 - 12:33:57 CST)
- Bernardo Sosa Padilla Araujo (Mon Mar 01 2010 - 21:44:09 CST)
measure contacts script
- John Stone (Sat Jan 12 2008 - 00:23:09 CST)
- L. Michel Espinoza-Fonseca (Fri Jan 11 2008 - 05:57:10 CST)
measure dihedral and improper angles
- matziast_at_med.uth.gr (Tue Aug 09 2011 - 11:02:57 CDT)
measure dipole
- Ajasja LjubetiÄ (Wed Mar 30 2011 - 09:16:21 CDT)
- Donovan B.T. (Wed Mar 30 2011 - 08:16:53 CDT)
- Jernej Zidar (Tue Mar 29 2011 - 02:16:54 CDT)
- John Stone (Mon Mar 28 2011 - 15:52:54 CDT)
- Donovan B.T. (Mon Mar 28 2011 - 08:26:36 CDT)
- Axel Kohlmeyer (Fri Mar 25 2011 - 09:14:47 CDT)
- John Stone (Fri Mar 25 2011 - 09:11:24 CDT)
- Donovan B.T. (Fri Mar 25 2011 - 08:18:38 CDT)
- PaweÅ‚ KÄ™dzierski (Fri Mar 25 2011 - 02:55:54 CDT)
- Axel Kohlmeyer (Thu Mar 24 2011 - 13:53:10 CDT)
- Donovan B.T. (Thu Mar 24 2011 - 13:07:28 CDT)
measure distance
- Jian Zou (Wed Apr 23 2008 - 09:45:58 CDT)
- Axel Kohlmeyer (Wed Apr 23 2008 - 09:04:00 CDT)
- politr_at_huji.ac.il (Wed Apr 23 2008 - 09:02:41 CDT)
measure energy elect vs. NAMDenergy
- Axel Kohlmeyer (Tue Mar 08 2011 - 06:23:07 CST)
- Sebastian Maximilian Wilhelm (Tue Mar 08 2011 - 05:21:10 CST)
measure fit - wrong alignment
- Axel Kohlmeyer (Thu May 26 2011 - 13:17:43 CDT)
- Jérôme Hénin (Thu May 26 2011 - 07:43:12 CDT)
- Eduardo Oliveira (Thu May 26 2011 - 05:56:40 CDT)
measure fit alignment problems
- Luis Gracia (Fri Nov 19 2004 - 15:03:37 CST)
- John Stone (Fri Nov 19 2004 - 10:24:35 CST)
- Gavin Murphy (Thu Nov 18 2004 - 22:37:35 CST)
measure fit error??
- Justin Gullingsrud (Sat Oct 09 2004 - 00:41:49 CDT)
- Justin Gullingsrud (Fri Oct 08 2004 - 14:26:10 CDT)
- mdcooper (Fri Oct 08 2004 - 17:35:37 CDT)
- bora erdemli (Fri Oct 08 2004 - 12:29:22 CDT)
- mashaojie163 (Fri Oct 08 2004 - 07:28:20 CDT)
- mashaojie163 (Mon Sep 27 2004 - 23:12:22 CDT)
measure fit sufficient for alignment prior to RMSD?
- Paul R Brenner (Wed Oct 18 2006 - 10:08:49 CDT)
measure forces applied in VMD
- John Stone (Fri Jul 11 2008 - 10:48:11 CDT)
- S.K. Ghosh (Tue Jul 08 2008 - 20:11:19 CDT)
measure forces applied on VMD
- S.K. Ghosh (Mon Jul 07 2008 - 16:18:17 CDT)
measure gofr - how is g(r) normalised?
- Axel Kohlmeyer (Mon Aug 25 2008 - 15:14:35 CDT)
- Maxim Paliy (Mon Aug 25 2008 - 05:07:37 CDT)
measure gofr script
- Axel Kohlmeyer (Sat Apr 28 2012 - 12:33:09 CDT)
- Emiliano Ippoliti (Sat Apr 28 2012 - 11:17:00 CDT)
- Axel Kohlmeyer (Sat Apr 28 2012 - 10:11:58 CDT)
- Emiliano Ippoliti (Sat Apr 28 2012 - 08:51:58 CDT)
Measure gofr with large DCD files (Possibly use bigdcd ???)
- Axel Kohlmeyer (Fri May 23 2008 - 18:59:33 CDT)
- Christopher Gillespie (Fri May 23 2008 - 18:43:22 CDT)
measure Hbond
- Peter Freddolino (Thu May 03 2007 - 14:10:21 CDT)
- lily jin (Thu May 03 2007 - 14:06:19 CDT)
measure hbonds
- poker_at_physics.usyd.edu.au (Mon Dec 17 2007 - 19:03:50 CST)
- Narender Singh Maan (Mon Dec 17 2007 - 14:52:39 CST)
- lanhua (Fri May 04 2007 - 20:57:35 CDT)
- syma khalid (Fri Jan 28 2005 - 07:09:27 CST)
- bora erdemli (Fri Jan 28 2005 - 06:38:12 CST)
- YOLANDA SMALL (Thu Jan 27 2005 - 18:41:27 CST)
measure hbonds between protein and water - problem with periodic boundary conditions
- Olaf Lenz (Thu Apr 17 2008 - 05:19:52 CDT)
- Ana Vila Verde (Thu Apr 17 2008 - 05:54:50 CDT)
- Axel Kohlmeyer (Thu Apr 17 2008 - 04:52:29 CDT)
- Olaf Lenz (Thu Apr 17 2008 - 04:32:34 CDT)
- Ana Vila Verde (Thu Apr 17 2008 - 02:54:08 CDT)
Measure hbonds equivalent in Python interface?
- Chang, Christopher (Wed Sep 10 2008 - 18:52:43 CDT)
measure hbonds problem
- politr_at_huji.ac.il (Sun Jun 01 2008 - 06:27:48 CDT)
- Peter Freddolino (Fri May 30 2008 - 15:00:52 CDT)
- politr_at_huji.ac.il (Fri May 30 2008 - 10:59:28 CDT)
measure hbonds question
- John Stone (Fri Jan 20 2006 - 16:43:20 CST)
- Mgr. Lubos Vrbka (Fri Jan 20 2006 - 16:05:16 CST)
- John Stone (Fri Jan 20 2006 - 15:31:28 CST)
- Mgr. Lubos Vrbka (Fri Jan 20 2006 - 15:19:54 CST)
- John Stone (Fri Jan 20 2006 - 15:02:37 CST)
- Mgr. Lubos Vrbka (Wed Jan 18 2006 - 10:13:29 CST)
measure imprp - input order of atoms
- Jan Saam (Mon Aug 27 2007 - 03:30:41 CDT)
- Johannes Müllegger (Fri Aug 24 2007 - 14:51:00 CDT)
Measure Radius of gyration
- Eduard Schreiner (Mon Nov 15 2010 - 13:47:16 CST)
- David Wedner (Mon Nov 15 2010 - 12:31:15 CST)
measure rmsf
- John Stone (Fri Jul 10 2009 - 13:31:54 CDT)
- Alison Grinthal (Fri Jul 10 2009 - 13:10:14 CDT)
- John Stone (Fri Jul 10 2009 - 10:42:33 CDT)
- Alison Grinthal (Fri Jul 10 2009 - 08:31:26 CDT)
measure rmsf - command (step argument)
- Axel Kohlmeyer (Wed Jan 07 2009 - 10:44:18 CST)
- Nadja Lederer (Wed Jan 07 2009 - 05:20:42 CST)
measure sasa
- John Stone (Thu Mar 01 2012 - 10:06:21 CST)
- Aaron Oakley (Wed Feb 29 2012 - 17:50:08 CST)
- L. Michel Espinoza-Fonseca (Sun Feb 10 2008 - 17:48:12 CST)
measure sasa gives different results on different platforms
- Jufang Shan (Thu May 08 2008 - 11:26:38 CDT)
- John Stone (Thu May 08 2008 - 11:39:07 CDT)
- John Stone (Wed May 07 2008 - 23:08:22 CDT)
- Jufang Shan (Wed May 07 2008 - 23:04:19 CDT)
- John Stone (Wed May 07 2008 - 16:59:55 CDT)
- Jufang Shan (Wed May 07 2008 - 15:52:47 CDT)
measure the distance between center of molecules
- Taufik Al-Sarraj (Tue Dec 23 2008 - 11:06:22 CST)
- John Stone (Tue Dec 23 2008 - 11:12:38 CST)
measure XYZ dimensions of a system
- Axel Kohlmeyer (Wed Jan 24 2007 - 13:52:43 CST)
- Akshay Patny (Wed Jan 24 2007 - 12:47:47 CST)
- Axel Kohlmeyer (Wed Jan 24 2007 - 12:13:42 CST)
- Akshay Patny (Wed Jan 24 2007 - 10:47:00 CST)
Measuring cluster size
- Madhavan Poyyapakkam (Wed Nov 22 2000 - 20:46:59 CST)
Measuring distance during a trajectory
- John Stone (Wed Oct 19 2005 - 16:55:17 CDT)
- Per Jr. Greisen (Tue Oct 18 2005 - 14:59:42 CDT)
Measuring distances between two sets of atoms in a dcd file
- John Stone (Tue Oct 28 2003 - 14:18:12 CST)
- Rudesh Toofanny (Tue Oct 28 2003 - 10:32:51 CST)
measuring distances in vmd tkon
- L. Michel Espinoza-Fonseca (Thu Mar 20 2008 - 13:35:33 CDT)
- L. Michel Espinoza-Fonseca (Thu Mar 20 2008 - 13:46:21 CDT)
- Simpson, Lisa M (Thu Mar 20 2008 - 12:38:36 CDT)
- Ahmet Bakan (Thu May 06 2004 - 17:45:21 CDT)
- Jerry Ebalunode (Thu May 06 2004 - 15:18:00 CDT)
Measuring fit exclusively in 1 plane
- John Stone (Thu May 01 2008 - 21:54:14 CDT)
- Benjamin Hall (Thu May 01 2008 - 04:59:04 CDT)
measuring h-bond distances
- Axel Kohlmeyer (Sun Sep 12 2004 - 06:18:27 CDT)
- Alicia Hopkins (Sat Sep 11 2004 - 12:01:58 CDT)
measuring h-bonds
- Marcos Sotomayor (Sun Sep 19 2004 - 14:08:04 CDT)
- Alicia Hopkins (Sun Sep 19 2004 - 08:42:12 CDT)
- Axel Kohlmeyer (Fri Sep 17 2004 - 01:16:45 CDT)
- Alicia Hopkins (Thu Sep 16 2004 - 09:24:33 CDT)
Measuring hbonds between selections from different molecules
- Axel Kohlmeyer (Tue Jun 05 2007 - 20:09:49 CDT)
- Arneh Babakhani (Tue Jun 05 2007 - 20:57:11 CDT)
- Axel Kohlmeyer (Tue Jun 05 2007 - 19:41:24 CDT)
- Arneh Babakhani (Tue Jun 05 2007 - 20:13:15 CDT)
measuring rotation of protein about an axis
- Blake Charlebois (Tue Jul 19 2005 - 11:28:59 CDT)
- Vani Krishna (Tue Jul 19 2005 - 10:07:37 CDT)
Measuring specific distances over a trajectory
- John Stone (Wed Mar 14 2007 - 16:56:18 CDT)
- Patrick Wintrode (Wed Mar 14 2007 - 16:06:30 CDT)
measuring the orientation of a small a-helix
- Raul Araya (Wed Apr 06 2011 - 16:23:29 CDT)
measuring torsion angles
- Christoph Schneider (Mon Jun 29 1998 - 03:08:48 CDT)
Membrane and box with PBC
- Ricardo Soares (Thu Feb 16 2012 - 12:28:06 CST)
membrane builder
- Axel Kohlmeyer (Tue May 13 2008 - 17:31:47 CDT)
- ffavela_at_fis.cinvestav.mx (Tue May 13 2008 - 17:30:57 CDT)
Membrane builder ?'s
- John Stone (Tue Feb 24 2009 - 00:06:40 CST)
- Christopher Hartshorn (Mon Feb 23 2009 - 13:09:16 CST)
membrane loading
- John Stone (Wed Apr 05 2006 - 17:36:06 CDT)
- xiaoqin huang (Wed Apr 05 2006 - 17:05:39 CDT)
- John Stone (Wed Apr 05 2006 - 14:32:38 CDT)
- xiaoqin huang (Wed Apr 05 2006 - 14:25:12 CDT)
membrane modeling
- Eugene Leitl (Sat Mar 25 2000 - 19:03:56 CST)
- Peter Tieleman (Sat Mar 25 2000 - 18:43:50 CST)
- Kemikal Kid Kolby (Sat Mar 25 2000 - 18:17:52 CST)
membrane plugin (IRIX version)
- John Stone (Wed Jun 07 2006 - 14:42:43 CDT)
- lothar esser (Wed Jun 07 2006 - 14:26:28 CDT)
Membrane plugin error?
- rwiese_at_unr.edu (Wed Jun 08 2005 - 14:04:49 CDT)
- John Stone (Wed Jun 08 2005 - 13:24:00 CDT)
- rwiese_at_unr.edu (Wed Jun 08 2005 - 12:37:14 CDT)
Membrane PlugIn issue
- Akshay Patny (Sat Sep 16 2006 - 14:20:23 CDT)
membrane plugin | lipid structures
- JC Gumbart (Sun Jul 27 2008 - 23:36:37 CDT)
- Jufang Shan (Fri Jul 25 2008 - 11:50:18 CDT)
Membrane POPC
- Francesco Pietra (Sat Dec 01 2007 - 17:07:50 CST)
Membrane Protein Tutorial
- John Stone (Mon Dec 06 2010 - 09:31:05 CST)
- Bharat Kumar (Sun Dec 05 2010 - 22:40:28 CST)
- Bharat Kumar (Sat Dec 04 2010 - 01:42:49 CST)
Membrane Proteins Tutorial
- Marcos Sotomayor (Fri Feb 13 2009 - 16:25:15 CST)
membrane_problem
- lara lara (Wed Oct 06 2010 - 00:29:39 CDT)
memorry problem
- Axel Kohlmeyer (Fri May 02 2008 - 15:04:02 CDT)
- Axel Kohlmeyer (Wed Apr 23 2008 - 06:58:42 CDT)
- politr_at_huji.ac.il (Wed Apr 23 2008 - 06:48:53 CDT)
memory allocation issue
- Edward Lyman (Wed May 06 2009 - 13:37:04 CDT)
- Leonardo Trabuco (Wed May 06 2009 - 13:48:12 CDT)
Memory allocation problem
- Axel Kohlmeyer (Mon Jun 15 2009 - 10:00:02 CDT)
- Peter Freddolino (Mon Jun 15 2009 - 09:22:49 CDT)
- kumar prashanth (Mon Jun 15 2009 - 04:06:49 CDT)
memory issues
- John Stone (Mon Nov 02 2009 - 13:50:12 CST)
- Paymon Pirzadeh (Mon Nov 02 2009 - 12:02:14 CST)
memory leak 1.8.7 and 1.9b1
- Axel Kohlmeyer (Mon Feb 21 2011 - 10:10:41 CST)
- John Stone (Mon Feb 21 2011 - 09:48:08 CST)
- Tim Meyer (Mon Feb 21 2011 - 09:13:18 CST)
memory leak found
- Axel Kohlmeyer (Tue Dec 02 2008 - 12:58:25 CST)
- Ondrej Marsalek (Tue Dec 02 2008 - 12:40:26 CST)
- Ondrej Marsalek (Tue Dec 02 2008 - 12:19:51 CST)
- Axel Kohlmeyer (Tue Dec 02 2008 - 11:23:28 CST)
- John Stone (Tue Dec 02 2008 - 09:14:22 CST)
- Ondrej Marsalek (Tue Dec 02 2008 - 09:08:09 CST)
Memory leak using "moveby" command inside a loop
- Justin Gullingsrud (Thu Apr 15 2004 - 13:22:08 CDT)
- Artem Mamonov (Wed Apr 14 2004 - 21:34:20 CDT)
Memory leak with "mol modselect" and index
- John Stone (Sun Oct 17 2010 - 15:52:47 CDT)
- TRINH Minh Hieu (Sun Oct 17 2010 - 13:43:40 CDT)
- Axel Kohlmeyer (Sun Oct 17 2010 - 13:29:22 CDT)
- TRINH Minh Hieu (Sat Oct 16 2010 - 20:11:16 CDT)
memory problem p4_Globmemsize
- John Stone (Wed Jun 08 2005 - 16:05:04 CDT)
- shgnwgn_at_eden.rutgers.edu (Wed Jun 08 2005 - 14:50:48 CDT)
Memory Problem with tcl/tk script...
- Axel Kohlmeyer (Tue Jun 02 2009 - 09:27:22 CDT)
- Alberto Sergio Garay (Tue Jun 02 2009 - 07:25:16 CDT)
Memory Problem with tcl/tk script...(2)
- Axel Kohlmeyer (Wed Jun 03 2009 - 13:57:40 CDT)
- Robert Brunner (Wed Jun 03 2009 - 13:48:49 CDT)
- Alberto Sergio Garay (Wed Jun 03 2009 - 12:54:53 CDT)
Memory Problem with tcl/tk script...(3)
- Alberto Sergio Garay (Wed Jun 03 2009 - 14:17:07 CDT)
Memory Problem with tcl/tk script...(Solved!)
- Alberto Sergio Garay (Thu Jun 04 2009 - 07:08:19 CDT)
memory problems
- Justin Gullingsrud (Sat Aug 25 2001 - 21:51:25 CDT)
- Dr. Paul Fons (Sat Aug 25 2001 - 19:54:48 CDT)
Memory problems using the "move" command inside a loop!
- John Stone (Fri May 02 2003 - 15:30:39 CDT)
- Joe Huang (Fri May 02 2003 - 16:23:54 CDT)
- Justin Gullingsrud (Wed Apr 30 2003 - 17:56:32 CDT)
- John Stone (Wed Apr 30 2003 - 10:05:19 CDT)
- Thomas Hedegaard Pedersen (Wed Apr 30 2003 - 09:28:01 CDT)
Memory problems with Multiseq
- John Stone (Thu Mar 08 2007 - 17:38:50 CST)
- Marcelo Puiatti (Thu Mar 08 2007 - 17:21:27 CST)
Memory problems with TCL scripts in VMD.
- Justin Gullingsrud (Fri Mar 21 2003 - 17:53:51 CST)
- John Stone (Fri Mar 21 2003 - 16:36:02 CST)
- Joe Huang (Thu Mar 20 2003 - 13:02:48 CST)
Memory problems with XP
- John Stone (Mon Apr 21 2003 - 11:31:59 CDT)
Memory used by VMD is much less than installed
- PaweÅ‚ KÄ™dzierski (Wed Mar 07 2012 - 08:15:54 CST)
- Ajasja LjubetiÄ (Wed Mar 07 2012 - 07:11:22 CST)
- Axel Kohlmeyer (Wed Mar 07 2012 - 06:34:44 CST)
- Meyer-Almes, Franz-Josef, Prof. Dr. (Wed Mar 07 2012 - 05:03:08 CST)
Menu is missing?
- John Stone (Tue Sep 24 2002 - 11:09:51 CDT)
- Jeroen Akershoek (Tue Sep 24 2002 - 03:31:16 CDT)
menus unresponsive in ubuntu 10.10
- Andrew Jewett (Sun Oct 31 2010 - 18:55:33 CDT)
- Axel Kohlmeyer (Sat Oct 30 2010 - 10:58:17 CDT)
- Andrew Jewett (Sat Oct 30 2010 - 02:22:06 CDT)
- John Stone (Fri Oct 29 2010 - 09:28:23 CDT)
- Andrew Jewett (Thu Oct 28 2010 - 02:42:15 CDT)
merge
- John Stone (Mon Jan 03 2005 - 16:20:51 CST)
- Osmany Guirola Cruz (Mon Jan 03 2005 - 11:26:46 CST)
merge pbd psf files (update)
- Alessio Alexiadis (Wed Nov 07 2007 - 07:47:48 CST)
merge pdb
- Axel Kohlmeyer (Wed Feb 06 2008 - 10:41:43 CST)
- Lucie Huynh (Wed Feb 06 2008 - 10:29:58 CST)
Merge psf and pdb
- bo liu (Wed Sep 03 2008 - 00:17:13 CDT)
- bo liu (Tue Sep 02 2008 - 10:02:26 CDT)
- Axel Kohlmeyer (Tue Sep 02 2008 - 10:46:07 CDT)
- Axel Kohlmeyer (Tue Sep 02 2008 - 08:15:39 CDT)
- max_at_liaad.up.pt (Tue Sep 02 2008 - 04:28:53 CDT)
merge structure : It is working
- muniyamuthu.raviprasad_at_ndsu.edu (Tue Apr 27 2010 - 10:26:45 CDT)
MergeStructs Plugin in text mode
- Alexandre Suman de Araujo (Fri Mar 12 2010 - 13:40:03 CST)
- Robert Brunner (Fri Mar 12 2010 - 11:51:54 CST)
- Axel Kohlmeyer (Fri Mar 12 2010 - 09:11:24 CST)
- Alexandre Suman de Araujo (Thu Mar 11 2010 - 12:04:44 CST)
- Axel Kohlmeyer (Wed Mar 10 2010 - 07:57:38 CST)
- Alexandre Suman de Araujo (Wed Mar 10 2010 - 06:03:01 CST)
- Axel Kohlmeyer (Tue Mar 09 2010 - 13:24:49 CST)
- Alexandre Suman de Araujo (Tue Mar 09 2010 - 12:24:46 CST)
merging atomselection
- Tomek Wlodarski (Wed Mar 25 2009 - 17:56:49 CDT)
- Axel Kohlmeyer (Wed Mar 25 2009 - 17:20:45 CDT)
- Goutham (Wed Mar 25 2009 - 16:54:33 CDT)
merging two pdb files
- Richard Swenson (Fri Nov 09 2007 - 09:20:55 CST)
- Axel Kohlmeyer (Thu Nov 08 2007 - 21:55:17 CST)
- Axel Kohlmeyer (Thu Nov 08 2007 - 21:50:10 CST)
- Francesco Pietra (Thu Nov 08 2007 - 11:48:23 CST)
- Dibyadeep Paul (Thu Nov 08 2007 - 08:24:18 CST)
- Axel Kohlmeyer (Thu Nov 08 2007 - 06:39:05 CST)
- Dibyadeep Paul (Thu Nov 08 2007 - 06:06:19 CST)
merging two pdbs???
- genie lfs (Thu Apr 13 2006 - 02:36:54 CDT)
- John Stone (Thu Apr 13 2006 - 01:37:20 CDT)
- genie lfs (Thu Apr 13 2006 - 01:26:36 CDT)
Mesa libs + Mac OS X + HW stereo + vmd
- John Stone (Fri Jun 17 2005 - 17:20:52 CDT)
- Dr. Mick Knaggs (Fri Jun 17 2005 - 14:28:30 CDT)
Mesa rendering
- Axel Kohlmeyer (Thu Jul 20 2006 - 08:27:31 CDT)
- Olaf Lenz (Thu Jul 20 2006 - 07:56:26 CDT)
Message from Chaitanya Krishna
- Chaitanya Krishna (Fri Jan 27 2006 - 08:17:50 CST)
message in the console
- Axel Kohlmeyer (Mon Dec 19 2005 - 14:59:27 CST)
- John Stone (Mon Dec 19 2005 - 11:47:36 CST)
- Cojocaru,Vlad (Sun Dec 18 2005 - 13:42:18 CST)
Metal-Metal distance
- John Stone (Tue Apr 08 2003 - 17:42:22 CDT)
- chandran karunakaran (Tue Apr 08 2003 - 17:26:13 CDT)
Metal_Envornment Script
- John Stone (Fri May 24 2002 - 15:40:24 CDT)
- John Stone (Fri May 24 2002 - 12:05:19 CDT)
- John Stone (Fri May 24 2002 - 12:02:42 CDT)
- Storr, Mark (Fri May 24 2002 - 11:38:00 CDT)
methanol_solvent box
- Axel Kohlmeyer (Sat Oct 01 2011 - 08:31:05 CDT)
- lara lara (Sat Oct 01 2011 - 07:17:27 CDT)
- Axel Kohlmeyer (Sat Oct 01 2011 - 07:08:44 CDT)
- lara lara (Sat Oct 01 2011 - 05:45:32 CDT)
method for user-defined coloring
- Axel Kohlmeyer (Fri Jan 06 2012 - 12:44:15 CST)
- JhonY. I. (Fri Jan 06 2012 - 11:53:37 CST)
Method to measure DNA perterbation
- syma (Wed Nov 16 2005 - 02:28:14 CST)
- Kara Di Giorgio (Tue Nov 15 2005 - 19:43:35 CST)
Micelles...
- Luis Rosales (Wed Feb 09 2005 - 23:06:16 CST)
Min. Image Convention after Translation & Rotation
- Neelanjana Sengupta (Mon Oct 02 2006 - 12:14:44 CDT)
- Axel Kohlmeyer (Fri Sep 08 2006 - 14:00:58 CDT)
- Neelanjana Sengupta (Fri Sep 08 2006 - 13:01:13 CDT)
- Axel Kohlmeyer (Thu Sep 07 2006 - 20:08:45 CDT)
- Neelanjana Sengupta (Thu Sep 07 2006 - 17:53:22 CDT)
minimization changed the occupancy of all atoms to zero
- John Stone (Mon Sep 20 2010 - 16:37:47 CDT)
- Parisa Akhski (Mon Sep 20 2010 - 10:35:35 CDT)
- John Stone (Sun Sep 19 2010 - 14:09:41 CDT)
- Parisa Akhski (Fri Sep 17 2010 - 16:17:11 CDT)
minimization command
- Sourmaidou, Damiani (Wed Jan 23 2008 - 12:35:49 CST)
minimize during FEP & OS-FEP
- Raul Araya Secchi (Fri Mar 24 2006 - 10:49:09 CST)
minimum distance b/w two atoms
- John Stone (Tue Aug 15 2006 - 18:21:12 CDT)
- Narender Singh Maan (Tue Aug 15 2006 - 18:05:30 CDT)
Mirror reflection
- John Stone (Sat Feb 13 2010 - 01:32:37 CST)
- Rachel Ruskin (Sat Feb 13 2010 - 01:24:58 CST)
Misfunction of some plugins if compiled
- Axel Kohlmeyer (Wed Apr 18 2012 - 21:18:53 CDT)
- Vlastimil ZÃma (Tue Apr 17 2012 - 12:28:10 CDT)
mismatch between phi and pdb files
- John Stone (Tue Apr 10 2007 - 08:34:19 CDT)
- Michael Widmann (Tue Apr 10 2007 - 03:07:52 CDT)
Missing angles and dihedrals
- Axel Kohlmeyer (Mon Jul 21 2008 - 19:31:48 CDT)
- Schreiner Eduard (Mon Jul 21 2008 - 19:04:44 CDT)
- Rene Prieto (Mon Jul 21 2008 - 18:25:52 CDT)
Missing atom error while atoms exist in pdb
- Peter Freddolino (Thu Jul 06 2006 - 13:12:39 CDT)
- Rima Chaudhuri (Thu Jul 06 2006 - 11:46:46 CDT)
- Peter Freddolino (Thu Jul 06 2006 - 11:33:04 CDT)
- Peter Freddolino (Thu Jul 06 2006 - 11:27:45 CDT)
- Rima Chaudhuri (Thu Jul 06 2006 - 11:05:50 CDT)
missing atoms
- Axel Kohlmeyer (Mon Sep 27 2010 - 10:29:25 CDT)
- yan zhang (Mon Sep 27 2010 - 08:42:07 CDT)
missing basic tutorials for VMD scripting?
- John Stone (Mon Mar 03 2008 - 10:57:10 CST)
- Axel Kohlmeyer (Sat Mar 01 2008 - 06:49:32 CST)
- massimo camarda (Sat Mar 01 2008 - 03:02:49 CST)
missing bond problem
- Axel Kohlmeyer (Wed Apr 27 2005 - 10:01:50 CDT)
- haider abbas (Wed Apr 27 2005 - 06:28:03 CDT)
Missing bonds
- Karsten Suhre (Thu May 06 2004 - 01:44:52 CDT)
- Min Chin Chai (Wed May 05 2004 - 17:28:28 CDT)
- John Stone (Fri May 30 2003 - 10:03:34 CDT)
- noel.oboyle2_at_mail.dcu.ie (Fri May 30 2003 - 09:14:49 CDT)
missing cell length on DCD
- Axel Kohlmeyer (Sat Jul 14 2007 - 11:42:08 CDT)
- Èùìáò Åõáããåëéäçò (Sat Jul 14 2007 - 11:32:17 CDT)
- John Stone (Wed May 03 2006 - 14:15:13 CDT)
- ziemys_at_ecr6.ohio-state.edu (Wed May 03 2006 - 14:04:48 CDT)
missing fragments in molefacture
- Irene Newhouse (Wed Dec 01 2010 - 00:16:32 CST)
- Peter Freddolino (Tue Nov 30 2010 - 19:25:50 CST)
- Irene Newhouse (Mon Nov 29 2010 - 16:08:46 CST)
missing frames in trajectory file
- Parisa Akhski (Tue Oct 12 2010 - 16:33:12 CDT)
- John Stone (Tue Oct 12 2010 - 15:28:06 CDT)
- Parisa Akhski (Wed Oct 06 2010 - 17:49:29 CDT)
Missing main menu
- Stefan Gerlach (Tue Oct 10 2006 - 04:03:10 CDT)
- Axel Kohlmeyer (Mon Oct 09 2006 - 13:56:52 CDT)
- Stefan Gerlach (Mon Oct 09 2006 - 13:12:52 CDT)
missing operator at _@_in expression "$i _@_$n"
- Matt Watkins (Wed Nov 17 2010 - 12:31:51 CST)
- Axel Kohlmeyer (Wed Nov 17 2010 - 10:39:07 CST)
- ç¨‹æ˜Œåˆ© (Wed Nov 17 2010 - 09:59:16 CST)
missing RMSD tool in extensions menu
- John Stone (Sat Feb 14 2004 - 01:28:56 CST)
- Sergio E. Wong (Fri Feb 13 2004 - 18:22:42 CST)
Missing vmdplugin.h in VMD source code
- John Stone (Fri Mar 21 2003 - 16:31:34 CST)
- Paul Darwen (Wed Mar 19 2003 - 22:35:22 CST)
missing" Number of frames to render" in VMD window movie generator
- John Stone (Tue Jun 13 2006 - 11:51:15 CDT)
- pkb bioinfo (Mon Jun 12 2006 - 05:39:40 CDT)
Mistakes in the 1.8.7 User guide
- Myunggi Yi (Wed Sep 09 2009 - 13:20:21 CDT)
- Myunggi Yi (Wed Sep 09 2009 - 10:18:40 CDT)
Misunderstanding about SASA
- Axel Kohlmeyer (Sat Apr 21 2007 - 17:31:53 CDT)
- Patrick Redmill (Sat Apr 21 2007 - 10:14:19 CDT)
MM/PBSA in VMD
- L. Michel Espinoza-Fonseca (Fri Feb 27 2009 - 06:49:43 CST)
- Jianping Lin (Thu Feb 26 2009 - 12:12:46 CST)
MMTools
- Chathurika Abeyrathne (Tue Aug 16 2011 - 20:03:45 CDT)
- Swarna Patra (Thu Feb 17 2005 - 23:32:55 CST)
mmView - a tool for mmCIF exploration
- Daniel Svozil (Tue Dec 06 2011 - 05:38:03 CST)
Model building questions
- YangMingjun (Mon May 18 2009 - 08:14:38 CDT)
model export
- John Stone (Wed Jan 19 2005 - 16:48:59 CST)
- Paul D. Jones (Wed Jan 19 2005 - 13:33:04 CST)
model protein chain not displayed properly
- John Stone (Mon Sep 28 2009 - 15:08:22 CDT)
- Benjamin Bouvier (Mon Sep 28 2009 - 14:54:09 CDT)
- Elias Ahadi (Mon Sep 28 2009 - 13:38:32 CDT)
modelling phosphorylation
- L. Michel Espinoza-Fonseca (Mon Sep 18 2006 - 09:45:03 CDT)
- Dani Süveges (Mon Sep 18 2006 - 04:45:55 CDT)
Modelling program that does hydrogen adjust
- Axel Kohlmeyer (Fri May 28 2010 - 08:30:34 CDT)
- Bjoern Olausson (Fri May 28 2010 - 06:14:24 CDT)
- Jennifer Williams (Thu May 27 2010 - 10:21:49 CDT)
Modified DNA bases PDB files
- Shahid Qamar (Wed Sep 07 2005 - 14:00:54 CDT)
Modifying amino acid to a non-standard amino acid using VMD (proline to hydroxyproline)
- Ajasja LjubetiÄ (Fri Jul 09 2010 - 02:33:13 CDT)
- Sujata Sovani (Thu Jul 08 2010 - 19:05:55 CDT)
modifying mk3drame.tcl
- syma (Wed Oct 19 2005 - 04:39:12 CDT)
MOE and NAMD
- Bharat Kumar (Thu Dec 30 2010 - 18:31:21 CST)
- Axel Kohlmeyer (Thu Dec 30 2010 - 14:43:20 CST)
- Bharat Kumar (Wed Dec 29 2010 - 09:55:21 CST)
MOE discussion
- John Stone (Wed Apr 28 2004 - 17:03:31 CDT)
- Ahmet Bakan (Wed Apr 28 2004 - 17:26:07 CDT)
- Mike McCallum (Wed Apr 28 2004 - 14:43:22 CDT)
mol clipplane
- John Stone (Mon Jul 05 2004 - 14:12:41 CDT)
- Jiancong Xu (Fri Jul 02 2004 - 14:48:26 CDT)
mol clipplane very slow
- John Stone (Wed Jul 21 2004 - 09:50:13 CDT)
- Simon Latapie (Wed Jul 21 2004 - 02:03:44 CDT)
mol files
- John Stone (Tue Nov 08 2005 - 14:35:16 CST)
- Osmany Guirola Cruz (Tue Nov 08 2005 - 14:26:47 CST)
mol load and mol addfile
- Axel Kohlmeyer (Mon Mar 26 2007 - 16:33:51 CDT)
- Jianhui Tian (Mon Mar 26 2007 - 15:43:20 CDT)
Mol representation using coordinates
- Rogan Carr (Tue Apr 21 2009 - 09:03:35 CDT)
- Max (Tue Apr 21 2009 - 08:50:05 CDT)
mol urlload -- this doesn't seem to work in Windows (it does seem to work from Linux)
- John Stone (Fri Apr 16 2010 - 18:22:20 CDT)
- Andrew M. Simms (Fri Apr 16 2010 - 18:18:16 CDT)
- John Stone (Fri Apr 16 2010 - 18:10:22 CDT)
- Andrew M. Simms (Fri Apr 16 2010 - 17:48:11 CDT)
- John Stone (Fri Apr 16 2010 - 17:00:15 CDT)
- Andrew M. Simms (Fri Apr 16 2010 - 11:30:09 CDT)
mol volume
- John Stone (Wed Jan 29 2003 - 13:51:23 CST)
- J. Rui Rodrigues (Wed Jan 29 2003 - 10:17:30 CST)
Mol2 with Charmm atom types?
- Peter Freddolino (Tue Jun 01 2010 - 21:11:12 CDT)
- Edelmiro Moman (Mon May 31 2010 - 04:45:51 CDT)
Molden format plugin
- John Stone (Tue Mar 29 2011 - 10:23:49 CDT)
- Ignacio Fernández Galván (Thu Mar 17 2011 - 13:33:50 CDT)
- John Stone (Thu Mar 17 2011 - 11:28:24 CDT)
- Ignacio Fernández Galván (Thu Mar 17 2011 - 11:12:33 CDT)
molden xyz movie
- B. Bennion (Fri Oct 11 2002 - 00:40:52 CDT)
- eric hu (Thu Oct 10 2002 - 20:27:11 CDT)
- B. Bennion (Thu Oct 10 2002 - 18:22:59 CDT)
- eric hu (Thu Oct 10 2002 - 17:57:13 CDT)
molecular dipole moment
- Axel Kohlmeyer (Thu Feb 04 2010 - 05:11:59 CST)
- Jelle van Sijl (Wed Feb 03 2010 - 11:21:33 CST)
Molecular Display component
- Alexandre Suman de Araujo (Mon Mar 28 2005 - 10:56:17 CST)
Molecular dynamics order parameters
- Dallas Warren (Tue May 20 2003 - 16:58:09 CDT)
- Joe Huang (Tue May 20 2003 - 17:41:59 CDT)
- Justin Gullingsrud (Tue May 20 2003 - 13:03:29 CDT)
- David Chalmers (Tue May 20 2003 - 06:47:18 CDT)
molecular dynamics problems
- nettles (Mon Jul 19 2004 - 16:01:02 CDT)
- vlad.chindea_at_pharmatech.ro (Mon Jul 19 2004 - 15:45:48 CDT)
molecular orientation
- John Stone (Mon Jan 31 2005 - 13:40:42 CST)
- li (Fri Jan 28 2005 - 21:10:26 CST)
molecular representation: new lead generation software
- root (Fri Dec 05 1997 - 05:08:29 CST)
- Salvatore Guccione (Thu Dec 04 1997 - 04:43:51 CST)
- Salvatore Guccione (Wed Dec 03 1997 - 05:19:07 CST)
- root (Tue Dec 02 1997 - 06:18:33 CST)
- SciFarma (Tue Dec 02 1997 - 02:53:25 CST)
Molecular ruler ?
- John Stone (Tue Mar 30 2004 - 15:18:25 CST)
- John Stone (Tue Mar 30 2004 - 11:28:00 CST)
- Marc Baaden (Mon Mar 29 2004 - 14:44:03 CST)
Molecular Simulation using PHANToM Haptic
- Jim Phillips (Mon Nov 24 2003 - 18:24:47 CST)
- Harit Jani (Mon Nov 24 2003 - 16:36:01 CST)
molecular surface/multiple trajectory files/the speed in animation
- John Stone (Mon Aug 09 2004 - 23:22:56 CDT)
- Shirley Li (Mon Aug 09 2004 - 20:51:00 CDT)
- John Stone (Mon Aug 09 2004 - 16:17:12 CDT)
- Shirley Li (Sun Aug 08 2004 - 19:26:56 CDT)
molecule jumps from one site to the other?
- uu zhu (Mon Jul 13 2009 - 21:11:52 CDT)
molecule orientation in saved state
- John Stone (Thu Mar 15 2007 - 13:40:07 CDT)
- Subramanian Vaitheeswaran (Wed Mar 14 2007 - 12:21:53 CDT)
Molecule rotation
- Charles.Schwieters_at_nih.gov (Thu Mar 08 2001 - 12:54:04 CST)
- Justin Gullingsrud (Thu Mar 08 2001 - 12:32:15 CST)
- B. Bennion (Thu Mar 08 2001 - 12:16:46 CST)
molecule.write()
- John Stone (Thu Aug 25 2005 - 10:42:40 CDT)
- Guanglei Cui (Thu Aug 25 2005 - 10:19:55 CDT)
molecules drifted away from the focus....
- John Stone (Mon Sep 19 2005 - 15:13:15 CDT)
- Margaret Shun Cheung (Mon Sep 19 2005 - 15:08:15 CDT)
- John Stone (Mon Sep 19 2005 - 15:05:17 CDT)
- Margaret Shun Cheung (Sun Sep 18 2005 - 15:11:45 CDT)
molefacture "force tetrahedral" failure
- Peter Freddolino (Wed May 04 2011 - 19:31:24 CDT)
- Francesco Pietra (Wed May 04 2011 - 01:33:01 CDT)
Molefacture "namehead" error
- Peter Freddolino (Mon Apr 27 2009 - 20:29:31 CDT)
- Sebastián Gutiérrez (Mon Apr 27 2009 - 16:43:10 CDT)
Molefacture - VMD agreement
- Jernej Zidar (Thu Aug 11 2011 - 01:41:08 CDT)
- Axel Kohlmeyer (Thu Aug 11 2011 - 00:14:01 CDT)
- Marc Charendoff (Wed Aug 10 2011 - 23:10:27 CDT)
Molefacture error
- Peter Freddolino (Wed Jan 24 2007 - 17:28:14 CST)
- Javaria Ahmed (Wed Jan 24 2007 - 17:01:09 CST)
molfile plugin and the NetCDF file format
- John Stone (Thu May 26 2005 - 09:49:31 CDT)
- Lars Bruno Hansen (Thu May 26 2005 - 06:21:16 CDT)
molfile reader plugin woes
- Axel Kohlmeyer (Thu Nov 08 2007 - 06:44:28 CST)
- John Stone (Thu Nov 08 2007 - 07:24:35 CST)
- Olaf Lenz (Thu Nov 08 2007 - 02:31:42 CST)
Molscript
- John Stone (Thu Aug 26 2004 - 14:06:04 CDT)
- Eckhart Guthöhrlein (Thu Aug 26 2004 - 07:14:17 CDT)
- John Stone (Wed Aug 25 2004 - 09:29:13 CDT)
- Eckhart Guthöhrlein (Wed Aug 25 2004 - 04:05:04 CDT)
- John Stone (Tue Aug 24 2004 - 09:41:23 CDT)
- Eckhart Guthöhrlein (Tue Aug 24 2004 - 06:16:30 CDT)
- John Stone (Wed Mar 13 2002 - 09:31:36 CST)
- Alan Wilter Sousa da Silva (Wed Mar 13 2002 - 07:32:50 CST)
Molscripts
- John Stone (Tue Jun 16 2009 - 09:23:24 CDT)
- Tomek Wlodarski (Tue Jun 16 2009 - 08:54:22 CDT)
monitor helicity change
- Jufang Shan (Fri Feb 22 2008 - 11:37:55 CST)
- Jufang Shan (Fri Feb 22 2008 - 11:40:52 CST)
- OZGE ENGIN (Fri Feb 22 2008 - 01:58:26 CST)
- Axel Kohlmeyer (Thu Feb 21 2008 - 22:40:02 CST)
- Jufang Shan (Thu Feb 21 2008 - 19:06:14 CST)
monitoring h bonds
- John Stone (Tue Aug 24 2004 - 09:58:04 CDT)
- bora erdemli (Tue Aug 24 2004 - 06:52:50 CDT)
- John Stone (Mon Aug 23 2004 - 14:03:01 CDT)
- bora erdemli (Wed Aug 18 2004 - 08:59:56 CDT)
mono2poly question
- Joseph Bylund (Sun Feb 26 2012 - 23:24:00 CST)
monomer transposes boundary box
- Olaf Lenz (Wed May 26 2010 - 05:10:21 CDT)
- Hugo Gutierrez de Teran (Tue May 25 2010 - 08:25:37 CDT)
- Hugo Gutierrez de Teran (Tue May 25 2010 - 08:51:26 CDT)
- Axel Kohlmeyer (Tue May 25 2010 - 08:29:22 CDT)
- Axel Kohlmeyer (Tue May 25 2010 - 08:16:51 CDT)
- Axel Kohlmeyer (Tue May 25 2010 - 08:35:22 CDT)
- Hugo Gutiérrez de Teran (Tue May 25 2010 - 06:48:04 CDT)
Monte Carlo conformational search
- L. Michel Espinoza-Fonseca (Thu Aug 09 2007 - 07:58:19 CDT)
- Daniel Kennedy (Wed Aug 08 2007 - 11:23:54 CDT)
more animating trajectories
- Justin Gullingsrud (Thu Nov 08 2001 - 10:59:52 CST)
- Raik Grunberg (Mon Nov 05 2001 - 14:46:15 CST)
- John Stone (Sun Nov 04 2001 - 11:02:59 CST)
- tom keyes (Sun Nov 04 2001 - 09:02:35 CST)
- John Stone (Thu Nov 01 2001 - 13:13:47 CST)
- tom keyes (Wed Oct 31 2001 - 17:24:04 CST)
more animation
- Tom Keyes (Sun Oct 07 2001 - 17:17:23 CDT)
More Linux woes
- John Stone (Mon Jul 29 2002 - 13:42:58 CDT)
- Cesar Delgado (Fri Jul 26 2002 - 16:08:10 CDT)
more on lammps and VMD coordinates
- Axel Kohlmeyer (Tue Feb 26 2008 - 12:08:13 CST)
- Arienti, Marco UTRC (Tue Feb 26 2008 - 11:18:37 CST)
more precision in inverse trig functions
- Robert Brunner (Wed Aug 03 2005 - 09:22:21 CDT)
- vivek sharma (Wed Aug 03 2005 - 00:33:17 CDT)
- Samuel Flores (Tue Aug 02 2005 - 23:11:38 CDT)
More Script Problems
- John Stone (Tue Aug 26 2003 - 13:32:18 CDT)
- John Stone (Tue Aug 26 2003 - 09:31:24 CDT)
- Raymond C. Fort Jr. (Tue Aug 26 2003 - 09:12:25 CDT)
More than 99999 atoms?
- Dr Nicolas Le Novere (Mon May 29 2000 - 08:04:29 CDT)
- David Norris (Fri May 26 2000 - 09:51:19 CDT)
- Keith Refson (Fri May 26 2000 - 06:24:38 CDT)
morph
- John Stone (Wed Mar 07 2007 - 16:43:29 CST)
- christopher (Wed Feb 28 2007 - 16:18:48 CST)
motion correlation map
- Falgun Shah (Sun Mar 08 2009 - 12:41:18 CDT)
Mouse behavior in VMD
- Justin Gullingsrud (Mon Apr 24 2000 - 10:16:12 CDT)
Mouse event listener
- John Stone (Thu Mar 17 2011 - 14:02:14 CDT)
- Gianluca Interlandi (Thu Mar 17 2011 - 13:21:42 CDT)
- Gianluca Interlandi (Sun Sep 19 2010 - 20:42:36 CDT)
- John Stone (Sun Sep 19 2010 - 19:32:23 CDT)
- Gianluca Interlandi (Wed Sep 15 2010 - 16:11:41 CDT)
- Gianluca Interlandi (Wed Sep 15 2010 - 15:20:37 CDT)
mouse-move-rep in VMD 1.8
- John Stone (Fri Mar 21 2003 - 16:44:59 CST)
mousing problem under OS X
- John Stone (Tue Oct 21 2003 - 15:57:22 CDT)
- Charles McCallum (Fri Oct 17 2003 - 23:25:46 CDT)
Move labels
- Himanshu Khandelia (Thu May 24 2007 - 06:19:25 CDT)
- Arneh Babakhani (Wed May 23 2007 - 16:21:33 CDT)
move ligand around the protin
- Chris Harrison (Mon Oct 31 2011 - 11:54:43 CDT)
- Steven Neumann (Mon Oct 31 2011 - 10:46:07 CDT)
move matrix definition
- Axel Kohlmeyer (Tue Oct 28 2008 - 12:14:13 CDT)
- Edward Lyman (Tue Oct 28 2008 - 11:39:42 CDT)
Move molecule
- Uday Chippada (Thu Nov 18 2004 - 14:53:49 CST)
- John Stone (Thu Nov 18 2004 - 14:26:51 CST)
Move molecule to the origin of coordinate system
- Joshua Adelman (Wed Nov 25 2009 - 12:46:13 CST)
- John Stone (Wed Nov 25 2009 - 11:22:07 CST)
- snoze pa (Wed Nov 25 2009 - 10:49:12 CST)
move molecule using tcl
- John Stone (Sun Apr 18 2004 - 19:24:40 CDT)
- li (Thu Apr 15 2004 - 01:46:00 CDT)
move volume file
- Lane Votapka (Wed May 25 2011 - 13:17:26 CDT)
- Lane Votapka (Fri May 20 2011 - 17:11:49 CDT)
moveby command
- Axel Kohlmeyer (Sun Jul 31 2011 - 09:50:29 CDT)
- hanif mahboobi (Sun Jul 31 2011 - 06:13:57 CDT)
moveby command in vmd
- Mohamed Osman (Fri Dec 15 2006 - 12:05:43 CST)
- Nuno Ricardo Loureiro Ferreira (Fri Dec 15 2006 - 10:42:36 CST)
- John Stone (Fri Dec 15 2006 - 10:35:57 CST)
- Mohamed Osman (Fri Dec 15 2006 - 09:36:43 CST)
movie
- Axel Kohlmeyer (Sun Nov 09 2008 - 11:56:35 CST)
- Abu Naser (Sun Nov 09 2008 - 11:06:20 CST)
- Pijush Ghosh (Wed Oct 11 2006 - 19:38:21 CDT)
- Alexandr Isayev (Wed Oct 11 2006 - 18:46:16 CDT)
- John Stone (Wed Oct 11 2006 - 18:25:14 CDT)
- Pijush Ghosh (Wed Oct 11 2006 - 17:36:40 CDT)
movie for Openoffice
- Jeffrey A Tibbitt (Fri Nov 17 2006 - 18:36:30 CST)
- John Stone (Fri Nov 17 2006 - 15:55:00 CST)
- Nguyen Hoang Phuong (Fri Nov 17 2006 - 15:40:34 CST)
Movie for Trajectory analysis
- John Stone (Tue Apr 25 2006 - 10:41:00 CDT)
- Tamal Banerjee (Tue Apr 25 2006 - 00:09:17 CDT)
Movie frame rendering
- Peter Holm (Wed Jun 29 2005 - 11:06:50 CDT)
movie from amber traj
- John Stone (Tue Jan 14 2003 - 13:02:30 CST)
- eric hu (Tue Jan 14 2003 - 12:46:38 CST)
movie generation without runtime frame show
- Axel Kohlmeyer (Fri Feb 22 2008 - 06:54:42 CST)
- massimo camarda (Fri Feb 22 2008 - 04:15:58 CST)
movie maker
- John Stone (Tue Jun 16 2009 - 09:59:26 CDT)
- Alison Grinthal (Tue Jun 16 2009 - 09:44:48 CDT)
Movie maker in VMD
- siladitya mukherjee (Fri Sep 02 2011 - 12:41:02 CDT)
- Axel Kohlmeyer (Fri Sep 02 2011 - 12:14:32 CDT)
- siladitya mukherjee (Fri Sep 02 2011 - 11:12:21 CDT)
- siladitya mukherjee (Thu Sep 01 2011 - 13:04:58 CDT)
- siladitya mukherjee (Thu Sep 01 2011 - 11:11:15 CDT)
- kohsj_at_ihpc.a-star.edu.sg (Wed Jul 05 2006 - 12:01:00 CDT)
- Alexandr Isayev (Wed Jul 05 2006 - 10:27:02 CDT)
- Adrian Koh (Wed Jul 05 2006 - 04:30:49 CDT)
movie maker plugin doesn't load
- Justin Gullingsrud (Fri Aug 16 2002 - 11:07:18 CDT)
- Dr. Dan White (Fri Aug 16 2002 - 10:54:22 CDT)
Movie maker problem in VMD
- L. Michel Espinoza-Fonseca (Wed Sep 24 2008 - 11:56:11 CDT)
- Ananyo Bandyopadhyay (Wed Sep 24 2008 - 11:11:14 CDT)
Movie Maker skipping
- John Stone (Tue Apr 01 2008 - 12:53:13 CDT)
- John Stone (Tue Apr 01 2008 - 13:37:18 CDT)
- Samuel Coulbourn Flores (Tue Apr 01 2008 - 13:25:08 CDT)
- Samuel Coulbourn Flores (Tue Apr 01 2008 - 12:38:47 CDT)
Movie Maker: How to specify use of trajectory in the movie script file
- John Stone (Mon Mar 12 2007 - 20:56:51 CDT)
- Shatadal Ghosh (Sat Mar 10 2007 - 01:43:42 CST)
movie making
- Axel Kohlmeyer (Thu Nov 23 2006 - 15:36:32 CST)
- ivana adamovic (Thu Nov 23 2006 - 14:22:10 CST)
- Charles McCallum (Tue Aug 05 2003 - 16:05:53 CDT)
- Ioana Cozmuta (Tue Aug 05 2003 - 14:09:54 CDT)
movie making in batch mode
- barrett (Fri Feb 06 2004 - 04:57:01 CST)
- John Stone (Tue Dec 16 2003 - 20:47:04 CST)
- barrett (Tue Dec 16 2003 - 10:07:33 CST)
Movie making with smoothed trajectories
- Jim Kress (Thu May 24 2012 - 13:38:23 CDT)
- Axel Kohlmeyer (Thu May 24 2012 - 12:03:04 CDT)
- Jim Kress (Thu May 24 2012 - 11:02:18 CDT)
Movie of a xyz trajectory
- Berit Hinnemann (Wed Nov 26 2008 - 07:03:06 CST)
- Axel Kohlmeyer (Wed Nov 26 2008 - 05:12:34 CST)
- Roberto Gaspari (Wed Nov 26 2008 - 03:09:43 CST)
movie out of principal component analysis
- Ahmet Bakan (Wed Nov 23 2011 - 21:27:45 CST)
- maria goranovic (Wed Nov 23 2011 - 04:25:08 CST)
- Vlad Cojocaru (Tue Nov 22 2011 - 08:13:29 CST)
- Axel Kohlmeyer (Tue Nov 22 2011 - 08:10:39 CST)
- maria goranovic (Tue Nov 22 2011 - 06:04:46 CST)
- Davide Provasi (Mon Nov 21 2011 - 12:37:44 CST)
- maria goranovic (Mon Nov 21 2011 - 04:35:44 CST)
Movie Plugin
- Engelman, Joshua (Mon Apr 23 2012 - 16:32:01 CDT)
- John Stone (Mon Apr 23 2012 - 15:52:40 CDT)
- Axel Kohlmeyer (Sun Apr 22 2012 - 12:32:41 CDT)
- Engelman, Joshua (Sat Apr 21 2012 - 16:50:59 CDT)
- Engelman, Joshua (Sat Apr 21 2012 - 15:54:54 CDT)
movie quality degradation
- John Stone (Thu Mar 23 2006 - 11:51:41 CST)
- Wang, Yangzhou (Tue Mar 21 2006 - 10:50:45 CST)
movie rendering
- John Stone (Mon Nov 02 2009 - 13:54:09 CST)
- Liang, Linus H. (Mon Nov 02 2009 - 07:08:35 CST)
movie rendering on MacOS 10.6
- Toni Giorgino (Tue Sep 21 2010 - 07:13:21 CDT)
- Neelanjana Sengupta (Mon Sep 20 2010 - 10:51:59 CDT)
Movie Script
- John Stone (Wed Apr 23 2003 - 09:48:40 CDT)
- Rukman Hertadi (Wed Apr 23 2003 - 04:27:43 CDT)
movie showing loop movement
- John Stone (Thu Jul 29 2004 - 18:15:03 CDT)
- Karsten Suhre (Thu Jul 29 2004 - 01:43:24 CDT)
- Min Wu (Wed Jul 28 2004 - 17:57:37 CDT)
- Sanjeev B.S. (Wed Jul 28 2004 - 03:20:43 CDT)
- Min Wu (Wed Jul 28 2004 - 01:54:51 CDT)
movie under Windows
- John Stone (Fri Oct 05 2001 - 16:40:32 CDT)
- Nikolai Smolin (Fri Oct 05 2001 - 04:07:00 CDT)
movies on a mac
- Axel Kohlmeyer (Mon Jul 03 2006 - 11:30:24 CDT)
- Mark Lorch (Mon Jul 03 2006 - 10:13:49 CDT)
movies on mac os x (panther)
- Mengjuei Hsieh (Mon May 24 2004 - 18:23:44 CDT)
- James Rustad (Mon May 24 2004 - 15:30:19 CDT)
Movies using Cygwin's ImageMagick?
- Axel Kohlmeyer (Thu May 22 2008 - 09:33:30 CDT)
- Gustavo Seabra (Thu May 22 2008 - 09:18:45 CDT)
moving an atom in VMD
- John Stone (Tue Feb 14 2006 - 19:58:28 CST)
- lily jin (Tue Feb 14 2006 - 11:15:13 CST)
moving by angle and measuring angle
- Shahid Qamar (Wed Aug 17 2005 - 18:01:10 CDT)
Moving domains in VMD
- John Stone (Thu Feb 23 2006 - 11:46:13 CST)
- Francis Reyes (Thu Feb 23 2006 - 09:08:45 CST)
Moving Molecule
- BIN ZHANG (Mon Aug 24 2009 - 11:21:41 CDT)
- Steve Seibold (Mon Aug 24 2009 - 10:37:42 CDT)
moving molecules and getting the new positions
- Andrew Dalke (Tue Mar 30 1999 - 18:50:35 CST)
- Charles Schwieters (Tue Mar 30 1999 - 15:57:19 CST)
Moving molecules with Spaceball or with a Tool
- John Stone (Wed Feb 08 2006 - 18:06:43 CST)
- Marc Baaden (Fri Feb 03 2006 - 11:50:15 CST)
moving objects
- John Stone (Mon Jun 17 2002 - 13:40:21 CDT)
moving rotational center to display center
- Joseph Bylund (Tue Apr 12 2011 - 12:01:27 CDT)
Moving volume data with molecule
- Avell Diroll (Thu Mar 29 2007 - 11:59:01 CDT)
- John Stone (Thu Mar 29 2007 - 11:31:05 CDT)
- Avell Diroll (Thu Mar 29 2007 - 10:05:40 CDT)
mpeg doesn't run on media player
- John Stone (Fri Jun 25 2004 - 17:50:10 CDT)
- Bogdan Costescu (Fri Jun 25 2004 - 04:54:56 CDT)
- Axel Kohlmeyer (Thu Jun 24 2004 - 23:27:22 CDT)
- Harindar Keer (Thu Jun 24 2004 - 18:26:59 CDT)
mpeg movie from trajectory
- John Stone (Wed Nov 13 2002 - 09:40:41 CST)
- John Stone (Wed Nov 13 2002 - 09:38:49 CST)
- Stéphane Teletchéa (Wed Nov 13 2002 - 06:21:04 CST)
- Vlad Cojocaru (Wed Nov 13 2002 - 04:39:26 CST)
mpeg1 movie output makes 0Kb file - any one know why?
- John Stone (Thu Jan 12 2006 - 10:58:22 CST)
- John Stone (Thu Jan 12 2006 - 10:57:11 CST)
- Dan White (Thu Jan 12 2006 - 10:42:38 CST)
- John Stone (Thu Jan 12 2006 - 09:57:17 CST)
- Dan White (Thu Jan 12 2006 - 08:13:42 CST)
mpg image speed
- Chaitanya Krishna A (Tue Apr 12 2005 - 09:06:44 CDT)
- Axel Kohlmeyer (Mon Apr 11 2005 - 17:08:05 CDT)
- John Stone (Mon Apr 11 2005 - 14:44:42 CDT)
- qun.ma_at_njit.edu (Mon Apr 11 2005 - 14:28:20 CDT)
- Charles Moad (Mon Apr 11 2005 - 14:23:08 CDT)
- Chaitanya Krishna A (Mon Apr 11 2005 - 14:19:11 CDT)
- qun.ma_at_njit.edu (Mon Apr 11 2005 - 13:44:01 CDT)
- Andre Farias de Moura (Mon Apr 11 2005 - 09:40:46 CDT)
- Chaitanya Krishna A (Mon Apr 11 2005 - 12:02:09 CDT)
- Chang, Christopher (Mon Apr 11 2005 - 11:20:24 CDT)
- John Stone (Mon Apr 11 2005 - 10:00:16 CDT)
- Marc Q. Ma (Mon Apr 11 2005 - 08:41:56 CDT)
- Chaitanya Krishna A (Sun Apr 10 2005 - 01:01:08 CDT)
- Chaitanya Krishna A (Sun Apr 10 2005 - 00:04:34 CDT)
- Mauricio Carrillo Tripp (Thu Apr 07 2005 - 08:39:14 CDT)
- Chaitanya Krishna A (Thu Apr 07 2005 - 04:08:54 CDT)
MSD
- Hannes Loeffler (Thu May 30 2002 - 01:29:13 CDT)
- Paul Grayson (Wed May 29 2002 - 11:03:40 CDT)
- Storr, Mark (Wed May 29 2002 - 10:43:53 CDT)
MSD calculation from VMD RMSD plugin.
- Ranyere Deyler (Wed Mar 16 2011 - 14:33:58 CDT)
- Axel Kohlmeyer (Wed Mar 16 2011 - 14:23:30 CDT)
- Ranyere Deyler (Wed Mar 16 2011 - 14:12:45 CDT)
- Axel Kohlmeyer (Wed Mar 16 2011 - 10:54:41 CDT)
- Ranyere Deyler (Wed Mar 16 2011 - 09:24:54 CDT)
MSMS
- Peter Holm (Mon Jun 27 2005 - 10:37:57 CDT)
- John Stone (Mon Jun 27 2005 - 10:01:45 CDT)
- Peter Holm (Mon Jun 27 2005 - 07:19:22 CDT)
msms & vmd
- John Stone (Fri Feb 18 2000 - 12:11:25 CST)
- Robert Milius (Fri Feb 18 2000 - 11:51:29 CST)
msms 2.5 and vmd?
- John Stone (Thu Sep 14 2000 - 13:25:48 CDT)
- Robert Milius (Thu Sep 14 2000 - 13:09:41 CDT)
MSMS 2.5.3 is available for VMD users!!
- John Stone (Fri Oct 06 2000 - 09:25:38 CDT)
msms and socketPort
- John Stone (Fri Mar 12 2004 - 17:06:36 CST)
- Jerry Ebalunode (Fri Mar 12 2004 - 15:49:28 CST)
- John Stone (Fri Mar 12 2004 - 10:11:26 CST)
- Jerry Ebalunode (Fri Mar 12 2004 - 07:11:43 CST)
msms and vmd on amd athlon64.
- John Stone (Mon Mar 22 2004 - 11:21:55 CST)
- Michel Sanner (Fri Mar 19 2004 - 18:05:30 CST)
- Benjamin Goldsteen (Mon Mar 15 2004 - 14:18:16 CST)
- John Stone (Mon Mar 15 2004 - 12:58:52 CST)
- Jerry Ebalunode (Mon Mar 15 2004 - 12:49:18 CST)
MSMS and VMD: vertices discripancy
- John Stone (Thu Jul 03 2003 - 14:37:27 CDT)
- John Stone (Tue Jun 17 2003 - 12:51:20 CDT)
- Sanjeev B.S. (Tue Jun 17 2003 - 13:18:44 CDT)
- John Stone (Tue Jun 17 2003 - 12:22:39 CDT)
- Sanjeev B.S. (Tue Jun 17 2003 - 12:24:00 CDT)
- John Stone (Mon Jun 16 2003 - 18:48:56 CDT)
- Sanjeev B.S. (Sat Jun 14 2003 - 14:32:38 CDT)
MSMS calculations
- John Stone (Thu Aug 25 2005 - 18:10:50 CDT)
- floquet_at_icsn.cnrs-gif.fr (Thu Aug 25 2005 - 03:52:29 CDT)
MSMS help
- John Stone (Mon Apr 03 2000 - 15:19:25 CDT)
- Andrew Hall (Mon Apr 03 2000 - 15:04:30 CDT)
MSMS in VMD
- Andrew Dalke (Wed Oct 15 1997 - 00:30:42 CDT)
- Axel Berg (Tue Oct 14 1997 - 07:58:11 CDT)
- Xiao-Ping Zhang (Sat Mar 18 2000 - 14:00:37 CST)
- Xiao-Ping Zhang (Fri Mar 17 2000 - 08:28:32 CST)
- John Stone (Fri Mar 17 2000 - 09:16:16 CST)
- Xiao-Ping Zhang (Fri Mar 17 2000 - 07:53:22 CST)
MSMS installation
- John Stone (Mon Jun 08 2009 - 16:09:42 CDT)
- craig bullington (Mon Jun 08 2009 - 14:27:57 CDT)
MSMS of selection's contribution to total surface
- John Stone (Wed Nov 30 2005 - 10:15:45 CST)
- Eden Duthie (Tue Nov 29 2005 - 18:10:05 CST)
MSMS on linux and Draw Multiple Frames in VMD 1.8.3
- John Stone (Thu Apr 14 2005 - 10:27:58 CDT)
- Dr. Daniel James White PhD (Thu Apr 14 2005 - 09:17:40 CDT)
MSMS on Windows
- John Stone (Wed Jan 17 2007 - 01:35:38 CST)
- Peter Hains (Tue Jan 16 2007 - 23:21:52 CST)
MSMS plugin for windows
- Lu Lin (Fri Jan 18 2008 - 03:09:13 CST)
- John Stone (Thu Jan 17 2008 - 12:56:24 CST)
- Lu Lin (Thu Jan 17 2008 - 11:47:52 CST)
- L. Michel Espinoza-Fonseca (Thu Jan 17 2008 - 09:26:26 CST)
- Lu Lin (Thu Jan 17 2008 - 08:35:55 CST)
MSMS probe radius and CHARMM VDW radii
- John Stone (Mon Dec 01 2003 - 15:37:46 CST)
- Tyler Luchko (Sun Nov 23 2003 - 16:18:10 CST)
MSMS problem
- Bogdan Costescu (Wed Dec 07 2005 - 06:56:06 CST)
- John Stone (Tue Dec 06 2005 - 16:18:31 CST)
- Michel Sanner (Tue Dec 06 2005 - 15:33:09 CST)
- Bogdan Costescu (Tue Dec 06 2005 - 11:31:53 CST)
- John Stone (Mon Dec 05 2005 - 13:56:07 CST)
- Cojocaru,Vlad (Mon Dec 05 2005 - 13:36:33 CST)
- Bogdan Costescu (Mon Dec 05 2005 - 13:21:19 CST)
- Cojocaru,Vlad (Sun Dec 04 2005 - 06:05:43 CST)
- Cojocaru,Vlad (Sat Dec 03 2005 - 02:40:29 CST)
msms question...
- John Stone (Fri Mar 07 2003 - 17:00:41 CST)
- Lubos Vrbka (Fri Mar 07 2003 - 11:04:44 CST)
- John Stone (Fri Mar 07 2003 - 09:40:43 CST)
- Lubos Vrbka (Fri Mar 07 2003 - 07:48:17 CST)
MSMS under Windows
- John Stone (Mon Sep 20 2004 - 15:37:30 CDT)
- Oleg V. Stroganov (Sun Sep 19 2004 - 06:33:40 CDT)
MSMS variable
- John Stone (Tue Nov 30 2004 - 16:53:35 CST)
- Brian Bennion (Tue Nov 30 2004 - 16:48:21 CST)
- John Stone (Tue Nov 30 2004 - 16:34:41 CST)
- Brian Bennion (Tue Nov 30 2004 - 13:15:47 CST)
- Luis Rosales (Mon Nov 29 2004 - 18:38:55 CST)
- John Stone (Mon Nov 29 2004 - 00:08:22 CST)
- Luis Rosales (Wed Nov 24 2004 - 16:52:59 CST)
- Brian Bennion (Wed Nov 24 2004 - 16:23:55 CST)
- Luis Rosales (Wed Nov 24 2004 - 16:13:44 CST)
- Brian Bennion (Wed Nov 24 2004 - 10:13:23 CST)
- John Stone (Wed Nov 24 2004 - 09:51:44 CST)
- Luis Rosales (Tue Nov 23 2004 - 18:52:35 CST)
MSMS variable (and VMDMSMSUSEFILE)
- Luis Rosales (Tue Nov 30 2004 - 19:10:11 CST)
MSVC Projects Corrupt and Missing
- Wesley Smith (Sat Jan 26 2008 - 14:51:01 CST)
- Wesley Smith (Thu Jan 24 2008 - 23:25:14 CST)
- Wesley Smith (Thu Jan 24 2008 - 22:53:58 CST)
- John Stone (Thu Jan 24 2008 - 22:45:18 CST)
- Wesley Smith (Thu Jan 24 2008 - 22:56:03 CST)
- Axel Kohlmeyer (Thu Jan 24 2008 - 22:42:47 CST)
- John Stone (Thu Jan 24 2008 - 23:10:27 CST)
- Wesley Smith (Thu Jan 24 2008 - 22:18:09 CST)
Multimodel PDB files with different models (again)?
- Boris Steipe (Tue May 18 2010 - 16:19:46 CDT)
Multimodel PDB files with Different Models?
- John Stone (Thu Jun 25 2009 - 13:11:30 CDT)
- Kevin Wu (Wed Jun 24 2009 - 21:05:30 CDT)
multiple alignment tool
- Dan Wright (Fri Feb 04 2005 - 16:23:32 CST)
- John Stone (Thu Feb 03 2005 - 14:22:49 CST)
- Klaus Hoffmeier (Thu Feb 03 2005 - 10:59:10 CST)
- Klaus Hoffmeier (Thu Feb 03 2005 - 10:30:52 CST)
multiple attempts before vmd starts up
- klsale (Thu Oct 18 2007 - 13:35:36 CDT)
- Boris Steipe (Thu Oct 18 2007 - 13:47:21 CDT)
- ZT Yew (Thu Oct 18 2007 - 07:03:23 CDT)
- Boris Steipe (Thu Oct 18 2007 - 00:07:55 CDT)
- ZT Yew (Wed Oct 17 2007 - 20:25:55 CDT)
- John Stone (Wed Oct 17 2007 - 20:34:41 CDT)
multiple automated calls to NAMD
- Axel Kohlmeyer (Fri Jun 10 2005 - 02:17:32 CDT)
- nordgren_at_sas.upenn.edu (Thu Jun 09 2005 - 21:56:31 CDT)
- Axel Kohlmeyer (Thu Jun 09 2005 - 02:38:35 CDT)
- nordgren_at_sas.upenn.edu (Wed Jun 08 2005 - 20:57:56 CDT)
multiple cells representation
- John Stone (Mon Feb 24 2003 - 22:04:47 CST)
- Justin Gullingsrud (Mon Feb 24 2003 - 20:31:07 CST)
- Ioana Cozmuta (Mon Feb 24 2003 - 19:19:32 CST)
multiple colors for a single atom
- BIN ZHANG (Mon Feb 23 2009 - 11:55:48 CST)
- John Stone (Mon Feb 23 2009 - 09:06:43 CST)
- BIN ZHANG (Mon Feb 23 2009 - 00:05:50 CST)
Multiple data files on command line does not seem to work
- John Stone (Tue May 16 2006 - 10:58:05 CDT)
- Rob (Mon May 15 2006 - 22:36:09 CDT)
multiple dx frames
- Leonardo Trabuco (Wed Feb 28 2007 - 14:51:16 CST)
- Axel Kohlmeyer (Wed Feb 28 2007 - 14:42:34 CST)
- Leonardo Trabuco (Wed Feb 28 2007 - 14:16:32 CST)
- Jim Fonseca (Wed Feb 28 2007 - 13:49:12 CST)
multiple entry mol2 file
- John Stone (Wed Sep 15 2004 - 16:45:38 CDT)
- John Stone (Tue Aug 17 2004 - 12:56:43 CDT)
- Jerry Ebalunode (Tue Aug 17 2004 - 07:15:05 CDT)
multiple id's
- Jim Phillips (Mon Jan 19 2004 - 06:50:12 CST)
- himanshu chandola (Mon Jan 19 2004 - 15:44:29 CST)
Multiple incompatible definitions warning
- Subramanian Vaitheeswaran (Thu Nov 06 2008 - 11:25:01 CST)
- Peter Freddolino (Thu Nov 06 2008 - 12:04:06 CST)
multiple peptides simulation
- Noriaki Okimoto (Mon Apr 10 2006 - 14:14:18 CDT)
Multiple residues at same position
- Peter Freddolino (Sun Apr 16 2006 - 08:38:30 CDT)
- snoze pa (Sun Apr 16 2006 - 02:01:35 CDT)
Multiple Sequence Alignment Extension
- John Stone (Tue Dec 14 2004 - 08:55:41 CST)
- Klaus Hoffmeier (Tue Dec 14 2004 - 08:06:22 CST)
Multiple Stream Files: What Order?
- Bryan Roessler (Wed Dec 14 2011 - 11:20:25 CST)
multiple structure PDB files
- Stéphane Teletchéa (Wed Sep 25 2002 - 03:17:31 CDT)
- John Stone (Tue Sep 24 2002 - 14:19:01 CDT)
multiple topology files and resetpsf
- Goldsmith, Jacob (Wed Feb 09 2011 - 07:38:42 CST)
- Axel Kohlmeyer (Tue Feb 08 2011 - 16:38:35 CST)
- Goldsmith, Jacob (Tue Feb 08 2011 - 10:11:54 CST)
multiplot : integration of undrawing command (?)
- Axel Kohlmeyer (Sun Feb 08 2009 - 23:48:49 CST)
- Nadja Lederer (Thu Feb 05 2009 - 05:14:43 CST)
multiplot: control reaction for click on datapoints?
- Nadja Lederer (Thu Nov 27 2008 - 10:09:53 CST)
- Nadja Lederer (Wed Nov 26 2008 - 14:00:18 CST)
- Nadja Lederer (Wed Nov 26 2008 - 11:12:20 CST)
- Nadja Lederer (Wed Nov 26 2008 - 02:34:31 CST)
Multiseq
- Wendy González (Mon Dec 03 2007 - 07:11:24 CST)
- John Stone (Sun Dec 02 2007 - 22:57:53 CST)
- Wendy González (Fri Nov 30 2007 - 15:57:18 CST)
multiseq and fasta files from pdb
- John Stone (Mon Oct 05 2009 - 21:14:10 CDT)
- Vlad Cojocaru (Thu Oct 01 2009 - 04:26:01 CDT)
multiseq doesn't respond to ctrl key correctly
- Kirby Vandivort (Fri Feb 10 2012 - 10:19:22 CST)
- charles sun (Thu Feb 09 2012 - 22:58:45 CST)
Multiseq error
- John Stone (Wed Apr 15 2009 - 13:57:57 CDT)
- Karne, Sai Harish Babu (Wed Apr 15 2009 - 13:48:18 CDT)
Multiseq error: 'can't read 'SequenceIDtoMolID(122)': no such element in array'
- Elijah Roberts (Wed Oct 22 2008 - 22:24:11 CDT)
- Perreault, Roger Edward (Wed Oct 22 2008 - 20:34:57 CDT)
Multiseq in text mode
- Ekta Khurana (Wed Feb 09 2011 - 13:23:19 CST)
- Anurag Sethi (Tue Feb 08 2011 - 12:11:29 CST)
- Kirby Vandivort (Tue Feb 08 2011 - 11:49:43 CST)
- Leonardo Trabuco (Tue Feb 08 2011 - 08:18:44 CST)
- Ekta Khurana (Tue Feb 08 2011 - 08:06:16 CST)
- Jérôme Hénin (Tue Feb 08 2011 - 03:43:39 CST)
- Ekta Khurana (Mon Feb 07 2011 - 23:33:00 CST)
- John Stone (Mon Feb 07 2011 - 20:30:11 CST)
- Axel Kohlmeyer (Mon Feb 07 2011 - 19:33:48 CST)
- Ekta Khurana (Mon Feb 07 2011 - 13:11:57 CST)
MultiSeq on the windows vista OS
- Alexandr Isayev (Mon Sep 24 2007 - 14:25:00 CDT)
- Lhee, SangMoon (Mon Sep 24 2007 - 13:30:25 CDT)
Multiseq question
- Tomek Wlodarski (Tue Nov 24 2009 - 05:17:59 CST)
- Boris Steipe (Mon Nov 23 2009 - 09:48:34 CST)
- Tomek Wlodarski (Mon Nov 23 2009 - 05:43:14 CST)
- John Stone (Mon Nov 16 2009 - 15:28:45 CST)
- Tomek Wlodarski (Sat Nov 14 2009 - 08:02:43 CST)
Multiseq refusing to load a structure due to taxonomy problem
- Elijah Roberts (Tue Jul 29 2008 - 13:17:04 CDT)
- Robison, Keith (Tue Jul 29 2008 - 13:32:19 CDT)
- Robison, Keith (Tue Jul 29 2008 - 08:22:24 CDT)
multiseq/stamp alignment of coiled coil bundle and homo-dimer
- Kirby Vandivort (Fri Jul 30 2010 - 14:30:05 CDT)
- Ian Stokes-Rees (Fri Jul 30 2010 - 13:14:47 CDT)
- Kirby Vandivort (Thu Jul 29 2010 - 10:33:26 CDT)
- John Stone (Thu Jul 29 2010 - 10:21:11 CDT)
- Kirby Vandivort (Wed Jul 28 2010 - 16:36:10 CDT)
- John Stone (Wed Jul 28 2010 - 16:23:51 CDT)
- Ian Stokes-Rees (Tue Jul 27 2010 - 16:54:53 CDT)
- Ian Stokes-Rees (Tue Jul 27 2010 - 14:37:02 CDT)
multistructure XYZ
- John Stone (Thu Oct 28 2004 - 17:32:28 CDT)
- Herbert Georg (Thu Oct 28 2004 - 16:11:31 CDT)
- John Stone (Thu Oct 28 2004 - 16:47:07 CDT)
- Herbert Georg (Thu Oct 28 2004 - 15:50:12 CDT)
- Herbert Georg (Thu Oct 28 2004 - 15:46:59 CDT)
- John Stone (Thu Oct 28 2004 - 16:19:47 CDT)
- Herbert Georg (Thu Oct 28 2004 - 14:52:58 CDT)
mutate amino acid
- hamze rahimi (Sun Jun 19 2011 - 02:25:05 CDT)
mutate by D-residues...
- Axel Kohlmeyer (Fri Jun 27 2008 - 20:47:58 CDT)
- Yasser Almeida Hernández (Fri Jun 27 2008 - 16:44:25 CDT)
- Yasser Almeida Hernández (Fri Jun 27 2008 - 16:45:00 CDT)
Mutate nucleotides
- Maurizio Olla (Tue Jan 29 2008 - 23:51:05 CST)
mutate residue
- Peter Freddolino (Thu Aug 09 2007 - 21:29:10 CDT)
- xzhao_at_uiuc.edu (Thu Aug 09 2007 - 21:02:15 CDT)
Mutating a residue to a nonstandard amino acid
- Ajasja LjubetiÄ (Wed Jul 20 2011 - 16:57:49 CDT)
- Alisha \ (Tue Jul 19 2011 - 16:14:56 CDT)
Mutator plugin console
- John Stone (Thu Feb 25 2010 - 16:53:16 CST)
- q (Mon Feb 22 2010 - 07:04:50 CST)
mutator plugin generates extra bond for tip3
- Burgess, Don E (Fri Sep 30 2011 - 11:49:26 CDT)
Mutator Plugin Patching
- Thomas Freeman (Thu Mar 03 2011 - 12:21:01 CST)
- JC Gumbart (Wed Mar 02 2011 - 23:48:24 CST)
- Thomas Freeman (Wed Mar 02 2011 - 15:27:21 CST)
Mutator: Losing Chromophore
- Carmen Valladares (Wed Aug 19 2009 - 19:14:57 CDT)
my solution to the freezing problem.
- Tommy Wang (Wed May 15 2002 - 20:32:30 CDT)
N-methylated amino acid topologies
- Joakim Swedberg (Wed May 02 2012 - 19:20:41 CDT)
NAMD 2.2 Release Announcement
- Jim Phillips (Fri Sep 29 2000 - 18:32:22 CDT)
NAMD 2.2b1 Release Announcement
- Jim Phillips (Tue Sep 05 2000 - 17:39:24 CDT)
NAMD 2.3 Release Announcement
- Jim Phillips (Thu Aug 02 2001 - 14:36:22 CDT)
NAMD 2.3b1 Release
- Jim Phillips (Fri Feb 23 2001 - 11:01:55 CST)
NAMD 2.4 Released
- Jim Phillips (Mon Mar 11 2002 - 14:24:39 CST)
NAMD 2.4b1 released
- Jim Phillips (Mon Jan 28 2002 - 16:44:30 CST)
NAMD 2.4b2 Release Announcement
- Jim Phillips (Fri Feb 22 2002 - 12:56:35 CST)
NAMD 2.5 Released
- Jim Phillips (Mon Sep 29 2003 - 14:02:48 CDT)
NAMD 2.5b2 Released
- Jim Phillips (Mon Sep 15 2003 - 19:53:01 CDT)
NAMD 2.5b3 Released
- Jim Phillips (Fri Sep 19 2003 - 18:02:58 CDT)
NAMD 2.6 released
- Jim Phillips (Thu Aug 31 2006 - 17:13:40 CDT)
NAMD 2.6b1 Released
- Jim Phillips (Tue Aug 02 2005 - 12:31:02 CDT)
NAMD 2.6b2 released
- Jim Phillips (Sun Aug 20 2006 - 15:43:38 CDT)
namd callback command
- Will Sheffler (Mon Aug 05 2002 - 03:51:14 CDT)
NAMD can't malloc() error
- Axel Kohlmeyer (Mon Oct 19 2009 - 13:29:20 CDT)
- Ronald Salesky (Mon Oct 19 2009 - 12:44:55 CDT)
namd CG minimization error: unable to find angle parameters for nxg nxx nxg
- Francesco Pietra (Fri Dec 11 2009 - 09:52:43 CST)
- Peter Freddolino (Thu Dec 10 2009 - 15:06:05 CST)
- Francesco Pietra (Thu Dec 10 2009 - 10:27:13 CST)
NAMD constant pressure/temp advice
- David Chalmers (Mon Sep 01 2003 - 03:06:35 CDT)
NAMD Energy - Hexagonal Cell
- John Stone (Thu Mar 15 2007 - 14:03:48 CDT)
- Alessandro Cembran (Mon Mar 12 2007 - 18:10:14 CDT)
NAMD energy plugin
- Nicholas Musolino (Thu Aug 05 2010 - 10:17:23 CDT)
- Axel Kohlmeyer (Thu Aug 05 2010 - 08:53:18 CDT)
- Mert Gür (Thu Aug 05 2010 - 08:51:04 CDT)
- politr_at_huji.ac.il (Thu Aug 05 2010 - 07:41:37 CDT)
- L. Michel Espinoza-Fonseca (Sun Feb 10 2008 - 16:10:36 CST)
- Peter Freddolino (Sun Feb 10 2008 - 15:55:50 CST)
- L. Michel Espinoza-Fonseca (Sun Feb 10 2008 - 15:44:04 CST)
- Peter Freddolino (Wed Aug 15 2007 - 20:39:09 CDT)
- Peter Freddolino (Wed Aug 15 2007 - 20:36:13 CDT)
- Cesar Luis Avila (Wed Aug 15 2007 - 11:58:41 CDT)
- Cesar Luis Avila (Wed Aug 15 2007 - 11:15:17 CDT)
- Cesar Luis Avila (Wed Aug 15 2007 - 08:22:59 CDT)
- Peter Freddolino (Wed Aug 15 2007 - 11:50:55 CDT)
namd energy plugin error: toplevel
- Axel Kohlmeyer (Tue Jan 11 2011 - 09:22:22 CST)
- Michela Candotti (Tue Jan 11 2011 - 04:09:14 CST)
NAMD energy plugin question
- Peter Freddolino (Mon Apr 05 2010 - 20:44:59 CDT)
- Rachel Ruskin (Mon Apr 05 2010 - 12:02:44 CDT)
NAMD failure on Berendsen pressure scheme
- Vlad Cojocaru (Wed Jul 30 2003 - 07:53:39 CDT)
NAMD from command line args
- John Stone (Sat May 06 2006 - 21:25:47 CDT)
- Chang Hu (Sat May 06 2006 - 21:09:53 CDT)
namd gui problem
- sarah k (Fri May 14 2010 - 00:16:34 CDT)
- Joshua Adelman (Tue May 11 2010 - 07:26:58 CDT)
- sarah k (Tue May 11 2010 - 02:29:02 CDT)
namd help?
- Axel Kohlmeyer (Tue Feb 05 2008 - 12:54:36 CST)
- Corenflos, Steven Charles (Tue Feb 05 2008 - 12:15:47 CST)
NAMD IMD large protein model
- John Stone (Fri Jun 13 2003 - 15:53:15 CDT)
- Marc Baaden (Fri Jun 13 2003 - 05:35:45 CDT)
- Jim Phillips (Thu Jun 12 2003 - 11:32:45 CDT)
- Marc Baaden (Thu Jun 12 2003 - 10:23:38 CDT)
- Dr. Daniel James White PhD (Thu Jun 12 2003 - 08:51:23 CDT)
NAMD minimization error
- sseefeld_at_uwm.edu (Tue Aug 15 2006 - 10:01:28 CDT)
- Leonardo Trabuco (Sat Aug 12 2006 - 18:52:49 CDT)
- sseefeld_at_uwm.edu (Sat Aug 12 2006 - 18:45:17 CDT)
- JC Gumbart (Sat Aug 12 2006 - 17:29:49 CDT)
- JC Gumbart (Sat Aug 12 2006 - 12:02:28 CDT)
- sseefeld_at_uwm.edu (Sat Aug 12 2006 - 11:50:42 CDT)
NAMD problem (ReceiveDatagram: recv: Resource temporarily unavailable:)
- Reuter Nathalie (Wed Dec 12 2001 - 11:20:53 CST)
namd restraints question
- Vlad Cojocaru (Mon Jul 28 2003 - 14:54:28 CDT)
NAMD setup for organic compounds
- Sasha Buzko (Thu Jul 09 2009 - 19:17:09 CDT)
- Peter Freddolino (Thu Jul 09 2009 - 19:07:56 CDT)
- Sasha Buzko (Thu Jul 09 2009 - 11:46:48 CDT)
NAMD support for MNDO semi-empirical model
- Chandra Ramananjara (Mon May 15 2006 - 10:34:07 CDT)
NAMD to Amber
- John Stone (Thu Apr 06 2006 - 09:49:39 CDT)
- AYTUG TUNCEL (Thu Apr 06 2006 - 08:46:10 CDT)
NAMD trajectories in VMD
- Axel Kohlmeyer (Fri Oct 26 2007 - 12:22:32 CDT)
- Samuel Flores (Fri Oct 26 2007 - 11:51:26 CDT)
NAMD tutorial for Windows problem reading pgn file from vmd tkconsole
- Eric H. Lee (Fri Aug 21 2009 - 17:13:21 CDT)
- Eric H. Lee (Fri Aug 21 2009 - 16:40:52 CDT)
- Carmen Valladares (Fri Aug 21 2009 - 16:26:04 CDT)
- John Stone (Fri Aug 21 2009 - 16:30:30 CDT)
NAMD unit cell data
- Peter Jones (Thu Jul 20 2006 - 00:43:24 CDT)
NAMD, IMD, VMD and interaction
- John Stone (Mon Sep 29 2003 - 15:11:40 CDT)
- Jeroen Akershoek (Mon Sep 29 2003 - 09:32:29 CDT)
namd-I : Constraint failure in RATTLE algorithm for atom 268
- Ajasja LjubetiÄ (Fri Oct 29 2010 - 01:41:51 CDT)
- surendra jain (Thu Oct 28 2010 - 23:39:30 CDT)
NAMD-L mailing list
- Jim Phillips (Tue Oct 07 2003 - 15:15:41 CDT)
namd-l-outgoing2@halifax.ks.uiuc.edu
- lily jin (Wed Jun 20 2007 - 15:25:56 CDT)
namd-l: .COOR TO PDB FILE
- JC Gumbart (Sat Aug 13 2011 - 01:29:04 CDT)
namd-l: a display problem
- L. Michel Espinoza-Fonseca (Thu Mar 09 2006 - 10:53:08 CST)
namd-l: a name quesiton
- Leonardo G. Trabuco (Sat Apr 08 2006 - 13:15:56 CDT)
namd-l: abnormal water surface after nvt and npt for POPC membrane
- Axel Kohlmeyer (Wed Oct 28 2009 - 10:55:16 CDT)
namd-l: Aligning structures
- Luis Gracia (Fri Mar 10 2006 - 08:45:18 CST)
- EPF $Esben Peter Friis$ (Fri Mar 10 2006 - 01:34:40 CST)
- Peter Freddolino (Thu Mar 09 2006 - 21:37:05 CST)
namd-l: Atom movement within a range of Z value
- Eduardo Cruz-Chu (Tue May 11 2010 - 15:45:59 CDT)
- Axel Kohlmeyer (Tue May 11 2010 - 15:27:44 CDT)
namd-l: bilayer thickness in simulation of POPC membranes
- maria goranovic (Mon Aug 13 2007 - 09:16:09 CDT)
- maria goranovic (Mon Aug 13 2007 - 07:55:48 CDT)
namd-l: building a MARTINI bilayer
- Peter Freddolino (Wed Apr 21 2010 - 13:16:00 CDT)
namd-l: bulk density in RDF.tcl
- griadi_at_utalca.cl (Wed Mar 29 2006 - 16:55:07 CST)
namd-l: Can't find C-PDB bond parameters
- JC Gumbart (Mon Feb 15 2010 - 12:06:41 CST)
- Francesco Pietra (Mon Feb 15 2010 - 11:44:52 CST)
- JC Gumbart (Mon Feb 15 2010 - 08:15:53 CST)
namd-l: catdcd and dcdunitcell
- Joshua D. Moore (Mon Jul 25 2005 - 14:16:16 CDT)
- John Stone (Mon Jul 25 2005 - 13:50:03 CDT)
- Joshua D. Moore (Fri Jul 22 2005 - 16:04:00 CDT)
namd-l: cff91 force field in namd + A Question
- Ahmet Bakan (Wed Aug 25 2004 - 10:53:59 CDT)
namd-l: Changing the Secondary Structure of a Protein
- Peter Freddolino (Sun Dec 28 2008 - 08:48:38 CST)
- JC Gumbart (Sun Dec 28 2008 - 08:55:03 CST)
namd-l: charm27 forcefield_topology
- Peter Freddolino (Wed Feb 25 2009 - 15:09:23 CST)
namd-l: conformational alignment
- Giovanni Bellesia (Wed Mar 30 2005 - 16:40:36 CST)
namd-l: CoordinateTransformation
- Jerome Henin (Sun Sep 03 2006 - 17:54:17 CDT)
namd-l: counterion software
- mashaojie163 (Mon Oct 11 2004 - 01:30:48 CDT)
namd-l: Creating topology for carbon nanotube / any new structure
- prateeksha s (Tue Dec 18 2007 - 23:10:42 CST)
namd-l: dcd files generated with catdcd
- J. Rui Rodrigues (Fri Apr 30 2004 - 14:02:49 CDT)
- Giovanni (Fri Apr 30 2004 - 13:08:33 CDT)
- John Stone (Fri Apr 30 2004 - 12:47:59 CDT)
- J. Rui Rodrigues (Fri Apr 30 2004 - 10:51:27 CDT)
namd-l: DCD for windows
- Gianluca Interlandi (Tue Mar 06 2007 - 17:32:09 CST)
namd-l: diffusion coefficient from rmsd
- bo liu (Thu Aug 28 2008 - 01:38:38 CDT)
- Axel Kohlmeyer (Wed Aug 27 2008 - 22:39:52 CDT)
namd-l: display all frames simultaneously
- Samuel Coulbourn Flores èŠ±å±± (Fri Apr 17 2009 - 11:35:11 CDT)
namd-l: electric field
- Peter Freddolino (Sun Sep 03 2006 - 08:10:10 CDT)
namd-l: Energy plot script
- bo liu (Thu May 15 2008 - 13:00:23 CDT)
- Subramanian Vaitheeswaran (Thu May 15 2008 - 07:28:20 CDT)
namd-l: error in membrane producing
- John Stone (Thu Apr 13 2006 - 01:21:39 CDT)
- mashaojienuaa (Sun Mar 19 2006 - 20:19:40 CST)
namd-l: Error in running minimization
- Joshua Adelman (Fri May 21 2010 - 07:56:06 CDT)
namd-l: Fwd: conf file for coarse grained simulation
- John Stone (Thu Dec 17 2009 - 13:33:34 CST)
- Francesco Pietra (Thu Dec 17 2009 - 12:27:15 CST)
- Francesco Pietra (Thu Dec 17 2009 - 02:34:23 CST)
- Peter Freddolino (Wed Dec 16 2009 - 18:49:13 CST)
- Peter Freddolino (Tue Dec 15 2009 - 10:45:27 CST)
- Francesco Pietra (Tue Dec 15 2009 - 10:01:30 CST)
- Francesco Pietra (Tue Dec 15 2009 - 02:40:55 CST)
namd-l: Generating PSF for 1JNO.pdb chain A
- snoze pa (Fri Apr 14 2006 - 11:40:34 CDT)
namd-l: Gromacs analysis tools for Namd output
- Axel Kohlmeyer (Wed Feb 01 2012 - 11:48:47 CST)
namd-l: Hardware for NAMD / VMD machine
- Axel Kohlmeyer (Fri Jul 03 2009 - 11:56:08 CDT)
namd-l: hBond colvars and patching
- Francesco Pietra (Tue Mar 08 2011 - 00:34:36 CST)
- Peter Freddolino (Mon Mar 07 2011 - 17:08:23 CST)
- Peter Freddolino (Mon Mar 07 2011 - 09:19:20 CST)
- Francesco Pietra (Mon Mar 07 2011 - 00:12:54 CST)
namd-l: How to calculate the C alpha RMSD from NAMD trajectory
- L. Michel Espinoza-Fonseca (Fri Aug 03 2007 - 02:59:02 CDT)
namd-l: How to evaluate the area per lipid and thickness of the lipid bilayer in a membrane-protein system?
- Toni Giorgino (Thu Aug 25 2011 - 07:24:55 CDT)
- Vlad Cojocaru (Thu Aug 25 2011 - 02:14:15 CDT)
namd-l: how to generate transparent figures?
- Jérôme Hénin (Mon Jul 25 2011 - 07:19:40 CDT)
- Dudo (Mon Jul 25 2011 - 05:13:50 CDT)
- Axel Kohlmeyer (Mon Jul 25 2011 - 03:48:10 CDT)
- BIN ZHANG (Sun Jul 24 2011 - 11:31:04 CDT)
namd-l: How to make a disulphide bond
- Charles Danko (Tue May 16 2006 - 13:47:37 CDT)
namd-l: How to play molecule trajectory with VMD?
- Regina Politi (Sun Apr 27 2008 - 07:15:22 CDT)
namd-l: how to use measure hbonds to calculate occupancy of all hbonds in simulation?
- Dong Luo (Wed May 16 2007 - 11:44:01 CDT)
- lnubiofox (Wed May 16 2007 - 09:57:51 CDT)
- Dong Luo (Tue May 15 2007 - 18:27:01 CDT)
namd-l: how to write a command to close vmd in shell script?
- Benjamin Bouvier (Mon Aug 10 2009 - 03:07:38 CDT)
namd-l: is possible to remove the waterbox before running VMD
- Wolbach, Jeffrey P $WOLBACH$ (Thu Mar 09 2006 - 13:45:20 CST)
- griadi_at_utalca.cl (Thu Mar 09 2006 - 12:56:38 CST)
- Michael.Grabe_at_ucsf.edu (Thu Mar 09 2006 - 12:29:00 CST)
- Sterling Paramore (Thu Mar 09 2006 - 11:50:08 CST)
namd-l: LYC Parameter-Topology ?
- Harindar Keer (Wed Nov 19 2003 - 13:01:55 CST)
namd-l: MMTools
- Chathurika Abeyrathne (Wed Aug 17 2011 - 21:07:21 CDT)
- Axel Kohlmeyer (Wed Aug 17 2011 - 20:28:28 CDT)
- Chathurika Abeyrathne (Wed Aug 17 2011 - 19:02:46 CDT)
- Axel Kohlmeyer (Wed Aug 17 2011 - 10:15:50 CDT)
namd-l: Molecule drifts and high average RMSD per residue
- Peter Freddolino (Tue Oct 09 2007 - 09:58:06 CDT)
- Peter Freddolino (Tue Oct 09 2007 - 09:51:07 CDT)
- Peter Freddolino (Tue Oct 09 2007 - 09:45:23 CDT)
namd-l: molecule jumps from one site to the other?
- Eric H. Lee (Mon Jul 13 2009 - 21:33:42 CDT)
namd-l: NAMD ibverbs not working on new cluster
- John Stone (Wed Jan 20 2010 - 12:46:35 CST)
- Carsten Olbrich (Wed Jan 20 2010 - 06:49:43 CST)
namd-l: NAMDEnergy
- Peter Freddolino (Tue Oct 30 2007 - 12:20:16 CDT)
- lily jin (Tue Oct 30 2007 - 12:34:43 CDT)
namd-l: NAMDENERGY: function of 'cutoff' parameter when -pme option is enabled
- Peter Freddolino (Tue May 06 2008 - 00:37:54 CDT)
namd-l: Nanopore simulation
- subhasish chatterjee (Wed Feb 21 2007 - 22:58:18 CST)
- Axel Kohlmeyer (Wed Feb 21 2007 - 12:06:08 CST)
- subhasish chatterjee (Wed Feb 21 2007 - 00:00:07 CST)
- subhasish chatterjee (Tue Feb 20 2007 - 23:54:32 CST)
- Mark Abraham (Tue Feb 20 2007 - 22:14:46 CST)
namd-l: Nanotube Simulations
- Jason Lee (Tue Aug 02 2005 - 14:23:32 CDT)
namd-l: Parameter
- snoze pa (Fri Jul 20 2007 - 14:49:18 CDT)
- Leonardo Trabuco (Fri Jul 20 2007 - 13:21:40 CDT)
namd-l: psfgen tyrosine anion-Fe bond
- Francesco Pietra (Sun Apr 01 2012 - 12:14:27 CDT)
- Francesco Pietra (Sun Apr 01 2012 - 12:03:17 CDT)
namd-l: ptraj
- Nicolas Sapay (Tue Sep 27 2005 - 10:03:18 CDT)
namd-l: question from a tutorial
- JC Gumbart (Thu Jan 20 2011 - 14:29:23 CST)
namd-l: question related to rmsd
- JC Gumbart (Mon May 05 2008 - 16:19:47 CDT)
namd-l: recentering protein in the waterbox
- Gianluca Interlandi (Fri Jun 18 2004 - 18:16:35 CDT)
namd-l: Recentering the box on target molecule and wraping
- Jerome Henin (Mon Sep 11 2006 - 12:05:04 CDT)
namd-l: SASA of PBD files
- sajad falsafi (Sat Sep 03 2011 - 14:38:17 CDT)
namd-l: script
- Luis Gracia (Tue Sep 06 2005 - 13:21:40 CDT)
- LEWYN LI (Tue Sep 06 2005 - 11:12:35 CDT)
namd-l: selection of cholesterol molecules
- Chris Harrison (Wed Nov 02 2011 - 00:06:35 CDT)
namd-l: Simulation configuration file not accesible
- Ajasja LjubetiÄ (Fri Jun 25 2010 - 16:19:34 CDT)
namd-l: solvate a molecule
- Rudra Banerjee (Tue Sep 23 2008 - 22:32:53 CDT)
- Chang, Christopher (Tue Sep 23 2008 - 11:57:58 CDT)
namd-l: Solvation in VMD using Non Standard Solvent System
- Axel Kohlmeyer (Wed Aug 10 2011 - 07:47:35 CDT)
namd-l: STRIDE Algorithm
- L. Michel Espinoza-Fonseca (Mon Sep 10 2007 - 10:43:56 CDT)
namd-l: tcl question
- Blake Charlebois (Thu Jun 16 2005 - 22:32:39 CDT)
namd-l: the patch between segments for multiple chains molecule.
- Leonardo G. Trabuco (Wed Jun 14 2006 - 12:57:42 CDT)
- Moumita Maiti (Wed Jun 14 2006 - 06:21:09 CDT)
- Leonardo G. Trabuco (Fri Jun 02 2006 - 13:09:23 CDT)
namd-l: the patching problem in psfgen
- Leonardo G. Trabuco (Wed Jun 14 2006 - 13:09:36 CDT)
namd-l: too large an area/lipid in POPE bilayers using membrane plugin
- John Stone (Mon Feb 05 2007 - 14:52:48 CST)
- Richard Law (Mon Feb 05 2007 - 12:49:07 CST)
namd-l: Truncated Octahedron for VMD and NAMD simulation
- Yinglong Miao (Fri May 16 2008 - 09:42:20 CDT)
- Vlad Cojocaru (Fri May 16 2008 - 03:29:41 CDT)
- George Madalin Giambasu (Thu May 15 2008 - 15:23:51 CDT)
namd-l: Truncated Octahedron for VMD and NAMDsimulation
- Bishop, Thomas C (Fri May 16 2008 - 13:39:16 CDT)
namd-l: Turning off forces in VMD
- Marc Baaden (Mon Jan 09 2006 - 01:01:03 CST)
namd-l: TXT program editor
- Giovanni Bellesia (Thu Aug 28 2008 - 16:21:03 CDT)
namd-l: VMD Command
- Viswanadham Sridhara (Tue Mar 21 2006 - 12:31:23 CST)
namd-l: volume from VMD and NAMD different?
- Jim Phillips (Fri Aug 05 2005 - 17:46:25 CDT)
- Brian Bennion (Fri Aug 05 2005 - 17:38:27 CDT)
- Jim Phillips (Fri Aug 05 2005 - 17:34:45 CDT)
namd-l: what does "patch" mean?
- dimka (Sun Mar 19 2006 - 23:33:21 CST)
namd-l: wrapping problem
- Ramya Gamini (Wed Dec 01 2010 - 13:45:25 CST)
- Ramya Gamini (Wed Dec 01 2010 - 11:37:26 CST)
namd-l: Writing pdb file.. easier way?
- Justin Gullingsrud (Tue Nov 23 2004 - 14:45:15 CST)
- griadi_at_utalca.cl (Tue Nov 23 2004 - 12:44:03 CST)
- Jérôme Hénin (Thu Nov 18 2004 - 17:28:36 CST)
namd-l; question about psfgen (param for CT1?)
- Margaret Shun Cheung (Thu Apr 06 2006 - 15:53:20 CDT)
namd2 unable to find bond.
- Dave Arias (NelsonDa) (Wed Mar 07 2012 - 14:58:39 CST)
namd2.7b1, tip4p, and dummies
- Edward Lyman (Wed Sep 30 2009 - 01:36:06 CDT)
NAMDEnergy
- John Stone (Wed Jun 10 2009 - 09:47:29 CDT)
- Andres Morales N (Wed Jun 10 2009 - 08:59:51 CDT)
- Peter Freddolino (Sun Jun 07 2009 - 16:41:54 CDT)
- Eric H. Lee (Sun Jun 07 2009 - 15:37:30 CDT)
- Andres Morales N (Sun Jun 07 2009 - 15:23:35 CDT)
- Andres Morales N (Sun Jun 07 2009 - 15:24:33 CDT)
- Peter Freddolino (Mon May 11 2009 - 12:37:07 CDT)
- BIN ZHANG (Mon May 11 2009 - 12:29:37 CDT)
- Peter Freddolino (Thu May 07 2009 - 22:45:00 CDT)
- BIN ZHANG (Thu May 07 2009 - 17:26:23 CDT)
- lily jin (Tue Oct 30 2007 - 12:00:57 CDT)
- Peter Freddolino (Tue Jul 24 2007 - 13:26:29 CDT)
- virginia miguel (Tue Jul 24 2007 - 13:18:37 CDT)
NAMDENERGY analysis
- Axel Kohlmeyer (Thu Oct 04 2007 - 15:34:32 CDT)
- Peter Freddolino (Thu Oct 04 2007 - 14:18:05 CDT)
- Peter Freddolino (Thu Oct 04 2007 - 14:28:18 CDT)
- Narender Singh Maan (Thu Oct 04 2007 - 13:34:16 CDT)
namdenergy and simulation with amber ff
- Peter Freddolino (Mon Aug 04 2008 - 11:50:31 CDT)
- Peter Freddolino (Fri Aug 01 2008 - 08:24:36 CDT)
- Alan (Fri Aug 01 2008 - 02:05:23 CDT)
NAMDenergy calculation
- shome sankar bhunia (Fri Mar 25 2011 - 08:28:50 CDT)
NAMDENERGY crashing repeatedly
- Chandra Ramananjara (Tue Aug 05 2008 - 18:49:40 CDT)
- Peter Freddolino (Tue Aug 05 2008 - 16:26:52 CDT)
- Chandra Ramananjara (Tue Aug 05 2008 - 09:27:12 CDT)
namdenergy missing for -dispdev none (vmd 1.8.6)
- Axel Kohlmeyer (Fri May 15 2009 - 13:27:22 CDT)
- Peter Freddolino (Fri May 15 2009 - 12:43:50 CDT)
- Thomas C. Bishop (Fri May 15 2009 - 12:37:13 CDT)
NAMDEnergy Plugin
- Andres Morales N (Tue Jul 28 2009 - 00:34:43 CDT)
- Peter Freddolino (Mon Jul 10 2006 - 00:08:12 CDT)
- Peter Freddolino (Mon Jul 10 2006 - 00:02:33 CDT)
- Chandra Ramananjara (Sun Jul 09 2006 - 23:47:10 CDT)
NAMDenergy plugin_VMD_van der Waal interactions
- Bruno Luís Pinto de Oliveira (Wed Feb 08 2012 - 12:40:57 CST)
- Bruno Luís Pinto de Oliveira (Wed Feb 08 2012 - 10:05:41 CST)
- Bruno Luís Pinto de Oliveira (Tue Feb 07 2012 - 09:20:23 CST)
namdenergy problem
- Peter Freddolino (Wed Dec 01 2010 - 20:35:52 CST)
- Francesco Oteri (Wed Dec 01 2010 - 06:23:23 CST)
- Lixia Jin Day (Tue Jan 08 2008 - 14:30:29 CST)
- Peter Freddolino (Tue Jan 08 2008 - 14:52:46 CST)
- Peter Freddolino (Tue Oct 02 2007 - 18:55:14 CDT)
- Peter Freddolino (Tue Oct 02 2007 - 18:14:14 CDT)
- Narender Singh Maan (Tue Oct 02 2007 - 14:53:47 CDT)
NAMDENERGY: function of 'cutoff' parameter when -pme option is enabled
- Ghalib Bello (Mon May 05 2008 - 23:02:45 CDT)
namdenergy: how set "runextcommand"?
- Peter Freddolino (Sat Mar 28 2009 - 19:36:45 CDT)
- Sebastian Stolzenberg (Sat Mar 28 2009 - 18:59:33 CDT)
NAMDenergy: how to override a FATAL ERROR
- Peter Freddolino (Tue Apr 01 2008 - 10:55:05 CDT)
- Peter Freddolino (Sun Mar 30 2008 - 16:02:30 CDT)
- Neelanjana Sengupta (Sun Mar 30 2008 - 15:51:45 CDT)
- Peter Freddolino (Sun Mar 30 2008 - 15:02:58 CDT)
- Neelanjana Sengupta (Sun Mar 30 2008 - 14:50:29 CDT)
NAMDenergy: problems on changing VMD version/platform
- Neelanjana Sengupta (Mon Jul 06 2009 - 05:17:30 CDT)
- Axel Kohlmeyer (Sun Jul 05 2009 - 13:58:50 CDT)
- Axel Kohlmeyer (Sat Jul 04 2009 - 11:54:50 CDT)
- Neelanjana Sengupta (Sat Jul 04 2009 - 11:17:44 CDT)
namdenergy: writepdb failed
- Peter Freddolino (Sun Jun 20 2010 - 19:09:47 CDT)
- Axel Kohlmeyer (Sun Jun 20 2010 - 08:25:03 CDT)
- Neelanjana Sengupta (Sun Jun 20 2010 - 06:27:02 CDT)
namdplot 1.0
- John Stone (Wed Jun 10 2009 - 23:03:34 CDT)
- Thomas C. Bishop (Wed Jun 10 2009 - 22:14:11 CDT)
Naming in XmGrace
- Teletchéa Stéphane (Thu Nov 20 2003 - 11:16:41 CST)
- John Stone (Thu Nov 20 2003 - 09:51:04 CST)
- Teletchéa Stéphane (Thu Nov 20 2003 - 06:53:21 CST)
- Teletchéa Stéphane (Thu Nov 20 2003 - 02:54:12 CST)
- Justin Gullingsrud (Wed Nov 19 2003 - 11:21:08 CST)
- Teletchéa Stéphane (Wed Nov 19 2003 - 11:01:41 CST)
- Justin Gullingsrud (Tue Nov 18 2003 - 11:26:41 CST)
- Teletchéa Stéphane (Tue Nov 18 2003 - 10:39:08 CST)
- John Stone (Tue Nov 18 2003 - 10:05:04 CST)
- himanshu chandola (Tue Nov 18 2003 - 20:09:09 CST)
- Teletchéa Stéphane (Tue Nov 18 2003 - 07:03:10 CST)
Nanopore simulation
- subhasish chatterjee (Tue Feb 20 2007 - 21:58:54 CST)
Nanotech Ventures 2005 - Tokyo & California
- NSTI Nanotech Ventures (Thu Dec 16 2004 - 00:50:00 CST)
Nanotube Simulations
- Jordi Cohen (Tue Aug 02 2005 - 14:41:03 CDT)
- Gaurav Sharma (Tue Aug 02 2005 - 13:56:15 CDT)
- John Stone (Tue Aug 02 2005 - 12:34:58 CDT)
- Gaurav Sharma (Tue Aug 02 2005 - 08:51:14 CDT)
Native contacts trajectory tool available
- Toni Giorgino (Tue Jul 13 2010 - 14:09:49 CDT)
Native OSX VMD version for 10.2
- John Stone (Wed Oct 02 2002 - 13:18:51 CDT)
- John Stone (Mon Sep 23 2002 - 15:22:38 CDT)
Natural WeightL0SS Solution
- ltrabuco_at_ks.uiuc.edu (Wed Jul 15 2009 - 17:35:35 CDT)
near clip
- Schreiner Eduard (Wed Mar 25 2009 - 23:53:49 CDT)
- John Stone (Fri Mar 20 2009 - 14:53:20 CDT)
- Leandro Martínez (Fri Mar 20 2009 - 14:28:53 CDT)
- John Stone (Fri Mar 20 2009 - 11:52:39 CDT)
- Leandro Martínez (Fri Mar 20 2009 - 07:48:51 CDT)
Nearest neighbor selection
- Richard Swenson (Tue Jun 12 2007 - 15:23:31 CDT)
- John Stone (Tue Jun 12 2007 - 10:36:02 CDT)
- Richard Swenson (Mon Jun 11 2007 - 10:23:57 CDT)
Need a few testers for Linux version of VMD 1.8.3...
- Axel Kohlmeyer (Fri Jun 11 2004 - 15:17:13 CDT)
- Luca Mollica (Fri Jun 11 2004 - 12:08:15 CDT)
- John Stone (Fri Jun 11 2004 - 11:10:15 CDT)
- Jerry Ebalunode (Fri Jun 11 2004 - 09:56:51 CDT)
- John Stone (Fri Jun 11 2004 - 10:33:55 CDT)
need convert when using VMD to make a movie under Mac
- John Stone (Tue Jul 21 2009 - 01:13:44 CDT)
- Eric H. Lee (Mon Jul 20 2009 - 18:34:53 CDT)
- Yongmei Pan (Mon Jul 20 2009 - 17:49:29 CDT)
Need GAMESS logfiles for testing VMD's new QM interface
- saam (Thu Jul 09 2009 - 11:58:08 CDT)
Need Guidance with pbctools
- Angelo Rossi (Sun Jul 12 2009 - 08:02:21 CDT)
- Olaf Lenz (Sun Jul 12 2009 - 03:00:58 CDT)
- Angelo Rossi (Sat Jul 11 2009 - 13:47:11 CDT)
need help
- Bhaskar Jyoti Borah (Tue Jul 10 2007 - 01:19:58 CDT)
- Axel Kohlmeyer (Mon Jul 09 2007 - 09:25:03 CDT)
- Bhaskar Jyoti Borah (Mon Jul 09 2007 - 05:25:50 CDT)
need help - hardware stereo on a Windows PC
- John Stone (Fri Apr 13 2001 - 00:21:10 CDT)
- Kristian Mueller (Thu Apr 12 2001 - 11:41:36 CDT)
Need help about hbond and saltbridge
- Leonardo Trabuco (Sat May 19 2007 - 17:14:18 CDT)
- s104fendy (Fri May 18 2007 - 03:07:05 CDT)
Need help sleeping? Read this!
- Kendra Baker (Thu Aug 16 2007 - 20:39:47 CDT)
need HELP with psf file
- John Stone (Mon Apr 10 2006 - 23:55:53 CDT)
- Praveen Madala (Mon Apr 10 2006 - 22:23:30 CDT)
Need helps about connecting phantom with VMD through VRPN
- John Stone (Mon Mar 19 2007 - 10:08:54 CDT)
- preeda (Mon Mar 19 2007 - 09:30:43 CDT)
need tcl help, please
- Irene Newhouse (Fri Nov 21 2008 - 14:36:07 CST)
- Peter Freddolino (Fri Nov 21 2008 - 13:22:04 CST)
- Irene Newhouse (Fri Nov 21 2008 - 12:57:03 CST)
Need testers for VMD/Tachyon volumetric coloring feature :-)
- John Stone (Wed May 27 2009 - 14:37:59 CDT)
need urgent help
- Justin Gullingsrud (Sat Aug 30 2003 - 19:30:56 CDT)
- Ioana Cozmuta (Fri Aug 29 2003 - 23:24:44 CDT)
- Justin Gullingsrud (Fri Aug 29 2003 - 23:04:00 CDT)
- Ioana Cozmuta (Thu Aug 28 2003 - 13:04:30 CDT)
NetCDF plugin
- Axel Kohlmeyer (Tue Sep 20 2011 - 18:59:11 CDT)
- Alexandr Kornev (Tue Sep 20 2011 - 17:55:59 CDT)
never mind .. got it
- Samuel Flores (Thu May 25 2006 - 21:02:47 CDT)
New "surf" calculations in VMD 1.9.1 beta
- John Stone (Wed Jan 18 2012 - 11:01:13 CST)
- Axel Kohlmeyer (Wed Jan 18 2012 - 08:00:54 CST)
- Ajasja LjubetiÄ (Wed Jan 18 2012 - 07:17:32 CST)
- FX (Wed Jan 18 2012 - 06:12:08 CST)
New AMBER 7 file reader plugin, testers needed :-)
- MengJuei Hsieh (Fri Nov 22 2002 - 19:58:10 CST)
- John Stone (Wed Nov 20 2002 - 13:23:32 CST)
New and updated plugins for VMD 1.8.2 posted
- John Stone (Wed Mar 24 2004 - 15:17:29 CST)
New and updated VMD plugins posted (update 4, 7/8/2004)
- John Stone (Thu Jul 08 2004 - 11:08:11 CDT)
New Athlon64/Opteron AMD64/EMT64 test version...
- John Stone (Tue Sep 14 2004 - 21:35:21 CDT)
- Jerry Ebalunode (Tue Sep 14 2004 - 13:48:44 CDT)
- John Stone (Tue Sep 14 2004 - 16:49:29 CDT)
New BioCoRE server released
- Robert Brunner (Wed Aug 17 2005 - 11:59:52 CDT)
New Cartoon representation problem
- John Stone (Wed Jan 06 2010 - 12:49:18 CST)
- Kassem Ghaddar (Tue Jan 05 2010 - 04:09:16 CST)
new color scale
- John Stone (Tue May 06 2003 - 13:06:01 CDT)
- Rukman Hertadi (Tue May 06 2003 - 00:44:46 CDT)
new coordinates
- Eduard Schreiner (Thu Oct 06 2005 - 06:18:01 CDT)
- Anna Karawajczyk (Thu Oct 06 2005 - 02:57:55 CDT)
- Anna Karawajczyk (Thu Oct 06 2005 - 02:35:09 CDT)
New crystallography plugin
- Dan Michael O. HeggÃ¸ (Wed May 09 2012 - 17:33:04 CDT)
- Dan Michael O. HeggÃ¸ (Wed May 09 2012 - 16:31:33 CDT)
new machine problems.
- John Stone (Tue Aug 14 2007 - 14:49:09 CDT)
- Fred Moore (Mon Aug 13 2007 - 17:58:46 CDT)
new macs out
- John Stone (Wed Oct 19 2005 - 15:36:58 CDT)
- Eugen Leitl (Wed Oct 19 2005 - 15:10:22 CDT)
New Molecule (or Load Data) resets viewpoint of Display. Why?
- John Stone (Wed Mar 07 2007 - 16:41:04 CST)
- Rob (Tue Mar 06 2007 - 03:28:56 CST)
- John Stone (Mon Mar 05 2007 - 17:06:29 CST)
- Axel Kohlmeyer (Mon Mar 05 2007 - 05:24:25 CST)
- Rob (Sun Mar 04 2007 - 21:27:14 CST)
New Multi-platform Surface and volume Calculator
- João Ribeiro (Mon Jul 04 2011 - 16:06:53 CDT)
New NAMD version 2011-03-03 uses
- Ada Zhan (Fri Apr 22 2011 - 16:04:52 CDT)
- Ada Zhan (Fri Apr 22 2011 - 13:35:30 CDT)
NEW New
- John Stone (Thu Aug 06 2009 - 10:31:36 CDT)
- Christian Wohlschlager (Thu Aug 06 2009 - 07:44:37 CDT)
new problem
- John Stone (Tue May 26 2009 - 11:05:07 CDT)
New Release: Planetsweep Revolutionizes Internet Browsing
- cyclone_at_team.planetsweep.com (Mon Apr 09 2001 - 13:13:23 CDT)
New Sharp 3D Notebook Available with Linux
- Eugen Leitl (Tue Mar 22 2005 - 05:35:19 CST)
New stage?
- John Stone (Wed Feb 11 2004 - 18:57:25 CST)
- Jeff Hoch (Tue Feb 10 2004 - 08:30:02 CST)
New test version posted...
- John Stone (Fri May 05 2006 - 19:39:47 CDT)
new user animation question
- Mauricio Carrillo Tripp (Tue Oct 09 2001 - 20:01:20 CDT)
- John Stone (Fri Oct 05 2001 - 12:49:10 CDT)
- tom keyes (Thu Oct 04 2001 - 13:01:01 CDT)
- B. Bennion (Thu Oct 04 2001 - 10:37:32 CDT)
- tom keyes (Thu Oct 04 2001 - 09:44:41 CDT)
- B. Bennion (Thu Oct 04 2001 - 00:47:08 CDT)
- tom keyes (Wed Oct 03 2001 - 16:37:49 CDT)
New User of VMD
- John Stone (Wed Jun 18 2003 - 13:43:53 CDT)
- Shantipriya Tenneti (Wed Jun 18 2003 - 12:37:09 CDT)
New user questions
- Michele Andrews - Contractor (Thu Feb 13 2003 - 14:52:35 CST)
- John Stone (Thu Feb 13 2003 - 13:54:00 CST)
- Justin Gullingsrud (Thu Feb 13 2003 - 12:29:00 CST)
- Michele Andrews - Contractor (Thu Feb 13 2003 - 11:11:16 CST)
new user: how to load output file
- John Stone (Tue Sep 07 2004 - 16:27:38 CDT)
- Paul Christopher Millett (Sun Sep 05 2004 - 12:04:40 CDT)
New version of CatDCD available
- Justin Gullingsrud (Thu Nov 20 2003 - 15:36:57 CST)
new version of VMD
- Sergei Izrailev (Thu Apr 30 1998 - 18:59:15 CDT)
New version of VMD movie script/plugin available
- John Stone (Wed Mar 13 2002 - 12:21:54 CST)
- John Stone (Wed Mar 13 2002 - 10:34:28 CST)
- John Stone (Wed Mar 13 2002 - 09:34:12 CST)
- Adrian E. Roitberg (Wed Mar 13 2002 - 07:22:32 CST)
- Alan Wilter Sousa da Silva (Wed Mar 13 2002 - 07:58:33 CST)
- John Stone (Wed Mar 13 2002 - 00:04:10 CST)
New version very slow?
- Dallas Warren (Thu Jan 08 2004 - 20:17:17 CST)
- Dallas Warren (Thu Dec 11 2003 - 00:53:38 CST)
- Dallas Warren (Wed Dec 10 2003 - 22:21:49 CST)
- John Stone (Wed Dec 10 2003 - 00:07:59 CST)
- Dallas Warren (Tue Dec 09 2003 - 19:45:09 CST)
New version very slow? Fixed also...
- Patrick Ladam (Fri Jan 09 2004 - 09:19:40 CST)
New version very slow?... me too
- John Stone (Wed Dec 10 2003 - 09:49:14 CST)
New VMD 1.8 alpha 20 MacOS X native OpenGL test version...
- John Stone (Sat Jul 13 2002 - 22:39:49 CDT)
New VMD 1.8.6b15 installer for Windows XP x64...
- John Stone (Wed Mar 28 2007 - 18:17:29 CDT)
New VMD CVS tree location, update your aliases...
- John Stone (Wed Jul 23 2003 - 14:23:55 CDT)
New VMD development pages
- John Stone (Mon Sep 27 1999 - 10:42:25 CDT)
New VMD User's Guide available
- Sergei Izrailev (Wed Jul 30 1997 - 15:33:32 CDT)
- Sergei Izrailev (Tue Jul 29 1997 - 13:08:25 CDT)
New vmd Windows version crash
- John Stone (Wed May 20 2009 - 20:57:19 CDT)
- MyLinkka (Wed May 20 2009 - 07:20:14 CDT)
- John Stone (Wed May 20 2009 - 06:55:12 CDT)
- John Stone (Wed May 20 2009 - 06:59:46 CDT)
- MyLinkka (Wed May 20 2009 - 06:28:10 CDT)
- MyLinkka (Wed May 20 2009 - 05:29:22 CDT)
- John Stone (Tue May 19 2009 - 21:08:44 CDT)
- John Stone (Tue May 19 2009 - 21:02:57 CDT)
- MyLinkka (Tue May 19 2009 - 05:14:34 CDT)
New VMD-L subject lines...
- John Stone (Tue Jul 22 2003 - 16:53:05 CDT)
newbie issues
- Axel Kohlmeyer (Tue Sep 02 2008 - 14:10:19 CDT)
- markus mooslechner (Tue Sep 02 2008 - 13:39:19 CDT)
Newbie Questions
- Peter Freddolino (Sun Jul 06 2008 - 22:06:53 CDT)
- Paul Dennis Simonson (Sun Jul 06 2008 - 21:15:13 CDT)
NewCartoon and mol2 files
- John Stone (Thu Jun 01 2006 - 12:36:29 CDT)
- John Stone (Wed May 31 2006 - 10:55:47 CDT)
- David Chalmers (Wed May 31 2006 - 06:11:33 CDT)
NewCartoon not among Drawing methods
- John Stone (Wed Jun 10 2009 - 10:44:13 CDT)
- Stefano Meliga (Wed Jun 10 2009 - 10:36:41 CDT)
- Stefano Meliga (Wed Jun 10 2009 - 10:24:26 CDT)
- Stefano Meliga (Wed Jun 10 2009 - 10:04:09 CDT)
- John Stone (Wed Jun 10 2009 - 09:49:59 CDT)
- John Stone (Wed Jun 10 2009 - 10:06:53 CDT)
- Stefano Meliga (Wed Jun 10 2009 - 08:48:26 CDT)
NewCartoons / STRIDE problem
- Samuel Coulbourn Flores èŠ±å±± (Fri May 16 2008 - 16:06:17 CDT)
- John Stone (Fri May 16 2008 - 14:55:56 CDT)
- Samuel Coulbourn Flores èŠ±å±± (Sat May 10 2008 - 18:16:21 CDT)
NewRibbons/NewCartoon problem due to missing CUDA ?
- Axel Kohlmeyer (Thu Feb 02 2012 - 07:52:24 CST)
- thereal sisterdot (Thu Feb 02 2012 - 05:49:34 CST)
- John Stone (Tue Jan 31 2012 - 15:47:00 CST)
- Ajasja LjubetiÄ (Tue Jan 31 2012 - 08:32:01 CST)
- Axel Kohlmeyer (Tue Jan 31 2012 - 07:18:10 CST)
- thereal sisterdot (Mon Jan 30 2012 - 05:27:33 CST)
Nightly VMD web updates running again...
- John Stone (Tue Aug 03 2004 - 10:20:37 CDT)
NMR module in VMD ?
- Patrick Ladam (Tue Sep 02 2003 - 05:00:41 CDT)
NMWiz - a new VMD plugin
- Ahmet Bakan (Tue Apr 12 2011 - 11:51:36 CDT)
No 'Primary File Type' in Load menu (v1.8a10 on MacOSX)
- John Stone (Thu Jun 20 2002 - 10:12:40 CDT)
- Christian Simon (Thu Jun 20 2002 - 08:01:20 CDT)
No bonds
- John Stone (Thu Aug 25 2005 - 18:11:57 CDT)
- Jindal Shah (Wed Aug 24 2005 - 11:35:11 CDT)
- John Stone (Wed Aug 24 2005 - 10:21:05 CDT)
- Jindal Shah (Wed Aug 24 2005 - 10:06:09 CDT)
no convergence in align
- John Stone (Fri Feb 29 2008 - 12:39:20 CST)
- Jorgen Simonsen (Fri Feb 29 2008 - 12:15:49 CST)
- John Stone (Fri Feb 29 2008 - 11:07:38 CST)
- John Stone (Fri Feb 29 2008 - 10:05:34 CST)
- Axel Kohlmeyer (Fri Feb 29 2008 - 09:25:23 CST)
- Jorgen Simonsen (Fri Feb 29 2008 - 07:03:18 CST)
No Display when running vmd 1.3
- John Stone (Thu May 27 1999 - 16:00:02 CDT)
- Charles Schwieters (Thu May 27 1999 - 16:03:58 CDT)
- Dr. David Gregory (Fri May 28 1999 - 08:31:57 CDT)
- Dr. David Gregory (Thu May 27 1999 - 14:53:51 CDT)
no main window
- Eckhart Guthöhrlein (Tue Aug 24 2004 - 09:25:07 CDT)
- John Stone (Tue Aug 24 2004 - 09:18:44 CDT)
- J. Rui Rodrigues (Tue Aug 24 2004 - 06:21:44 CDT)
- Eckhart Guthöhrlein (Tue Aug 24 2004 - 06:11:06 CDT)
no main window with ATI openGL
- Eduard Schreiner (Wed Oct 04 2006 - 08:05:37 CDT)
- Olaf Lenz (Wed Oct 04 2006 - 08:11:02 CDT)
- Loison Claire (Wed Oct 04 2006 - 05:15:04 CDT)
No prescr1ption? No problem!
- Buford Greene (Sat Aug 25 2007 - 09:27:00 CDT)
- Ferdinand Benton (Sun Aug 19 2007 - 10:50:20 CDT)
No sequence tool for DNA
- John Stone (Tue Jul 23 2002 - 22:01:06 CDT)
- Stéphane Teletchéa (Mon Jul 22 2002 - 04:53:57 CDT)
No stereo display support in Windows Vista...
- John Stone (Tue Aug 08 2006 - 11:26:07 CDT)
- Marc Baaden (Tue Aug 08 2006 - 02:11:28 CDT)
- John Stone (Mon Aug 07 2006 - 23:38:02 CDT)
- Warren DeLano (Mon Aug 07 2006 - 22:06:10 CDT)
- John Stone (Mon Aug 07 2006 - 12:52:00 CDT)
No stereo mode in vmd -dispdev none ??
- John Stone (Thu Nov 07 2002 - 16:46:02 CST)
- Marc Baaden (Wed Nov 06 2002 - 07:15:03 CST)
no subject
- dimka (Mon Sep 18 2006 - 13:50:55 CDT)
- tnels_at_sfu.ca (Fri Sep 15 2006 - 20:18:21 CDT)
- Gadi Oron (Sun Apr 18 2004 - 03:50:37 CDT)
no transparency on newest iMacs
- John Stone (Fri Oct 05 2007 - 01:35:41 CDT)
- Christoph Weber (Thu Oct 04 2007 - 15:56:56 CDT)
- John Stone (Wed Oct 03 2007 - 19:12:40 CDT)
- Christoph Weber (Wed Oct 03 2007 - 19:05:21 CDT)
NOC (current version 1.5.2.10) a new, free program for protein structure model-building, visualization, validation and analysis
- Chenmengen (Tue Mar 29 2005 - 19:07:52 CST)
NOC 3.0 is released
- chenmengen (Wed May 16 2007 - 14:01:37 CDT)
Non-cuda version of VMD on Linux?
- Axel Kohlmeyer (Sun May 22 2011 - 05:17:34 CDT)
- Ismail, Mohd F. (Sun May 22 2011 - 02:22:23 CDT)
- John Stone (Sat May 21 2011 - 22:22:42 CDT)
- Ismail, Mohd F. (Sat May 21 2011 - 22:02:01 CDT)
Non-protein Multiple-Frame File
- Axel Kohlmeyer (Mon May 24 2004 - 08:59:05 CDT)
- Anthony Ivetac (Mon May 24 2004 - 06:44:54 CDT)
Non-serious query
- DongHoon Chung (Thu Mar 04 2004 - 18:16:23 CST)
- John Stone (Thu Mar 04 2004 - 10:54:22 CST)
- Sanjeev B.S. (Thu Mar 04 2004 - 00:11:31 CST)
- John Stone (Wed Mar 03 2004 - 13:20:30 CST)
- Jérôme Hénin (Wed Mar 03 2004 - 12:03:13 CST)
- Sanjeev B.S. (Wed Mar 03 2004 - 11:29:29 CST)
- Brian Bennion (Wed Mar 03 2004 - 11:23:33 CST)
- Sanjeev B.S. (Wed Mar 03 2004 - 09:54:34 CST)
non-standard residue
- John Stone (Mon May 28 2007 - 15:50:41 CDT)
- Nathan C. Rockwell (Fri May 25 2007 - 11:20:57 CDT)
- Stern, Julie (Thu May 24 2007 - 21:15:31 CDT)
nonbond interaction energy
- Peter Freddolino (Fri May 04 2007 - 13:23:48 CDT)
- lanhua (Fri May 04 2007 - 12:14:55 CDT)
nonstandard solvate + cyclic peptides in explicit DMSO box + gofr
- Axel Kohlmeyer (Thu Jul 26 2007 - 11:48:08 CDT)
- John Stone (Thu Jul 26 2007 - 11:33:52 CDT)
- Peter Freddolino (Thu Jul 26 2007 - 07:41:24 CDT)
- sfrickenhaus (Thu Jul 26 2007 - 04:45:13 CDT)
Normal mode analysis
- John Stone (Tue Apr 19 2005 - 16:45:19 CDT)
- David Poger (Tue Apr 19 2005 - 08:02:57 CDT)
Normal mode analysis in VMD
- Vani Krishna (Sun Nov 12 2006 - 22:00:20 CST)
Normal VMD crashed when pdb load but Debug mode works
- Axel Kohlmeyer (Mon Oct 08 2007 - 11:41:09 CDT)
- John Stone (Mon Oct 08 2007 - 11:48:43 CDT)
- weilin Zhang (Mon Oct 08 2007 - 09:45:50 CDT)
Normalization of RDFs in gofr plugin
- Axel Kohlmeyer (Tue Jun 28 2011 - 18:08:31 CDT)
- gaborekt_at_duq.edu (Tue Jun 28 2011 - 16:05:59 CDT)
- Axel Kohlmeyer (Tue Jun 28 2011 - 13:06:49 CDT)
- gaborekt_at_duq.edu (Tue Jun 28 2011 - 12:34:37 CDT)
Not able to read a restart file from AMBER
- MengJuei Hsieh (Mon Jul 15 2002 - 15:48:53 CDT)
- Stéphane Teletchéa (Mon Jul 15 2002 - 06:17:26 CDT)
Not calculate bonds by default.
- Axel Kohlmeyer (Thu Mar 10 2011 - 19:08:44 CST)
- Eric Germaneau (Fri Mar 11 2011 - 07:12:04 CST)
not to display atoms in certain region
- Axel Kohlmeyer (Fri Jun 24 2011 - 16:09:33 CDT)
- John Stone (Fri Jun 24 2011 - 15:45:31 CDT)
- pouyan farzinpor (Fri Jun 24 2011 - 15:29:11 CDT)
- John Stone (Fri Jun 24 2011 - 15:01:06 CDT)
- pouyan farzinpor (Fri Jun 24 2011 - 14:53:03 CDT)
Note about VMD 1.8.1 on on MacOS X 10.1.x....
- John Stone (Mon Jul 07 2003 - 17:20:21 CDT)
Note to VMD-L about posting attachments etc...
- John Stone (Mon Jan 26 2009 - 15:58:53 CST)
Nothing happens with Window's install
- John Stone (Tue Feb 05 2002 - 12:50:45 CST)
- John Stone (Tue Feb 05 2002 - 11:33:43 CST)
- Keith Oxenrider (Tue Feb 05 2002 - 11:25:23 CST)
Novint Falcon
- Axel Kohlmeyer (Tue Oct 19 2010 - 08:19:49 CDT)
- Christian Wohlschlager (Tue Oct 19 2010 - 07:22:21 CDT)
Novint Falcon in VMD - help with setup
- Filip Persson (Wed Jul 20 2011 - 05:12:44 CDT)
ntdll.dll problem when changing drawing methods
- Paul Van Allsburg (Tue Jan 31 2006 - 10:53:24 CST)
- John Stone (Mon Jan 30 2006 - 16:32:10 CST)
- Paul Van Allsburg (Mon Jan 30 2006 - 14:06:54 CST)
ntermolecular atomselection
- Axel Kohlmeyer (Thu Jul 26 2007 - 11:35:46 CDT)
- Nuno Loureiro Ferreira (Thu Jul 26 2007 - 03:23:25 CDT)
- Robert Wohlhueter (Thu Jul 26 2007 - 00:27:38 CDT)
Nucleic acid topology file for PSF generation
- Jim Parker (Fri Dec 04 2009 - 22:13:50 CST)
- Schreiner Eduard (Thu Dec 03 2009 - 23:01:58 CST)
- Jim Parker (Thu Dec 03 2009 - 21:56:00 CST)
number of frames in pdb file?
- andrea spitaleri (Fri May 26 2006 - 03:01:41 CDT)
- Samuel Flores (Thu May 25 2006 - 20:08:23 CDT)
Number of Frames in VMD
- Axel Kohlmeyer (Fri Feb 23 2007 - 09:05:15 CST)
- Rita Cassia (Fri Feb 23 2007 - 07:48:39 CST)
Number of H bond formation in VMD
- Axel Kohlmeyer (Fri Jan 29 2010 - 09:18:32 CST)
- snoze pa (Thu Jan 28 2010 - 17:32:10 CST)
Number of Hydrogen Bonds among Water an Protein
- Mert Gür (Tue Jan 26 2010 - 15:31:45 CST)
- Axel Kohlmeyer (Tue Jan 26 2010 - 15:39:18 CST)
- Axel Kohlmeyer (Mon Jan 25 2010 - 08:55:05 CST)
- Mert Gür (Mon Jan 25 2010 - 07:50:25 CST)
- Leonardo Trabuco (Sun Jan 24 2010 - 16:42:01 CST)
- Mert Gür (Sun Jan 24 2010 - 14:25:52 CST)
- Mert Gür (Sun Jan 24 2010 - 14:00:32 CST)
- Leonardo Trabuco (Sun Jan 24 2010 - 13:22:31 CST)
- Mert Gür (Sun Jan 24 2010 - 13:17:09 CST)
number of waters around a protein
- L. Michel Espinoza-Fonseca (Mon Feb 13 2006 - 06:05:23 CST)
numbonds
- Axel Kohlmeyer (Tue Aug 28 2007 - 12:05:46 CDT)
- Eduard Schreiner (Tue Aug 28 2007 - 10:54:20 CDT)
Numeric Library of Python for VMD 1.8.7
- Yue Yang (Thu Feb 18 2010 - 00:08:41 CST)
- John Stone (Thu Feb 18 2010 - 00:11:12 CST)
- Axel Kohlmeyer (Wed Feb 17 2010 - 23:36:39 CST)
- Yue Yang (Wed Feb 17 2010 - 22:22:27 CST)
numeric python
- Justin Gullingsrud (Mon Mar 08 2004 - 09:49:27 CST)
- Brian Bennion (Mon Mar 08 2004 - 10:07:17 CST)
- John Stone (Mon Mar 08 2004 - 10:17:18 CST)
- Dmitry Kovalsky (Mon Mar 08 2004 - 05:01:39 CST)
numerical output for SURF?
- John Stone (Wed Sep 10 2003 - 15:42:33 CDT)
- suzie.k.hight.1 (Wed Sep 10 2003 - 13:24:15 CDT)
NuVision glasses
- Grischa Meyer (Mon Sep 11 2006 - 19:41:25 CDT)
nvidia 6106 kernel drivers and opengl
- John Stone (Tue Jul 13 2004 - 21:00:36 CDT)
- Jerry Ebalunode (Tue Jul 13 2004 - 20:00:21 CDT)
nvidia driver
- John Stone (Wed Oct 01 2003 - 14:08:32 CDT)
- Alan Wilter Sousa da Silva (Tue Sep 30 2003 - 09:30:48 CDT)
- John Stone (Tue Sep 30 2003 - 10:04:21 CDT)
nVidia Driver 7664 for Linux
- John Stone (Thu Jun 02 2005 - 13:27:02 CDT)
- Warren DeLano (Thu Jun 02 2005 - 11:41:38 CDT)
nvidia drivers and 64bit OS VMD/PYMOL
- John Stone (Mon Oct 24 2005 - 13:18:36 CDT)
- asimplefunguy_at_netscape.net (Mon Oct 24 2005 - 09:10:23 CDT)
NVidia GeForce 3D Vision
- John Stone (Tue May 19 2009 - 20:28:10 CDT)
- Christoph Weber (Tue May 19 2009 - 12:38:08 CDT)
NVidia GeForce issues on PCs (article URL)
- John Stone (Tue Feb 05 2002 - 14:25:30 CST)
Nvidia graphics card with VMD
- Berit Hinnemann (Fri Oct 20 2006 - 07:13:42 CDT)
NVidia OpenGL HOWTO for Linux users...
- John Stone (Tue Mar 27 2001 - 01:01:37 CST)
NVIDIA Quadro - CrystalEyes - Linux
- John Stone (Tue Sep 30 2003 - 11:03:20 CDT)
- EPF (Esben Peter Friis) (Tue Sep 30 2003 - 08:45:41 CDT)
- Jérôme Hénin (Tue Sep 30 2003 - 09:39:35 CDT)
- EPF (Esben Peter Friis) (Tue Sep 30 2003 - 09:27:56 CDT)
- Jérôme Hénin (Tue Sep 30 2003 - 09:13:20 CDT)
- Jérôme Hénin (Tue Sep 30 2003 - 08:20:52 CDT)
NVIDIA Quadro - CrystalEyes - Windows]
- John Stone (Mon Oct 06 2003 - 17:39:34 CDT)
Nvidia quadro Fx1300 problem
- Federico Filomia (Mon Aug 01 2011 - 02:25:42 CDT)
- Axel Kohlmeyer (Fri Jul 29 2011 - 10:39:19 CDT)
- John Stone (Fri Jul 29 2011 - 09:57:18 CDT)
- Federico Filomia (Fri Jul 29 2011 - 03:55:25 CDT)
nVidia Quadro FX1400 Stereo Clone Mode
- John Stone (Wed Mar 08 2006 - 13:35:48 CST)
- Paul Van Allsburg (Wed Mar 08 2006 - 13:01:31 CST)
nvidia quadro, linux_x86, and performance difference w/nvidia drivers 1.0.5336 vs anything newer or older on VMD 1.8.2
- John Stone (Tue Jan 04 2005 - 18:22:52 CST)
- Sabuj Pattanayek (Tue Jan 04 2005 - 18:17:30 CST)
- John Stone (Tue Jan 04 2005 - 17:45:07 CST)
- Sabuj Pattanayek (Tue Jan 04 2005 - 17:28:46 CST)
- John Stone (Tue Jan 04 2005 - 16:26:29 CST)
- Sabuj Pattanayek (Tue Jan 04 2005 - 16:06:39 CST)
Nvidia update 1.0-7664 success for VMD-1.8.3
- Dow Hurst DPHURST (Tue Jun 21 2005 - 16:49:37 CDT)
nvidia woes.
- John Stone (Tue Sep 12 2000 - 11:04:08 CDT)
- Kim Branson (Mon Sep 11 2000 - 21:10:28 CDT)
NVIDIA, SGI and VA Linux To Bring Graphics Standard To Desktop Linux Market
- Eugene Leitl (Wed Jan 19 2000 - 19:21:19 CST)
obj export
- John Stone (Wed Mar 11 2009 - 11:15:23 CDT)
- Raluca Mihaela ANDREI (Wed Mar 11 2009 - 10:55:03 CDT)
- Raluca Mihaela ANDREI (Wed Mar 11 2009 - 10:04:07 CDT)
- John Stone (Wed Mar 11 2009 - 10:15:18 CDT)
- John Stone (Tue Mar 10 2009 - 21:56:21 CDT)
- John Stone (Tue Mar 10 2009 - 12:01:10 CDT)
- Axel Kohlmeyer (Tue Mar 10 2009 - 10:25:07 CDT)
- Raluca Mihaela ANDREI (Tue Mar 10 2009 - 10:02:01 CDT)
- Axel Kohlmeyer (Tue Mar 10 2009 - 09:24:01 CDT)
- Raluca Mihaela ANDREI (Tue Mar 10 2009 - 03:27:40 CDT)
obscurity in sbcg tutorial description
- Francesco Pietra (Sat Jan 09 2010 - 03:37:49 CST)
obtaining lists of bond, angle, and dihedral interactions
- John Stone (Mon Nov 22 2004 - 21:11:43 CST)
- Philip Blood (Fri Nov 19 2004 - 17:21:44 CST)
odd render problems with Vista
- Eric H. Lee (Sun Jan 11 2009 - 20:53:13 CST)
- Irene Newhouse (Sun Jan 11 2009 - 19:49:29 CST)
- Irene Newhouse (Sun Jan 11 2009 - 18:20:08 CST)
- Peter Freddolino (Sun Jan 11 2009 - 18:50:51 CST)
- Irene Newhouse (Sun Jan 11 2009 - 18:25:25 CST)
- Irene Newhouse (Sun Jan 11 2009 - 18:21:59 CST)
- Peter Freddolino (Sun Jan 11 2009 - 14:49:47 CST)
- Axel Kohlmeyer (Sun Jan 11 2009 - 14:37:10 CST)
- Benjamin Bouvier (Sun Jan 11 2009 - 14:20:04 CST)
- Axel Kohlmeyer (Sun Jan 11 2009 - 14:27:58 CST)
- Peter Freddolino (Sun Jan 11 2009 - 14:05:18 CST)
- Irene Newhouse (Sun Jan 11 2009 - 13:26:57 CST)
of diet pills, like a racing heart or queasy stomach
- ltrabuco_at_ks.uiuc.edu (Tue Jul 21 2009 - 09:47:48 CDT)
OFF drawing method
- Leandro Martínez (Tue May 02 2006 - 10:10:45 CDT)
- John Stone (Tue May 02 2006 - 10:07:49 CDT)
- Leandro Martínez (Tue May 02 2006 - 09:53:19 CDT)
Off Topic: Small Molecule Modeling
- Paul Daniel Jones (Wed Apr 20 2005 - 11:00:21 CDT)
Offset for frame ids in dcd trajectory
- John Stone (Tue May 26 2009 - 15:32:40 CDT)
- DimitryASuplatov (Sat May 23 2009 - 11:11:09 CDT)
OmpF biological unit
- John Stone (Mon Mar 19 2007 - 11:29:09 CDT)
- Adrian Kaats (Thu Mar 15 2007 - 18:58:17 CDT)
On Cremer-Pople ring puckering
- Mr Bernard Ramos (Wed Jul 06 2011 - 14:13:05 CDT)
On solvate plugin
- S.K. Ghosh (Mon Jun 23 2008 - 07:22:06 CDT)
- Bhargava (Mon Jun 23 2008 - 09:14:05 CDT)
- S.K. Ghosh (Mon Jun 23 2008 - 07:23:00 CDT)
One more psfgen question
- Marc Charendoff (Thu Feb 10 2011 - 15:40:14 CST)
One of a kind replicas
- Richard Stone (Thu May 01 2008 - 11:18:31 CDT)
- Erin Ziegler (Wed Apr 23 2008 - 21:53:24 CDT)
- Jane Mayberry (Mon Apr 21 2008 - 07:16:11 CDT)
one residue rmsd
- John Stone (Tue May 02 2006 - 11:00:59 CDT)
- snoze pa (Mon May 01 2006 - 17:49:02 CDT)
One Year written repl1ca w4tches warranty
- Kari Maher (Tue Apr 24 2007 - 15:10:17 CDT)
only one model is displayed
- John Stone (Fri Feb 11 2011 - 12:49:23 CST)
- Joyce Tan (Fri Feb 11 2011 - 10:50:31 CST)
- Joyce Tan (Fri Feb 11 2011 - 09:56:39 CST)
only show some HBonds
- Sanjeev B.S. (Sat Oct 02 2004 - 00:20:11 CDT)
- ioana_at_pegasus.arc.nasa.gov (Fri Oct 01 2004 - 20:59:35 CDT)
only vmd console
- Axel Kohlmeyer (Wed Apr 13 2005 - 04:43:07 CDT)
- Huaer XC (Tue Apr 12 2005 - 21:37:29 CDT)
- John Stone (Mon Apr 11 2005 - 13:35:17 CDT)
- Huaer XC (Mon Apr 11 2005 - 13:32:49 CDT)
- John Stone (Mon Apr 11 2005 - 00:29:17 CDT)
- John Stone (Mon Apr 11 2005 - 00:30:13 CDT)
- Huaer XC (Sun Apr 10 2005 - 16:40:31 CDT)
- matteo.pennestri_at_virgilio.it (Sun Apr 10 2005 - 08:43:26 CDT)
opdating the selection during trajectory
- Justin Gullingsrud (Mon Oct 06 2003 - 09:24:48 CDT)
- Vlad Cojocaru (Mon Oct 06 2003 - 07:20:38 CDT)
Open diff pdbs with diff # of atoms?
- Axel Kohlmeyer (Sat May 14 2005 - 02:04:23 CDT)
- Prasad S Garimella (Fri May 13 2005 - 17:02:51 CDT)
opendx and vmd
- John Stone (Mon Jan 30 2006 - 14:43:39 CST)
- Guanglei Cui (Sat Jan 28 2006 - 21:30:52 CST)
OpenGL cards for workstations
- Justin Gullingsrud (Fri Jan 04 2002 - 17:05:36 CST)
OpenGL Display
- John Stone (Tue Nov 11 2008 - 08:05:17 CST)
- max_at_liaad.up.pt (Tue Nov 11 2008 - 04:03:12 CST)
- Axel Kohlmeyer (Wed Nov 14 2007 - 23:53:07 CST)
- Christopher Stiles (Wed Nov 14 2007 - 07:14:17 CST)
- Axel Kohlmeyer (Wed Nov 14 2007 - 04:09:40 CST)
- Christopher Stiles (Tue Nov 13 2007 - 23:33:32 CST)
OpenGL Display slow/freeze
- Emily Chen (Tue Jun 22 2010 - 13:51:37 CDT)
- Emily Chen (Tue Jun 22 2010 - 13:53:30 CDT)
- Axel Kohlmeyer (Tue Jun 22 2010 - 08:45:15 CDT)
- John Stone (Tue Jun 22 2010 - 08:54:46 CDT)
- John Stone (Tue Jun 22 2010 - 09:00:38 CDT)
- Yangyang Shen (Tue Jun 22 2010 - 08:34:40 CDT)
- Yangyang Shen (Tue Jun 22 2010 - 08:09:59 CDT)
- John Stone (Mon Jun 21 2010 - 22:43:38 CDT)
- Axel Kohlmeyer (Mon Jun 21 2010 - 22:52:13 CDT)
- Yangyang Shen (Mon Jun 21 2010 - 22:08:11 CDT)
openGL error
- John Stone (Fri Feb 04 2005 - 14:32:28 CST)
- John Stone (Fri Feb 04 2005 - 11:09:01 CST)
- Florian Haberl (Fri Feb 04 2005 - 10:15:08 CST)
- John Stone (Fri Feb 04 2005 - 09:55:38 CST)
- vijay_at_mbu.iisc.ernet.in (Fri Feb 04 2005 - 00:46:00 CST)
opengl libraries
- B. Bennion (Tue Nov 27 2001 - 15:18:45 CST)
- John Stone (Tue Nov 27 2001 - 15:04:55 CST)
- John Stone (Mon Nov 26 2001 - 12:32:53 CST)
- B. Bennion (Mon Nov 26 2001 - 12:23:49 CST)
openGL library
- Goutham (Tue Mar 31 2009 - 13:34:38 CDT)
- Goutham (Tue Mar 31 2009 - 12:15:57 CDT)
- John Stone (Tue Mar 31 2009 - 12:21:00 CDT)
- John Stone (Tue Mar 31 2009 - 11:38:28 CDT)
- John Stone (Fri Mar 27 2009 - 07:53:34 CDT)
- Goutham (Fri Mar 27 2009 - 01:34:00 CDT)
- Goutham (Fri Mar 27 2009 - 00:32:34 CDT)
- John Stone (Thu Mar 26 2009 - 21:38:22 CDT)
- Axel Kohlmeyer (Thu Mar 26 2009 - 20:20:31 CDT)
- Goutham (Thu Mar 26 2009 - 19:48:52 CDT)
OpenGL library loading
- John Stone (Tue Jan 27 2004 - 16:31:56 CST)
- Steven F. Killen (Tue Jan 27 2004 - 16:23:35 CST)
- John Stone (Tue Jan 27 2004 - 15:20:56 CST)
- John Stone (Tue Jan 27 2004 - 13:04:08 CST)
- Steven F. Killen (Tue Jan 27 2004 - 11:26:51 CST)
- John Stone (Thu Jan 22 2004 - 16:13:37 CST)
- Steven F. Killen (Thu Jan 22 2004 - 13:34:26 CST)
opengl not found
- John Stone (Tue Jan 17 2006 - 10:49:40 CST)
- Gavin Seddon (Mon Jan 16 2006 - 10:00:14 CST)
OpenGL problem
- John Stone (Tue Mar 06 2007 - 16:17:15 CST)
- Rene Salmon (Tue Mar 06 2007 - 16:03:19 CST)
OpenGL Programmable Shading not available.
- John Stone (Fri Apr 28 2006 - 10:11:21 CDT)
- Vlad Cojocaru (Fri Apr 28 2006 - 08:52:49 CDT)
OpenGL Shading Program is not available
- John Stone (Wed Feb 08 2006 - 18:04:21 CST)
- griadi_at_utalca.cl (Fri Feb 03 2006 - 20:39:37 CST)
OpenGL Window
- Axel Kohlmeyer (Wed Mar 04 2009 - 07:55:24 CST)
- Max (Wed Mar 04 2009 - 05:16:54 CST)
opengl window resize hangs on linux/nvidia
- John Stone (Tue Jun 17 2003 - 15:32:29 CDT)
- Mikko Huhtala (Tue Jun 17 2003 - 03:01:44 CDT)
openGL x,y position
- John Stone (Sun Apr 22 2012 - 22:56:02 CDT)
- Chris Harrison (Sun Apr 22 2012 - 23:00:26 CDT)
- Axel Kohlmeyer (Sun Apr 22 2012 - 22:12:58 CDT)
- Mayne, Christopher G (Sun Apr 22 2012 - 22:20:56 CDT)
- Mayne, Christopher G (Sun Apr 22 2012 - 22:08:59 CDT)
- Axel Kohlmeyer (Sun Apr 22 2012 - 21:46:14 CDT)
- Mayne, Christopher G (Sat Apr 21 2012 - 14:01:51 CDT)
OpenGL, rendering spheres
- Tim Freeman (Thu Jul 20 2000 - 07:40:33 CDT)
OpenGLExtensions.C compile problem
- John Stone (Sun Sep 14 2003 - 14:44:31 CDT)
- John Stone (Thu Sep 11 2003 - 10:12:19 CDT)
- Dave Humbird (Wed Sep 10 2003 - 18:52:59 CDT)
Opening amber files in VMD
- John Stone (Fri Apr 08 2005 - 13:57:01 CDT)
- Simon Whitehead (Fri Apr 08 2005 - 10:14:51 CDT)
Opening DCD file >2GB
- Peter Freddolino (Sun Sep 10 2006 - 15:23:31 CDT)
- Lechuga, Javier (Sun Sep 10 2006 - 13:35:52 CDT)
opening gromacs .gro file gives warning messsage and does not display the molecule
- Nicolas Sapay (Tue Jun 17 2008 - 13:51:36 CDT)
- Axel Kohlmeyer (Tue Jun 17 2008 - 09:11:03 CDT)
- jake wernik (Mon Jun 16 2008 - 20:19:52 CDT)
opening VMD on OSX
- tom keyes (Sat Jun 19 2004 - 16:30:47 CDT)
- John Stone (Fri Jun 18 2004 - 11:08:59 CDT)
- tom keyes (Thu Jun 17 2004 - 13:32:48 CDT)
OpenSuSE 10.3: ppmtompeg and MovieMaker plugin
- Dow Hurst DPHURST (Fri Dec 14 2007 - 12:14:46 CST)
Operations with MD frames - acquiring time infromation
- John Stone (Mon May 25 2009 - 23:44:49 CDT)
- Peter Freddolino (Sat May 23 2009 - 09:43:28 CDT)
- DimitryASuplatov (Sat May 23 2009 - 09:21:49 CDT)
- Peter Freddolino (Sat May 23 2009 - 09:09:49 CDT)
- DimitryASuplatov (Sat May 23 2009 - 08:16:37 CDT)
Oprah certified wieght loss solution Acai.Berri.
- petefred_at_ks.uiuc.edu (Mon Jun 29 2009 - 19:29:14 CDT)
order of atoms in an improper dihedral
- matziast_at_med.uth.gr (Thu Dec 02 2010 - 04:10:41 CST)
- matziast_at_med.uth.gr (Thu Dec 02 2010 - 03:31:35 CST)
order parameter from trajectory
- Roman Petrenko (Fri Jul 24 2009 - 17:08:50 CDT)
Order Parameter Script for changing bilayer normal
- Richard Swenson (Fri Jun 01 2007 - 09:21:07 CDT)
order parameters for long lipids
- Raul Araya (Tue Oct 27 2009 - 08:47:38 CDT)
Orientation an rotation of molecules in a movie
- John Stone (Tue Oct 12 2010 - 15:04:26 CDT)
- Daniel Hornburg (Sat Oct 09 2010 - 07:26:21 CDT)
orientation of hexahedrons parallelepipeds unit cells relative to x,y axes
- Axel Kohlmeyer (Sat Jul 28 2007 - 17:24:08 CDT)
- Èùìáò Åõáããåëéäçò (Sat Jul 28 2007 - 09:03:23 CDT)
orientation of protein molecule
- Axel Kohlmeyer (Wed Jan 05 2011 - 19:17:55 CST)
- Joshua Adelman (Wed Jan 05 2011 - 19:59:46 CST)
- prabhakar g (Wed Jan 05 2011 - 18:12:19 CST)
Orienting a Protein
- Kapil Amarnath (Sun Aug 14 2011 - 13:30:09 CDT)
- Balazs Jojart (Fri Aug 12 2011 - 18:57:22 CDT)
- Kapil Amarnath (Fri Aug 12 2011 - 11:19:31 CDT)
orthographic views and size
- John Stone (Wed Apr 03 2002 - 09:53:30 CST)
- Marc Baaden (Wed Apr 03 2002 - 03:43:28 CST)
OS X intel binary problem
- John Stone (Sun Apr 05 2009 - 09:48:59 CDT)
- Dan Lussier (Sun Apr 05 2009 - 09:40:26 CDT)
- Axel Kohlmeyer (Sun Apr 05 2009 - 09:48:37 CDT)
- Axel Kohlmeyer (Sun Apr 05 2009 - 09:05:07 CDT)
- Dan Lussier (Sun Apr 05 2009 - 03:02:20 CDT)
OSX 10.6 support?
- John Stone (Tue Aug 24 2010 - 10:45:39 CDT)
- Steve Smith (Tue Aug 24 2010 - 10:33:48 CDT)
- John Stone (Tue Aug 24 2010 - 10:02:20 CDT)
- Steve Smith (Tue Aug 24 2010 - 09:39:59 CDT)
- Joshua A. Anderson (Tue Aug 24 2010 - 07:00:36 CDT)
- Axel Kohlmeyer (Mon Aug 23 2010 - 17:28:21 CDT)
- Steve Smith (Mon Aug 23 2010 - 15:32:05 CDT)
osX anti aliasing and rendering speed / window size on linux
- John Stone (Mon Jun 16 2003 - 11:26:06 CDT)
- John Stone (Mon Jun 16 2003 - 10:11:33 CDT)
- Dr. Daniel James White PhD (Mon Jun 16 2003 - 04:45:54 CDT)
OSX quad buffered stereo possible on older G5 with GeForce FX5200!
- Dan White (Mon Mar 13 2006 - 08:17:46 CST)
osx startup script
- John Stone (Mon Sep 17 2007 - 15:34:55 CDT)
Other color scales than the predefined ones
- Berit Hinnemann (Wed Nov 26 2008 - 09:52:23 CST)
Other color scales than the predefined ones?
- John Stone (Thu Nov 27 2008 - 09:36:40 CST)
- Berit Hinnemann (Thu Nov 27 2008 - 03:38:46 CST)
- Axel Kohlmeyer (Wed Nov 26 2008 - 10:21:02 CST)
- Berit Hinnemann (Wed Nov 26 2008 - 07:00:17 CST)
Other glasses with CE emitters?
- cmorton_at_medstv.unimelb.edu.au (Thu Feb 24 2005 - 17:20:58 CST)
other-endian dcd problem also when trajectory obtained over network?
- root (Mon Dec 29 1997 - 09:19:31 CST)
Out of office until Nov. 16
- John Stone (Wed Nov 07 2007 - 11:57:55 CST)
Out of town until 3/28/2005...
- John Stone (Fri Mar 18 2005 - 10:54:25 CST)
Out of town until November 1
- John Stone (Thu Oct 16 2008 - 15:53:42 CDT)
out-of-core visualization of large trajectories
- John Stone (Tue Jan 17 2012 - 12:19:40 CST)
- Marc Baaden (Tue Jan 17 2012 - 12:08:31 CST)
out-of-order writegmx with topotools 1.2
- Axel Kohlmeyer (Mon Dec 05 2011 - 00:07:18 CST)
- Axel Kohlmeyer (Sat Dec 03 2011 - 18:18:38 CST)
Outline rendering style with Tachyon
- John Stone (Mon May 18 2009 - 14:47:33 CDT)
- Nicolas (Tue Mar 03 2009 - 16:04:17 CST)
- John Stone (Tue Mar 03 2009 - 14:48:32 CST)
- Heikki Kasnanen (Tue Mar 03 2009 - 02:20:08 CST)
output
- John Stone (Mon Nov 15 1999 - 10:40:20 CST)
- Deepak Singh (Sun Nov 14 1999 - 19:48:57 CST)
output file format
- Axel Kohlmeyer (Fri Sep 01 2006 - 15:01:50 CDT)
- alexandra.marques_at_fc.up.pt (Fri Sep 01 2006 - 14:20:35 CDT)
- Axel Kohlmeyer (Thu Aug 31 2006 - 10:52:13 CDT)
- alexandra.marques_at_fc.up.pt (Thu Aug 31 2006 - 10:20:14 CDT)
output of distances between atoms or coordinates
- Axel Kohlmeyer (Thu Sep 20 2007 - 10:20:08 CDT)
- INPE (Ingrid Viveka Pettersson) (Thu Sep 20 2007 - 08:27:39 CDT)
Output of forces
- Axel Kohlmeyer (Thu Dec 02 2010 - 04:29:05 CST)
- Pletezhov Alexandr (Thu Dec 02 2010 - 03:18:26 CST)
output of the ssrecalc command
- jrui_at_ci.uc.pt (Sat Feb 09 2008 - 08:53:39 CST)
- OZGE ENGIN (Sat Feb 09 2008 - 07:22:59 CST)
- jrui_at_ci.uc.pt (Sat Feb 09 2008 - 07:03:45 CST)
- OZGE ENGIN (Sat Feb 09 2008 - 06:39:27 CST)
- jrui_at_ci.uc.pt (Sat Feb 09 2008 - 04:50:46 CST)
- OZGE ENGIN (Fri Feb 08 2008 - 14:01:45 CST)
output secondary structure assignment into a file
- John Stone (Thu Aug 11 2005 - 14:33:06 CDT)
- Ting Wang (Tue Aug 09 2005 - 03:50:11 CDT)
output values in my script
- Axel Kohlmeyer (Thu Sep 08 2011 - 19:51:54 CDT)
- kirtana S (Thu Sep 08 2011 - 17:38:04 CDT)
Outputing Dihedral Indexes for key structures (backbone, alpha-helix, etc...)
- John Stone (Wed Feb 02 2005 - 10:08:07 CST)
- Paul R Brenner (Tue Feb 01 2005 - 21:47:38 CST)
- Paul R Brenner (Tue Feb 01 2005 - 13:59:55 CST)
- Jan Saam (Tue Feb 01 2005 - 00:01:29 CST)
- Paul R Brenner (Mon Jan 31 2005 - 22:11:28 CST)
outputing secondary structure from timeline
- Jocelyn Rodgers (Mon Jan 23 2006 - 10:29:30 CST)
outputing xyz coordinates of selection
- John Stone (Mon Oct 25 2004 - 13:25:50 CDT)
- Amarda Shehu (Sat Oct 23 2004 - 14:58:21 CDT)
overlapping two structures
- John Stone (Mon Oct 10 2005 - 10:52:00 CDT)
- Peter Freddolino (Fri Oct 07 2005 - 11:20:25 CDT)
- Peter Schellenberg (Thu Oct 06 2005 - 08:37:24 CDT)
overlay
- Marcos Sotomayor (Thu May 31 2007 - 01:29:50 CDT)
- Peter Freddolino (Tue May 29 2007 - 16:20:56 CDT)
- Alison Grinthal (Tue May 29 2007 - 15:58:18 CDT)
- Alison Grinthal (Mon May 28 2007 - 06:45:38 CDT)
Overlaying 2 structures
- John Stone (Fri Sep 25 2009 - 22:17:31 CDT)
- madura_at_duq.edu (Fri Sep 25 2009 - 15:55:05 CDT)
overlaying more than 2 molecules
- Blake Charlebois (Wed Aug 17 2005 - 12:57:30 CDT)
- Vlad Cojocaru (Wed Aug 17 2005 - 11:31:15 CDT)
package ::struct::set not available
- Axel Kohlmeyer (Thu Jan 26 2012 - 09:40:06 CST)
- Ana Celia Vila Verde (Thu Jan 26 2012 - 08:36:56 CST)
package MDEnergy
- Axel Kohlmeyer (Tue Dec 13 2011 - 13:44:01 CST)
- menica dibenedetto (Tue Dec 13 2011 - 12:13:02 CST)
package psfgen: Failed to set coordinates for C3
- Jérôme Hénin (Fri Feb 25 2011 - 08:55:47 CST)
- Sebastian Maximilian Wilhelm (Fri Feb 25 2011 - 05:30:45 CST)
package require help
- sajad falsafi (Fri Aug 12 2011 - 04:05:33 CDT)
- Axel Kohlmeyer (Fri Aug 12 2011 - 03:51:27 CDT)
- hamze rahimi (Fri Aug 12 2011 - 01:31:22 CDT)
package require Tcl 8.5 => ::tcl::mathfunc::
- John Stone (Thu Aug 09 2007 - 11:04:00 CDT)
- John Stone (Thu Aug 09 2007 - 11:01:09 CDT)
- Philipp Schön (Thu Aug 09 2007 - 10:56:09 CDT)
Packed with Antioxidants . Acai Berry.
- petefred_at_ks.uiuc.edu (Mon Jun 29 2009 - 21:30:17 CDT)
Pair interaction calculation for large number different pairs
- John Stone (Thu Mar 03 2005 - 15:15:02 CST)
- Harindar Keer (Wed Mar 02 2005 - 18:43:45 CST)
pairInteraction and NAMDEnergy
- Goutham (Thu Apr 02 2009 - 11:21:27 CDT)
- Peter Freddolino (Wed Apr 01 2009 - 22:49:26 CDT)
- Goutham (Wed Apr 01 2009 - 22:43:23 CDT)
- Peter Freddolino (Wed Apr 01 2009 - 20:12:19 CDT)
- Goutham (Wed Apr 01 2009 - 17:05:52 CDT)
Pairwise RMSD
- Elijah Roberts (Tue Oct 07 2008 - 15:13:16 CDT)
- John Stone (Tue Oct 07 2008 - 13:20:12 CDT)
- Dong Xu (Fri Oct 03 2008 - 10:10:16 CDT)
pairwise rmsds in rmsdtt cvs1.9
- Luis Gracia (Wed Apr 06 2005 - 16:15:48 CDT)
panel missing!
- Axel Kohlmeyer (Thu May 17 2012 - 10:16:40 CDT)
- Reza Khalkhali (Thu May 17 2012 - 03:51:38 CDT)
- Axel Kohlmeyer (Wed May 16 2012 - 12:23:18 CDT)
- Reza Khalkhali (Wed May 16 2012 - 10:49:51 CDT)
parallel capabilities
- John Stone (Tue Jun 26 2007 - 18:06:07 CDT)
- Axel Kohlmeyer (Tue Jun 26 2007 - 16:24:22 CDT)
- Jana Black (Tue Jun 26 2007 - 14:27:38 CDT)
- Axel Kohlmeyer (Tue Jun 26 2007 - 14:14:27 CDT)
- L. Michel Espinoza-Fonseca (Tue Jun 26 2007 - 15:16:58 CDT)
- John Stone (Tue Jun 26 2007 - 14:56:29 CDT)
parallel rendering across clusters?
- John Stone (Fri Sep 15 2000 - 18:18:53 CDT)
- John Duff (Fri Sep 15 2000 - 16:16:16 CDT)
parallel VMD
- John Stone (Tue Sep 16 2008 - 13:35:03 CDT)
- Benjamin Stauch (Tue Sep 16 2008 - 07:47:16 CDT)
Parameter
- snoze pa (Fri Jul 20 2007 - 12:03:12 CDT)
parameter file for CHARMM
- matziast_at_med.uth.gr (Tue May 25 2010 - 16:03:33 CDT)
parameter file for DAD
- Yu Wang (Fri Apr 07 2006 - 09:18:55 CDT)
Parameter file for protein siloxane interactions
- Nilesh Ingle (Thu Oct 08 2009 - 21:47:14 CDT)
parameter files
- Peter Freddolino (Tue Mar 28 2006 - 14:31:59 CST)
- lily jin (Tue Mar 28 2006 - 14:13:39 CST)
parameter tool tutorial
- Jan Saam (Thu Dec 20 2007 - 17:50:00 CST)
- snoze pa (Thu Dec 20 2007 - 17:15:15 CST)
Parameter-Topology-Repository
- Jan Saam (Wed Nov 19 2003 - 11:56:41 CST)
Parameter/topology repository
- Mike McCallum (Fri Nov 07 2003 - 10:45:16 CST)
- Jan Saam (Fri Nov 07 2003 - 06:05:15 CST)
parameterization tool
- sajad falsafi (Thu Jun 09 2011 - 11:40:57 CDT)
- Bennion, Brian (Thu Jun 09 2011 - 11:52:29 CDT)
- Bennion, Brian (Wed Jun 08 2011 - 16:14:31 CDT)
parameters file of POPC
- Axel Kohlmeyer (Mon Jun 04 2007 - 09:17:02 CDT)
- SMAHANE CHALABI (Mon Jun 04 2007 - 09:22:30 CDT)
Parametrization of hydrogen sulfide
- Raul Araya (Fri Jul 18 2008 - 17:54:45 CDT)
ParaTool
- Axel Kohlmeyer (Sun Feb 20 2011 - 12:25:46 CST)
- alamng_at_uci.edu (Sat Feb 19 2011 - 15:43:36 CST)
- doan dung (Sun Aug 29 2010 - 10:04:29 CDT)
paratool - parameter generation from gaussian log files
- sarah k (Mon Dec 14 2009 - 23:37:02 CST)
- Yu Fang (Mon Dec 14 2009 - 17:41:06 CST)
- Yu Fang (Mon Dec 14 2009 - 05:40:47 CST)
- sarah k (Fri Dec 11 2009 - 01:32:10 CST)
- Yu Fang (Thu Dec 10 2009 - 05:08:03 CST)
- sarah k (Thu Dec 10 2009 - 00:07:06 CST)
- Yu Fang (Wed Dec 09 2009 - 22:17:57 CST)
paratool ?
- John Stone (Fri May 26 2006 - 21:16:21 CDT)
- Monique Laberge (Fri May 26 2006 - 19:19:35 CDT)
Paratool Add/Edit Internal Coordinates window
- Francesco Pietra (Tue Jun 12 2007 - 00:29:05 CDT)
paratool and fatal error
- sarah k (Tue Nov 10 2009 - 23:27:33 CST)
paratool CHARMM style charges
- Jeffrey Potoff (Tue Dec 27 2011 - 13:55:04 CST)
- Axel Kohlmeyer (Tue Dec 27 2011 - 09:46:32 CST)
- Adrian Jasiñski (Tue Dec 27 2011 - 08:24:49 CST)
paratool dont recognize gaussian output
- angel_at_cbuc.cl (Fri Dec 12 2008 - 10:10:13 CST)
paratool error
- Goutham (Tue Aug 31 2010 - 20:02:30 CDT)
Paratool in VMD
- Syed Tarique Moin (Tue Dec 04 2007 - 05:18:08 CST)
paratool problem
- sarah k (Wed Nov 18 2009 - 23:43:52 CST)
- daniel aguayo (Mon Nov 27 2006 - 21:44:22 CST)
- Jan Saam (Mon Nov 20 2006 - 19:31:45 CST)
- daniel aguayo (Mon Nov 20 2006 - 19:03:17 CST)
- John Stone (Mon Nov 20 2006 - 13:45:11 CST)
- John Stone (Wed Nov 15 2006 - 15:54:55 CST)
- daniel aguayo (Wed Nov 15 2006 - 13:29:58 CST)
- Jan Saam (Thu Sep 21 2006 - 17:21:29 CDT)
- Darrell Kuykendall (Thu Sep 21 2006 - 10:55:20 CDT)
- Axel Kohlmeyer (Thu Sep 21 2006 - 14:42:15 CDT)
- Jan Saam (Thu Sep 21 2006 - 14:24:58 CDT)
- Darrell Kuykendall (Thu Sep 21 2006 - 13:50:01 CDT)
- Jan Saam (Thu Aug 31 2006 - 04:02:13 CDT)
- daniel aguayo (Wed Aug 30 2006 - 18:35:36 CDT)
paratool questions
- Lisa Brown (Tue Mar 31 2009 - 15:25:00 CDT)
Paratool Tutorial
- Jacqueline Cawthray (Tue Dec 14 2010 - 14:01:59 CST)
paratool tutorial/ complete user guide
- Lisa Brown (Mon Mar 16 2009 - 14:43:49 CDT)
Paratool Window
- L. Michel Espinoza-Fonseca (Mon Jun 11 2007 - 14:52:14 CDT)
- Jan Saam (Mon Jun 11 2007 - 14:22:00 CDT)
- Vivek Sharma (Mon Jun 11 2007 - 08:48:07 CDT)
Paratool Window)
- Jan Saam (Mon Aug 27 2007 - 03:56:34 CDT)
- Francesco Pietra (Tue Aug 21 2007 - 10:29:41 CDT)
- Peter Freddolino (Tue Aug 21 2007 - 10:01:04 CDT)
- Jacob Poehlsgaard (Tue Aug 21 2007 - 06:18:40 CDT)
- Jan Saam (Fri Jun 15 2007 - 11:11:10 CDT)
paratool/gaff
- Jan Saam (Fri Jun 15 2007 - 10:04:37 CDT)
- Francesco Pietra (Thu Jun 14 2007 - 01:45:23 CDT)
- Jan Saam (Tue Jun 12 2007 - 11:35:09 CDT)
- Francesco Pietra (Wed Jun 06 2007 - 10:07:13 CDT)
- Francesco Pietra (Thu May 24 2007 - 02:48:06 CDT)
- Jan Saam (Thu May 24 2007 - 02:26:44 CDT)
- Francesco Pietra (Thu May 24 2007 - 01:14:37 CDT)
paratool/gaff -- Forgotten attachment
- Jan Saam (Tue Jun 12 2007 - 11:36:46 CDT)
paratool: gaussian output error
- Falgun Shah (Sat Feb 28 2009 - 17:15:25 CST)
Paratool: QMTool::bondlist error message
- Sebastian Stolzenberg (Fri Sep 25 2009 - 21:53:27 CDT)
- John Stone (Fri Sep 25 2009 - 22:09:51 CDT)
paratool: unable to load optimized geometry
- JC Gumbart (Mon Oct 19 2009 - 12:15:56 CDT)
- Axel Kohlmeyer (Mon Oct 19 2009 - 08:51:46 CDT)
- Stanislaw Bobritsky (Mon Oct 19 2009 - 03:21:33 CDT)
Paratool:Problems to load Hessian for charge distribution
- saam (Sat May 09 2009 - 08:06:00 CDT)
- Sabine Leroch (Fri May 08 2009 - 11:12:05 CDT)
Paratool`s error reading single point calculation.
- Ranyere Deyler (Fri Feb 25 2011 - 13:24:42 CST)
Paratools
- Syed Tarique Moin (Tue Nov 27 2007 - 03:06:27 CST)
paratools charmm partial charges
- Corey Fugate (Mon May 03 2010 - 13:42:02 CDT)
- Axel Kohlmeyer (Fri Apr 30 2010 - 08:38:27 CDT)
- Corey Fugate (Thu Apr 29 2010 - 23:30:19 CDT)
Paratools problem with Gaussian Output
- Jan Saam (Tue Mar 11 2008 - 05:40:06 CDT)
- Nicolas Floquet (Tue Mar 11 2008 - 02:39:05 CDT)
Paratools Question
- Corey Fugate (Thu Apr 29 2010 - 01:35:23 CDT)
- Axel Kohlmeyer (Wed Apr 28 2010 - 23:47:45 CDT)
- Corey Fugate (Wed Apr 28 2010 - 23:17:39 CDT)
parent molecule
- Joshua Adelman (Wed Nov 18 2009 - 11:43:00 CST)
- Joshua Adelman (Sun Nov 15 2009 - 07:06:58 CST)
- Joshua Adelman (Sat Nov 14 2009 - 07:47:23 CST)
- sarah k (Fri Nov 13 2009 - 23:59:28 CST)
parm7 plugin
- Guanglei Cui (Wed Jan 26 2005 - 11:06:21 CST)
- Florian Haberl (Wed Jan 26 2005 - 10:27:24 CST)
- John Stone (Wed Jan 26 2005 - 10:12:00 CST)
- Guanglei Cui (Wed Jan 26 2005 - 10:00:13 CST)
Parse Fep plugin error
- Joseph Antoine Garate (Fri Dec 23 2011 - 08:27:39 CST)
ParseFEP_domain error
- Ada Zhan (Tue Apr 26 2011 - 15:02:24 CDT)
- John Stone (Tue Apr 26 2011 - 10:50:18 CDT)
- Ada Zhan (Fri Apr 22 2011 - 14:50:57 CDT)
particular set of xyz coordinates in PDB causes seg fault
- Daniel Farrell (Tue Jun 15 2010 - 15:35:50 CDT)
- Axel Kohlmeyer (Tue Jun 15 2010 - 15:02:45 CDT)
- Daniel Farrell (Tue Jun 15 2010 - 13:59:50 CDT)
- Axel Kohlmeyer (Tue Jun 15 2010 - 12:56:50 CDT)
- Daniel Farrell (Tue Jun 15 2010 - 12:16:58 CDT)
pass variables from the shell to VMD
- dimka (Thu Sep 07 2006 - 12:09:32 CDT)
- Axel Kohlmeyer (Thu Sep 07 2006 - 11:51:01 CDT)
- Christian Fufezan (Thu Sep 07 2006 - 10:54:05 CDT)
passing arguments to a vmd script which is executed using play or source
- Axel Kohlmeyer (Mon Feb 23 2009 - 10:20:55 CST)
- Axel Kohlmeyer (Mon Feb 23 2009 - 09:15:44 CST)
- maria goranovic (Mon Feb 23 2009 - 09:19:24 CST)
- Axel Kohlmeyer (Mon Feb 23 2009 - 09:08:58 CST)
- mariagoranovic_at_gmail.com (Mon Feb 23 2009 - 04:24:14 CST)
passing parameters to a tcl script
- Justin Gullingsrud (Sat Oct 01 2005 - 15:26:00 CDT)
- Samuel Flores (Sat Oct 01 2005 - 11:42:51 CDT)
passive stereo projection using a Mac
- Jeff Hoch (Tue Sep 18 2007 - 12:18:15 CDT)
passive stereo setup on linux
- John Stone (Thu Mar 04 2004 - 13:11:00 CST)
- Joe Zhou (Thu Mar 04 2004 - 12:55:31 CST)
- John Stone (Wed Mar 03 2004 - 14:50:20 CST)
- Joe Zhou (Wed Mar 03 2004 - 14:47:53 CST)
- John Stone (Tue Mar 02 2004 - 12:48:17 CST)
- Joe Zhou (Tue Mar 02 2004 - 12:28:17 CST)
- John Stone (Mon Mar 01 2004 - 18:53:27 CST)
- John Stone (Mon Mar 01 2004 - 18:54:17 CST)
- Joe Zhou (Mon Mar 01 2004 - 16:18:06 CST)
patch CT3 and ACE problems in PSFGEN
- JC Gumbart (Fri Oct 08 2010 - 19:25:12 CDT)
- Markus K. Dahlgren (Fri Oct 08 2010 - 11:32:02 CDT)
- JC Gumbart (Thu Oct 07 2010 - 19:01:15 CDT)
- Markus K. Dahlgren (Thu Oct 07 2010 - 15:11:52 CDT)
Patch for deoxy and dideoxy nucleotides
- Stefan Franzen (Mon Feb 13 2012 - 09:31:12 CST)
Patch for Three or More monomers
- Axel Kohlmeyer (Fri Mar 12 2010 - 11:32:10 CST)
- muniyamuthu.raviprasad_at_ndsu.edu (Fri Mar 12 2010 - 10:41:03 CST)
patch in psfgen - ionic interaction and hydrogen bond
- Jim Phillips (Mon Jan 26 2004 - 17:41:55 CST)
- Han Choe (Sun Jan 25 2004 - 20:42:50 CST)
Patching Glu/N-terminus peptide bond type bond
- Tristan Croll (Thu Nov 17 2011 - 01:02:52 CST)
- Joaim Swedberg (Wed Nov 16 2011 - 17:41:38 CST)
Patchlet for MacOS 32/64-bit compilation
- FX (Sat Jul 02 2011 - 05:13:21 CDT)
PBC
- Olaf Lenz (Mon Jan 14 2008 - 03:51:10 CST)
- Nazanin Samadi (Thu Jan 10 2008 - 07:19:20 CST)
- John Stone (Tue Jan 06 2004 - 18:27:10 CST)
- John Stone (Tue Jan 06 2004 - 18:25:44 CST)
- Axel Kohlmeyer (Tue Jan 06 2004 - 16:49:44 CST)
- Mauricio C. Tripp (Tue Jan 06 2004 - 13:32:31 CST)
- Axel Kohlmeyer (Tue Jan 06 2004 - 12:19:50 CST)
- Mauricio C. Tripp (Tue Jan 06 2004 - 10:25:51 CST)
PBC & Solvate Tool in VMD
- Sharlene Denos (Wed Feb 16 2011 - 08:37:30 CST)
- JC Gumbart (Wed Feb 16 2011 - 07:49:41 CST)
- Ajasja LjubetiÄ (Wed Feb 16 2011 - 03:20:25 CST)
- Sharlene Denos (Wed Feb 16 2011 - 00:03:36 CST)
PBC + DCD wrap/unwrap
- Olaf Lenz (Tue Dec 15 2009 - 03:38:55 CST)
- Goutham (Mon Dec 14 2009 - 13:37:36 CST)
PBC - setting box size
- John Stone (Thu Mar 20 2003 - 21:58:52 CST)
- Dallas Warren (Thu Mar 20 2003 - 20:43:35 CST)
PBC and H-bond detection
- Eduard Schreiner (Fri Dec 09 2005 - 04:41:10 CST)
- Jérôme Hénin (Fri Dec 09 2005 - 02:23:36 CST)
- Mgr. Lubos Vrbka (Fri Dec 09 2005 - 01:51:37 CST)
- Mgr. Lubos Vrbka (Fri Dec 09 2005 - 01:32:31 CST)
- Marc Q. Ma (Thu Dec 08 2005 - 15:43:28 CST)
- Jérôme Hénin (Thu Dec 08 2005 - 14:21:17 CST)
- John Stone (Thu Dec 08 2005 - 13:40:13 CST)
- Jérôme Hénin (Thu Dec 08 2005 - 09:03:57 CST)
pbc and measure hbond
- John Stone (Thu Apr 22 2010 - 10:30:17 CDT)
- Dong Luo (Wed Apr 21 2010 - 10:38:30 CDT)
- yongpingzeng (Wed Apr 21 2010 - 08:33:43 CDT)
- yongpingzeng (Tue Apr 20 2010 - 23:16:04 CDT)
- Nicholas Musolino (Tue Apr 20 2010 - 11:27:39 CDT)
- yongpingzeng (Tue Apr 20 2010 - 10:07:29 CDT)
- yongpingzeng (Tue Apr 20 2010 - 10:11:38 CDT)
pbc and vmd
- L. Michel Espinoza-Fonseca (Tue Mar 07 2006 - 10:28:34 CST)
- John Stone (Tue Mar 07 2006 - 10:05:19 CST)
- Axel Kohlmeyer (Tue Mar 07 2006 - 09:55:27 CST)
- L. Michel Espinoza-Fonseca (Tue Mar 07 2006 - 10:01:14 CST)
- L. Michel Espinoza-Fonseca (Tue Mar 07 2006 - 07:11:21 CST)
- John Stone (Mon Mar 06 2006 - 19:20:18 CST)
- Nicolas Sapay (Mon Mar 06 2006 - 10:52:23 CST)
- Axel Kohlmeyer (Mon Mar 06 2006 - 01:01:20 CST)
- griadi_at_utalca.cl (Mon Mar 06 2006 - 09:23:09 CST)
- L. Michel Espinoza-Fonseca (Sun Mar 05 2006 - 18:06:50 CST)
PBC atom selection and contacts
- John Stone (Thu Feb 17 2005 - 14:29:25 CST)
- Mgr. Lubos Vrbka (Wed Feb 16 2005 - 09:32:53 CST)
- John Stone (Mon Feb 14 2005 - 11:29:42 CST)
- Mgr. Lubos Vrbka (Mon Feb 14 2005 - 10:29:45 CST)
- Lubos Vrbka (Thu Feb 10 2005 - 03:13:44 CST)
pbc in water count
- Agarwal, Silvi (Sat Mar 06 2010 - 11:52:55 CST)
- Olaf Lenz (Fri Mar 05 2010 - 01:06:46 CST)
- Agarwal, Silvi (Thu Mar 04 2010 - 12:07:37 CST)
pbc join
- Olaf Lenz (Tue Sep 02 2008 - 14:14:17 CDT)
- Edward Lyman (Tue Sep 02 2008 - 13:34:46 CDT)
- Olaf Lenz (Mon Mar 10 2008 - 01:49:46 CDT)
- Axel Kohlmeyer (Sun Mar 09 2008 - 23:57:35 CDT)
- Dongsheng Zhang (Sun Mar 09 2008 - 22:44:32 CDT)
PBC missed in Amber MD
- Axel Kohlmeyer (Thu May 10 2012 - 13:43:31 CDT)
- Axel Kohlmeyer (Thu May 10 2012 - 09:05:04 CDT)
- Albert (Thu May 10 2012 - 02:53:00 CDT)
PBC Option With Solvate Tool
- Sharlene Denos (Tue Feb 15 2011 - 23:31:00 CST)
PBC problem in gofr
- Axel Kohlmeyer (Mon Jul 30 2007 - 08:57:10 CDT)
- sfrickenhaus (Mon Jul 30 2007 - 04:53:40 CDT)
pbc unwrap not complete
- Nicola Giacche' (Tue May 24 2011 - 09:42:19 CDT)
- Olaf Lenz (Mon May 23 2011 - 04:57:38 CDT)
- Nicola Giacche' (Fri May 20 2011 - 08:05:40 CDT)
pbc wrap
- Hitesh Patel (Mon Nov 14 2011 - 11:09:41 CST)
- Hitesh Patel (Mon Nov 14 2011 - 10:17:12 CST)
- Olaf Lenz (Mon Nov 14 2011 - 09:57:04 CST)
- Axel Kohlmeyer (Mon Nov 14 2011 - 09:57:06 CST)
- Hitesh Patel (Mon Nov 14 2011 - 08:48:42 CST)
- Olaf Lenz (Mon May 16 2011 - 03:14:25 CDT)
- cnu gromacs (Fri May 13 2011 - 13:50:30 CDT)
- Olaf Lenz (Tue Jun 01 2010 - 05:23:05 CDT)
- Salvador H-V (Thu May 27 2010 - 17:35:54 CDT)
pbc wrap center on protein
- Luca Bellucci (Sat Dec 19 2009 - 16:06:12 CST)
- Balazs Jojart (Sat Dec 19 2009 - 14:56:22 CST)
- Axel Kohlmeyer (Sat Dec 19 2009 - 14:45:59 CST)
- Balazs Jojart (Sat Dec 19 2009 - 12:16:22 CST)
PBC wrap on hexagonal periodic cells
- OPC3_at_pitt.edu (Thu Oct 28 2010 - 12:12:51 CDT)
pbc-box
- mohammad agha (Wed May 23 2012 - 10:31:08 CDT)
- Olaf Lenz (Wed May 23 2012 - 01:31:41 CDT)
- mohammad agha (Tue May 22 2012 - 08:10:30 CDT)
- Olaf Lenz (Tue May 22 2012 - 02:42:45 CDT)
- mohammad agha (Mon May 21 2012 - 23:30:38 CDT)
- mohammad agha (Sat May 19 2012 - 08:02:59 CDT)
pbc: relation of orthonormalizing; cart. coords; rotation matrices.
- Olaf Lenz (Mon Oct 09 2006 - 09:58:55 CDT)
- Neelanjana Sengupta (Mon Oct 09 2006 - 09:48:49 CDT)
- Neelanjana Sengupta (Thu Oct 05 2006 - 12:17:57 CDT)
- Neelanjana Sengupta (Thu Oct 05 2006 - 11:55:17 CDT)
pbctools & Desmond trajectory with protein units 'jumping' into other cells
- Irene Newhouse (Mon Jan 10 2011 - 13:22:26 CST)
pbctools on alpha version
- Olaf Lenz (Wed Apr 22 2009 - 06:14:42 CDT)
- Dan Lussier (Wed Apr 22 2009 - 03:46:23 CDT)
- Axel Kohlmeyer (Sat Apr 18 2009 - 10:11:47 CDT)
- Olaf Lenz (Sat Apr 18 2009 - 04:18:50 CDT)
- Dan Lussier (Fri Apr 17 2009 - 09:05:06 CDT)
PBCTools Plugin
- John Stone (Mon Mar 26 2007 - 15:56:23 CDT)
- Zheng Hu (Mon Mar 26 2007 - 15:14:50 CDT)
pbctools plugin & protein-bound ligand
- Irene Newhouse (Wed May 25 2011 - 14:59:59 CDT)
- Olaf Lenz (Wed May 25 2011 - 02:01:11 CDT)
- Irene Newhouse (Tue May 24 2011 - 14:36:12 CDT)
pbctools usage
- Axel Kohlmeyer (Wed Oct 08 2008 - 10:23:44 CDT)
- Subramanian Vaitheeswaran (Wed Oct 08 2008 - 08:21:10 CDT)
PBCtools verison 2.3: how to obtain it?
- Olaf Lenz (Sun Oct 26 2008 - 02:57:17 CDT)
- Axel Kohlmeyer (Fri Oct 24 2008 - 10:32:16 CDT)
- mon_sharma_at_research.iiit.ac.in (Fri Oct 24 2008 - 09:19:37 CDT)
PBCTools-problem getting unitcell parameters
- Axel Kohlmeyer (Thu Nov 12 2009 - 20:25:30 CST)
- A D (Thu Nov 12 2009 - 19:40:31 CST)
pbcunwrap, DL_POLY v 3
- Olaf Lenz (Wed May 09 2007 - 23:50:34 CDT)
- Joshua D. Moore (Wed May 09 2007 - 11:27:29 CDT)
- Olaf Lenz (Wed May 09 2007 - 08:52:55 CDT)
- Axel Kohlmeyer (Wed May 09 2007 - 07:42:23 CDT)
- Joshua D. Moore (Wed May 09 2007 - 01:37:14 CDT)
PBCWrap for Gromacs?
- John Stone (Tue Jun 29 2004 - 13:52:45 CDT)
- Xu Zhiping (Tue Jun 29 2004 - 07:19:33 CDT)
PBCwrap tools
- Molybdos Kirkimpolakis (Sun Jul 10 2011 - 16:08:47 CDT)
- Axel Kohlmeyer (Sun Jul 10 2011 - 11:38:26 CDT)
- Molybdos Kirkimpolakis (Sun Jul 10 2011 - 09:20:00 CDT)
- Axel Kohlmeyer (Sun Jul 10 2011 - 05:34:09 CDT)
- Molybdos Kirkimpolakis (Sun Jul 10 2011 - 00:17:29 CDT)
- Axel Kohlmeyer (Sat Jul 09 2011 - 18:33:24 CDT)
- Simulation Biology (Sat Jul 09 2011 - 17:48:29 CDT)
PBCwrap: wrapping DCD files
- John Stone (Tue Jun 29 2004 - 13:20:48 CDT)
- Vani Krishna (Mon Jun 28 2004 - 22:03:45 CDT)
PBS script for LINUX cluster
- Florian Haberl (Wed Jan 19 2005 - 02:56:39 CST)
- Brian Bennion (Tue Jan 18 2005 - 10:25:05 CST)
- Swarna Patra (Sun Jan 16 2005 - 20:03:04 CST)
pbwithin and within differences
- Roman Petrenko (Tue Oct 27 2009 - 09:09:36 CDT)
- Olaf Lenz (Tue Oct 27 2009 - 08:26:08 CDT)
- Gustavo Gust (Tue Oct 27 2009 - 06:48:51 CDT)
pbwithin selection
- Axel Kohlmeyer (Thu Nov 10 2011 - 09:27:47 CST)
- arash azari (Thu Nov 10 2011 - 07:58:28 CST)
PC suitable for visualisation of large systems, maximum namuber of atoms in a .pdb file
- Ian Stokes-Rees (Wed Jul 21 2010 - 12:20:56 CDT)
- Prskalo, Alen-Pilip (Wed Jul 21 2010 - 08:42:42 CDT)
- Axel Kohlmeyer (Wed Jul 21 2010 - 09:09:19 CDT)
- Axel Kohlmeyer (Wed Jul 21 2010 - 08:11:34 CDT)
- Ian Stokes-Rees (Wed Jul 21 2010 - 07:07:51 CDT)
- Prskalo, Alen-Pilip (Wed Jul 21 2010 - 02:40:27 CDT)
PC-gamess
- Ran Friedman (Tue Feb 20 2007 - 11:24:32 CST)
- John Stone (Tue Feb 20 2007 - 10:55:57 CST)
- Ran Friedman (Tue Feb 20 2007 - 08:33:27 CST)
- Per Jr. Greisen (Tue Feb 20 2007 - 05:02:45 CST)
PCA analysis of NAMD dcd files
- Joshua Adelman (Tue Oct 19 2010 - 07:30:16 CDT)
- surendra jain (Tue Oct 19 2010 - 04:58:47 CDT)
PCA of desmond trajectories
- Hitesh Patel (Wed Feb 01 2012 - 09:29:15 CST)
pdb - generation
- John Stone (Tue Mar 21 2006 - 10:16:00 CST)
- Florian Haberl (Tue Mar 21 2006 - 09:06:57 CST)
- Osmany guirola Cruz (Tue Mar 21 2006 - 06:39:31 CST)
PDB CONECT
- John Stone (Tue May 30 2006 - 15:37:41 CDT)
- Mihaly Mezei (Tue May 30 2006 - 15:26:36 CDT)
PDB COORDINATES
- Axel Kohlmeyer (Sun Jul 26 2009 - 19:59:55 CDT)
- Edward P. Manning (Sun Jul 26 2009 - 19:08:28 CDT)
PDB file
- John Stone (Sun Jan 03 2010 - 02:23:41 CST)
- Burak Cankurtaran (Tue Dec 29 2009 - 05:41:23 CST)
- nunolf_at_ci.uc.pt (Thu Dec 21 2006 - 14:22:10 CST)
- nunolf_at_ci.uc.pt (Thu Dec 21 2006 - 08:49:55 CST)
- Rita Cassia (Thu Dec 21 2006 - 05:53:15 CST)
pdb file generated not readable by tleap
- Axel Kohlmeyer (Fri May 22 2009 - 10:08:06 CDT)
- Myunggi Yi (Fri May 22 2009 - 09:19:36 CDT)
- Axel Kohlmeyer (Wed May 20 2009 - 16:28:54 CDT)
- Yi Shang (Wed May 20 2009 - 14:49:26 CDT)
PDB file output
- Justin Gullingsrud (Tue Jul 25 2000 - 12:22:38 CDT)
- Sergei Izrailev (Tue Jul 25 2000 - 12:26:18 CDT)
- B. Bennion (Tue Jul 25 2000 - 11:59:40 CDT)
pdb file reading error
- Rima Chaudhuri (Wed Jul 05 2006 - 12:16:59 CDT)
pdb file with different number of molecules
- Axel Kohlmeyer (Wed Mar 16 2011 - 13:20:42 CDT)
- Peyman Z.Moghadam (Wed Mar 16 2011 - 12:30:53 CDT)
pdb files
- VISWANADHA SRIDHARA (Wed Jan 05 2005 - 16:08:28 CST)
- Axel Kohlmeyer (Wed Jan 05 2005 - 02:39:13 CST)
- nordgren_at_sas.upenn.edu (Tue Jan 04 2005 - 23:02:30 CST)
- Axel Kohlmeyer (Tue Jan 04 2005 - 14:02:50 CST)
- VISWANADHA SRIDHARA (Tue Jan 04 2005 - 12:48:14 CST)
- John Stone (Tue Jan 04 2005 - 10:26:53 CST)
- John Stone (Tue Jan 04 2005 - 10:23:26 CST)
- Axel Kohlmeyer (Tue Jan 04 2005 - 01:33:53 CST)
- VISWANADHA SRIDHARA (Mon Jan 03 2005 - 18:19:04 CST)
PDB Files for Carbon Nanotubes
- Gaurav Sharma (Sun Jul 17 2005 - 17:22:55 CDT)
pdb files in VMD/NAMD TUTORIAL
- John Stone (Thu Jan 16 2003 - 15:11:53 CST)
- Ioana Cozmuta (Wed Jan 15 2003 - 21:52:27 CST)
pdb format
- Justin Gullingsrud (Sun Dec 15 2002 - 23:07:05 CST)
- Ioana Cozmuta (Fri Dec 13 2002 - 20:23:17 CST)
pdb from trajectory
- _at_huji.ac.il (Tue Jan 23 2007 - 09:16:29 CST)
PDB manipulation
- nahren manuel (Wed Aug 31 2011 - 05:07:03 CDT)
- John Stone (Fri Aug 05 2011 - 16:35:52 CDT)
- nahren manuel (Fri Jul 29 2011 - 09:44:38 CDT)
pdb naming convention
- Justin Gullingsrud (Wed Apr 17 2002 - 10:26:39 CDT)
- Adrian E. Roitberg (Wed Apr 17 2002 - 07:59:32 CDT)
pdb naming convention to get ribbon representation
- John Stone (Thu Sep 01 2011 - 07:59:26 CDT)
- Casey Johnson (Wed Aug 31 2011 - 09:08:11 CDT)
PDB Parser cannot interpret ^M ?
- John Stone (Wed Feb 15 2006 - 11:29:03 CST)
- Francis Reyes (Tue Feb 14 2006 - 22:53:06 CST)
pdb reader/writer appears to corrupt pdb output
- Bennion, Brian (Thu Feb 16 2012 - 16:04:27 CST)
- John Stone (Thu Feb 16 2012 - 16:21:53 CST)
- John Stone (Thu Feb 16 2012 - 15:51:08 CST)
- Bennion, Brian (Thu Feb 16 2012 - 14:49:06 CST)
pdb structure off the web
- John Stone (Tue Jan 03 2006 - 10:06:25 CST)
- sheldonp_at_sas.upenn.edu (Mon Jan 02 2006 - 10:00:06 CST)
PDB to STL help needed
- John Stone (Tue Sep 06 2005 - 11:15:01 CDT)
- John Stone (Wed Aug 03 2005 - 12:59:09 CDT)
- Kevin Smith (Wed Aug 03 2005 - 09:23:02 CDT)
pdbalias not working
- Samuel C Flores (Wed Jun 21 2006 - 14:12:41 CDT)
- John Stone (Wed Jun 21 2006 - 13:55:41 CDT)
- Samuel C Flores (Thu Jun 15 2006 - 21:42:06 CDT)
Pegasus Technologies FreeD drivers?
- Eugene Leitl (Wed Dec 08 1999 - 15:05:42 CST)
- John Stone (Wed Dec 08 1999 - 10:08:33 CST)
- Eugene Leitl (Fri Nov 26 1999 - 19:39:54 CST)
People having plugin troubles, READ THIS
- John Stone (Fri Aug 30 2002 - 13:54:55 CDT)
peptide builder
- L. Michel Espinoza-Fonseca (Fri Sep 07 2007 - 11:26:41 CDT)
- Arneh Babakhani (Fri Sep 07 2007 - 10:50:23 CDT)
- Leandro Martínez (Sat Apr 22 2006 - 16:07:56 CDT)
- dimka (Sat Apr 22 2006 - 14:58:34 CDT)
- Leandro Martínez (Sat Apr 22 2006 - 12:21:04 CDT)
- John Robinson (Fri Apr 21 2006 - 15:19:01 CDT)
Per-frame 'graphics'?
- John Stone (Sat Nov 01 2008 - 10:12:56 CDT)
- Axel Kohlmeyer (Fri Oct 31 2008 - 16:59:44 CDT)
- Benjamin Bouvier (Fri Oct 31 2008 - 13:36:24 CDT)
- Benjamin Bouvier (Fri Oct 31 2008 - 10:46:03 CDT)
- Rogan Carr (Fri Oct 31 2008 - 11:22:55 CDT)
per-residue alignment
- Toni Giorgino (Fri Dec 10 2010 - 09:05:01 CST)
- Antonija Tomiæ (Wed Dec 01 2010 - 02:24:33 CST)
Percentage Helicity calculation in VMD
- John Stone (Sat Feb 02 2008 - 15:30:18 CST)
- Peter Freddolino (Sat Feb 02 2008 - 08:42:40 CST)
- aneesh cna (Fri Feb 01 2008 - 03:18:53 CST)
- Axel Kohlmeyer (Thu Jan 31 2008 - 23:37:28 CST)
- aneesh cna (Thu Jan 31 2008 - 22:54:53 CST)
Periodic BC
- Olaf Lenz (Tue Sep 23 2008 - 02:47:30 CDT)
- Nd S (Mon Sep 22 2008 - 15:26:20 CDT)
Periodic Bonding
- Bishop, Thomas C (Thu Aug 13 2009 - 14:46:24 CDT)
- Olaf Lenz (Wed Aug 12 2009 - 10:56:53 CDT)
- Axel Kohlmeyer (Wed Aug 12 2009 - 09:42:00 CDT)
- Liang, Linus H. (Wed Aug 12 2009 - 08:44:19 CDT)
Periodic boundary conditions
- Justin Gullingsrud (Thu Aug 18 2005 - 13:43:38 CDT)
- Bob Johnson (Thu Aug 18 2005 - 12:00:19 CDT)
periodic boundary conditions (yes, i read the tutorials)
- John Stone (Tue Jul 29 2008 - 13:22:57 CDT)
- Balazs Jojart (Tue Jul 29 2008 - 01:21:17 CDT)
- Axel Kohlmeyer (Mon Jul 28 2008 - 20:44:41 CDT)
- Roman Petrenko (Mon Jul 28 2008 - 19:50:12 CDT)
- Roman Petrenko (Mon Jul 28 2008 - 19:46:09 CDT)
Periodic box display feature suggestion
- Axel Kohlmeyer (Mon Jan 10 2005 - 15:00:47 CST)
- Marc Baaden (Sat Jan 08 2005 - 12:41:13 CST)
periodic box image in tcl script
- John Stone (Tue Oct 07 2008 - 13:22:02 CDT)
- Brian Kidd (Mon Sep 29 2008 - 11:27:39 CDT)
periodic box lines
- John Stone (Mon Dec 01 2003 - 12:43:36 CST)
- Anna Modzelewska (Mon Dec 01 2003 - 06:50:05 CST)
periodic box manipulation
- Vlad Cojocaru (Fri Oct 26 2007 - 07:39:58 CDT)
periodic box manipulation (solution)
- Vlad Cojocaru (Fri Oct 26 2007 - 09:04:03 CDT)
Periodic builder?
- John Stone (Wed Aug 09 2006 - 13:36:16 CDT)
- andras.borosy_at_givaudan.com (Tue Aug 08 2006 - 07:26:51 CDT)
periodic display and space group and VMD
- Axel Kohlmeyer (Tue Jul 06 2004 - 14:18:34 CDT)
- John Stone (Tue Jul 06 2004 - 10:28:43 CDT)
- Pawel Sikorski (Tue Jul 06 2004 - 09:24:40 CDT)
Periodic display problem
- John Stone (Thu Aug 26 2004 - 14:04:59 CDT)
- John Stone (Wed Aug 25 2004 - 10:18:51 CDT)
- Axel Kohlmeyer (Wed Aug 25 2004 - 01:52:26 CDT)
- John Stone (Tue Aug 24 2004 - 12:44:43 CDT)
- John Stone (Tue Aug 24 2004 - 10:13:25 CDT)
- Axel Kohlmeyer (Tue Aug 24 2004 - 09:56:02 CDT)
- John Stone (Tue Aug 24 2004 - 09:29:15 CDT)
- Keith Refson (Tue Aug 24 2004 - 05:34:31 CDT)
Periodic image and transformation matrix
- Axel Kohlmeyer (Mon Jul 21 2008 - 19:50:24 CDT)
- Cesar Avila (Mon Jul 21 2008 - 19:20:06 CDT)
Periodic Images
- John Stone (Mon Mar 22 2004 - 11:40:42 CST)
- Joshua A. Speidel (Fri Mar 19 2004 - 14:10:07 CST)
- Justin Gullingsrud (Tue Jul 29 2003 - 11:38:15 CDT)
- J. Rui Rodrigues (Tue Jul 29 2003 - 11:43:23 CDT)
periodic images for trajectory
- Olaf Lenz (Wed Feb 27 2008 - 04:59:30 CST)
- Axel Kohlmeyer (Wed Feb 27 2008 - 05:07:04 CST)
- Jennifer Williams (Wed Feb 27 2008 - 04:18:56 CST)
periodic woes
- Jan Saam (Fri Sep 12 2003 - 04:42:09 CDT)
- Lubos Vrbka (Thu Sep 11 2003 - 16:34:59 CDT)
- Scott Stagg (Thu Sep 11 2003 - 15:07:33 CDT)
Perspective Ratio Problems
- John Stone (Wed Jan 28 2004 - 14:59:21 CST)
- Matt Elder (Wed Jan 28 2004 - 12:41:54 CST)
PET force field & topolgy files
- wolfinbm_at_uci.edu (Wed Dec 27 2006 - 17:24:59 CST)
Phantom and VMD
- John Stone (Mon Sep 20 2004 - 15:58:40 CDT)
- Adam Kubach (Mon Sep 20 2004 - 15:18:18 CDT)
Phantom Omni Haptic Device
- John Stone (Mon Jan 07 2008 - 01:49:31 CST)
- Martin Held (Sun Jan 06 2008 - 15:00:47 CST)
Phantom on Sgi?
- John Stone (Wed Aug 14 2002 - 10:16:58 CDT)
- Kenneth Ayers (Wed Aug 14 2002 - 08:41:13 CDT)
PhD position in Computational Structural Biology at MPI Muenster
- Axel Kohlmeyer (Sun May 15 2011 - 16:47:40 CDT)
- Gianluca Interlandi (Sun May 15 2011 - 14:42:22 CDT)
- Vlad Cojocaru (Sun May 15 2011 - 13:47:01 CDT)
- Axel Kohlmeyer (Sun May 15 2011 - 11:51:22 CDT)
- Olaf Lenz (Sun May 15 2011 - 10:34:40 CDT)
- Bjoern Olausson (Fri May 13 2011 - 13:23:05 CDT)
- Wendy González (Fri May 13 2011 - 07:54:29 CDT)
- Ajasja LjubetiÄ (Fri May 13 2011 - 07:04:26 CDT)
- Vlad Cojocaru (Fri May 13 2011 - 04:49:14 CDT)
phi and psi information
- Axel Kohlmeyer (Thu Jun 23 2005 - 04:09:59 CDT)
- nordgren_at_sas.upenn.edu (Thu Jun 23 2005 - 04:02:50 CDT)
- matteo.pennestri_at_virgilio.it (Thu Jun 23 2005 - 00:55:54 CDT)
phi-psi plot
- Ajasja LjubetiÄ (Mon Mar 28 2011 - 08:08:32 CDT)
- Ramya Narasimhan (Mon Mar 28 2011 - 05:29:01 CDT)
Phonon spectrum and VACF
- Axel Kohlmeyer (Tue Dec 14 2010 - 13:08:07 CST)
- jj mm (Tue Dec 14 2010 - 12:09:38 CST)
- Axel Kohlmeyer (Thu Dec 09 2010 - 05:26:13 CST)
- jj mm (Thu Dec 09 2010 - 03:11:03 CST)
Phosphate mass
- John Stone (Tue Sep 28 2004 - 09:55:29 CDT)
- Manuel Rueda (Tue Sep 28 2004 - 08:43:52 CDT)
- Manuel Rueda (Tue Sep 28 2004 - 07:55:44 CDT)
phosphorylation modelling
- Zhang, Jiong (MU-Student) (Mon Sep 13 2010 - 15:11:49 CDT)
pick atom id script
- Abu Naser (Fri Jul 11 2008 - 06:07:05 CDT)
- David Tanner (Fri Jul 11 2008 - 09:32:53 CDT)
- Axel Kohlmeyer (Fri Jul 11 2008 - 09:37:49 CDT)
Picking atoms
- Olaf Lenz (Fri Jul 16 2004 - 10:06:46 CDT)
Picking atoms: romoving or changing the position of atoms
- Olaf Lenz (Tue Jul 20 2004 - 12:11:17 CDT)
- Albert Sun (Mon Jul 19 2004 - 11:51:50 CDT)
- John Stone (Mon Jul 19 2004 - 10:11:32 CDT)
- Olaf Lenz (Mon Jul 19 2004 - 03:44:44 CDT)
- Albert Sun (Sun Jul 18 2004 - 09:17:00 CDT)
picture/resid color
- John Stone (Tue Apr 02 2002 - 11:18:55 CST)
- Peter Varnai (Tue Apr 02 2002 - 11:11:36 CST)
Pictures
- John Stone (Fri Dec 21 2001 - 11:08:48 CST)
- Sanjeev B.S. (Fri Dec 21 2001 - 10:55:12 CST)
pictures with frame
- Mario Valle (Tue Feb 03 2009 - 02:56:50 CST)
- BIN ZHANG (Tue Feb 03 2009 - 01:40:32 CST)
pictures with frame (corrected)
- Mario Valle (Tue Feb 03 2009 - 02:58:39 CST)
pKa and Temperature in MD
- Caterina Bernini (Tue Mar 31 2009 - 14:47:39 CDT)
Play at the world's leading online casino.....
- Bobbie Horton (Thu Apr 10 2008 - 01:28:24 CDT)
- Ned Roy (Wed Apr 09 2008 - 01:14:11 CDT)
Playing part of a trajectory using TCL
- John Stone (Wed May 03 2006 - 18:06:12 CDT)
- David Chalmers (Tue May 02 2006 - 05:30:37 CDT)
Please unsubscribe me from VMD mailing list
- Scott W. Sides (Wed Jun 14 2000 - 11:39:20 CDT)
please, give me a tip
- Axel Kohlmeyer (Tue Jul 11 2006 - 11:24:20 CDT)
- Leonardo Trabuco (Tue Jul 11 2006 - 11:05:57 CDT)
- Yuri Nedialkov (Tue Jul 11 2006 - 10:02:20 CDT)
Please, help
- Peter Freddolino (Mon Jul 10 2006 - 17:14:17 CDT)
- Yuri Nedialkov (Mon Jul 10 2006 - 13:48:35 CDT)
Plot a time line in the movie made with VMD
- Bogdan Costescu (Wed Dec 01 2010 - 15:44:56 CST)
- ABEL Stephane 175950 (Wed Dec 01 2010 - 11:08:39 CST)
plot color scale for volume slice
- John Stone (Sun Nov 07 2004 - 21:02:23 CST)
- YAMAZAKI Takeshi (Sat Nov 06 2004 - 16:12:28 CST)
plot residues without hydrogen atoms
- Peter Freddolino (Tue May 20 2008 - 08:13:32 CDT)
- Axel Kohlmeyer (Tue May 20 2008 - 07:40:19 CDT)
- ABEL Stephane 175950 (Tue May 20 2008 - 07:02:41 CDT)
plot the box margins
- Olaf Lenz (Wed Jan 10 2007 - 03:11:40 CST)
- wurl (Wed Jan 10 2007 - 02:40:35 CST)
Plot the value of the current frame in the Progress Bar for elapsed Time
- Axel Kohlmeyer (Thu Dec 02 2010 - 10:47:31 CST)
- ABEL Stephane 175950 (Thu Dec 02 2010 - 09:51:44 CST)
Plotting elect. pot. surface
- Alan Wilter Sousa da Silva (Wed Mar 13 2002 - 08:05:14 CST)
- John Stone (Wed Feb 27 2002 - 01:34:49 CST)
- Alan Wilter Sousa da Silva (Tue Feb 26 2002 - 14:16:22 CST)
- John Stone (Mon Feb 25 2002 - 17:26:28 CST)
- Laurence F. Wood (Mon Feb 25 2002 - 17:20:34 CST)
- John Stone (Mon Feb 25 2002 - 13:25:22 CST)
- John Stone (Mon Feb 25 2002 - 13:17:44 CST)
- Alan Wilter Sousa da Silva (Mon Feb 25 2002 - 14:40:57 CST)
- John Stone (Mon Feb 25 2002 - 11:27:53 CST)
- Alan Wilter Sousa da Silva (Mon Feb 25 2002 - 12:15:52 CST)
Plotting Number of Hbonds and % Helicity with Time
- Axel Kohlmeyer (Sat Nov 11 2006 - 18:57:25 CST)
- Adelene Sim (Sat Nov 11 2006 - 18:11:22 CST)
Plotting of Co-ordinates on VMD
- Barry Isralewitz (Fri Mar 30 2012 - 14:25:06 CDT)
- Jeffrey Potoff (Fri Mar 30 2012 - 14:04:27 CDT)
- Axel Kohlmeyer (Fri Mar 30 2012 - 12:49:51 CDT)
- james Fernandez (Fri Mar 30 2012 - 11:37:07 CDT)
plotting on Mac
- Claw Isthelaw (Sat Aug 11 2007 - 19:53:35 CDT)
- John Stone (Fri Aug 10 2007 - 15:11:43 CDT)
- Alison Grinthal (Fri Aug 10 2007 - 14:50:11 CDT)
Plotting potential energy
- Axel Kohlmeyer (Thu Dec 09 2010 - 05:27:57 CST)
- Joyce Tan (Thu Dec 09 2010 - 03:36:19 CST)
plotting spin density
- Axel Kohlmeyer (Thu May 05 2011 - 22:45:20 CDT)
- Olesya Haze (Thu May 05 2011 - 18:17:50 CDT)
plotting wave functions
- John Stone (Thu Apr 10 2003 - 19:27:36 CDT)
- Ioana Cozmuta (Thu Apr 10 2003 - 18:45:23 CDT)
plotting x y z data
- Luis Gracia (Thu May 04 2006 - 08:14:27 CDT)
- Prof. Y. U. Sasidhar (Thu May 04 2006 - 07:12:57 CDT)
- Axel Kohlmeyer (Thu May 04 2006 - 07:01:39 CDT)
- Prof. Y. U. Sasidhar (Thu May 04 2006 - 02:14:38 CDT)
Ployhedra in VMD
- John Stone (Mon Sep 26 2005 - 18:20:28 CDT)
- Jen-Chang Chen (Mon Sep 26 2005 - 07:56:53 CDT)
- John Stone (Thu Sep 15 2005 - 11:11:25 CDT)
- Jen-Chang Chen (Wed Sep 14 2005 - 03:58:30 CDT)
Pls help me to render files with only traces of proteins!
- Mauricio Carrillo Tripp (Thu Feb 06 2003 - 08:06:38 CST)
- B. Bennion (Thu Feb 06 2003 - 13:23:01 CST)
- Margaret Cheung (Thu Feb 06 2003 - 11:12:19 CST)
- John Stone (Thu Feb 06 2003 - 10:53:38 CST)
- John Stone (Thu Feb 06 2003 - 10:51:46 CST)
- Margaret Cheung (Wed Feb 05 2003 - 23:41:50 CST)
- B. Bennion (Wed Feb 05 2003 - 21:13:34 CST)
- Margaret Cheung (Wed Feb 05 2003 - 19:48:33 CST)
- John Stone (Wed Feb 05 2003 - 19:28:31 CST)
- Margaret Cheung (Wed Feb 05 2003 - 19:06:41 CST)
Pls help me to render files with only traces of proteins!]
- John Stone (Thu Feb 06 2003 - 13:55:43 CST)
Pls help, Q abt PDB->PSF
- Peter Freddolino (Sun Jan 28 2007 - 00:38:29 CST)
- Stanley, Yemin Shi (Sat Jan 27 2007 - 21:55:02 CST)
PLT file format?
- John Stone (Tue Jul 15 2003 - 23:16:39 CDT)
- Dallas Warren (Tue Jul 15 2003 - 17:58:30 CDT)
- John Stone (Thu Jul 03 2003 - 13:58:53 CDT)
- John Stone (Tue Jun 24 2003 - 10:46:43 CDT)
- Dallas Warren (Thu Jun 19 2003 - 16:39:43 CDT)
- John Stone (Thu Jun 19 2003 - 11:03:28 CDT)
- Dallas Warren (Wed Jun 18 2003 - 01:55:31 CDT)
plt plugin found
- Oliver Beckstein (Tue Nov 25 2003 - 09:33:14 CST)
plt plugin missing (?)
- Oliver Beckstein (Tue Nov 25 2003 - 09:14:51 CST)
plug-in for multiple frame xyz files
- John Stone (Mon Feb 10 2003 - 14:32:39 CST)
- Luca UvA (Mon Feb 10 2003 - 04:17:08 CST)
plugin
- Axel Kohlmeyer (Mon Sep 05 2011 - 14:37:19 CDT)
- kirtana S (Mon Sep 05 2011 - 13:38:47 CDT)
plugin : membrane builder : "integer value too large to represent"
- Lepore, Bryan (Wed Aug 18 2010 - 17:40:37 CDT)
- John Stone (Wed Aug 18 2010 - 13:07:13 CDT)
- Lepore, Bryan (Wed Aug 18 2010 - 10:21:07 CDT)
Plugin compilation
- Axel Kohlmeyer (Mon May 15 2006 - 13:07:50 CDT)
- John Stone (Mon May 15 2006 - 12:13:49 CDT)
- angel (Fri May 12 2006 - 16:19:47 CDT)
Plugin compilation problem
- John Stone (Thu May 18 2006 - 17:57:48 CDT)
- angel (Thu May 18 2006 - 17:41:16 CDT)
plugin for Abinit output files
- John Stone (Sun Oct 17 2010 - 17:54:20 CDT)
- Rob (Sun Sep 26 2010 - 23:45:15 CDT)
- Rob (Sun Sep 26 2010 - 23:36:52 CDT)
- John Stone (Sun Sep 19 2010 - 20:18:56 CDT)
- Rob (Sat Aug 28 2010 - 03:22:05 CDT)
plugin for reading (and writing) trajectories with a varying number of atoms
- Axel Kohlmeyer (Fri Nov 06 2009 - 14:51:02 CST)
Plugin Issue
- John Stone (Sat Mar 31 2007 - 00:19:20 CDT)
- Luis Gracia (Wed Mar 28 2007 - 13:14:40 CDT)
- John Stone (Wed Mar 28 2007 - 11:13:06 CDT)
- James Keener (Wed Mar 28 2007 - 09:45:18 CDT)
plugin problem
- John Stone (Tue Aug 30 2005 - 10:14:13 CDT)
- bybaker_at_itsa.ucsf.edu (Tue Aug 30 2005 - 01:17:45 CDT)
plugin problems
- John Stone (Tue Jul 16 2002 - 14:45:39 CDT)
plugin source tree
- John Stone (Thu Dec 08 2005 - 15:15:35 CST)
- Cojocaru,Vlad (Thu Dec 08 2005 - 14:57:46 CST)
Plugin testing
- B. Bennion (Thu Jun 06 2002 - 12:07:05 CDT)
plugin: can I load volumetric data as frames (i.e. timesteps)?
- John Stone (Wed Jun 10 2009 - 11:12:17 CDT)
- Ondrej Marsalek (Wed Jun 10 2009 - 11:28:26 CDT)
- Ondrej Marsalek (Wed Jun 10 2009 - 10:09:03 CDT)
- John Stone (Wed Jun 10 2009 - 09:43:20 CDT)
- Axel Kohlmeyer (Wed Jun 10 2009 - 08:16:58 CDT)
- Ondrej Marsalek (Wed Jun 10 2009 - 07:54:05 CDT)
- John Stone (Wed Jun 10 2009 - 07:24:05 CDT)
- Rob (Wed Jun 10 2009 - 03:11:34 CDT)
Plugin: molfile_plugin_t filename_extension; problem and bug...
- John Stone (Mon May 25 2009 - 23:28:34 CDT)
- Axel Kohlmeyer (Mon May 25 2009 - 09:52:04 CDT)
- Rob (Sun May 24 2009 - 22:39:33 CDT)
Plugins and did I compile VMD correctly?
- John Stone (Thu Aug 12 2004 - 18:13:01 CDT)
- Stephen Montgomery-Smith (Thu Aug 12 2004 - 16:51:42 CDT)
- John Stone (Thu Aug 12 2004 - 16:14:01 CDT)
- Stephen Montgomery-Smith (Thu Aug 12 2004 - 11:05:49 CDT)
plugins compilation problem - gcc switches
- John Stone (Wed May 25 2005 - 10:26:12 CDT)
- Mgr. Lubos Vrbka (Wed May 25 2005 - 09:19:25 CDT)
Plugins Problem with 1.8.1b2
- John Stone (Mon May 12 2003 - 11:03:23 CDT)
- Patrick Ladam (Mon May 12 2003 - 04:08:14 CDT)
Plugins update
- John Stone (Tue Aug 23 2005 - 09:41:09 CDT)
- floquet_at_icsn.cnrs-gif.fr (Tue Aug 23 2005 - 04:00:39 CDT)
Plugins use after compilation question
- Axel Kohlmeyer (Mon Feb 27 2012 - 13:30:49 CST)
- Anthony Cruz Balberdi (Mon Feb 27 2012 - 12:38:01 CST)
Plugins...
- John Stone (Sat May 07 2005 - 11:31:35 CDT)
- Luis Rosales (Fri May 06 2005 - 19:31:11 CDT)
plugins/hesstrans/Makefile recurses on CXXFLAGS
- John Stone (Wed Mar 21 2012 - 11:15:38 CDT)
- Benjamin Kaduk (Mon Mar 19 2012 - 21:42:36 CDT)
Plugins: plz add one more conversion to unit_conversion.h
- John Stone (Mon Jun 22 2009 - 14:54:33 CDT)
- Rob (Sun Jun 21 2009 - 21:00:57 CDT)
PME isosurface not superimposed on protein
- Irene Newhouse (Mon Jan 11 2010 - 17:17:50 CST)
- Axel Kohlmeyer (Mon Jan 11 2010 - 16:59:59 CST)
- Irene Newhouse (Mon Jan 11 2010 - 16:20:50 CST)
PME plugin
- John Stone (Tue Jun 12 2007 - 16:48:54 CDT)
- Cesar Luis Avila (Tue Jun 12 2007 - 11:22:26 CDT)
- Cesar Luis Avila (Tue Jun 12 2007 - 11:18:47 CDT)
PME units
- Cesar Luis Avila (Tue Oct 03 2006 - 15:05:17 CDT)
- Jim Phillips (Tue Oct 03 2006 - 14:47:35 CDT)
- Francesco Iori (Tue Oct 03 2006 - 11:36:54 CDT)
PME values
- Jim Phillips (Wed Aug 24 2005 - 15:27:43 CDT)
- floquet_at_icsn.cnrs-gif.fr (Tue Aug 23 2005 - 09:38:16 CDT)
PMEpot + bigDCD ?
- Cesar Luis Avila (Wed Sep 05 2007 - 15:08:00 CDT)
PMEpot units
- jirasak wong-ekkabut (Thu Oct 30 2008 - 15:10:05 CDT)
pmf calculation
- Swarna Patra (Mon Jan 10 2005 - 19:29:24 CST)
PMF vs distance plot from isosurface
- Aaron Oakley (Tue Dec 14 2010 - 22:17:48 CST)
PNY Quadro4 980XGL Card
- John Stone (Wed Feb 05 2003 - 12:40:35 CST)
- Jill Vickery (Wed Feb 05 2003 - 11:47:55 CST)
polar coordinates
- John Stone (Wed Nov 27 2002 - 12:34:10 CST)
- Peter VARNAI (Wed Nov 27 2002 - 11:52:10 CST)
polar surface area with VMD!
- John Stone (Mon Jul 12 2004 - 10:10:04 CDT)
- Ramesh Sistla (Mon Jul 12 2004 - 13:22:48 CDT)
polyethylene topology
- Arturas Ziemys (Tue Dec 05 2006 - 12:05:57 CST)
Polyhedra with two selections?
- John Stone (Mon Nov 30 2009 - 09:54:00 CST)
- Axel Kohlmeyer (Mon Nov 30 2009 - 05:10:54 CST)
- Georg Spiekermann (Mon Nov 30 2009 - 04:01:12 CST)
polymer bead spring model file format
- Joshua Adelman (Wed Nov 18 2009 - 06:48:36 CST)
- Olaf Lenz (Wed Nov 18 2009 - 02:20:38 CST)
- Axel Kohlmeyer (Tue Nov 17 2009 - 12:40:49 CST)
- Ding, L. (Tue Nov 17 2009 - 11:15:50 CST)
Polymer Building in VMD
- Gkourmpis, Thomas (Tue May 22 2012 - 08:21:12 CDT)
polymer molecule orientation parameter
- Catherine Tweedie (Mon Sep 10 2007 - 13:45:11 CDT)
polynucleotide builder
- Jacob Pøhlsgaard (Mon Apr 24 2006 - 04:31:54 CDT)
- L. Michel Espinoza-Fonseca (Mon Apr 24 2006 - 02:15:31 CDT)
- Jean Richelle (Sun Apr 23 2006 - 17:05:17 CDT)
Poor Hydrogen Placement in AutoPSF
- Peter Freddolino (Mon Mar 20 2006 - 17:00:30 CST)
- Brian Bennion (Mon Mar 20 2006 - 16:54:20 CST)
- Peter Freddolino (Mon Mar 20 2006 - 16:50:03 CST)
- Peter Freddolino (Mon Mar 20 2006 - 13:09:04 CST)
- Brian Bennion (Mon Mar 20 2006 - 10:27:52 CST)
- Peter Freddolino (Sun Mar 19 2006 - 14:51:49 CST)
- Brian Bennion (Fri Mar 17 2006 - 16:39:15 CST)
Poor man's stereolithography
- Samuel C Flores (Thu Nov 30 2006 - 12:37:04 CST)
- John Stone (Thu Nov 30 2006 - 10:42:08 CST)
- Morizono, Hiroki (Thu Nov 30 2006 - 09:07:51 CST)
poorly get coordinates
- JC Gumbart (Thu Oct 13 2005 - 13:43:01 CDT)
- Samuel Flores (Thu Oct 13 2005 - 13:17:42 CDT)
POPC from charmm27 to charmm36
- Raul Araya (Fri Aug 20 2010 - 18:43:00 CDT)
POPC lipid parameters reference
- Ravinder Abrol (Mon Jan 02 2006 - 18:46:45 CST)
- Taeho Kim (Mon Jan 02 2006 - 09:41:55 CST)
- Ravinder Abrol (Wed Dec 28 2005 - 15:47:31 CST)
POPE CHARMM36 generations error.
- Axel Kohlmeyer (Thu Nov 24 2011 - 14:46:47 CST)
- mail gromacs (Thu Nov 24 2011 - 13:13:02 CST)
POPS topology file
- lucie huynh (Mon Nov 12 2007 - 03:55:04 CST)
pops/popc lipid bilayer
- Jianping Lin (Wed Mar 11 2009 - 19:32:42 CDT)
porcupine plot
- Benjamin Hall (Thu Apr 03 2008 - 12:00:11 CDT)
- John Stone (Wed Apr 02 2008 - 23:41:12 CDT)
- Benjamin Hall (Wed Apr 02 2008 - 17:30:49 CDT)
- Oliver Beckstein (Wed Apr 02 2008 - 16:46:40 CDT)
- Axel Kohlmeyer (Mon Mar 31 2008 - 04:01:53 CDT)
- SWAPNA (Mon Mar 31 2008 - 01:06:36 CDT)
- John Stone (Mon Mar 31 2008 - 01:22:18 CDT)
porcupine plots for PC1
- Carsten Olbrich (Thu Dec 10 2009 - 04:43:03 CST)
- Joshua Adelman (Mon Dec 07 2009 - 06:49:11 CST)
- Joshua Adelman (Sun Dec 06 2009 - 15:22:06 CST)
- Dawn (Sun Dec 06 2009 - 13:29:19 CST)
Porcupine update
- Carsten Olbrich (Wed Feb 17 2010 - 03:03:27 CST)
Pore volume/radius in protein bundles
- John Stone (Fri May 28 2004 - 19:10:15 CDT)
- Vani Krishna (Thu May 27 2004 - 11:57:34 CDT)
porsche design is your style;
- Fletcher Quick (Thu Jun 18 2009 - 14:18:17 CDT)
position of protein respect to membrane
- andrea spitaleri (Tue Sep 27 2005 - 04:00:31 CDT)
- andrea spitaleri (Tue Sep 27 2005 - 03:41:35 CDT)
- John Stone (Mon Sep 26 2005 - 10:26:59 CDT)
- andrea spitaleri (Mon Sep 26 2005 - 09:35:10 CDT)
positioning a protein with trans etc.
- Marc Baaden (Wed Oct 30 2002 - 11:52:09 CST)
- John Stone (Wed Oct 30 2002 - 10:02:35 CST)
- Marc Baaden (Wed Oct 30 2002 - 05:33:26 CST)
- Stéphane Teletchéa (Wed Oct 30 2002 - 02:26:36 CST)
- Marc Baaden (Tue Oct 29 2002 - 16:02:55 CST)
- John Stone (Tue Oct 29 2002 - 15:56:18 CST)
- Marc Baaden (Tue Oct 29 2002 - 12:59:56 CST)
positioning of a compound
- Esteban Gabriel Vega Hissi (Wed Aug 12 2009 - 16:07:37 CDT)
- Steve Seibold (Wed Aug 12 2009 - 15:11:00 CDT)
- jen hsin (Wed Aug 12 2009 - 15:02:15 CDT)
- John Stone (Wed Aug 12 2009 - 14:59:04 CDT)
- Steve Seibold (Wed Aug 12 2009 - 14:48:23 CDT)
positively charged portion of the protein surface
- Thomas Evangelidis (Thu Mar 08 2012 - 06:23:20 CST)
Possible bug in freeing global selections
- Ajasja LjubetiÄ (Thu Oct 28 2010 - 17:23:16 CDT)
- Ajasja LjubetiÄ (Thu Oct 28 2010 - 13:05:33 CDT)
- Axel Kohlmeyer (Thu Oct 28 2010 - 13:11:30 CDT)
- Axel Kohlmeyer (Thu Oct 28 2010 - 09:22:13 CDT)
- Ajasja LjubetiÄ (Thu Oct 28 2010 - 08:16:14 CDT)
- Ajasja LjubetiÄ (Thu Oct 28 2010 - 06:56:02 CDT)
Possible bug in LAMMPS plugin
- John Stone (Fri Oct 13 2006 - 16:53:56 CDT)
- Lutz Maibaum (Thu Oct 05 2006 - 19:11:56 CDT)
- Marco Kalweit (Thu Oct 05 2006 - 16:48:28 CDT)
- Lutz Maibaum (Thu Oct 05 2006 - 12:44:30 CDT)
- Marco Kalweit (Thu Oct 05 2006 - 10:06:25 CDT)
- John Stone (Wed Oct 04 2006 - 00:24:11 CDT)
- Lutz Maibaum (Tue Oct 03 2006 - 11:49:23 CDT)
- Lutz Maibaum (Mon Oct 02 2006 - 15:10:43 CDT)
Possible bug in vmd 1.8.7 alpha?
- John Stone (Sat Apr 18 2009 - 17:02:20 CDT)
- Axel Kohlmeyer (Sat Apr 18 2009 - 10:15:24 CDT)
- Cesar Millan (Sat Apr 18 2009 - 00:09:57 CDT)
possible chain select bug on RCSB ".ent" files
- Thomas C. Bishop (Mon Jul 05 2010 - 10:08:27 CDT)
- Leonardo Trabuco (Mon Jul 05 2010 - 09:46:18 CDT)
- Thomas C. Bishop (Mon Jul 05 2010 - 09:30:09 CDT)
Possible error in aligning/computing RMSD of 2 molecules with three or two atoms
- John Stone (Sun Mar 26 2006 - 23:58:57 CST)
- Visvaldas Kairys (Fri Mar 24 2006 - 03:45:51 CST)
- Jan Saam (Thu Mar 23 2006 - 18:36:28 CST)
- Brian Bennion (Thu Mar 23 2006 - 17:22:15 CST)
- Jan Saam (Thu Mar 23 2006 - 16:17:29 CST)
- Jan Saam (Thu Mar 23 2006 - 16:11:55 CST)
- John Stone (Thu Mar 23 2006 - 15:55:38 CST)
- Jan Saam (Thu Mar 23 2006 - 15:30:53 CST)
- Visvaldas Kairys (Thu Mar 23 2006 - 13:38:09 CST)
possible memory leak with pbc wrap
- John Stone (Tue Feb 28 2012 - 14:20:14 CST)
- Ana Celia Vila Verde (Fri Feb 24 2012 - 09:16:59 CST)
Possible MPI code problem (and fix)
- John Stone (Thu Mar 29 2012 - 09:58:15 CDT)
- Christoph Willing (Thu Mar 29 2012 - 07:30:12 CDT)
Possible values for "select_method"?
- John Stone (Mon Jan 10 2005 - 17:01:31 CST)
- Chang, Christopher (Mon Jan 10 2005 - 16:48:27 CST)
Postdoc position available...
- John Stone (Sat May 31 2008 - 01:06:59 CDT)
Postdoc position in computational biophysics and nanotehnology
- Aleksei Aksimentiev (Tue May 05 2009 - 14:28:20 CDT)
Postdoctoral positions in Australia
- Brendan O'Malley (Wed Nov 06 2002 - 04:55:13 CST)
Posting messages to VMD-L truncates the empty spaces in lines
- Rogan Carr (Wed Mar 18 2009 - 16:12:37 CDT)
- JT (Tue Mar 17 2009 - 22:05:43 CDT)
- John Stone (Mon Mar 16 2009 - 20:41:58 CDT)
- JT (Mon Mar 16 2009 - 20:31:09 CDT)
- John Stone (Mon Mar 16 2009 - 17:49:34 CDT)
- JT (Sun Mar 15 2009 - 18:58:01 CDT)
pot.dx file question
- Robin Varghese (Sat Feb 26 2011 - 15:42:04 CST)
Pot.dx files
- John Stone (Sun Feb 27 2011 - 22:54:11 CST)
- Robin Varghese (Sat Feb 26 2011 - 17:18:56 CST)
- Robin Varghese (Sat Feb 26 2011 - 17:37:37 CST)
- Axel Kohlmeyer (Sat Feb 26 2011 - 17:29:50 CST)
- Axel Kohlmeyer (Sat Feb 26 2011 - 15:50:57 CST)
- Robin Varghese (Sat Feb 26 2011 - 15:02:14 CST)
pot.dx question
- Robin Varghese (Sat Feb 26 2011 - 15:43:35 CST)
Potential map animation, help!
- Cesar Millan (Tue Nov 20 2007 - 12:40:59 CST)
- John Stone (Tue Nov 20 2007 - 13:05:25 CST)
Potential map display in VMD (GRASP)
- John Stone (Mon Oct 03 2005 - 13:57:10 CDT)
- John Stone (Thu Sep 29 2005 - 00:19:00 CDT)
- Anton B. Guliaev (Wed Sep 28 2005 - 18:33:59 CDT)
potential surface
- John Stone (Wed Feb 23 2005 - 16:46:15 CST)
- matteo.pennestri_at_virgilio.it (Wed Feb 23 2005 - 16:35:00 CST)
POV failure 2nd try
- John Stone (Fri May 26 2000 - 13:24:42 CDT)
- Keith Refson (Fri May 26 2000 - 13:09:04 CDT)
POV render fails 2nd time
- David Norris (Fri May 26 2000 - 15:15:51 CDT)
- Keith Refson (Fri May 26 2000 - 13:00:39 CDT)
POV renderer and volume coloring problem
- John Stone (Thu Nov 11 2010 - 07:53:50 CST)
- Guido Polles (Thu Nov 11 2010 - 05:33:00 CST)
POV-Ray
- John Stone (Wed Nov 12 2003 - 17:23:27 CST)
- Alexandre Vakhrouchev (Wed Nov 12 2003 - 03:33:03 CST)
- Felix Frolow (Wed Nov 12 2003 - 01:57:42 CST)
- Tauna Rignall (Tue Nov 11 2003 - 11:19:33 CST)
- John Stone (Mon Nov 10 2003 - 13:17:30 CST)
- Tauna Rignall (Fri Nov 07 2003 - 14:42:13 CST)
POV-Ray 3.6; VMD Movie Maker; Continuous Render (UNCLASSIFIED)
- Igor Schapiro (Fri Jan 11 2008 - 07:23:57 CST)
- Paul, Kristian (Cont, ARL/WMRD) (Thu Jan 10 2008 - 12:16:16 CST)
Povray & color gradients
- John Stone (Mon Nov 29 2004 - 00:31:16 CST)
- Luis Rosales (Wed Nov 24 2004 - 16:35:55 CST)
- Tatyana I. Igumenova (Wed Nov 24 2004 - 11:28:45 CST)
povray images allways perspective?
- John Stone (Thu Dec 14 2000 - 12:45:27 CST)
- Lothar Esser (Thu Dec 14 2000 - 11:57:57 CST)
- Barry Isralewitz (Thu Dec 14 2000 - 11:02:29 CST)
- John Stone (Thu Dec 14 2000 - 10:51:17 CST)
- Siegmar Kardinal (Thu Dec 14 2000 - 10:43:39 CST)
povray problem: degenerate cylinder
- Amadeu (Fri May 05 2006 - 09:48:43 CDT)
- John Stone (Fri May 05 2006 - 09:38:02 CDT)
- Amadeu (Fri May 05 2006 - 07:09:51 CDT)
povray problem: degenerate cylinder revisited
- John Stone (Tue Aug 14 2007 - 15:42:08 CDT)
- Robin L Hayes (Fri Aug 10 2007 - 17:22:37 CDT)
Povray render cuts litorice,bond,cpk representations
- schwarz_at_titus.u-strasbg.fr (Thu Oct 09 2008 - 05:14:20 CDT)
povray rendering help
- Axel Kohlmeyer (Fri Jul 30 2010 - 08:41:35 CDT)
- Ramasamy, Ellankavi (Fri Jul 30 2010 - 07:45:31 CDT)
Povray renders labels always centered
- John Stone (Fri Dec 23 2011 - 17:39:06 CST)
- Bjoern Olausson (Tue Dec 13 2011 - 09:31:52 CST)
- Axel Kohlmeyer (Mon Dec 12 2011 - 10:08:49 CST)
- Bjoern Olausson (Mon Dec 12 2011 - 01:37:04 CST)
ppm files
- Carla Jamous (Tue Sep 21 2010 - 09:50:05 CDT)
- John Stone (Mon Sep 20 2010 - 07:39:03 CDT)
- John Stone (Mon Sep 20 2010 - 07:32:29 CDT)
- Carla Jamous (Mon Sep 20 2010 - 07:07:52 CDT)
- Carla Jamous (Mon Sep 20 2010 - 07:36:20 CDT)
ppmtompeg
- Axel Kohlmeyer (Wed Sep 22 2010 - 10:54:35 CDT)
- Carla Jamous (Wed Sep 22 2010 - 07:52:42 CDT)
- John Stone (Tue May 02 2006 - 10:48:16 CDT)
- James Rustad (Tue May 02 2006 - 10:39:45 CDT)
PPMTOMPEG Quality
- Axel Kohlmeyer (Thu Apr 17 2008 - 16:23:34 CDT)
- John Stone (Thu Apr 17 2008 - 16:38:16 CDT)
- Anthony Ivetac (Thu Apr 17 2008 - 14:40:15 CDT)
pqr files----
- Axel Kohlmeyer (Tue May 29 2007 - 18:49:38 CDT)
- Raul Araya (Tue May 29 2007 - 16:46:49 CDT)
PQR parser failure in pqr plugin 0.5 and pqr plugin in latest alpha
- Knut Jørgen Bjuland (Wed Aug 18 2010 - 16:14:53 CDT)
- John Stone (Wed Aug 18 2010 - 15:30:39 CDT)
- John Stone (Wed Aug 18 2010 - 13:38:40 CDT)
- Knut Jørgen Bjuland (Wed Aug 18 2010 - 09:11:21 CDT)
Prachi Singh's mail
- Daniel Barsky (Mon Jun 05 2000 - 16:35:06 CDT)
- Barry Isralewitz (Mon Jun 05 2000 - 16:19:59 CDT)
Precompiled 1.8.5 for Linux-IA64 installs with wrong flags in lib directory?
- John Stone (Thu Sep 21 2006 - 05:53:47 CDT)
- Rob (Wed Sep 20 2006 - 23:53:31 CDT)
precompiled python libraries still work for vmd 1.9
- John Stone (Fri Jan 13 2012 - 11:24:56 CST)
- maria goranovic (Fri Jan 13 2012 - 04:50:12 CST)
prefferential adsorption analysis
- Mgr. Lubos Vrbka (Fri Mar 04 2005 - 01:12:12 CST)
- John Stone (Thu Mar 03 2005 - 15:40:57 CST)
- Mgr. Lubos Vrbka (Wed Mar 02 2005 - 12:09:43 CST)
- John Stone (Thu Feb 10 2005 - 10:57:19 CST)
- Lubos Vrbka (Thu Feb 10 2005 - 02:46:53 CST)
- Lubos Vrbka (Tue Feb 08 2005 - 05:28:58 CST)
- Justin Gullingsrud (Thu Feb 03 2005 - 12:41:25 CST)
- Lubos Vrbka (Thu Feb 03 2005 - 07:52:00 CST)
- Justin Gullingsrud (Wed Feb 02 2005 - 11:41:19 CST)
- Lubos Vrbka (Wed Feb 02 2005 - 06:51:46 CST)
prepare initial structure
- oguz gurbulak (Mon Dec 01 2008 - 13:52:31 CST)
- Schreiner Eduard (Mon Dec 01 2008 - 14:16:48 CST)
preriodic box problem
- Olaf Lenz (Sat May 31 2008 - 06:20:06 CDT)
- Matthieu Chavent (Fri May 30 2008 - 10:40:00 CDT)
- L. Michel Espinoza-Fonseca (Fri May 30 2008 - 05:20:24 CDT)
- Matthieu Chavent (Fri May 30 2008 - 04:12:31 CDT)
preserving atom index or hexadecimal residue numbers after writepdb
- John Stone (Fri Jan 25 2008 - 00:12:56 CST)
- Vlad Cojocaru (Thu Jan 24 2008 - 04:44:40 CST)
Pressure and Gpressure output in NAMD
- Jim Phillips (Wed Aug 06 2003 - 15:23:41 CDT)
- Vlad Cojocaru (Wed Aug 06 2003 - 10:40:55 CDT)
Prest1ge Repl1cas ravishing repl1ca w4tches for you
- Liliana Dawson (Sat Aug 25 2007 - 12:24:44 CDT)
Prest1ge Repl1cas your source for high-quality w4tches
- Lula Miner (Thu Aug 16 2007 - 19:21:55 CDT)
Pretty Picture
- Justin Gullingsrud (Fri Jun 23 2000 - 12:18:47 CDT)
- erik vogan (Wed Jun 21 2000 - 22:24:30 CDT)
- Paul Hubbard (Wed Jun 21 2000 - 16:15:59 CDT)
Principle Component Analysis of Protein PDB Structures
- Benjamin Bouvier (Mon Feb 22 2010 - 14:43:40 CST)
- MUHAMMAD IMTIA SHAFIQ (Mon Feb 22 2010 - 14:03:47 CST)
Print and save DLPOLY HISTORY plots
- John Stone (Thu Jun 19 2008 - 23:48:06 CDT)
- mahesh naalla (Thu Jun 19 2008 - 14:08:17 CDT)
- John Stone (Thu Jun 19 2008 - 13:05:02 CDT)
- mahesh naalla (Thu Jun 19 2008 - 12:15:50 CDT)
print numerical values in a Ramachandran plot
- Rebeca García Fandiño (Wed Dec 01 2010 - 09:56:45 CST)
- Ajasja LjubetiÄ (Wed Dec 01 2010 - 01:54:32 CST)
- Rebeca García Fandiño (Tue Nov 30 2010 - 17:01:12 CST)
print results to file
- John Stone (Mon Jul 07 2003 - 18:16:26 CDT)
Printing Coordinates with Tcl/Tk
- Axel Kohlmeyer (Fri Mar 30 2012 - 13:38:57 CDT)
- Mr Bernard Ramos (Fri Mar 30 2012 - 12:16:00 CDT)
printing real 3D model using z-printer
- John Stone (Thu Feb 24 2005 - 16:28:37 CST)
- Hui-Hsu Tsai (Thu Feb 24 2005 - 14:38:04 CST)
printing timeline window with axes
- John Stone (Tue Aug 14 2007 - 14:50:19 CDT)
- hodak_at_chips.ncsu.edu (Mon Aug 13 2007 - 22:07:27 CDT)
printing to a file from a procedure to get RMSD
- Ana Celia Araujo Vila Verde (Thu Feb 02 2006 - 08:35:30 CST)
- Jérôme Hénin (Tue Jan 31 2006 - 12:57:09 CST)
- John Stone (Tue Jan 31 2006 - 10:43:23 CST)
- Ana Celia Araujo Vila Verde (Tue Jan 31 2006 - 10:28:37 CST)
Probe orientations in ILS
- John Stone (Mon Feb 22 2010 - 15:41:08 CST)
- Irene Newhouse (Mon Feb 22 2010 - 13:19:56 CST)
problem
- Barbault Florent (Fri Feb 13 2009 - 05:24:39 CST)
- Paulo E. Abreu (Wed Feb 11 2009 - 11:00:15 CST)
- Axel Kohlmeyer (Wed Feb 11 2009 - 09:01:42 CST)
- Barbault Florent (Wed Feb 11 2009 - 02:41:52 CST)
- vivek sharma (Wed Feb 09 2005 - 23:50:37 CST)
- John Stone (Wed Feb 09 2005 - 10:05:25 CST)
- vivek sharma (Wed Feb 09 2005 - 06:57:43 CST)
- Luis Gracia (Fri Oct 08 2004 - 12:53:03 CDT)
- Jorge Pikunic (Fri Oct 08 2004 - 10:29:25 CDT)
- J. Rui Rodrigues (Fri Oct 08 2004 - 10:18:30 CDT)
- vivek sharma (Fri Oct 08 2004 - 09:01:52 CDT)
- John Stone (Tue Aug 24 2004 - 09:33:01 CDT)
- vivek sharma (Tue Aug 24 2004 - 08:46:56 CDT)
problem about "mol load psf md.pdf pdb md.pdb"
- John Stone (Fri Oct 27 2006 - 13:21:31 CDT)
- Axel Kohlmeyer (Wed Oct 25 2006 - 06:19:41 CDT)
- Qiao Baofu (Wed Oct 25 2006 - 04:31:31 CDT)
problem about dowser
- Leonardo Trabuco (Sat Sep 04 2010 - 04:36:45 CDT)
- Chen, Zhihong (chenz2) (Fri Sep 03 2010 - 16:38:05 CDT)
problem about hotkey for vmd-1.8.3 windows version
- Jian Zou (Mon Jul 25 2005 - 20:47:00 CDT)
- John Stone (Mon Jul 25 2005 - 12:49:18 CDT)
- Jian Zou (Mon Jul 25 2005 - 09:44:12 CDT)
problem about running
- John Stone (Thu Apr 22 2010 - 10:36:39 CDT)
- chiloo777 777 (Sat Apr 17 2010 - 01:54:41 CDT)
problem at convert single trajectory frame to pdb
- Joyce Tan (Tue Oct 19 2010 - 22:41:27 CDT)
- Axel Kohlmeyer (Tue Oct 19 2010 - 22:04:44 CDT)
- Joyce Tan (Tue Oct 19 2010 - 21:58:16 CDT)
- John Stone (Tue Oct 19 2010 - 12:35:58 CDT)
- Axel Kohlmeyer (Tue Oct 19 2010 - 12:53:31 CDT)
- Joyce Tan (Tue Oct 19 2010 - 12:38:24 CDT)
- John Stone (Tue Oct 19 2010 - 12:03:43 CDT)
- Joyce Tan (Tue Oct 19 2010 - 11:58:00 CDT)
- John Stone (Tue Oct 19 2010 - 11:39:47 CDT)
- Nicholas Musolino (Tue Oct 19 2010 - 12:10:51 CDT)
- John Stone (Tue Oct 19 2010 - 10:45:43 CDT)
- Joyce Tan (Tue Oct 19 2010 - 11:04:36 CDT)
- Joyce Tan (Tue Oct 19 2010 - 10:36:43 CDT)
Problem building POPE membrane with plugin using CHARMM36
- JC Gumbart (Fri Oct 14 2011 - 15:09:44 CDT)
- Axel Kohlmeyer (Fri Oct 14 2011 - 13:38:52 CDT)
- Zumot, Elia Nabil (Fri Oct 14 2011 - 11:55:18 CDT)
- John Stone (Fri Oct 14 2011 - 11:37:57 CDT)
- Zumot, Elia Nabil (Fri Oct 14 2011 - 11:18:25 CDT)
- John Stone (Wed Sep 21 2011 - 11:32:57 CDT)
- JC Gumbart (Wed Sep 21 2011 - 11:44:00 CDT)
- Maggie Pruitt (Mon Sep 19 2011 - 12:19:41 CDT)
Problem building vmd 1.8.3 and destroyed usable 1.8.2 version
- John Stone (Mon Sep 26 2005 - 10:09:15 CDT)
- Dr. Seth Olsen (Mon Sep 26 2005 - 00:28:22 CDT)
problem compiling on redhat 7.0
- John Stone (Sun Oct 08 2000 - 22:49:58 CDT)
- John Duff (Sun Oct 08 2000 - 14:52:46 CDT)
- Justin Gullingsrud (Sat Oct 07 2000 - 11:03:30 CDT)
- John Duff (Sat Oct 07 2000 - 00:57:48 CDT)
problem connecting namd/vmd using charmrun/charmd
- Will Sheffler (Thu Jul 25 2002 - 13:58:39 CDT)
- Will Sheffler (Thu Jul 25 2002 - 13:19:23 CDT)
problem controlling orientation of the simulation box drawn by pbctools
- Axel Kohlmeyer (Sun Aug 10 2008 - 11:11:34 CDT)
- shiladitya_at_jncasr.ac.in (Sun Aug 10 2008 - 10:52:54 CDT)
problem creating psf
- lucie huynh (Thu Mar 29 2007 - 03:24:01 CDT)
- John Stone (Wed Mar 28 2007 - 22:27:50 CDT)
- lucie huynh (Wed Mar 28 2007 - 03:59:47 CDT)
- Peter Freddolino (Tue Mar 27 2007 - 10:45:00 CDT)
- John Stone (Tue Mar 27 2007 - 10:34:31 CDT)
- lucie huynh (Tue Mar 27 2007 - 09:54:08 CDT)
problem downloading VMD 1.8.6 source code
- Lai, Massimo (Thu Sep 18 2008 - 04:21:38 CDT)
- John Stone (Wed Sep 17 2008 - 10:40:41 CDT)
- Lai, Massimo (Wed Sep 17 2008 - 09:59:40 CDT)
problem during movie making
- gadde suneetha (Fri Mar 30 2007 - 07:44:48 CDT)
Problem finding center of mass for all the frames
- ramya narasimhan (Wed Dec 10 2008 - 04:45:35 CST)
- ramya narasimhan (Wed Dec 10 2008 - 04:26:16 CST)
- Leonardo Trabuco (Wed Dec 10 2008 - 04:34:27 CST)
- ramya narasimhan (Wed Dec 10 2008 - 01:31:38 CST)
- Schreiner Eduard (Wed Dec 10 2008 - 01:52:29 CST)
Problem Fixed
- Raymond C. Fort Jr. (Wed Oct 08 2003 - 09:26:51 CDT)
problem for saving as jpg file
- Esther Brugger (Wed Nov 01 2006 - 10:51:27 CST)
- Esther Brugger (Wed Nov 01 2006 - 09:51:17 CST)
problem generating a psf of a solvated system using VMD
- Leonardo Sepulveda Durán (Tue Nov 08 2005 - 18:54:18 CST)
problem generating NAD
- flavio seixas (Fri Dec 23 2011 - 17:42:12 CST)
- Magnus Andersson (Fri Dec 23 2011 - 13:37:19 CST)
Problem generating PSF file for decalanine...any help?
- Santanu Chatterjee (Wed Sep 19 2007 - 18:24:38 CDT)
- Santanu Chatterjee (Wed Sep 19 2007 - 18:20:58 CDT)
Problem generating psf file in psfgen
- John Stone (Sat Dec 19 2009 - 01:52:07 CST)
- Ranyere Deyler (Wed Dec 16 2009 - 23:24:58 CST)
problem in autoionize
- bora erdemli (Fri Oct 01 2004 - 00:23:58 CDT)
- John Stone (Thu Sep 30 2004 - 14:16:14 CDT)
- bora erdemli (Thu Sep 30 2004 - 08:00:18 CDT)
- Anna Modzelewska (Thu Sep 30 2004 - 04:18:38 CDT)
- bora erdemli (Thu Sep 30 2004 - 01:38:51 CDT)
- John Stone (Wed Sep 29 2004 - 09:37:19 CDT)
- bora erdemli (Wed Sep 29 2004 - 08:43:05 CDT)
problem in extracting frame number
- Ajasja LjubetiÄ (Thu Jan 13 2011 - 15:46:48 CST)
- dhacademic (Thu Jan 13 2011 - 13:08:17 CST)
- dhacademic (Thu Jan 13 2011 - 09:45:16 CST)
- Eduard Schreiner (Thu Jan 13 2011 - 10:33:34 CST)
- John Stone (Thu Jan 13 2011 - 09:53:20 CST)
Problem in finding the HBonds
- Axel Kohlmeyer (Wed Apr 15 2009 - 07:56:52 CDT)
- Irene Newhouse (Wed Apr 15 2009 - 03:56:52 CDT)
- Manishi Pandey (Wed Apr 15 2009 - 02:50:29 CDT)
Problem in IMD with Compiled VMD
- Amr Rizq (Wed Mar 04 2009 - 09:20:20 CST)
- Amr Rizq (Wed Mar 04 2009 - 08:55:33 CST)
- Axel Kohlmeyer (Wed Mar 04 2009 - 08:55:24 CST)
- John Stone (Wed Mar 04 2009 - 08:34:37 CST)
- Amr Rizq (Wed Mar 04 2009 - 06:00:58 CST)
problem in launching vmd
- John Stone (Tue Jun 21 2011 - 08:57:50 CDT)
- kaustubh joshi (Tue Jun 21 2011 - 07:21:17 CDT)
Problem in linking (with TCL included in webpdbplugin.c)
- John Stone (Wed Dec 07 2005 - 10:47:51 CST)
- Do_Ba Duc (Tue Dec 06 2005 - 20:55:11 CST)
Problem in loading data
- Peter Freddolino (Sun May 24 2009 - 17:53:19 CDT)
- Axel Kohlmeyer (Sun May 24 2009 - 11:08:09 CDT)
- Jae Hyun Park (Sun May 24 2009 - 10:38:24 CDT)
problem in loading dcd file?
- Ioana Cozmuta (Fri May 30 2003 - 19:15:14 CDT)
- John Stone (Fri May 30 2003 - 16:02:50 CDT)
- Ioana Cozmuta (Fri May 30 2003 - 15:56:08 CDT)
- John Stone (Fri May 30 2003 - 10:29:32 CDT)
- Ioana Cozmuta (Thu May 29 2003 - 19:53:40 CDT)
problem in minimization while running
- Peter Freddolino (Thu Jun 15 2006 - 16:06:09 CDT)
- Moumita Maiti (Thu Jun 15 2006 - 15:59:50 CDT)
problem in overlapping atoms
- Ajasja LjubetiÄ (Sun May 22 2011 - 05:52:14 CDT)
- Parul tew (Sun May 22 2011 - 05:02:18 CDT)
- Parul tew (Sun May 22 2011 - 05:01:31 CDT)
problem in reading .nc NETCDF FILE
- Genform GK (Fri Sep 25 2009 - 00:21:15 CDT)
- John Stone (Thu Sep 24 2009 - 08:18:59 CDT)
- Genform GK (Wed Sep 23 2009 - 23:02:10 CDT)
Problem in text mode
- Axel Kohlmeyer (Thu Oct 16 2008 - 09:53:50 CDT)
- Eric H. Lee (Thu Oct 16 2008 - 01:43:01 CDT)
- Schreiner Eduard (Thu Oct 16 2008 - 01:47:48 CDT)
- Schreiner Eduard (Thu Oct 16 2008 - 00:41:25 CDT)
- Wei Huang (Thu Oct 16 2008 - 00:58:55 CDT)
- Wei Huang (Thu Oct 16 2008 - 00:25:07 CDT)
problem in using "Automatic PSF Builder"
- John Stone (Mon Jan 09 2006 - 11:17:12 CST)
- John Stone (Wed Dec 28 2005 - 14:42:36 CST)
- Li Anbang (Tue Dec 27 2005 - 06:51:50 CST)
problem in visualizing gaussian log file
- John Stone (Thu Sep 14 2006 - 13:21:22 CDT)
- dimka (Thu Sep 14 2006 - 13:13:33 CDT)
- Francesca Mocci (Thu Sep 14 2006 - 09:26:43 CDT)
- Jan Saam (Thu Sep 14 2006 - 08:09:09 CDT)
- Francesca Mocci (Thu Sep 14 2006 - 05:41:51 CDT)
Problem installation on RedHat
- Axel Kohlmeyer (Tue Feb 21 2006 - 01:10:52 CST)
- Mgr. Lubos Vrbka (Tue Feb 21 2006 - 00:43:11 CST)
- Fan,Huajun (Mon Feb 20 2006 - 21:18:32 CST)
Problem installing on linux
- John Stone (Fri Jul 12 2002 - 14:24:12 CDT)
- Russell Poyner (Fri Jul 12 2002 - 12:43:03 CDT)
- John Stone (Fri Jul 12 2002 - 11:38:09 CDT)
- Russell Poyner (Thu Jul 11 2002 - 16:16:18 CDT)
Problem installing vmd in UBUNTU 10.10
- John Stone (Sat Jan 15 2011 - 13:15:09 CST)
- Nima Nouri (Sat Jan 15 2011 - 13:18:21 CST)
- Nima Nouri (Sat Jan 15 2011 - 12:55:17 CST)
problem loading dcd file
- John Stone (Sun Oct 01 2006 - 21:36:44 CDT)
- Peter Freddolino (Sat Sep 30 2006 - 09:15:20 CDT)
- Shenoy, Sukesh (Fri Sep 29 2006 - 11:43:03 CDT)
Problem loading pdb file on VMD
- Axel Kohlmeyer (Wed May 09 2007 - 19:21:40 CDT)
- John Stone (Wed May 09 2007 - 17:56:18 CDT)
- Axel Kohlmeyer (Wed May 09 2007 - 17:43:45 CDT)
- ren (Wed May 09 2007 - 04:46:42 CDT)
- Axel Kohlmeyer (Wed May 09 2007 - 07:38:54 CDT)
- Axel Kohlmeyer (Wed May 09 2007 - 07:37:56 CDT)
- Mario Valle (Wed May 09 2007 - 03:52:33 CDT)
- John Stone (Wed May 09 2007 - 02:48:42 CDT)
- ren (Wed May 09 2007 - 02:10:48 CDT)
problem loading trajectory in VMD under windows XP
- John Stone (Wed Jun 11 2008 - 01:37:58 CDT)
- Axel Kohlmeyer (Tue Jun 10 2008 - 20:21:24 CDT)
- Aaron.Oakley_at_csiro.au (Tue Jun 10 2008 - 18:41:24 CDT)
Problem Material Studio/VMD
- m.raviprasad_at_ndsu.edu (Wed Aug 11 2010 - 12:55:52 CDT)
- Vikas Varshney (Wed Aug 11 2010 - 12:54:07 CDT)
- Axel Kohlmeyer (Wed Aug 11 2010 - 04:26:56 CDT)
- Ajasja LjubetiÄ (Wed Aug 11 2010 - 03:48:44 CDT)
- candy deck (Wed Aug 11 2010 - 01:49:55 CDT)
problem merging two identical proteins
- juan jesus sanchez sanchez (Wed May 18 2011 - 12:32:09 CDT)
problem Nvidia and vmd
- Jérôme Hénin (Mon Dec 06 2004 - 15:49:35 CST)
- John Stone (Mon Dec 06 2004 - 11:14:26 CST)
- Sylvain EDALEINE (Mon Dec 06 2004 - 11:02:14 CST)
problem of exceeding max atom number
- Axel Kohlmeyer (Tue Sep 27 2011 - 13:41:45 CDT)
- John Stone (Tue Sep 27 2011 - 13:24:22 CDT)
- JhonY. I. (Tue Sep 27 2011 - 12:51:43 CDT)
Problem of installing VMD 1.8.3 on Fedora14
- Axel Kohlmeyer (Sun Jul 17 2011 - 16:52:34 CDT)
- Tatyana Sysoeva (Sun Jul 17 2011 - 15:42:28 CDT)
problem of installing vmd 1.8.7 on Mac osx 10.4.11
- John Stone (Wed Feb 17 2010 - 11:55:01 CST)
- Jane Bailey (Wed Feb 17 2010 - 11:14:55 CST)
- Benjamin Bouvier (Wed Feb 17 2010 - 10:50:33 CST)
- John Stone (Wed Feb 17 2010 - 09:47:58 CST)
- Jane Bailey (Wed Feb 17 2010 - 09:35:53 CST)
Problem of Movie Maker Plugin
- Axel Kohlmeyer (Sat Jun 28 2008 - 11:19:02 CDT)
- lei wang (Sat Jun 28 2008 - 05:41:29 CDT)
problem on making a movie
- Jun Cheng (Wed Mar 16 2011 - 18:16:44 CDT)
- John Stone (Tue Mar 15 2011 - 14:14:04 CDT)
- Jun Cheng (Tue Mar 15 2011 - 08:42:09 CDT)
- John Stone (Fri Mar 11 2011 - 12:37:14 CST)
- Jun Cheng (Fri Mar 11 2011 - 12:26:13 CST)
- John Stone (Fri Mar 11 2011 - 10:31:21 CST)
- Jun Cheng (Fri Mar 11 2011 - 09:36:49 CST)
- Goldsmith, Jacob (Fri Mar 11 2011 - 09:20:58 CST)
- Axel Kohlmeyer (Fri Mar 11 2011 - 05:58:33 CST)
- Jun Cheng (Fri Mar 11 2011 - 04:42:34 CST)
problem on rmsdtt
- masoud kazemi (Sun Apr 03 2011 - 08:52:22 CDT)
problem reading AMBER7 parm file
- John Stone (Wed Jul 17 2002 - 10:23:08 CDT)
- John Stone (Wed Jul 17 2002 - 09:55:15 CDT)
- Jeff Ames (Wed Jul 17 2002 - 01:51:49 CDT)
problem regarding stride
- Axel Kohlmeyer (Mon Aug 13 2007 - 11:06:48 CDT)
- aneesh cna (Mon Aug 13 2007 - 05:31:32 CDT)
- aneesh cna (Mon Aug 13 2007 - 00:58:09 CDT)
- Axel Kohlmeyer (Sat Aug 11 2007 - 12:51:55 CDT)
- gurpreet singh (Sat Aug 11 2007 - 01:44:25 CDT)
problem regarding the MC trajectory
- Ramya Narasimhan (Sun Dec 19 2010 - 23:40:19 CST)
- John Stone (Wed Dec 15 2010 - 16:25:24 CST)
- Ramya Narasimhan (Wed Dec 15 2010 - 00:41:46 CST)
problem regarding timeline
- aneesh cna (Mon Sep 10 2007 - 10:54:01 CDT)
Problem rendering NewCartoon
- John Stone (Fri Nov 17 2006 - 13:37:26 CST)
- John Stone (Fri Nov 17 2006 - 12:50:31 CST)
- nunolf_at_ci.uc.pt (Fri Nov 17 2006 - 12:43:03 CST)
- Sathyapriya R (Fri Nov 17 2006 - 12:03:52 CST)
problem rendering NewCartoon with tachyon
- MW Van der Kamp, School of Chemistry (Wed Jan 16 2008 - 03:09:04 CST)
- John Stone (Tue Jan 15 2008 - 12:44:31 CST)
- MW Van der Kamp, School of Chemistry (Tue Jan 15 2008 - 03:03:27 CST)
problem rendering traj file with tachyon
- John Stone (Thu Sep 15 2005 - 11:46:54 CDT)
- Chang, Christopher (Tue Sep 13 2005 - 16:19:22 CDT)
- Carlos Simmerling (Tue Sep 13 2005 - 10:47:03 CDT)
problem running pgn script file
- Axel Kohlmeyer (Tue Oct 03 2006 - 11:11:45 CDT)
- Peter Freddolino (Tue Oct 03 2006 - 11:07:52 CDT)
- Shenoy, Sukesh (Tue Oct 03 2006 - 10:37:04 CDT)
Problem starting VMD with Fedora Core3
- John Stone (Fri Mar 04 2005 - 09:30:05 CST)
- olivier Walker (Fri Mar 04 2005 - 09:10:15 CST)
Problem to find the number of frames of a trajectory
- John Stone (Tue Jul 22 2008 - 10:15:00 CDT)
- John Stone (Tue Jul 22 2008 - 00:50:30 CDT)
- David Poger (Mon Jul 21 2008 - 23:58:48 CDT)
- John Stone (Mon Jul 21 2008 - 23:50:56 CDT)
- David Poger (Mon Jul 21 2008 - 20:19:01 CDT)
problem to render .cms file
- John Stone (Fri Aug 05 2011 - 16:12:31 CDT)
- AB (Thu Aug 04 2011 - 02:11:34 CDT)
problem using bigdcd.tcl script does not run beyond the first frame no error reported
- Himanshu Khandelia (Mon May 07 2007 - 10:25:56 CDT)
- Axel Kohlmeyer (Mon May 07 2007 - 08:36:50 CDT)
- Himanshu Khandelia (Mon May 07 2007 - 04:42:10 CDT)
Problem using ied.py
- Jim Nettles (Fri Mar 18 2005 - 12:17:25 CST)
- John Stone (Fri Mar 18 2005 - 12:16:30 CST)
- John Stone (Fri Mar 18 2005 - 12:12:39 CST)
- John Stone (Fri Mar 04 2005 - 00:58:24 CST)
- Jim Nettles (Thu Mar 03 2005 - 16:45:44 CST)
- John Stone (Thu Mar 03 2005 - 15:22:48 CST)
- Stef (Tue Mar 01 2005 - 08:54:24 CST)
problem using NAMD trajectory in charmm 32-bit, 64-bit etc. (yes, I posted this on charmm lists too)
- Axel Kohlmeyer (Tue Apr 03 2007 - 09:20:25 CDT)
- namd vmd (Tue Apr 03 2007 - 07:49:45 CDT)
problem using pbc wrap
- Axel Kohlmeyer (Tue Apr 29 2008 - 06:49:20 CDT)
- politr_at_huji.ac.il (Tue Apr 29 2008 - 05:52:09 CDT)
Problem using pbc wrap.....
- Olaf Lenz (Sat Jun 27 2009 - 10:44:53 CDT)
- Alberto Sergio Garay (Fri Jun 26 2009 - 15:01:35 CDT)
- Olaf Lenz (Fri Jun 26 2009 - 10:06:06 CDT)
- Alberto Sergio Garay (Fri Jun 26 2009 - 07:13:44 CDT)
problem using pbc wrap: broken molecule
- Axel Kohlmeyer (Fri Aug 01 2008 - 16:29:59 CDT)
- Peter Freddolino (Fri Aug 01 2008 - 15:24:51 CDT)
- Jianhui Tian (Fri Aug 01 2008 - 10:52:45 CDT)
- Axel Kohlmeyer (Fri Aug 01 2008 - 10:00:18 CDT)
- Peter Freddolino (Fri Aug 01 2008 - 10:14:47 CDT)
- Jianhui Tian (Thu Jul 31 2008 - 20:32:47 CDT)
Problem using psfgen and carbohydrate charmm parameters.
- John Stone (Mon Oct 12 2009 - 15:50:56 CDT)
- Alexandre Suman de Araujo (Thu Oct 08 2009 - 16:19:26 CDT)
Problem using rotate command in a script ...(2)
- John Stone (Fri Jun 10 2011 - 09:40:45 CDT)
- Alberto Sergio Garay (Fri Jun 10 2011 - 07:10:05 CDT)
- Alberto Sergio Garay (Thu Jun 09 2011 - 13:11:01 CDT)
Problem using rotate command in a script ....
- John Stone (Thu Jun 09 2011 - 10:53:17 CDT)
- Alberto Sergio Garay (Thu Jun 09 2011 - 09:36:33 CDT)
Problem using rotate in a script ....
- Alberto Sergio Garay (Wed Jun 08 2011 - 10:33:49 CDT)
problem using saltbr plugin in text mode
- Axel Kohlmeyer (Wed Sep 27 2006 - 14:00:28 CDT)
- tnels_at_sfu.ca (Wed Sep 27 2006 - 13:33:43 CDT)
problem viewing cube files
- John Stone (Fri Oct 06 2006 - 14:54:06 CDT)
- Axel Kohlmeyer (Thu Oct 05 2006 - 10:51:17 CDT)
- Dr. Seth Olsen (Thu Oct 05 2006 - 03:32:34 CDT)
- Axel Kohlmeyer (Wed Oct 04 2006 - 08:26:45 CDT)
- Dr. Seth Olsen (Tue Oct 03 2006 - 21:10:33 CDT)
Problem vmd 1.9 plus Cave
- Christian Wohlschlager (Fri Oct 28 2011 - 04:23:30 CDT)
- Christian Wohlschlager (Thu Oct 27 2011 - 01:12:09 CDT)
- John Stone (Thu Oct 27 2011 - 01:29:42 CDT)
Problem vmd1.8.5 & vmd1.8.6 on a mac-pro running ubuntu
- ZT Yew (Tue Oct 16 2007 - 10:55:34 CDT)
- John Stone (Tue Oct 16 2007 - 10:19:21 CDT)
- ZT Yew (Tue Oct 16 2007 - 10:13:22 CDT)
problem when drawing a cylinder
- Olaf Lenz (Fri Jun 08 2007 - 04:01:40 CDT)
- Zhimin Xiong (Fri Jun 08 2007 - 03:27:28 CDT)
Problem when labeling atoms on machine with intel X4500HD integreted graphic card
- John Stone (Thu Feb 12 2009 - 15:46:21 CST)
- Shi, Chuanyin (Thu Feb 12 2009 - 15:25:45 CST)
Problem when using VMD Python Library
- John Stone (Wed Dec 30 2009 - 12:46:36 CST)
- Cun Zhang (Sun Dec 27 2009 - 08:31:04 CST)
- Cun Zhang (Fri Dec 25 2009 - 06:03:46 CST)
problem while integrating bigdcd into a namespace
- John Stone (Thu Mar 05 2009 - 22:36:23 CST)
- Thomas Evangelidis (Fri Feb 27 2009 - 16:19:03 CST)
problem while running VMD
- John Stone (Thu Apr 24 2008 - 09:20:17 CDT)
- Regina Politi (Thu Apr 24 2008 - 03:30:19 CDT)
- politr_at_huji.ac.il (Thu Apr 24 2008 - 03:31:22 CDT)
problem with "animate delete all"
- Wei Chen (Mon May 10 2010 - 17:37:31 CDT)
- John Stone (Mon May 10 2010 - 16:20:55 CDT)
- Wei Chen (Wed May 05 2010 - 13:57:16 CDT)
- Ajasja LjubetiÄ (Wed May 05 2010 - 02:44:02 CDT)
- Wei Chen (Tue May 04 2010 - 17:07:54 CDT)
Problem with "bigdcd"
- Leyla Celik (Thu Apr 28 2005 - 12:12:36 CDT)
- Brian Bennion (Thu Apr 28 2005 - 12:33:59 CDT)
- John Stone (Thu Apr 28 2005 - 09:58:49 CDT)
- Leyla Celik (Thu Apr 28 2005 - 09:53:18 CDT)
problem with "measure fit "
- John Stone (Mon Feb 09 2009 - 16:41:32 CST)
- Leontyev Igor (Tue Feb 03 2009 - 15:51:02 CST)
problem with "within" command of VMD
- Axel Kohlmeyer (Thu Apr 24 2008 - 08:43:19 CDT)
- politr_at_huji.ac.il (Thu Apr 24 2008 - 08:22:23 CDT)
Problem with 'unwrap'
- Sandra Rennebaum (Mon Aug 23 2010 - 03:44:34 CDT)
problem with -args in text mode
- Axel Kohlmeyer (Mon Sep 18 2006 - 14:19:28 CDT)
- Axel Kohlmeyer (Fri Sep 15 2006 - 23:34:41 CDT)
- tnels_at_sfu.ca (Fri Sep 15 2006 - 19:38:07 CDT)
problem with 1.8.7 installation
- Axel Kohlmeyer (Tue Aug 25 2009 - 06:43:51 CDT)
- Barbault Florent (Tue Aug 25 2009 - 04:50:41 CDT)
Problem with a tcl script: probable memory overload
- Leonardo Sepulveda Durán (Mon Jan 08 2007 - 10:22:25 CST)
- Marcos Sotomayor (Mon Jan 08 2007 - 09:53:34 CST)
- Leonardo Sepulveda Durán (Mon Jan 08 2007 - 09:05:01 CST)
problem with amber 6 restart files (parm and rst)
- Johannes von Langen (Tue Jun 11 2002 - 03:57:29 CDT)
- Stéphane Teletchéa (Tue Jun 04 2002 - 06:39:20 CDT)
- Raik Grunberg (Tue Jun 04 2002 - 04:08:40 CDT)
problem with APBS pqr generation...
- John Stone (Tue Jan 24 2006 - 11:21:16 CST)
- Ravinder Abrol (Mon Jan 23 2006 - 20:26:17 CST)
Problem with autoionize ?
- Axel Kohlmeyer (Thu Apr 02 2009 - 11:46:33 CDT)
- Kalavera_at_gmx.net (Thu Apr 02 2009 - 09:58:53 CDT)
- Axel Kohlmeyer (Thu Apr 02 2009 - 09:25:33 CDT)
- Kalavera_at_gmx.net (Thu Apr 02 2009 - 08:50:49 CDT)
problem with autopsf
- Peter Freddolino (Thu Feb 15 2007 - 08:20:20 CST)
- L. Michel Espinoza-Fonseca (Thu Feb 15 2007 - 08:16:06 CST)
- Peter Freddolino (Thu Feb 15 2007 - 08:11:49 CST)
- L. Michel Espinoza-Fonseca (Thu Feb 15 2007 - 07:44:18 CST)
Problem with bigdcd
- Himanshu Khandelia (Fri Oct 19 2007 - 12:25:56 CDT)
- Vishal Kopardé (Fri Oct 19 2007 - 11:16:25 CDT)
- John Stone (Fri Oct 19 2007 - 11:01:24 CDT)
- Vishal Kopardé (Fri Oct 19 2007 - 09:03:24 CDT)
problem with bigdcd rmsd calculaton output
- Axel Kohlmeyer (Mon May 30 2011 - 23:16:30 CDT)
- Bian Li (Mon May 30 2011 - 22:22:48 CDT)
Problem with biotin autopsf
- Peter Freddolino (Fri Jan 20 2006 - 09:14:56 CST)
- Lin (Thu Jan 19 2006 - 22:17:02 CST)
problem with bitmap rendering
- John Stone (Wed Jul 03 2002 - 09:24:14 CDT)
- sjcav_at_aros.net (Wed Jul 03 2002 - 05:35:56 CDT)
Problem with bondsrecalc
- John Stone (Mon May 28 2007 - 15:38:50 CDT)
- Axel Kohlmeyer (Mon May 28 2007 - 13:17:22 CDT)
- Philippe Roche (Mon May 28 2007 - 11:29:47 CDT)
- Philippe Roche (Mon May 28 2007 - 11:33:07 CDT)
Problem with cartoon and secondary structure
- Francisco José Taberner Sanchis (Tue May 03 2011 - 05:13:18 CDT)
problem with catdcd
- JC Gumbart (Sun Feb 12 2012 - 08:34:56 CST)
- Joshua Adelman (Sun Feb 12 2012 - 08:38:22 CST)
- Albert (Sun Feb 12 2012 - 08:24:29 CST)
- JC Gumbart (Sun Feb 12 2012 - 08:21:18 CST)
- Albert (Sun Feb 12 2012 - 02:23:40 CST)
Problem with cellBasisVector 1, 2 and 3
- Peter Freddolino (Wed Aug 23 2006 - 09:32:39 CDT)
- Pavan Ghatty (Wed Aug 23 2006 - 08:55:04 CDT)
problem with coloring surface by electrostatic potential
- John Stone (Wed Sep 21 2005 - 10:36:03 CDT)
- Eugen Leitl (Wed Sep 21 2005 - 03:50:47 CDT)
- Dallas B. Warren (Tue Sep 20 2005 - 20:54:12 CDT)
- Dan Strahs (Tue Sep 20 2005 - 18:04:15 CDT)
- John Stone (Tue Sep 20 2005 - 16:56:43 CDT)
- Dan Strahs (Tue Sep 20 2005 - 16:40:09 CDT)
- John Stone (Tue Sep 20 2005 - 14:34:02 CDT)
- Axel Kohlmeyer (Tue Sep 20 2005 - 14:17:54 CDT)
- John Stone (Tue Sep 20 2005 - 11:29:30 CDT)
- Dan Strahs (Tue Sep 20 2005 - 11:13:58 CDT)
problem with colouring the surface with electroststic potential
- John Stone (Wed Nov 14 2007 - 11:19:27 CST)
- John Stone (Tue Nov 13 2007 - 10:09:17 CST)
- Axel Kohlmeyer (Tue Nov 13 2007 - 02:15:54 CST)
- aneesh cna (Mon Nov 12 2007 - 23:15:25 CST)
problem with correct visualization of residues
- L. Michel Espinoza-Fonseca (Tue Jul 15 2008 - 13:53:54 CDT)
- L. Michel Espinoza-Fonseca (Tue Jul 15 2008 - 13:44:13 CDT)
- Axel Kohlmeyer (Tue Jul 15 2008 - 13:39:06 CDT)
- Axel Kohlmeyer (Tue Jul 15 2008 - 13:21:57 CDT)
- John Stone (Tue Jul 15 2008 - 13:04:18 CDT)
- L. Michel Espinoza-Fonseca (Tue Jul 15 2008 - 13:08:55 CDT)
- L. Michel Espinoza-Fonseca (Tue Jul 15 2008 - 12:50:58 CDT)
Problem with creating psf file from structure made by inorganic builder
- Anneta Tzampazi (Fri Oct 03 2008 - 04:43:19 CDT)
Problem with creation of child fragment in Molefacture
- Peter Freddolino (Wed Apr 21 2010 - 09:51:35 CDT)
- Yongmei Pan (Wed Apr 21 2010 - 09:15:57 CDT)
- Alexandre Suman de Araujo (Wed Apr 21 2010 - 08:06:07 CDT)
- Peter Freddolino (Wed Apr 21 2010 - 07:56:35 CDT)
- Alexandre Suman de Araujo (Tue Apr 20 2010 - 20:04:05 CDT)
- Peter Freddolino (Tue Apr 20 2010 - 18:02:23 CDT)
- Alexandre Suman de Araujo (Tue Apr 20 2010 - 14:04:31 CDT)
Problem with Dell Workstation
- John Stone (Tue Nov 15 2005 - 17:51:36 CST)
- Kamil Tamiola (Tue Nov 15 2005 - 13:42:00 CST)
problem with density map obtained by volmap
- Axel Kohlmeyer (Sun Sep 20 2009 - 13:44:03 CDT)
- Ana Célia Vila Verde (Sun Sep 20 2009 - 08:01:12 CDT)
Problem with differentiating atoms from different frames for dcd file
- Lin (Fri Mar 24 2006 - 05:29:55 CST)
- John Stone (Wed Mar 22 2006 - 10:23:41 CST)
- Lin (Wed Mar 22 2006 - 10:16:44 CST)
problem with dispdev
- Axel Kohlmeyer (Wed May 27 2009 - 16:20:37 CDT)
- KIRTANA S (Wed May 27 2009 - 15:59:41 CDT)
- John Stone (Wed May 27 2009 - 16:02:38 CDT)
Problem with display on Intel graphics card
- Tim Travers (Wed May 26 2010 - 16:25:03 CDT)
- Tim Travers (Wed May 26 2010 - 16:27:01 CDT)
- John Stone (Wed May 26 2010 - 09:46:45 CDT)
- Tim Travers (Tue May 25 2010 - 17:29:09 CDT)
Problem with DNA bonds
- John Stone (Mon Aug 15 2005 - 14:05:54 CDT)
- Bob Johnson (Mon Aug 15 2005 - 13:54:28 CDT)
problem with Dowser
- Irene Newhouse (Wed Mar 11 2009 - 00:59:08 CDT)
- Leonardo Trabuco (Tue Mar 10 2009 - 22:41:52 CDT)
- Irene Newhouse (Sun Mar 08 2009 - 00:55:03 CST)
- Axel Kohlmeyer (Sat Mar 07 2009 - 20:18:42 CST)
- Leonardo Trabuco (Sat Mar 07 2009 - 20:07:47 CST)
- Irene Newhouse (Sat Mar 07 2009 - 19:50:35 CST)
problem with DPPC topology
- Alexis Salas (Tue Mar 08 2005 - 14:29:43 CST)
Problem with exit button
- John Stone (Tue Nov 10 2009 - 18:41:04 CST)
- Nuno Sousa Cerqueira (Tue Nov 10 2009 - 18:14:12 CST)
- John Stone (Tue Nov 10 2009 - 16:33:36 CST)
- Nuno Sousa Cerqueira (Tue Nov 10 2009 - 04:55:24 CST)
Problem with for loop.
- Sara baretller (Fri Jul 08 2011 - 15:09:16 CDT)
- Sara baretller (Fri Jul 08 2011 - 10:19:50 CDT)
- Sara baretller (Fri Jul 08 2011 - 09:52:16 CDT)
- Axel Kohlmeyer (Thu Jul 07 2011 - 16:59:46 CDT)
- Sara baretller (Thu Jul 07 2011 - 16:13:03 CDT)
- Mark Cunningham (Thu Jul 07 2011 - 09:22:27 CDT)
- Sara baretller (Thu Jul 07 2011 - 08:08:42 CDT)
- Mark Cunningham (Wed Jul 06 2011 - 12:34:36 CDT)
- Axel Kohlmeyer (Wed Jul 06 2011 - 10:57:44 CDT)
- Axel Kohlmeyer (Wed Jul 06 2011 - 10:26:10 CDT)
- Sara baretller (Wed Jul 06 2011 - 10:04:01 CDT)
- Sara baretller (Wed Jul 06 2011 - 09:38:20 CDT)
problem with generating movie from pdb files
- John Stone (Mon Jan 09 2006 - 17:08:46 CST)
- Sergey Krishtal (Thu Jan 05 2006 - 04:19:38 CST)
problem with generating PSF file for guanine based molecule
- Axel Kohlmeyer (Sun Feb 07 2010 - 14:05:19 CST)
- Parisa Akhski (Sun Feb 07 2010 - 11:51:03 CST)
Problem with generating psf using CGENFF
- Bennion, Brian (Mon Apr 30 2012 - 13:26:00 CDT)
- amin_at_imtech.res.in (Fri Apr 27 2012 - 22:46:21 CDT)
- amin_at_imtech.res.in (Fri Apr 27 2012 - 22:35:16 CDT)
- Bennion, Brian (Fri Apr 27 2012 - 11:57:18 CDT)
- Ahmet Bakan (Fri Apr 27 2012 - 11:27:08 CDT)
- Bennion, Brian (Fri Apr 27 2012 - 09:23:34 CDT)
- amin_at_imtech.res.in (Thu Apr 26 2012 - 23:34:55 CDT)
- Bennion, Brian (Thu Apr 26 2012 - 13:27:45 CDT)
- amin_at_imtech.res.in (Thu Apr 26 2012 - 13:00:01 CDT)
- Axel Kohlmeyer (Thu Apr 26 2012 - 12:41:38 CDT)
- amin_at_imtech.res.in (Thu Apr 26 2012 - 12:26:50 CDT)
- Chris Harrison (Thu Apr 26 2012 - 11:55:08 CDT)
- amin_at_imtech.res.in (Thu Apr 26 2012 - 11:37:56 CDT)
- Chris Harrison (Thu Apr 26 2012 - 06:23:08 CDT)
- amin_at_imtech.res.in (Thu Apr 26 2012 - 04:42:40 CDT)
problem with getting started.
- Andrew Dalke (Sun Dec 21 1997 - 11:47:00 CST)
- Rainer Fink (Fri Dec 19 1997 - 12:32:29 CST)
problem with gopython
- John Stone (Tue Mar 11 2008 - 10:06:47 CDT)
- Carolyn Phillips (Mon Mar 10 2008 - 22:32:05 CDT)
- Peter Freddolino (Fri Mar 17 2006 - 11:42:12 CST)
- John Stone (Fri Mar 17 2006 - 11:17:33 CST)
- Ludovic Pétain (Fri Mar 17 2006 - 07:19:11 CST)
Problem with Hg, H
- Eduard Schreiner (Wed May 10 2006 - 10:41:34 CDT)
- Christian Simon (Wed May 10 2006 - 07:40:49 CDT)
- Younes Ansari (Wed May 10 2006 - 04:09:57 CDT)
- Axel Kohlmeyer (Mon Feb 20 2006 - 19:13:49 CST)
- John Stone (Mon Feb 20 2006 - 18:41:22 CST)
- Younes Ansari (Sun Feb 19 2006 - 12:38:20 CST)
Problem with hydration script
- Bryan Roessler (Thu Apr 19 2012 - 15:17:35 CDT)
- Joaquim Rui de Castro Rodrigues (Thu Apr 19 2012 - 14:23:33 CDT)
- Bennion, Brian (Thu Apr 19 2012 - 14:32:53 CDT)
- Bryan Roessler (Thu Apr 19 2012 - 13:17:39 CDT)
problem with ied and vmd,ImportError: liblapack.so.3: cannot open shared object file: No such file or directory
- Axel Kohlmeyer (Thu Mar 25 2010 - 10:49:09 CDT)
- Knut Jørgen Bjuland (Thu Mar 25 2010 - 09:49:05 CDT)
- Axel Kohlmeyer (Thu Mar 25 2010 - 06:01:48 CDT)
- Knut Jørgen Bjuland (Thu Mar 25 2010 - 04:26:35 CDT)
problem with IED on VMD 1.8.3
- Vlad Cojocaru (Wed Mar 02 2005 - 08:51:59 CST)
problem with IED: 'numpy.ndarray' object has no attribute 'typecode'
- J. Rui Rodrigues (Wed Apr 07 2010 - 14:01:37 CDT)
Problem with instalation process
- John Stone (Fri Jun 07 2002 - 14:30:28 CDT)
- John Stone (Fri Jun 07 2002 - 14:08:57 CDT)
- John Stone (Fri Jun 07 2002 - 11:42:32 CDT)
- jrui_at_ci.uc.pt (Thu Jun 06 2002 - 19:03:09 CDT)
Problem with Install
- Joaquim Rui Rodrigues (Fri Jan 16 2009 - 06:59:15 CST)
- bo baker (Fri Jan 16 2009 - 05:12:34 CST)
problem with installation
- John Stone (Wed Jun 07 2006 - 11:32:52 CDT)
- John Stone (Wed Jun 07 2006 - 11:02:06 CDT)
- Yuan Zhang (Wed Jun 07 2006 - 10:27:51 CDT)
problem with installing VMD on a LINUX cluster
- John Stone (Wed May 30 2007 - 16:34:37 CDT)
- Yinglong Miao (Mon May 28 2007 - 22:54:54 CDT)
- John Stone (Mon May 28 2007 - 15:43:50 CDT)
- Axel Kohlmeyer (Fri May 25 2007 - 17:00:20 CDT)
- Yinglong Miao (Fri May 25 2007 - 16:59:11 CDT)
problem with labels
- John Stone (Tue Apr 29 2003 - 17:53:40 CDT)
- Lubos Vrbka (Tue Apr 29 2003 - 16:09:38 CDT)
- John Stone (Tue Apr 29 2003 - 13:36:00 CDT)
- John Stone (Tue Apr 29 2003 - 13:07:30 CDT)
- Lubos Vrbka (Tue Apr 29 2003 - 08:36:05 CDT)
problem with loading trajectories in timline plugin
- Rogan Carr (Sun Nov 25 2007 - 16:01:54 CST)
- John Stone (Thu Nov 22 2007 - 00:35:09 CST)
- aneesh cna (Thu Nov 22 2007 - 00:24:00 CST)
Problem with loop. it s not going to the next peptide
- Axel Kohlmeyer (Fri Jul 01 2011 - 17:06:25 CDT)
- Sara baretller (Fri Jul 01 2011 - 16:35:28 CDT)
- Sara baretller (Fri Jul 01 2011 - 13:13:14 CDT)
problem with measure command
- John Stone (Fri Jun 23 2006 - 11:09:00 CDT)
- Ana Celia Araujo Vila Verde (Fri Jun 23 2006 - 11:02:14 CDT)
- John Stone (Fri Jun 23 2006 - 10:34:03 CDT)
- Ana Celia Araujo Vila Verde (Fri Jun 23 2006 - 10:22:49 CDT)
Problem with measuring dihedrals
- Jernej Zidar (Tue Sep 20 2011 - 05:28:57 CDT)
- Axel Kohlmeyer (Tue Sep 20 2011 - 04:55:10 CDT)
- Ajasja LjubetiÄ (Tue Sep 20 2011 - 04:54:54 CDT)
- Jernej Zidar (Tue Sep 20 2011 - 03:47:24 CDT)
problem with memory
- John Stone (Tue Sep 07 2004 - 10:05:00 CDT)
- S.G.Falkovich (Tue Sep 07 2004 - 04:58:35 CDT)
Problem with Movie Maker
- John Stone (Mon Oct 31 2011 - 09:54:03 CDT)
- Carolyn Phillips (Sat Oct 29 2011 - 11:38:10 CDT)
- Carolyn Phillips (Fri Oct 28 2011 - 17:41:12 CDT)
Problem with moving protein for all frames
- Jeffrey Potoff (Tue May 01 2012 - 19:53:12 CDT)
- Axel Kohlmeyer (Tue May 01 2012 - 17:04:37 CDT)
- gökçe ayþe güven (Tue May 01 2012 - 16:14:24 CDT)
problem with MSMS and VMD
- james tomomi macdonald (Mon Jul 05 2004 - 16:02:12 CDT)
- John Stone (Mon Jul 05 2004 - 14:18:33 CDT)
- james tomomi macdonald (Mon Jul 05 2004 - 11:29:29 CDT)
problem with namdstats.tcl
- sudipta sinha (Sun Jun 15 2008 - 01:51:11 CDT)
Problem with namdstats.tcl in TkCon
- luca.dallaglio2_at_studio.unibo.it (Fri Jul 13 2007 - 03:12:03 CDT)
problem with near clip
- John Stone (Fri Dec 01 2006 - 10:49:26 CST)
- hkhandel_at_memphys.sdu.dk (Fri Dec 01 2006 - 09:26:29 CST)
Problem with New cartoon representation
- Axel Kohlmeyer (Mon Mar 01 2010 - 03:33:05 CST)
- Carla Jamous (Mon Mar 01 2010 - 02:37:33 CST)
problem with new plugin installation.
- John Stone (Sat Jan 28 2012 - 11:25:14 CST)
- Axel Kohlmeyer (Sat Jan 28 2012 - 10:33:50 CST)
- Albert (Sat Jan 28 2012 - 08:08:16 CST)
- Albert (Sat Jan 28 2012 - 01:18:14 CST)
Problem With No Atoms In Selection
- John Stone (Tue Nov 16 2010 - 15:33:50 CST)
- David Huggins (Tue Nov 16 2010 - 14:35:20 CST)
Problem with orient.tcl
- Salvador H-V (Thu Sep 02 2010 - 12:59:38 CDT)
problem with pbc
- Axel Kohlmeyer (Thu Mar 27 2008 - 07:26:05 CDT)
- Olaf Lenz (Thu Mar 27 2008 - 06:33:42 CDT)
- Axel Kohlmeyer (Thu Mar 27 2008 - 06:06:17 CDT)
- Olaf Lenz (Thu Mar 27 2008 - 02:30:00 CDT)
- Matt Watkins (Wed Mar 26 2008 - 17:07:58 CDT)
- Axel Kohlmeyer (Wed Mar 26 2008 - 16:38:07 CDT)
- Matt Watkins (Wed Mar 26 2008 - 16:20:55 CDT)
Problem with periodic condition
- Axel Kohlmeyer (Mon Apr 30 2007 - 15:47:12 CDT)
- Jianhui Tian (Mon Apr 30 2007 - 15:57:30 CDT)
- Axel Kohlmeyer (Sat Apr 28 2007 - 16:15:06 CDT)
- Olaf Lenz (Sat Apr 28 2007 - 17:14:20 CDT)
- Charles Cleveland (Sat Apr 28 2007 - 16:02:55 CDT)
- Olaf Lenz (Sat Apr 28 2007 - 13:27:51 CDT)
- Axel Kohlmeyer (Fri Apr 27 2007 - 14:42:33 CDT)
- Jianhui Tian (Fri Apr 27 2007 - 13:33:26 CDT)
problem with protein RMSD calculation due to incomplete wrapping of both peptide chains
- Maria Bagonis (Mon Nov 05 2007 - 18:23:08 CST)
- John Stone (Thu Nov 01 2007 - 17:39:14 CDT)
- Maria Bagonis (Thu Nov 01 2007 - 16:11:04 CDT)
problem with psf file generation
- Rudra Banerjee (Thu Sep 18 2008 - 03:29:07 CDT)
- Rudra Banerjee (Thu Sep 18 2008 - 01:12:44 CDT)
Problem with psfgen
- Florian Mrugalla (Tue Aug 23 2011 - 10:14:24 CDT)
- Axel Kohlmeyer (Tue Aug 23 2011 - 09:33:39 CDT)
- Florian Mrugalla (Tue Aug 23 2011 - 07:41:02 CDT)
- Q=C5=CC=C1=CC=CF=D7_=E9=CC=D8=D1?= (Sat Oct 03 2009 - 05:35:24 CDT)
Problem With Psfgen again
- Axel Kohlmeyer (Fri Jul 17 2009 - 14:37:13 CDT)
- avl211_at_lehigh.edu (Fri Jul 17 2009 - 13:53:49 CDT)
Problem with Reading Binary ccp4 File Generated by CHARMM
- rossi_at_york.cuny.edu (Thu Apr 05 2007 - 18:56:08 CDT)
- Leonardo Trabuco (Thu Apr 05 2007 - 14:55:07 CDT)
- John Stone (Thu Apr 05 2007 - 12:22:23 CDT)
- rossi_at_york.cuny.edu (Thu Apr 05 2007 - 11:32:02 CDT)
problem with RMSD script
- Justin Gullingsrud (Sun Aug 19 2001 - 18:48:02 CDT)
- John Stone (Fri Aug 17 2001 - 14:00:10 CDT)
- Elizabeth K. White (Wed Aug 15 2001 - 15:03:11 CDT)
problem with rmsd-fullthrottle
- JC Gumbart (Sat Jul 28 2007 - 15:36:02 CDT)
- Irene Newhouse (Sat Jul 28 2007 - 15:02:54 CDT)
- Irene Newhouse (Fri Jul 27 2007 - 15:16:54 CDT)
problem with saving changed coordinates in a new state
- Eduard Schreiner (Thu Nov 29 2007 - 02:24:56 CST)
- TaoJin (Wed Nov 28 2007 - 23:14:11 CST)
Problem with saving coordinate
- bo baker (Sun Sep 02 2007 - 20:18:13 CDT)
- John Stone (Sat Sep 01 2007 - 21:04:16 CDT)
- bo baker (Sat Sep 01 2007 - 18:49:57 CDT)
- bo baker (Fri Aug 31 2007 - 01:55:26 CDT)
- John Stone (Fri Aug 31 2007 - 02:08:30 CDT)
- Axel Kohlmeyer (Fri Aug 31 2007 - 00:17:25 CDT)
- bo baker (Thu Aug 30 2007 - 22:44:57 CDT)
problem with script to get RMSD
- Ana Celia Araujo Vila Verde (Fri Feb 17 2006 - 14:10:10 CST)
- Ana Celia Araujo Vila Verde (Fri Feb 17 2006 - 08:41:20 CST)
- Nuno R. L. Ferreira (Fri Feb 17 2006 - 03:50:45 CST)
- Ana Celia Araujo Vila Verde (Thu Feb 16 2006 - 15:49:23 CST)
- John Stone (Thu Feb 16 2006 - 13:41:21 CST)
- Ana Celia Araujo Vila Verde (Thu Feb 16 2006 - 13:31:28 CST)
problem with script to get RMSD-solved
- Nuno R. L. Ferreira (Tue Feb 21 2006 - 11:41:30 CST)
- Ana Celia Araujo Vila Verde (Tue Feb 21 2006 - 10:53:16 CST)
problem with sidechian representation
- jrui_at_ci.uc.pt (Mon Jan 21 2008 - 04:28:00 CST)
- gurpreet singh (Mon Jan 21 2008 - 00:02:37 CST)
Problem with Starting vmd after Debian System Upgrade
- Angelo R. Rossi (Wed Jun 08 2011 - 07:27:05 CDT)
- Axel Kohlmeyer (Tue Jun 07 2011 - 12:19:42 CDT)
- Angelo Rossi (Tue Jun 07 2011 - 11:26:06 CDT)
Problem with stride
- Troy Wymore (Mon Aug 05 2002 - 13:01:58 CDT)
- John Stone (Mon Aug 05 2002 - 12:30:56 CDT)
- Troy Wymore (Mon Aug 05 2002 - 11:54:21 CDT)
Problem with stride, surf and tachyon in Windows2000
- John Stone (Fri Mar 28 2003 - 15:37:49 CST)
- John Stone (Wed Mar 26 2003 - 13:42:54 CST)
- J. Rui Rodrigues (Wed Mar 26 2003 - 11:47:03 CST)
problem with superimposing two proteins
- Dmitry Lupyan (Fri Jan 11 2008 - 15:26:38 CST)
- Elijah Roberts (Thu Jan 10 2008 - 17:09:37 CST)
- aneesh cna (Thu Jan 10 2008 - 05:33:21 CST)
problem with tcl script in text mode
- Jerome Henin (Wed Sep 20 2006 - 14:43:29 CDT)
- Nuno Ricardo Loureiro Ferreira (Wed Sep 20 2006 - 13:28:55 CDT)
- tnels_at_sfu.ca (Wed Sep 20 2006 - 12:47:01 CDT)
- tnels_at_sfu.ca (Wed Sep 20 2006 - 12:14:08 CDT)
Problem with the Graphics Command
- Luis Rosales (Mon Mar 28 2005 - 21:23:07 CST)
- Nitin Bhardwaj (Mon Mar 28 2005 - 18:56:16 CST)
Problem with the move command to rotate a molecule
- James C. Patterson (Wed Dec 08 2004 - 16:15:43 CST)
- Nitin Bhardwaj (Wed Dec 08 2004 - 16:06:50 CST)
problem with the new cartoon representation mode
- OZGE ENGIN (Sat Dec 08 2007 - 16:53:51 CST)
- Axel Kohlmeyer (Sat Dec 08 2007 - 16:08:22 CST)
- OZGE ENGIN (Sat Dec 08 2007 - 15:36:37 CST)
- Axel Kohlmeyer (Sat Dec 08 2007 - 14:37:00 CST)
- OZGE ENGIN (Sat Dec 08 2007 - 13:42:12 CST)
Problem with the script mono2poly.tcl
- John Stone (Sun Mar 15 2009 - 14:22:19 CDT)
- Fabio Trovato (Sat Mar 14 2009 - 04:56:17 CDT)
- John Stone (Fri Mar 13 2009 - 12:36:37 CDT)
- Fabio Trovato (Fri Mar 13 2009 - 11:46:44 CDT)
problem with time line plugin in VMD
- John Stone (Sun Jan 20 2008 - 22:55:40 CST)
- ABEL Stephane 175950 (Fri Jan 18 2008 - 03:36:30 CST)
problem with timeline plugin
- John Stone (Fri Jan 25 2008 - 00:17:48 CST)
- aneesh cna (Fri Jan 25 2008 - 00:12:17 CST)
- aneesh cna (Mon Sep 17 2007 - 05:33:29 CDT)
problem with tool command
- John Stone (Wed Jun 16 2004 - 10:12:50 CDT)
- Simon Latapie (Wed Jun 16 2004 - 09:38:26 CDT)
Problem with using bigdcd.tcl
- jnsong (Wed Mar 23 2011 - 00:06:00 CDT)
- Ajasja LjubetiÄ (Mon Mar 21 2011 - 03:36:15 CDT)
- jnsong (Sun Mar 20 2011 - 22:38:01 CDT)
- jnsong (Tue Mar 15 2011 - 21:42:10 CDT)
problem with vecsub, help with Tcl Script
- Axel Kohlmeyer (Thu Aug 31 2006 - 12:59:32 CDT)
- Leonardo Sepulveda Durán (Thu Aug 31 2006 - 12:25:29 CDT)
problem with viewing gromacs xtc files in vmd
- John Stone (Mon Mar 27 2006 - 10:12:51 CST)
- Nuno R. L. Ferreira (Mon Mar 27 2006 - 09:16:54 CST)
- hayagreevan R (Mon Mar 27 2006 - 05:30:22 CST)
problem with vmd
- John Stone (Sun Apr 02 2006 - 20:11:42 CDT)
- Super Sayan (Thu Mar 30 2006 - 01:09:20 CST)
- John Stone (Wed Mar 29 2006 - 14:26:40 CST)
- Super Sayan (Wed Mar 29 2006 - 11:49:12 CST)
- John Stone (Wed Mar 29 2006 - 10:05:30 CST)
- Super Sayan (Wed Mar 29 2006 - 00:41:43 CST)
- Shulin Zhuang (Tue Mar 28 2006 - 20:13:46 CST)
- John Stone (Tue Mar 28 2006 - 14:06:30 CST)
- Beniamino Sciacca (Tue Mar 28 2006 - 13:44:37 CST)
Problem with VMD 'animate' command
- John Stone (Tue Feb 14 2006 - 10:32:20 CST)
- Chandra Ramananjara (Mon Feb 13 2006 - 01:37:31 CST)
- Axel Kohlmeyer (Sun Feb 12 2006 - 20:00:46 CST)
- John Stone (Sun Feb 12 2006 - 16:02:36 CST)
- Chandra Ramananjara (Sun Feb 12 2006 - 10:12:36 CST)
Problem with VMD 1.8.4 on Mac OS X 10.4.6 PPC
- Robert Brunner (Tue Apr 25 2006 - 13:07:00 CDT)
- John Stone (Tue Apr 25 2006 - 10:29:38 CDT)
- Matteo Dal Peraro (Tue Apr 25 2006 - 10:22:54 CDT)
Problem with VMD 1.8a21 under MacOS X 10.2
- John Stone (Tue Aug 27 2002 - 12:53:55 CDT)
- Jeffrey D. Hartgerink (Tue Aug 27 2002 - 12:32:44 CDT)
Problem with VMD 1.9.1 (CUDA) on Snow Leopard
- John Stone (Tue Feb 14 2012 - 11:52:24 CST)
- Christian Mücksch (Mon Feb 13 2012 - 05:02:54 CST)
Problem with vmd and pqr file
- Axel Kohlmeyer (Sun Apr 18 2010 - 18:50:33 CDT)
- Axel Kohlmeyer (Sun Apr 18 2010 - 11:14:01 CDT)
- Knut Jørgen Bjuland (Sun Apr 18 2010 - 00:55:54 CDT)
- Rodrigo Silveira (Sat Apr 17 2010 - 14:33:58 CDT)
- Knut Jørgen Bjuland (Sat Apr 17 2010 - 13:51:13 CDT)
Problem with vmd and ssh -X
- John Stone (Fri Oct 23 2009 - 09:52:29 CDT)
- Thomas Lemmin (Fri Oct 23 2009 - 07:22:28 CDT)
- John Stone (Thu Oct 22 2009 - 10:58:34 CDT)
- Thomas Lemmin (Thu Oct 22 2009 - 06:39:16 CDT)
- Thomas Lemmin (Thu Oct 22 2009 - 02:51:44 CDT)
Problem with VMD on linux with Xig solved
- Russell Poyner (Wed Jul 24 2002 - 13:18:43 CDT)
Problem with Vmd on SGI + Cavelib
- John Stone (Wed Jul 16 2003 - 16:34:45 CDT)
- Romaric David (Wed Jul 16 2003 - 08:22:29 CDT)
- John Stone (Tue Jul 15 2003 - 23:33:55 CDT)
- Romaric David (Sat Jul 12 2003 - 06:20:52 CDT)
- John Stone (Fri Jul 11 2003 - 12:59:49 CDT)
- Romaric David (Fri Jul 11 2003 - 06:37:10 CDT)
problem with vmd/namd connection on linux
- John Duff (Wed Apr 19 2000 - 10:25:46 CDT)
- John Stone (Tue Apr 18 2000 - 18:49:25 CDT)
- John Duff (Tue Apr 18 2000 - 17:35:03 CDT)
Problem with vmdsphere.frag shader
- Axel Kohlmeyer (Mon Aug 28 2006 - 12:32:16 CDT)
- John Stone (Mon Aug 28 2006 - 11:58:37 CDT)
- John Stone (Mon Aug 28 2006 - 11:44:38 CDT)
- Mario Valle (Mon Aug 28 2006 - 09:00:52 CDT)
Problem with wait
- daniel aguayo (Tue Apr 25 2006 - 14:43:21 CDT)
- John Stone (Tue Apr 25 2006 - 12:59:07 CDT)
- daniel aguayo (Mon Apr 24 2006 - 20:39:19 CDT)
Problem with webpdgplugin-s.o and TCL while linking
- Do_Ba Duc (Tue Dec 06 2005 - 19:42:55 CST)
problem with writepdb
- Jim Phillips (Mon Oct 24 2005 - 17:33:23 CDT)
- John Stone (Mon Oct 24 2005 - 13:10:24 CDT)
- Chang, Christopher (Mon Oct 24 2005 - 11:15:22 CDT)
- Samuel Flores (Mon Oct 24 2005 - 07:00:04 CDT)
- JC Gumbart (Mon Oct 17 2005 - 19:25:49 CDT)
- Samuel Flores (Mon Oct 17 2005 - 19:16:33 CDT)
problem writing correct format psf file from vmd tk-console
- John Stone (Wed Jan 17 2007 - 12:26:48 CST)
- Himanshu Khandelia (Wed Jan 17 2007 - 05:43:06 CST)
Problem writing trajectory to "crd" (Amber) format?
- John Stone (Tue Jul 22 2008 - 14:01:32 CDT)
- Axel Kohlmeyer (Wed Jul 16 2008 - 09:31:59 CDT)
- Ian (Wed Jul 16 2008 - 04:43:24 CDT)
problem/bug? calling hbonds within a loop over the residues (tcl)
- Jerome Henin (Fri Dec 08 2006 - 10:08:32 CST)
- Nels Thorsteinson (Thu Dec 07 2006 - 17:31:01 CST)
Problem: I got a runtime error "CthCreate failed to create fiber!".
- Chuck (Sun Jul 12 2009 - 03:49:44 CDT)
Problem: VMD 1.8.7 beta 5 does not launch on AIX
- Stanislav Polonsky (Fri Jul 24 2009 - 13:24:45 CDT)
- Axel Kohlmeyer (Fri Jul 24 2009 - 09:22:09 CDT)
- Stanislav Polonsky (Fri Jul 24 2009 - 08:46:05 CDT)
Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer
- Stanislav Polonsky (Thu Jul 23 2009 - 16:42:37 CDT)
- John Stone (Thu Jul 23 2009 - 12:49:24 CDT)
- Axel Kohlmeyer (Thu Jul 23 2009 - 12:29:49 CDT)
- Stanislav Polonsky (Thu Jul 23 2009 - 12:21:14 CDT)
- Axel Kohlmeyer (Thu Jul 23 2009 - 11:23:34 CDT)
- Stanislav Polonsky (Thu Jul 23 2009 - 10:39:36 CDT)
- Stanislav Polonsky (Mon Jul 20 2009 - 16:19:05 CDT)
- Axel Kohlmeyer (Mon Jul 20 2009 - 15:43:56 CDT)
- Stanislav Polonsky (Mon Jul 20 2009 - 13:16:31 CDT)
- John Stone (Mon Jul 20 2009 - 11:43:38 CDT)
- Axel Kohlmeyer (Mon Jul 20 2009 - 11:36:28 CDT)
- Stanislav Polonsky (Mon Jul 20 2009 - 11:40:40 CDT)
- John Stone (Mon Jul 20 2009 - 11:29:20 CDT)
- Stanislav Polonsky (Mon Jul 20 2009 - 11:04:25 CDT)
problem_1
- vivek sharma (Sat Oct 09 2004 - 01:16:55 CDT)
Problems after installation (ubuntu 8.04)
- Alexander A. Vakhrushev (Tue Oct 07 2008 - 12:08:35 CDT)
- John Stone (Tue Oct 07 2008 - 12:05:17 CDT)
- Alexander A. Vakhrushev (Tue Oct 07 2008 - 12:03:16 CDT)
- John Stone (Tue Oct 07 2008 - 11:46:41 CDT)
- Anirban Ghosh (Sat Oct 04 2008 - 13:04:09 CDT)
- Alexander A. Vakhrushev (Fri Oct 03 2008 - 22:55:52 CDT)
- Tomek Wlodarski (Fri Oct 03 2008 - 16:23:41 CDT)
- John Stone (Fri Oct 03 2008 - 09:49:22 CDT)
- Alexander A. Vakhrushev (Fri Oct 03 2008 - 08:43:39 CDT)
- Tomek Wlodarski (Fri Oct 03 2008 - 07:23:25 CDT)
problems compiling vmd (1.8.1)
- John Stone (Mon Aug 04 2003 - 14:34:24 CDT)
problems displaying newcartoon representation
- Joseph Bylund (Thu Nov 12 2009 - 12:43:24 CST)
- Axel Kohlmeyer (Thu Nov 12 2009 - 12:09:16 CST)
- John Stone (Thu Nov 12 2009 - 12:24:42 CST)
- Robert Meklemburg (Thu Nov 12 2009 - 11:17:19 CST)
Problems in setting up low pH systems
- Axel Kohlmeyer (Wed Jan 11 2012 - 21:26:28 CST)
- Sheng, Zi-Zhang (Wed Jan 11 2012 - 20:26:49 CST)
- Sheng, Zi-Zhang (Wed Jan 11 2012 - 10:03:10 CST)
problems loading dcd files
- John Stone (Thu Jul 15 2004 - 13:58:24 CDT)
- Patti Schaefer (Thu Jul 15 2004 - 13:55:18 CDT)
Problems loading shared object, vmd1.8 linux mesa binaries
- Christopher D. Wassman (Tue Feb 25 2003 - 01:49:09 CST)
- John Stone (Mon Feb 24 2003 - 11:28:14 CST)
- Christopher D. Wassman (Sun Feb 23 2003 - 21:59:24 CST)
Problems Opening Large .dx File
- John Stone (Wed Oct 17 2007 - 17:28:37 CDT)
- Corenflos, Steven Charles (Wed Oct 17 2007 - 17:09:54 CDT)
- Axel Kohlmeyer (Mon Oct 15 2007 - 15:56:28 CDT)
- John Stone (Mon Oct 15 2007 - 15:26:55 CDT)
- Corenflos, Steven Charles (Mon Oct 15 2007 - 11:30:04 CDT)
Problems running APBS
- John Stone (Tue Mar 13 2007 - 14:32:22 CDT)
- John Stone (Tue Mar 13 2007 - 13:44:45 CDT)
- Per Jr. Greisen (Tue Mar 13 2007 - 13:32:04 CDT)
Problems running VMD-CUDA with GNU-Linux
- Francesco Pietra (Tue Aug 02 2011 - 16:52:01 CDT)
problems to launch VMD 1.83 in MAC os x tiger
- Robert Brunner (Fri Jul 08 2005 - 15:17:02 CDT)
- John Stone (Fri Jul 08 2005 - 12:48:39 CDT)
- Miguel Valvano (Fri Jul 08 2005 - 11:20:35 CDT)
Problems to load Gaussian .log file in Paratool
- Jan Saam (Tue Jul 31 2007 - 11:05:34 CDT)
- Alexandre Suman de Araujo (Mon Jul 30 2007 - 13:05:56 CDT)
Problems with "animate next" inside for-loops
- Axel Kohlmeyer (Wed Mar 10 2010 - 17:23:04 CST)
- nicholas lee (Wed Mar 10 2010 - 16:41:45 CST)
Problems with a multiple orbital cube file
- Axel Kohlmeyer (Fri Sep 14 2007 - 07:32:14 CDT)
- Dr. Seth Olsen (Fri Sep 14 2007 - 01:49:38 CDT)
problems with a script
- John Stone (Fri Jan 25 2008 - 00:15:14 CST)
- Irene Newhouse (Thu Jan 24 2008 - 16:39:40 CST)
problems with ADP vanadate
- Daniel Kennedy (Sun Sep 16 2007 - 11:12:09 CDT)
Problems with AMBER trajectories (MOVIE!) and crd-files
- Axel Kohlmeyer (Tue Aug 30 2005 - 13:43:29 CDT)
- John Stone (Tue Aug 30 2005 - 10:15:22 CDT)
- Matthias Negri (Tue Aug 30 2005 - 06:53:28 CDT)
- John Stone (Mon Aug 29 2005 - 09:43:30 CDT)
- Matthias Negri (Mon Aug 29 2005 - 04:19:19 CDT)
Problems with APBS calculations
- Ramon Garduno-Juarez (Fri May 20 2011 - 12:18:48 CDT)
- Chris Harrison (Thu May 19 2011 - 21:37:36 CDT)
- Ramon Garduno-Juarez (Thu May 19 2011 - 20:51:53 CDT)
Problems with APBS Compatibility
- John Stone (Fri Jun 02 2006 - 13:40:55 CDT)
- Vyom Sharma (Thu Jun 01 2006 - 21:19:19 CDT)
- John Stone (Thu Jun 01 2006 - 18:01:15 CDT)
- Vyom Sharma (Thu Jun 01 2006 - 17:34:04 CDT)
problems with atomselect: missing selection
- Axel Kohlmeyer (Mon Nov 12 2007 - 06:38:01 CST)
- Philipp Schön (Mon Nov 12 2007 - 05:23:32 CST)
problems with Autoimd on mac os x ( panther )
- Mike McCallum (Thu Apr 29 2004 - 22:02:26 CDT)
- Arieana Moore (Thu Apr 29 2004 - 19:02:09 CDT)
problems with autoionize
- John Stone (Thu Aug 24 2006 - 21:52:35 CDT)
- L. Michel Espinoza-Fonseca (Thu Aug 24 2006 - 13:17:30 CDT)
- Peter Freddolino (Tue Aug 22 2006 - 22:54:31 CDT)
- John Stone (Tue Aug 22 2006 - 21:48:24 CDT)
- L. Michel Espinoza-Fonseca (Tue Aug 22 2006 - 21:18:06 CDT)
- John Stone (Tue Aug 22 2006 - 20:56:03 CDT)
- L. Michel Espinoza-Fonseca (Tue Aug 22 2006 - 19:16:29 CDT)
- John Stone (Tue Aug 22 2006 - 19:02:12 CDT)
- Axel Kohlmeyer (Tue Aug 22 2006 - 18:10:54 CDT)
- L. Michel Espinoza-Fonseca (Tue Aug 22 2006 - 17:55:02 CDT)
- John Stone (Tue Aug 22 2006 - 17:45:34 CDT)
- L. Michel Espinoza-Fonseca (Tue Aug 22 2006 - 17:36:39 CDT)
problems with autopsf & psfgen
- JC Gumbart (Fri Sep 12 2008 - 02:51:03 CDT)
- Irene Newhouse (Tue Sep 09 2008 - 13:50:10 CDT)
problems with CG protein-lipidbilayer-water system
- Anton Arkhipov (Mon Nov 23 2009 - 00:51:43 CST)
- Francesco Pietra (Sun Nov 22 2009 - 15:32:18 CST)
- Axel Kohlmeyer (Sat Nov 21 2009 - 16:54:04 CST)
- Francesco Pietra (Sat Nov 21 2009 - 12:00:54 CST)
Problems with Charmm dcd
- John Stone (Wed Oct 27 1999 - 09:23:35 CDT)
- Guy Coates (Wed Oct 27 1999 - 07:24:17 CDT)
Problems with color
- John Stone (Mon Nov 11 2002 - 10:07:57 CST)
- #WONG CHEE HOW# (Mon Nov 11 2002 - 09:52:17 CST)
Problems with for loop
- John Stone (Tue Apr 10 2012 - 14:15:07 CDT)
- Andrés Morales (Tue Apr 10 2012 - 11:43:10 CDT)
Problems with graphics.color function under VMD's python interpreter
- John Stone (Fri Feb 13 2004 - 17:43:27 CST)
- Manuel Melle-Franco (Tue Jan 20 2004 - 10:20:55 CST)
problems with hotkeys and "user add key" command
- John Stone (Mon Apr 05 2010 - 16:45:53 CDT)
- Rocchia Walter (Mon Apr 05 2010 - 16:31:03 CDT)
problems with large structures
- John Stone (Fri Dec 01 2006 - 10:30:29 CST)
- hkhandel_at_memphys.sdu.dk (Fri Dec 01 2006 - 09:24:57 CST)
Problems with licorice representation when rendering 3D PDF for Power Point
- John Stone (Fri Apr 23 2010 - 12:54:49 CDT)
- Bob Johnson (Fri Apr 23 2010 - 09:59:08 CDT)
- John Stone (Thu Apr 22 2010 - 17:22:33 CDT)
- Bob Johnson (Thu Apr 22 2010 - 14:56:52 CDT)
Problems with Linux install...
- Axel Kohlmeyer (Wed Jun 09 2010 - 21:26:53 CDT)
- Luis Guillermo Cota Preciado (Wed Jun 09 2010 - 18:35:18 CDT)
- John Stone (Wed Jun 09 2010 - 16:17:18 CDT)
- Luis Guillermo Cota Preciado (Mon Jun 07 2010 - 00:17:58 CDT)
- John Stone (Fri Jun 04 2010 - 16:19:09 CDT)
- Axel Kohlmeyer (Fri Jun 04 2010 - 14:18:40 CDT)
- Luis Guillermo Cota Preciado (Fri Jun 04 2010 - 13:30:30 CDT)
- Luis Guillermo Cota Preciado (Fri Jun 04 2010 - 10:19:01 CDT)
- John Stone (Fri Jun 04 2010 - 08:37:54 CDT)
- Luis Guillermo Cota Preciado (Fri Jun 04 2010 - 02:32:23 CDT)
Problems with Mac OSX VMD and certain PDB files
- John Stone (Wed Nov 24 2004 - 13:26:50 CST)
- bozell, joe (Wed Nov 24 2004 - 12:34:47 CST)
problems with manipulating control switches on VMS main menu
- John Stone (Thu Oct 30 2008 - 02:13:11 CDT)
- Piotr Cieplak (Wed Oct 29 2008 - 19:52:24 CDT)
problems with MDenergy
- Irene Newhouse (Wed Jan 30 2008 - 15:06:49 CST)
problems with MDFF
- Gregorio Fernandez (Mon Apr 09 2012 - 06:21:33 CDT)
- Gregorio Fernandez (Fri Apr 06 2012 - 02:42:22 CDT)
Problems with mouse programming in VMD
- John Stone (Sun Apr 30 2006 - 09:16:26 CDT)
- Chang Hu (Sun Apr 30 2006 - 01:03:07 CDT)
- John Stone (Sat Apr 29 2006 - 22:50:11 CDT)
- Chang Hu (Sat Apr 29 2006 - 21:05:37 CDT)
- John Stone (Thu Apr 27 2006 - 12:45:44 CDT)
- Chang Hu (Thu Apr 27 2006 - 12:36:23 CDT)
- John Stone (Thu Apr 27 2006 - 11:52:55 CDT)
- Chang Hu (Wed Apr 26 2006 - 23:19:57 CDT)
problems with MSMS
- John Stone (Sat Aug 15 1998 - 22:00:51 CDT)
- Patric Beuthen (Fri Jun 26 1998 - 08:38:12 CDT)
Problems with NewCartoon Cartoon Representations
- Peter Freddolino (Tue Jan 06 2009 - 19:48:47 CST)
- haosheng_at_hec.utah.edu (Tue Jan 06 2009 - 15:39:43 CST)
Problems with Newcartoon representation
- Cesar Luis Avila (Wed Aug 06 2008 - 14:28:00 CDT)
- John Stone (Wed Aug 06 2008 - 13:38:00 CDT)
- Cesar Luis Avila (Wed Aug 06 2008 - 11:17:58 CDT)
- John Stone (Wed Aug 06 2008 - 11:33:28 CDT)
Problems with PDB file format in VMD
- Axel Kohlmeyer (Thu Mar 27 2008 - 20:42:45 CDT)
- cong chen (Thu Mar 27 2008 - 18:55:38 CDT)
Problems with povray
- Luis Rosales (Tue Oct 26 2004 - 15:11:53 CDT)
- John Stone (Tue Oct 26 2004 - 15:20:48 CDT)
- John Stone (Mon Oct 25 2004 - 14:01:21 CDT)
- Luis Rosales (Mon Oct 25 2004 - 13:47:59 CDT)
- John Stone (Mon Oct 25 2004 - 13:15:43 CDT)
- Dominique Vlieghe (Mon Oct 25 2004 - 07:13:11 CDT)
Problems with Psf using Charmm format, solvate and autoionize
- Jim Phillips (Thu Jun 09 2005 - 14:02:18 CDT)
- Chang, Christopher (Wed Jun 08 2005 - 15:12:41 CDT)
- Leonardo Sepulveda Durán (Wed Jun 08 2005 - 12:55:21 CDT)
Problems with PSFGEN
- Dave Arias (NelsonDa) (Mon Feb 27 2012 - 13:18:07 CST)
- Axel Kohlmeyer (Thu Jul 16 2009 - 17:30:59 CDT)
- avl211_at_lehigh.edu (Thu Jul 16 2009 - 16:06:31 CDT)
Problems with PSFGEN in Simulation of Water Permeation through nanotubes
- David L. Azevedo (Fri Sep 24 2004 - 08:52:13 CDT)
Problems with RMSD
- John Stone (Mon Mar 08 2004 - 17:31:26 CST)
- Maik Götte (Mon Mar 08 2004 - 09:20:56 CST)
Problems with selecting atoms for representations
- Axel Kohlmeyer (Tue Oct 13 2009 - 11:29:09 CDT)
- Joseph Bylund (Tue Oct 13 2009 - 10:39:52 CDT)
Problems with Spaceball 4000FLX
- John Stone (Thu Feb 02 2006 - 17:31:45 CST)
- Pietro Amodeo (Thu Feb 02 2006 - 15:04:58 CST)
problems with stereo display on NVIDIA Quadro4 750 XGL
- Karsten Suhre (Tue Jan 14 2003 - 02:12:49 CST)
problems with stereo display on NVIDIA Quadro4 750 XGL]
- John Stone (Tue Jan 14 2003 - 13:07:58 CST)
Problems with Stride
- John Stone (Mon Oct 05 2009 - 21:08:57 CDT)
- Martin K. Jones (Fri Oct 02 2009 - 17:00:12 CDT)
- John Stone (Fri Oct 02 2009 - 16:22:26 CDT)
- John Stone (Fri Oct 02 2009 - 16:24:48 CDT)
- Martin K. Jones (Fri Oct 02 2009 - 13:16:54 CDT)
- Axel Kohlmeyer (Fri Oct 02 2009 - 13:06:45 CDT)
- Martin K. Jones (Fri Oct 02 2009 - 12:18:41 CDT)
Problems with tcl/tk 8.5
- Axel Kohlmeyer (Tue Jan 20 2009 - 08:53:02 CST)
- John Stone (Tue Jan 20 2009 - 08:51:08 CST)
- Bernd Doser (Tue Jan 20 2009 - 02:08:05 CST)
Problems with Terminal and 1.8.4.a22 under OSX (Tiger 10.4.3)
- John Stone (Tue Nov 08 2005 - 10:04:01 CST)
- kamilt_at_ibmb.uni.wroc.pl (Sun Nov 06 2005 - 16:08:34 CST)
problems with the Surf...
- John Stone (Fri Mar 14 2003 - 11:09:15 CST)
- Lubos Vrbka (Thu Mar 06 2003 - 10:36:08 CST)
- John Stone (Thu Mar 06 2003 - 10:18:30 CST)
- John Stone (Thu Mar 06 2003 - 10:07:23 CST)
- Lubos Vrbka (Thu Mar 06 2003 - 10:00:38 CST)
problems with vecdist in accepting variables
- John Stone (Tue Sep 21 2004 - 16:40:26 CDT)
- Jerry Ebalunode (Tue Sep 21 2004 - 11:27:15 CDT)
- Justin Gullingsrud (Tue Sep 21 2004 - 12:43:23 CDT)
- Jerry Ebalunode (Tue Sep 21 2004 - 04:38:01 CDT)
Problems with VMD 1.5b1 and XFree4/DRI OpenGL under linux
- John Stone (Thu Jun 29 2000 - 15:12:53 CDT)
- Miguel Teodoro (Thu Jun 29 2000 - 11:37:34 CDT)
- John Stone (Mon Jun 26 2000 - 15:57:45 CDT)
- Miguel Teodoro (Tue Jun 13 2000 - 18:39:48 CDT)
Problems with VMD in Federa 4 (x86_64)
- John Stone (Sat Aug 27 2005 - 22:30:18 CDT)
- Adrian turjanski (Sat Aug 27 2005 - 17:22:00 CDT)
Problems with VMD installation Fedora 12 64bits
- John Stone (Sat Mar 13 2010 - 08:50:37 CST)
- Edith Euan (Sat Mar 13 2010 - 00:57:39 CST)
Problems with vmd under Linux
- Simon Hogg (Thu Jul 31 1997 - 05:53:01 CDT)
problems with VMD under linux/64-bit machine
- John Stone (Fri Sep 12 2008 - 16:03:48 CDT)
- Irene Newhouse (Fri Sep 12 2008 - 15:17:56 CDT)
process and plot matrix data
- John Stone (Fri Apr 20 2007 - 14:47:44 CDT)
- Vlad Cojocaru (Fri Apr 20 2007 - 04:28:12 CDT)
PRODRG generated .gro file
- Axel Kohlmeyer (Tue Aug 22 2006 - 21:51:42 CDT)
- Marc Charendoff (Tue Aug 22 2006 - 21:03:41 CDT)
producing high quality video on Mac
- John Stone (Wed Feb 17 2010 - 19:57:08 CST)
- Dan Lussier (Wed Feb 17 2010 - 17:51:03 CST)
progports, new project
- vmd-l_at_spider.med.jhmi.edu (Tue Aug 03 2004 - 11:02:09 CDT)
program finishes before bigdcd is ececuted completely
- Èùìáò Åõáããåëéäçò (Tue Sep 11 2007 - 10:07:23 CDT)
- Leonardo Trabuco (Tue Sep 11 2007 - 08:22:11 CDT)
- Èùìáò Åõáããåëéäçò (Tue Sep 11 2007 - 06:19:53 CDT)
- Leonardo Trabuco (Mon Sep 10 2007 - 16:50:39 CDT)
- Èùìáò Åõáããåëéäçò (Mon Sep 10 2007 - 14:57:11 CDT)
program finishes before bigdcd is executed completely
- Èùìáò Åõáããåëéäçò (Tue Sep 11 2007 - 17:26:12 CDT)
- Leonardo Trabuco (Tue Sep 11 2007 - 14:51:11 CDT)
- Èùìáò Åõáããåëéäçò (Tue Sep 11 2007 - 13:56:32 CDT)
Programming problem (making bonds)
- Dr. Paul Fons (Sat Aug 25 2001 - 19:51:09 CDT)
Progress Bar for the Elapsed Time: rendering problem
- Axel Kohlmeyer (Thu Feb 05 2009 - 17:23:40 CST)
- Suman Chakrabarty (Thu Feb 05 2009 - 16:42:20 CST)
Projection of a vector on to another.
- bo liu (Sat Sep 20 2008 - 06:09:46 CDT)
- John Stone (Sat Sep 20 2008 - 02:11:41 CDT)
- bo liu (Fri Sep 19 2008 - 23:03:42 CDT)
- Katherine Parra (Fri Sep 19 2008 - 13:56:01 CDT)
Projection on plane
- John Stone (Fri Aug 02 2002 - 10:48:41 CDT)
- Raj Gupta (Fri Aug 02 2002 - 10:41:38 CDT)
proline trans to cis
- Roman Petrenko (Thu Feb 26 2009 - 19:20:07 CST)
properly applying patches to create DPPC
- JC Gumbart (Thu Mar 11 2010 - 17:48:11 CST)
- JC Gumbart (Wed Mar 10 2010 - 22:56:48 CST)
- Ronald Salesky (Wed Mar 10 2010 - 18:33:59 CST)
property iterate over a range (representation / draw style)
- bonicoli_at_loria.fr (Wed Feb 04 2009 - 10:04:40 CST)
- Axel Kohlmeyer (Tue Feb 03 2009 - 12:10:49 CST)
- bonicoli_at_loria.fr (Tue Feb 03 2009 - 11:16:12 CST)
PROPKA doesn't work in recent VMD1.9.1
- Axel Kohlmeyer (Sun Feb 12 2012 - 09:47:21 CST)
- Albert (Sun Feb 12 2012 - 05:25:14 CST)
protein breaks into parts after converting trajectory file to pdb file
- Cun Zhang (Mon Sep 27 2010 - 20:17:33 CDT)
- Axel Kohlmeyer (Mon Sep 27 2010 - 10:32:58 CDT)
- Joyce Tan (Mon Sep 27 2010 - 04:58:48 CDT)
Protein cavities
- Axel Kohlmeyer (Sun May 29 2011 - 17:31:44 CDT)
- BRAULIO VALDEBENITO MATURANA (Sun May 29 2011 - 16:42:33 CDT)
- Francesco Oteri (Sun May 29 2011 - 07:09:59 CDT)
- Axel Kohlmeyer (Sun May 29 2011 - 03:17:08 CDT)
- BRAULIO VALDEBENITO MATURANA (Sat May 28 2011 - 23:26:02 CDT)
- Irene Newhouse (Fri May 27 2011 - 16:52:50 CDT)
- John Stone (Fri May 27 2011 - 14:47:03 CDT)
- BRAULIO FAVIÁN VALDEBENITO MATURANA (Thu May 26 2011 - 12:41:48 CDT)
Protein coordinate rotation
- John Stone (Fri Sep 05 2008 - 13:07:55 CDT)
- ianboru_at_email.arizona.edu (Fri Sep 05 2008 - 12:40:48 CDT)
protein embedding membrane
- javier.vallejos_at_correo.usach.cl (Fri Sep 08 2006 - 18:06:50 CDT)
protein in membrane
- daniel aguayo (Wed Sep 13 2006 - 21:32:19 CDT)
- Akshay Patny (Tue Sep 12 2006 - 16:05:04 CDT)
- Ting Wang (Tue Sep 12 2006 - 16:03:43 CDT)
- Akshay Patny (Tue Sep 12 2006 - 15:45:31 CDT)
- Ting Wang (Tue Sep 12 2006 - 13:58:07 CDT)
- Axel Kohlmeyer (Fri Sep 08 2006 - 18:12:02 CDT)
- javier.vallejos_at_correo.usach.cl (Fri Sep 08 2006 - 17:35:27 CDT)
protein peptide alignment.
- Luis Gracia (Tue Feb 22 2005 - 00:20:10 CST)
- Peter Freddolino (Sat Feb 12 2005 - 13:23:01 CST)
- matteo.pennestri_at_virgilio.it (Sat Feb 12 2005 - 12:30:51 CST)
Protein Reorientation
- John Stone (Thu Mar 06 2003 - 10:52:52 CST)
- Gemma Kinsella (Mon Mar 03 2003 - 08:39:51 CST)
protein surface and volume code
- Andrew Dalke (Wed Jan 14 1998 - 22:17:10 CST)
Protein volume and cavityes
- spitaleri.andrea_at_hsr.it (Wed Dec 07 2005 - 16:32:33 CST)
- Ran Friedman (Wed Dec 07 2005 - 11:44:25 CST)
- John Stone (Wed Dec 07 2005 - 10:05:27 CST)
- Anthony Cruz (Wed Dec 07 2005 - 13:01:53 CST)
Protein-ligand contact
- flavio seixas (Mon Apr 30 2012 - 18:29:17 CDT)
- Dong Luo (Wed Dec 21 2011 - 11:13:26 CST)
- flavio seixas (Tue Dec 20 2011 - 08:10:15 CST)
protein-lipids v z coordinate
- John Stone (Tue Aug 23 2005 - 12:58:50 CDT)
- syma (Tue Aug 23 2005 - 12:06:27 CDT)
protein-water hydrogen bonds
- Roman Petrenko (Tue Aug 12 2008 - 10:52:32 CDT)
- Axel Kohlmeyer (Tue Aug 12 2008 - 10:53:35 CDT)
- Axel Kohlmeyer (Tue Aug 12 2008 - 10:37:45 CDT)
- Roman Petrenko (Tue Aug 12 2008 - 10:05:46 CDT)
protein-water RDF
- Axel Kohlmeyer (Mon Jun 27 2011 - 09:08:35 CDT)
- Ajasja LjubetiÄ (Mon Jun 27 2011 - 03:05:03 CDT)
- divya nayar (Mon Jun 27 2011 - 01:15:21 CDT)
protein/carbohydrate
- Aaron Oakley (Tue Sep 02 2003 - 03:07:53 CDT)
- Aaron Oakley (Fri Aug 08 2003 - 22:48:54 CDT)
proto-HEME parameters
- Cesar Millan (Thu Apr 06 2006 - 17:05:56 CDT)
Protonated GLU/ASP in PSF generation
- Justin Gullingsrud (Sun Aug 29 2004 - 21:01:52 CDT)
- Vani Krishna (Sun Aug 29 2004 - 16:23:00 CDT)
proximity of residues
- Francesco Pietra (Wed Jan 23 2008 - 09:19:12 CST)
- Axel Kohlmeyer (Wed Jan 23 2008 - 04:56:19 CST)
- L. Michel Espinoza-Fonseca (Wed Jan 23 2008 - 04:21:01 CST)
- Axel Kohlmeyer (Wed Jan 23 2008 - 03:49:49 CST)
- Francesco Pietra (Wed Jan 23 2008 - 01:40:51 CST)
PSC WORKSHOP: COMPUTATIONAL BIOPHYSICS WORKSHOP
- Troy Wymore (Fri Oct 14 2005 - 13:13:15 CDT)
- Troy Wymore (Thu Sep 15 2005 - 11:15:13 CDT)
psf and top
- John Stone (Thu Mar 10 2011 - 09:51:58 CST)
- Francesco Oteri (Thu Mar 10 2011 - 09:10:05 CST)
psf file
- JC Gumbart (Tue Jun 03 2008 - 15:24:36 CDT)
- Katherine Parra (Tue Jun 03 2008 - 11:47:43 CDT)
- Jindal Shah (Tue Jan 17 2006 - 13:21:49 CST)
psf file for Doxorubicin
- mishacat_at_udm.ru (Thu Apr 16 2009 - 08:32:14 CDT)
psf file generation.?
- John Stone (Fri Feb 12 2010 - 00:00:21 CST)
- zubin mehta (Wed Feb 10 2010 - 05:58:45 CST)
psf file generation: once again
- Peter Freddolino (Thu Sep 25 2008 - 08:12:34 CDT)
- Rudra Banerjee (Wed Sep 24 2008 - 23:42:22 CDT)
- Rudra Banerjee (Wed Sep 24 2008 - 22:45:49 CDT)
- Peter Freddolino (Wed Sep 24 2008 - 23:01:48 CDT)
- Rudra Banerjee (Wed Sep 24 2008 - 23:11:04 CDT)
PSF files append!!
- John Stone (Fri Nov 17 2006 - 16:33:52 CST)
- CSM USP (Wed Nov 15 2006 - 13:06:06 CST)
psf for already hydrogen-added structure
- Peter Freddolino (Thu Jul 20 2006 - 20:22:05 CDT)
- hori koshii (Thu Jul 20 2006 - 15:09:14 CDT)
PSF for AMBER top + crd files
- Axel Kohlmeyer (Tue Sep 15 2009 - 17:10:32 CDT)
- John Stone (Tue Sep 15 2009 - 16:56:34 CDT)
- Goutham (Tue Sep 15 2009 - 16:35:23 CDT)
psf for CNT?
- Axel Kohlmeyer (Wed Sep 09 2009 - 10:46:49 CDT)
- Ronald Salesky (Wed Sep 09 2009 - 09:55:05 CDT)
psf for protein
- JC Gumbart (Thu Sep 21 2006 - 18:13:02 CDT)
- JC Gumbart (Thu Sep 21 2006 - 17:42:35 CDT)
- JC Gumbart (Wed Sep 20 2006 - 14:43:38 CDT)
- Al-Rawi, Ahlam (Tue Sep 19 2006 - 12:03:55 CDT)
- JC Gumbart (Tue Sep 19 2006 - 10:43:53 CDT)
- Al-Rawi, Ahlam (Mon Sep 18 2006 - 17:24:27 CDT)
psf format
- Axel Kohlmeyer (Sun Oct 31 2010 - 13:54:12 CDT)
- masoumeh ozmaeian (Sun Oct 31 2010 - 13:37:18 CDT)
- Axel Kohlmeyer (Sun Oct 17 2010 - 13:36:34 CDT)
- masoumeh ozmaeian (Sun Oct 17 2010 - 02:26:04 CDT)
psf gen charmm format
- John Stone (Wed Oct 20 2010 - 13:57:18 CDT)
- Hannes Loeffler (Mon Oct 11 2010 - 07:25:58 CDT)
- Jorgen Simonsen (Wed Sep 22 2010 - 06:18:45 CDT)
PSF Generation
- Rogan Carr (Tue Feb 16 2010 - 09:24:06 CST)
- BIPLAB NANDI (Mon Feb 15 2010 - 23:10:53 CST)
- Leonardo G. Trabuco (Fri Jun 02 2006 - 13:22:41 CDT)
- Moumita Maiti (Fri Jun 02 2006 - 11:56:17 CDT)
PSF generation for proteins with isopeptide bonds
- Zack Scholl (Thu Apr 26 2012 - 19:57:48 CDT)
psf generation of circular proteins
- John Stone (Thu Jun 12 2008 - 00:22:46 CDT)
- Rabab Toubar (Wed Jun 11 2008 - 13:30:05 CDT)
- John Stone (Wed Jun 11 2008 - 10:18:02 CDT)
- Rabab Toubar (Sun Jun 08 2008 - 09:36:00 CDT)
PSF tools in windows and long paths
- Peter Freddolino (Wed Feb 15 2006 - 10:34:21 CST)
- Jacob Pøhlsgaard (Wed Feb 15 2006 - 02:51:06 CST)
- John Stone (Tue Feb 14 2006 - 16:11:54 CST)
- L. Michel Espinoza-Fonseca (Tue Feb 14 2006 - 04:38:34 CST)
- Jacob Pøhlsgaard (Tue Feb 14 2006 - 03:47:34 CST)
PSF works in NAMD but not in VMD
- Esben A. Gad (Wed Jun 25 2008 - 06:42:53 CDT)
- Peter Freddolino (Tue Jun 24 2008 - 07:19:00 CDT)
- Esben A. Gad (Tue Jun 24 2008 - 03:08:07 CDT)
- Axel Kohlmeyer (Mon Jun 23 2008 - 10:18:33 CDT)
- Esben A. Gad (Mon Jun 23 2008 - 07:20:08 CDT)
- Axel Kohlmeyer (Fri Jun 20 2008 - 09:57:37 CDT)
- Peter Freddolino (Fri Jun 20 2008 - 08:04:24 CDT)
- Esben A. Gad (Fri Jun 20 2008 - 06:05:22 CDT)
- Peter Freddolino (Wed Jun 18 2008 - 06:53:50 CDT)
- Esben A. Gad (Wed Jun 18 2008 - 03:17:04 CDT)
PSF_and_PDB_file_of_LIGAND
- Peter Freddolino (Fri Jun 01 2007 - 11:00:26 CDT)
- Karol Kaszuba (Fri Jun 01 2007 - 05:29:53 CDT)
psfgen
- John Stone (Thu Jun 22 2006 - 15:45:15 CDT)
- Marcela Madrid (Thu Jun 22 2006 - 15:28:23 CDT)
- Oded Kleifeld (Mon Aug 25 2003 - 19:50:26 CDT)
psfgen - loss of disulfide bonds
- Peter Freddolino (Thu Sep 11 2008 - 22:33:18 CDT)
- Roman Petrenko (Thu Sep 11 2008 - 22:50:34 CDT)
- Rabab Toubar (Thu Sep 11 2008 - 21:35:53 CDT)
psfgen 1.4.7 and CMAP extended PSF
- Gianluca Interlandi (Wed Dec 08 2010 - 19:11:17 CST)
psfgen 999 waters resname X column
- Low Soo Mei (Mon Apr 07 2008 - 21:02:37 CDT)
- John Stone (Mon Apr 07 2008 - 11:54:54 CDT)
- Low Soo Mei (Mon Apr 07 2008 - 05:31:52 CDT)
Psfgen : apply patches
- Peter Freddolino (Tue Nov 04 2008 - 07:16:07 CST)
- Nicolas Floquet (Tue Nov 04 2008 - 06:51:57 CST)
psfgen and DNA
- Chang, Christopher (Thu Jul 07 2005 - 10:54:42 CDT)
- Meunier, Vincent (Wed Jul 06 2005 - 20:46:39 CDT)
PSFGEN and Reading Bonds from PDB Files
- Axel Kohlmeyer (Mon Feb 06 2012 - 11:52:27 CST)
- Rajan Vatassery (Mon Feb 06 2012 - 11:02:14 CST)
- flavio seixas (Sun Feb 05 2012 - 18:24:40 CST)
- Chris Harrison (Sun Feb 05 2012 - 15:45:19 CST)
- Axel Kohlmeyer (Sun Feb 05 2012 - 15:36:29 CST)
- Rajan Vatassery (Sun Feb 05 2012 - 14:13:43 CST)
psfgen and xplor topology
- Jerry Xu (Tue Oct 26 2004 - 15:16:26 CDT)
- Jim Phillips (Tue Oct 26 2004 - 13:31:45 CDT)
- Charles McCallum (Tue Oct 26 2004 - 11:36:37 CDT)
- Marc Q. Ma (Tue Oct 26 2004 - 11:25:56 CDT)
- Jim Phillips (Tue Oct 26 2004 - 10:32:26 CDT)
- Charles McCallum (Tue Oct 26 2004 - 09:50:08 CDT)
- Marc Q. Ma (Tue Oct 26 2004 - 08:17:25 CDT)
- Charles McCallum (Mon Oct 25 2004 - 22:33:48 CDT)
- Marc Q. Ma (Mon Oct 25 2004 - 15:08:03 CDT)
psfgen crashes VMD
- John Stone (Fri Jun 07 2002 - 11:44:41 CDT)
- jrui_at_ci.uc.pt (Thu Jun 06 2002 - 19:55:28 CDT)
psfgen delatom usage
- Stephen M. Dutz (Fri Nov 30 2007 - 15:36:18 CST)
psfgen deleting water molecules
- Jim Phillips (Fri Jun 24 2005 - 15:51:37 CDT)
- shgnwgn_at_eden.rutgers.edu (Mon Jun 13 2005 - 09:37:55 CDT)
psfgen error with alias residue
- Jim Phillips (Mon Jun 09 2003 - 09:33:06 CDT)
- Dr. Daniel James White PhD (Mon Jun 09 2003 - 08:48:32 CDT)
psfgen error: MOLECULE DESTROYED BY FATAL ERROR
- Michel Espinoza-Fonseca (Tue Nov 22 2005 - 18:12:31 CST)
- Michel Espinoza-Fonseca (Tue Nov 22 2005 - 16:47:42 CST)
- Sergio Anis (Tue Nov 22 2005 - 15:58:42 CST)
- Ana Celia Araujo Vila Verde (Tue Nov 22 2005 - 13:13:15 CST)
psfgen failure
- Leyla Celik (Mon Mar 14 2005 - 04:13:13 CST)
- Leyla Celik (Mon Mar 14 2005 - 02:17:17 CST)
psfgen for lipid
- Ting Wang (Thu May 11 2006 - 15:09:07 CDT)
psfgen for protein-RNA complex
- Schreiner Eduard (Tue Mar 02 2010 - 11:17:42 CST)
- YangMingjun (Tue Mar 02 2010 - 10:50:13 CST)
psfgen generates 0 atom .psf file
- JC Gumbart (Fri Feb 12 2010 - 22:58:35 CST)
- Axel Kohlmeyer (Fri Feb 12 2010 - 22:52:25 CST)
- Ronald Salesky (Fri Feb 12 2010 - 19:41:10 CST)
PSFGEN NAD spilts up in 3
- Per Jr. Greisen (Tue May 02 2006 - 10:42:29 CDT)
psfgen or autopsf
- Axel Kohlmeyer (Sun Dec 26 2010 - 09:25:08 CST)
- leila karami (Sun Dec 26 2010 - 08:11:34 CST)
psfgen plugin
- John Stone (Wed Jun 02 2010 - 12:58:54 CDT)
- sriteja mantha (Wed Jun 02 2010 - 05:23:51 CDT)
psfgen problem
- Rudra Banerjee (Thu Sep 18 2008 - 21:48:08 CDT)
- L. Michel Espinoza-Fonseca (Thu Sep 18 2008 - 10:13:55 CDT)
- Rudra Banerjee (Thu Sep 18 2008 - 09:34:14 CDT)
- Peter Freddolino (Thu Sep 18 2008 - 07:18:15 CDT)
- Rudra Banerjee (Thu Sep 18 2008 - 01:45:55 CDT)
- Morad Alawneh (Wed Jan 04 2006 - 17:34:46 CST)
- Brian Bennion (Fri Oct 08 2004 - 21:58:07 CDT)
- mdcooper (Fri Oct 08 2004 - 15:54:58 CDT)
PSFGEN problem with URA residues
- Peter Freddolino (Mon Oct 20 2008 - 09:04:03 CDT)
- Anirban Ghosh (Mon Oct 20 2008 - 08:30:49 CDT)
- Peter Freddolino (Mon Oct 20 2008 - 06:59:42 CDT)
- Anirban Ghosh (Mon Oct 20 2008 - 06:27:06 CDT)
psfgen problems?
- Charles McCallum (Tue Aug 22 2006 - 12:41:51 CDT)
- Shenoy, Sukesh (Mon Aug 21 2006 - 17:41:52 CDT)
psfgen probs
- Peter Freddolino (Tue Aug 22 2006 - 10:12:45 CDT)
- Shenoy, Sukesh (Tue Aug 22 2006 - 10:03:41 CDT)
psfgen question
- Brian Bennion (Thu Mar 25 2004 - 11:42:45 CST)
- li (Thu Mar 25 2004 - 03:48:27 CST)
psfgen script for VMD 1.8.7
- Mark Cunningham (Tue Feb 08 2011 - 20:48:50 CST)
- Marc Charendoff (Tue Feb 08 2011 - 12:26:25 CST)
psfgen tyrosine anion-Fe bond
- Francesco Pietra (Sun Apr 01 2012 - 09:53:13 CDT)
PSFGEN vs. VMD
- nordgren_at_sas.upenn.edu (Wed May 11 2005 - 05:01:37 CDT)
psfgen vs. x-plor
- Axel Kohlmeyer (Wed Nov 09 2005 - 02:12:36 CST)
- Craig Maloney (Tue Nov 08 2005 - 20:01:52 CST)
psfgen woes...
- Peter Freddolino (Mon Aug 28 2006 - 16:11:11 CDT)
- Pavan Ghatty (Mon Aug 28 2006 - 16:00:42 CDT)
psfgen: auto none not working
- Peter Freddolino (Mon Jun 15 2009 - 06:50:46 CDT)
- Ruchi Sachdeva (Mon Jun 15 2009 - 03:57:25 CDT)
psfgen: error processing bonds
- Edward Lyman (Sun May 01 2011 - 16:14:33 CDT)
- Axel Kohlmeyer (Sun May 01 2011 - 16:20:45 CDT)
- Axel Kohlmeyer (Sat Apr 30 2011 - 10:45:17 CDT)
- Edward Lyman (Sat Apr 30 2011 - 10:39:47 CDT)
- Edward Lyman (Sat Apr 30 2011 - 10:16:16 CDT)
- Axel Kohlmeyer (Fri Apr 29 2011 - 15:11:54 CDT)
- Edward Lyman (Fri Apr 29 2011 - 14:30:53 CDT)
- Axel Kohlmeyer (Fri Apr 29 2011 - 08:40:55 CDT)
- Jim Phillips (Fri Apr 29 2011 - 08:12:56 CDT)
- Edward Lyman (Fri Apr 29 2011 - 08:00:52 CDT)
- Jim Phillips (Tue Apr 26 2011 - 14:21:01 CDT)
- Jim Phillips (Tue Apr 26 2011 - 11:43:56 CDT)
- John Stone (Tue Apr 26 2011 - 10:53:05 CDT)
- Edward Lyman (Fri Apr 22 2011 - 10:03:30 CDT)
psfgen: how to place patches to end of residue definition in pdb file?
- Sebastian Stolzenberg (Tue Jun 09 2009 - 11:33:41 CDT)
psfgen: last CTER does not work
- Peter Freddolino (Thu Jun 15 2006 - 14:35:02 CDT)
- Morad Alawneh (Thu Jun 15 2006 - 14:30:14 CDT)
PSFGEN::: ERROR: failed on end of segment
- Dibyadeep Paul (Wed Feb 13 2008 - 03:38:14 CST)
PSFGEN:buiding an uncharged protein
- luca.dallaglio2_at_studio.unibo.it (Tue Jun 12 2007 - 02:55:14 CDT)
ptraj
- John Stone (Tue Sep 27 2005 - 09:57:34 CDT)
- Michel Espinoza-Fonseca (Tue Sep 27 2005 - 06:24:50 CDT)
public VMD cvs server
- John Stone (Fri Mar 04 2011 - 09:13:10 CST)
Pucker parameters
- John Stone (Tue Jul 12 2011 - 12:53:39 CDT)
- Payne, Christy (Thu Jul 07 2011 - 14:35:18 CDT)
purple bacteria and psfgen
- John Stone (Wed Jul 16 2008 - 02:50:49 CDT)
- brosbam_at_berkeley.edu (Tue Jul 15 2008 - 12:37:30 CDT)
puts format
- Jerome Henin (Wed Sep 13 2006 - 18:01:21 CDT)
- Axel Kohlmeyer (Wed Sep 13 2006 - 16:43:31 CDT)
- John Stone (Wed Sep 13 2006 - 16:27:34 CDT)
- Alexandr Isayev (Wed Sep 13 2006 - 16:18:04 CDT)
- lily jin (Wed Sep 13 2006 - 15:22:27 CDT)
putting a set of selections in a list or an array
- Axel Kohlmeyer (Sun Jan 11 2009 - 13:53:41 CST)
- A D (Sun Jan 11 2009 - 12:14:08 CST)
putting Lipid layers around a protein
- Florian Haberl (Tue Nov 16 2004 - 03:32:41 CST)
- li (Mon Nov 15 2004 - 00:42:15 CST)
- Nitin Bhardwaj (Sun Nov 14 2004 - 19:20:22 CST)
puzzling psfgen problem with deleted atoms coming back
- Irene Newhouse (Thu Jul 26 2007 - 17:40:01 CDT)
- Irene Newhouse (Fri Jul 13 2007 - 16:47:05 CDT)
puzzling writepdb error
- Chang, Christopher (Wed Oct 12 2005 - 17:58:33 CDT)
- John Stone (Wed Oct 12 2005 - 16:58:24 CDT)
- Samuel Flores (Wed Oct 12 2005 - 16:12:26 CDT)
Py_atomsel.C: invalid conversion
- Chang, Christopher (Tue Sep 02 2008 - 13:59:12 CDT)
- John Stone (Fri Aug 29 2008 - 13:05:06 CDT)
- Chang, Christopher (Fri Aug 29 2008 - 13:01:04 CDT)
Pyhton Mode
- Axel Kohlmeyer (Thu Aug 20 2009 - 08:10:51 CDT)
- Peyman Yamin (Thu Aug 20 2009 - 04:49:33 CDT)
python
- John Stone (Mon Nov 13 2006 - 10:35:02 CST)
- alexandra.marques_at_fc.up.pt (Sun Nov 12 2006 - 11:23:39 CST)
- John Stone (Thu Apr 13 2006 - 23:01:06 CDT)
- ziemys_at_ecr6.ohio-state.edu (Thu Apr 13 2006 - 08:15:01 CDT)
- Irina Tuszynska (Mon Nov 21 2005 - 11:37:17 CST)
python - writes frames to pdb files
- John Stone (Tue Jun 13 2006 - 15:51:24 CDT)
- Per Jr. Greisen (Sat Jun 10 2006 - 06:19:11 CDT)
python 2.3
- John Stone (Tue Apr 20 2004 - 15:02:25 CDT)
- Ramon Crehuet (Tue Apr 20 2004 - 11:39:32 CDT)
python and C++ extensions
- Jim Phillips (Fri Jul 27 2007 - 16:56:00 CDT)
- John Stone (Thu Jul 26 2007 - 16:40:47 CDT)
- karan uppal (Thu Jul 26 2007 - 11:19:06 CDT)
Python and numpy
- Florian Haberl (Tue Jan 11 2005 - 07:31:37 CST)
python and vmd
- Axel Kohlmeyer (Wed Jul 15 2009 - 07:46:20 CDT)
- Jorgen Simonsen (Wed Jul 15 2009 - 04:23:12 CDT)
python callback!!!!
- Anand Kaushal (Wed Jul 28 2004 - 16:19:15 CDT)
python callbacks
- John Stone (Tue Aug 31 2004 - 15:26:21 CDT)
- Travis DePuy (Mon Aug 23 2004 - 16:56:25 CDT)
- Justin Gullingsrud (Mon Feb 10 2003 - 10:47:37 CST)
- Lars Bruno Hansen (Mon Feb 10 2003 - 04:03:58 CST)
Python callbacks in VMD
- John Stone (Wed Aug 20 2008 - 22:59:53 CDT)
- James E. Magee (Wed Aug 20 2008 - 06:41:52 CDT)
python can't find math module
- Craig Maloney (Tue Nov 01 2005 - 15:50:10 CST)
python create graphics molecule
- Don Havelberg (Tue Mar 26 2002 - 17:19:02 CST)
- Don Havelberg (Tue Mar 26 2002 - 17:16:00 CST)
- Justin Gullingsrud (Tue Mar 26 2002 - 10:15:03 CST)
- Don Havelberg (Tue Mar 26 2002 - 07:10:25 CST)
Python development
- Vasiliy S. Znamenskiy (Wed Jan 31 2007 - 07:15:13 CST)
- Mikolai Fajer (Tue Jan 30 2007 - 21:27:05 CST)
- Dr. Seth Olsen (Tue Jan 30 2007 - 19:51:12 CST)
- John Stone (Tue Jan 30 2007 - 16:49:23 CST)
- Mikolai Fajer (Mon Jan 29 2007 - 16:39:00 CST)
python disabled
- Justin Gullingsrud (Wed Jan 30 2002 - 14:51:03 CST)
- Alexey Kozlenkov (Wed Jan 30 2002 - 14:53:54 CST)
python disabled (still?)
- John Stone (Sat May 22 2004 - 00:31:39 CDT)
- Travis DePuy (Tue May 18 2004 - 10:49:17 CDT)
- Travis DePuy (Tue May 18 2004 - 10:49:17 CDT)
Python error
- John Stone (Mon Sep 27 2004 - 13:49:25 CDT)
- Vlad Cojocaru (Mon Sep 27 2004 - 12:33:47 CDT)
python error?
- Albert (Mon Apr 02 2012 - 14:17:08 CDT)
- Axel Kohlmeyer (Mon Apr 02 2012 - 13:48:02 CDT)
- Albert (Mon Apr 02 2012 - 11:28:14 CDT)
Python for OS X
- John Stone (Tue Jul 29 2008 - 14:09:57 CDT)
- Axel Kohlmeyer (Sat Jul 26 2008 - 12:56:18 CDT)
- Hans Martin Senn (Fri Jul 25 2008 - 10:19:38 CDT)
Python interface (was: Accessing TCL through Python interface)
- Justin Gullingsrud (Fri May 20 2005 - 14:30:06 CDT)
- Daniel B. Faken (Fri May 20 2005 - 08:34:00 CDT)
Python libraries for vmd: _tkinter was not enabled in Modules/Setup
- Cojocaru,Vlad (Tue Dec 06 2005 - 14:45:55 CST)
Python libs posted for VMD 1.8.4 users...
- John Stone (Wed Apr 19 2006 - 20:33:15 CDT)
python loop
- Aitor Gonzalez (Fri Mar 16 2001 - 12:39:34 CST)
- Justin Gullingsrud (Fri Mar 16 2001 - 12:23:18 CST)
- Aitor Gonzalez (Fri Mar 16 2001 - 04:40:38 CST)
python math library
- John Stone (Sun Apr 16 2006 - 22:08:42 CDT)
- Justin Gullingsrud (Sun Apr 16 2006 - 21:32:48 CDT)
- John Stone (Sun Apr 16 2006 - 00:34:52 CDT)
- John Stone (Wed Apr 12 2006 - 22:09:14 CDT)
- Grischa Meyer (Wed Apr 12 2006 - 21:57:19 CDT)
- John Stone (Wed Apr 12 2006 - 21:25:37 CDT)
- Justin Gullingsrud (Wed Apr 12 2006 - 19:02:22 CDT)
- Grischa Meyer (Tue Apr 11 2006 - 23:50:22 CDT)
Python Module
- Harry Bullen (Fri Jun 08 2007 - 11:03:39 CDT)
- John Stone (Fri Jun 08 2007 - 10:38:01 CDT)
- Harry Bullen (Fri Jun 08 2007 - 08:40:36 CDT)
- Justin Gullingsrud (Fri Jun 08 2007 - 09:43:50 CDT)
- Axel Kohlmeyer (Fri Jun 08 2007 - 08:35:04 CDT)
- Axel Kohlmeyer (Thu Jun 07 2007 - 17:50:14 CDT)
- Harry Bullen (Thu Jun 07 2007 - 13:00:41 CDT)
python Numeric library problem
- John Stone (Fri Sep 28 2007 - 14:35:25 CDT)
- Geoff Wood (Mon Sep 24 2007 - 15:05:54 CDT)
- John Stone (Wed Apr 05 2006 - 20:21:52 CDT)
- Sacerdoti, Federico (Wed Apr 05 2006 - 20:16:44 CDT)
- John Stone (Tue Apr 04 2006 - 16:00:09 CDT)
- Sacerdoti, Federico (Tue Apr 04 2006 - 11:11:16 CDT)
Python on Intel Mac?
- John Stone (Fri Oct 13 2006 - 14:12:10 CDT)
- Michael Lerner (Thu Oct 12 2006 - 17:15:53 CDT)
- John Stone (Thu Oct 12 2006 - 15:37:31 CDT)
- Michael Lerner (Thu Oct 12 2006 - 13:25:01 CDT)
python or Tcl/Tk
- John Stone (Fri Jan 21 2005 - 17:27:24 CST)
- Guanglei Cui (Fri Jan 21 2005 - 12:48:12 CST)
- Guanglei Cui (Fri Jan 21 2005 - 11:03:32 CST)
python pro.align()
- John Stone (Thu Mar 29 2007 - 16:22:23 CDT)
- Per Jr. Greisen (Thu Mar 29 2007 - 12:27:21 CDT)
python question
- Justin Gullingsrud (Sat Aug 23 2003 - 21:34:10 CDT)
- Alfredo Valles (Sat Aug 23 2003 - 09:41:37 CDT)
python question 2
- Justin Gullingsrud (Mon Aug 25 2003 - 10:09:54 CDT)
- Alfredo Valles (Mon Aug 25 2003 - 04:02:10 CDT)
python script of atomsel expression
- Justin Gullingsrud (Tue Feb 19 2002 - 10:47:58 CST)
- Fei Xu (Tue Feb 19 2002 - 09:42:25 CST)
python support and pipes in vmd
- Justin Gullingsrud (Tue Sep 30 2003 - 16:48:47 CDT)
- John Stone (Tue Sep 30 2003 - 16:05:49 CDT)
- John R. Kitchin (Tue Sep 30 2003 - 13:52:00 CDT)
python vmd interface
- Justin Gullingsrud (Thu Mar 29 2001 - 11:53:11 CST)
- Aitor Gonzalez (Thu Mar 29 2001 - 08:57:32 CST)
Python's future in VMD
- Warren L. DeLano (Tue Sep 30 2003 - 20:38:19 CDT)
- John Stone (Tue Sep 30 2003 - 12:30:15 CDT)
- Andrew Dalke (Tue Sep 30 2003 - 12:19:46 CDT)
- John Stone (Tue Sep 30 2003 - 10:14:34 CDT)
- Alan Wilter Sousa da Silva (Tue Sep 30 2003 - 07:48:28 CDT)
- Alfredo Valles (Tue Sep 30 2003 - 08:01:05 CDT)
- Patrick Ladam (Tue Sep 30 2003 - 05:58:23 CDT)
Python, Numeric, and Mac OS X problem
- Jacinto S. (Fri Aug 26 2005 - 13:32:50 CDT)
- John Stone (Fri Mar 18 2005 - 12:05:51 CST)
- Florian Haberl (Mon Mar 14 2005 - 06:47:10 CST)
- Eric Brown (Mon Mar 14 2005 - 06:14:29 CST)
- Eric Brown (Mon Mar 14 2005 - 05:18:08 CST)
Python, numpy, and so on ....
- John Stone (Tue Mar 29 2005 - 13:54:50 CST)
- Nuno R. L. Ferreira (Tue Mar 29 2005 - 05:42:23 CST)
python2.3 and vmd
- Lars Bruno Hansen (Fri Oct 29 2004 - 02:05:38 CDT)
- Justin Gullingsrud (Fri Oct 29 2004 - 00:23:29 CDT)
- Lars Bruno Hansen (Thu Oct 28 2004 - 05:04:06 CDT)
- hinsen_at_llb.saclay.cea.fr (Wed Oct 27 2004 - 11:43:43 CDT)
- hinsen_at_llb.saclay.cea.fr (Wed Oct 27 2004 - 11:36:35 CDT)
- hinsen_at_llb.saclay.cea.fr (Wed Oct 27 2004 - 11:17:40 CDT)
- Gustavo Mercier (Wed Oct 27 2004 - 07:59:54 CDT)
- Justin Gullingsrud (Tue Oct 26 2004 - 18:38:05 CDT)
- John Stone (Tue Oct 26 2004 - 13:25:45 CDT)
- John Stone (Tue Oct 26 2004 - 13:18:13 CDT)
- John Stone (Tue Oct 26 2004 - 12:59:48 CDT)
- Warren DeLano (Tue Oct 26 2004 - 12:25:52 CDT)
- hinsen_at_llb.saclay.cea.fr (Tue Oct 26 2004 - 11:07:07 CDT)
- John Stone (Mon Oct 25 2004 - 13:37:31 CDT)
- John Stone (Mon Oct 25 2004 - 13:28:44 CDT)
- Jim Nettles (Sun Oct 24 2004 - 08:21:11 CDT)
- hinsen_at_llb.saclay.cea.fr (Sun Oct 24 2004 - 03:47:15 CDT)
- John Stone (Fri Oct 22 2004 - 15:40:26 CDT)
- John Stone (Fri Oct 22 2004 - 13:49:56 CDT)
- Lars Bruno Hansen (Fri Oct 22 2004 - 13:40:27 CDT)
- John Stone (Fri Oct 22 2004 - 10:43:56 CDT)
- Lars Bruno Hansen (Fri Oct 22 2004 - 03:05:16 CDT)
- John Stone (Thu Oct 21 2004 - 10:56:29 CDT)
- Lars Bruno Hansen (Thu Oct 21 2004 - 08:41:42 CDT)
python: cannot find library
- Justin Gullingsrud (Thu Aug 07 2003 - 09:40:55 CDT)
- barrett (Thu Aug 07 2003 - 03:28:12 CDT)
- Justin Gullingsrud (Wed Aug 06 2003 - 11:18:20 CDT)
- Justin Gullingsrud (Wed Aug 06 2003 - 11:16:12 CDT)
- John Stone (Wed Aug 06 2003 - 11:02:24 CDT)
- barrett (Wed Aug 06 2003 - 04:53:06 CDT)
python: error importing packages
- John Stone (Tue Apr 08 2003 - 10:56:41 CDT)
- Lars Bruno Hansen (Wed Apr 02 2003 - 06:22:56 CST)
python: it doesnt work
- Cojocaru,Vlad (Tue Dec 06 2005 - 16:34:13 CST)
python: packages not found
- Justin Gullingsrud (Tue Feb 04 2003 - 10:50:35 CST)
- Oliver Beckstein (Tue Feb 04 2003 - 09:45:46 CST)
python: packages not found also...
- barrett (Mon Sep 08 2003 - 05:44:12 CDT)
- Patrick Ladam (Tue Sep 02 2003 - 04:44:33 CDT)
python: packages not found also...(FIXED, thanks John)
- Patrick Ladam (Tue Sep 09 2003 - 05:14:14 CDT)
python: packages not found also...(repost)
- John Stone (Tue Sep 09 2003 - 02:10:39 CDT)
- Patrick Ladam (Thu Sep 04 2003 - 07:28:17 CDT)
Python: radius always 1 for cylinder and cones
- Justin Gullingsrud (Wed Feb 06 2002 - 17:03:55 CST)
- Fredrik Sjunnesson (Wed Feb 06 2002 - 16:04:13 CST)
python: readline support
- Oliver Beckstein (Tue Feb 04 2003 - 09:47:13 CST)
pytjhon
- John Stone (Tue Jan 24 2006 - 11:25:06 CST)
- John M. Robinson (Mon Jan 23 2006 - 14:06:12 CST)
q4md-forcefieldtools.org announcement
- FyD (Fri Nov 25 2011 - 07:33:39 CST)
Q: Compiling VMD on IRIX 6.5
- John Stone (Mon Jul 01 2002 - 09:27:10 CDT)
- ran friedman (Mon Jul 01 2002 - 09:07:30 CDT)
Q: MO visualisation
- Christoph Hagedorn (Thu Dec 14 2000 - 11:35:39 CST)
Q:selection of atoms on the surface of a molecule
- Mgr. Lubos Vrbka (Wed Mar 01 2006 - 00:44:11 CST)
- John Stone (Tue Feb 28 2006 - 17:35:00 CST)
- kovzany_at_go.com (Tue Feb 28 2006 - 17:22:13 CST)
QM Geometry optimization
- Axel Kohlmeyer (Wed Dec 17 2008 - 13:53:09 CST)
- bo baker (Wed Dec 17 2008 - 12:30:08 CST)
- Axel Kohlmeyer (Wed Dec 17 2008 - 09:23:33 CST)
- Peter Freddolino (Wed Dec 17 2008 - 08:57:05 CST)
- bo baker (Tue Dec 16 2008 - 23:59:49 CST)
QM_plugin_force_constants
- Karol Kaszuba (Mon Dec 03 2007 - 06:41:24 CST)
qpt_conv command of Hole is interactive, how to automate it for multiple frames?
- maria goranovic (Tue Jul 12 2011 - 14:22:35 CDT)
- John Stone (Tue Jul 12 2011 - 13:08:13 CDT)
- maria goranovic (Thu Jul 07 2011 - 05:21:00 CDT)
- maria goranovic (Tue Jul 05 2011 - 10:05:55 CDT)
QR factorization for structural alignment
- Leonardo Trabuco (Fri Jul 11 2008 - 01:51:51 CDT)
- Dong Xu (Thu Jul 10 2008 - 17:30:39 CDT)
- Dong Xu (Sat Jul 05 2008 - 17:06:29 CDT)
qsub (torque/maui) and vmd
- Gordon Wells (Tue Sep 05 2006 - 02:09:09 CDT)
- Leonardo Trabuco (Mon Sep 04 2006 - 22:47:19 CDT)
- John Stone (Mon Sep 04 2006 - 22:38:40 CDT)
- Axel Kohlmeyer (Mon Sep 04 2006 - 14:00:38 CDT)
- Gordon Wells (Mon Sep 04 2006 - 13:01:42 CDT)
- Axel Kohlmeyer (Mon Sep 04 2006 - 11:18:05 CDT)
- Gordon Wells (Mon Sep 04 2006 - 09:31:33 CDT)
- Neelanjana Sengupta (Mon Sep 04 2006 - 09:02:16 CDT)
- Gordon Wells (Mon Sep 04 2006 - 08:25:54 CDT)
Qtight=22?= selection
- ziemys_at_ecr6.ohio-state.edu (Mon Jun 05 2006 - 15:36:37 CDT)
Quadro 750 XGL problem
- John Stone (Tue Sep 21 2004 - 09:56:16 CDT)
- John Stone (Mon Sep 20 2004 - 09:44:11 CDT)
- Sylvain EDALEINE (Mon Sep 20 2004 - 09:38:22 CDT)
Quadro FX1800 , Stereo and VMD
- Jacob Story (Fri Jul 08 2011 - 13:35:44 CDT)
- Jacob Story (Fri Jul 08 2011 - 13:04:21 CDT)
- Vlad Cojocaru (Fri Jul 08 2011 - 12:00:49 CDT)
- Vlad Cojocaru (Fri Jul 08 2011 - 12:00:23 CDT)
- Vlad Cojocaru (Fri Jul 08 2011 - 11:49:09 CDT)
- Jacob Story (Fri Jul 08 2011 - 11:23:30 CDT)
- Vlad Cojocaru (Fri Jul 08 2011 - 11:26:17 CDT)
- John Stone (Fri Jul 08 2011 - 11:38:42 CDT)
- John Stone (Fri Jul 08 2011 - 10:41:12 CDT)
- Vlad Cojocaru (Fri Jul 08 2011 - 09:25:33 CDT)
quality rendering
- Eduard Schreiner (Thu Jul 14 2005 - 01:46:46 CDT)
- Herbert Georg (Wed Jul 13 2005 - 15:27:44 CDT)
Quantitative meaning of volmap isosurface
- John Stone (Wed Feb 01 2012 - 14:19:18 CST)
- Axel Kohlmeyer (Tue Jan 31 2012 - 07:25:02 CST)
- Benjamin Hall (Tue Jan 31 2012 - 07:32:50 CST)
- Ben Hall (Tue Jan 31 2012 - 06:01:20 CST)
Queries on making polymer
- John Stone (Fri Jul 07 2006 - 13:37:40 CDT)
- Naser, Md Abu (Thu Jul 06 2006 - 14:42:49 CDT)
Querry
- dipti lele (Tue Oct 21 2008 - 08:42:18 CDT)
Query
- John Stone (Tue Jul 29 2008 - 13:13:24 CDT)
- Kaur, Tarandeep (Tue Jul 29 2008 - 07:55:49 CDT)
- Wei Chen (Thu Jun 09 2005 - 13:54:59 CDT)
- Tamal Banerjee (Thu Jun 09 2005 - 01:34:58 CDT)
query about "ViewChangeRender" plugin
- harish vashisth (Tue Oct 11 2011 - 10:42:09 CDT)
- harish vashisth (Mon Oct 10 2011 - 17:04:45 CDT)
Query Fields
- John Stone (Wed Feb 01 2012 - 13:58:00 CST)
- Joseph Bylund (Tue Jan 31 2012 - 08:32:40 CST)
query regarding membrane building
- kalyan chaitanya (Sat Sep 29 2007 - 22:58:45 CDT)
- L. Michel Espinoza-Fonseca (Sat Sep 29 2007 - 14:05:01 CDT)
- kalyan chaitanya (Sat Sep 29 2007 - 09:41:14 CDT)
Query regarding RMSD calculcation
- John Stone (Tue Oct 12 2010 - 15:25:35 CDT)
- hirdesh kumar (Tue Oct 05 2010 - 00:50:32 CDT)
question
- John Stone (Mon Nov 15 1999 - 09:16:50 CST)
- Deepak Singh (Sun Nov 14 1999 - 17:00:26 CST)
- Axel Kohlmeyer (Thu Nov 20 2008 - 11:55:59 CST)
- Wojciech Rajchel (Thu Nov 20 2008 - 11:08:31 CST)
- Stéphane Teletchéa (Fri Apr 21 2006 - 03:54:28 CDT)
- Maria Konstantakaki (Thu Apr 20 2006 - 10:38:20 CDT)
- John Stone (Tue Jul 15 2003 - 17:08:58 CDT)
- Ioana Cozmuta (Tue Jul 15 2003 - 16:58:45 CDT)
- John Stone (Tue Jul 15 2003 - 16:33:13 CDT)
- Ioana Cozmuta (Tue Jul 15 2003 - 16:22:42 CDT)
question about "measure dihed" with COM points
- J T (Wed Feb 25 2009 - 14:43:01 CST)
- Hwankyu Lee (Wed Feb 25 2009 - 14:55:39 CST)
- Lee, Hwan Kyu (NIH/NHLBI) [E] (Wed Feb 25 2009 - 13:35:07 CST)
- Lee, Hwan Kyu (NIH/NHLBI) [E] (Wed Feb 25 2009 - 12:55:38 CST)
- J T (Tue Feb 24 2009 - 21:37:21 CST)
- Axel Kohlmeyer (Tue Feb 24 2009 - 19:51:15 CST)
- Lee, Hwan Kyu (NIH/NHLBI) [E] (Tue Feb 24 2009 - 19:09:27 CST)
Question about "orient" script
- John Stone (Tue Jun 21 2011 - 13:15:44 CDT)
- Masaki UNNO (Thu Jun 16 2011 - 04:33:51 CDT)
question about "then: then/endif not found" in the start VMD.
- John Stone (Fri Dec 16 2005 - 13:17:28 CST)
- Cheng Luo, Ph.D. (Fri Dec 16 2005 - 11:52:18 CST)
question about 'measure bond'
- Axel Kohlmeyer (Fri Feb 01 2008 - 09:46:30 CST)
- MW Van der Kamp, School of Chemistry (Fri Feb 01 2008 - 09:21:20 CST)
Question about .vmdsensors configuration
- John Stone (Thu Aug 11 2005 - 09:48:32 CDT)
- leepersonpp (Thu Aug 11 2005 - 05:47:19 CDT)
question about atomselect and periodic condition
- Axel Kohlmeyer (Fri Jul 24 2009 - 09:17:13 CDT)
- Linchen Gong (Fri Jul 24 2009 - 05:44:41 CDT)
Question about autopsf
- Peter Freddolino (Tue Jan 22 2008 - 20:00:40 CST)
- Lucas Fernández Seivane (Tue Jan 22 2008 - 16:07:50 CST)
- Lucas Fernández Seivane (Tue Jan 22 2008 - 13:39:06 CST)
- Peter Freddolino (Tue Jan 22 2008 - 14:26:25 CST)
question about Ca-dist.tcl
- dhacademic (Wed Sep 01 2010 - 10:14:24 CDT)
Question about dihedral angles in VMD.
- Justin Gullingsrud (Wed Aug 07 2002 - 15:29:38 CDT)
- Joe Huang (Wed Aug 07 2002 - 15:01:06 CDT)
question about electrostatic map visualizing
- Cristina (Tue Oct 26 2004 - 13:00:13 CDT)
- John Stone (Mon Oct 25 2004 - 13:27:12 CDT)
- Cristina (Sat Sep 04 2004 - 11:02:47 CDT)
question about electrostatic potential maps
- Jeffrey A Tibbitt (Thu Mar 02 2006 - 12:02:01 CST)
- John Stone (Wed Mar 01 2006 - 16:50:00 CST)
- John Stone (Wed Mar 01 2006 - 09:50:47 CST)
- ivana adamovic (Wed Mar 01 2006 - 09:43:15 CST)
- ivana adamovic (Tue Feb 28 2006 - 09:48:47 CST)
- ivana adamovic (Tue Feb 28 2006 - 09:47:44 CST)
- Vlad Cojocaru (Tue Feb 28 2006 - 04:12:02 CST)
- John Stone (Mon Feb 27 2006 - 16:06:56 CST)
- ivana adamovic (Mon Feb 27 2006 - 12:19:48 CST)
Question about eval
- Pavan Ghatty (Tue Jul 26 2011 - 11:14:15 CDT)
- John Stone (Tue Jul 26 2011 - 11:40:45 CDT)
- Pavan Ghatty (Tue Jul 26 2011 - 08:45:56 CDT)
- Axel Kohlmeyer (Mon Jul 25 2011 - 14:33:37 CDT)
- Pavan Ghatty (Mon Jul 25 2011 - 13:51:53 CDT)
Question about geometrical figures
- Felix Rodrigues Gulias (Fri Feb 01 2008 - 11:03:42 CST)
- Axel Kohlmeyer (Fri Feb 01 2008 - 11:28:35 CST)
question about gofr
- Axel Kohlmeyer (Sat Mar 17 2007 - 15:48:44 CDT)
- lanhua (Sat Mar 17 2007 - 14:30:31 CDT)
Question about Gromacs box size in VMD.....
- Olaf Lenz (Thu Jan 03 2008 - 08:38:47 CST)
- Axel Kohlmeyer (Thu Jan 03 2008 - 08:24:07 CST)
- Sergio Garay (Thu Jan 03 2008 - 07:27:37 CST)
Question about introducing variables in "mol selection..."
- Axel Kohlmeyer (Fri May 22 2009 - 11:34:03 CDT)
- Peter Freddolino (Fri May 22 2009 - 10:18:59 CDT)
- Alberto Sergio Garay (Fri May 22 2009 - 10:06:54 CDT)
question about ionization
- John Stone (Wed Nov 07 2007 - 20:17:54 CST)
- Anatoliy (Wed Nov 07 2007 - 12:10:12 CST)
Question about Keyboaerd events send from other PC
- John Stone (Thu Nov 05 2009 - 08:46:50 CST)
- Christian Wohlschlager (Thu Nov 05 2009 - 02:29:36 CST)
question about ligand volmap
- Jordi Cohen (Wed Jun 27 2007 - 11:29:31 CDT)
- Rachel (Tue Jun 26 2007 - 10:56:34 CDT)
question about making movies
- John Stone (Wed May 16 2007 - 14:44:17 CDT)
- Axel Kohlmeyer (Wed May 16 2007 - 13:39:13 CDT)
- Kailee (Wed May 16 2007 - 11:49:50 CDT)
question about measure contacts
- Justin Gullingsrud (Thu Aug 02 2007 - 15:16:01 CDT)
- Rachel (Thu Aug 02 2007 - 12:31:33 CDT)
- Rachel (Tue Jul 31 2007 - 08:42:57 CDT)
Question about measure gofr
- Jennie Thomas (Fri Oct 06 2006 - 15:36:16 CDT)
- Axel Kohlmeyer (Fri Oct 06 2006 - 12:54:58 CDT)
- Jennie Thomas (Fri Oct 06 2006 - 12:02:43 CDT)
Question about overlaying structures
- John Stone (Tue Mar 27 2007 - 13:06:33 CDT)
- Kara Di Giorgio (Tue Mar 27 2007 - 12:30:06 CDT)
- John Stone (Thu Mar 15 2007 - 22:16:12 CDT)
- Kara Di Giorgio (Thu Mar 15 2007 - 21:16:26 CDT)
question about periodicity
- John Stone (Tue Apr 22 2003 - 13:57:56 CDT)
- Ioana Cozmuta (Mon Apr 21 2003 - 13:38:49 CDT)
Question about PSF generation
- Axel Kohlmeyer (Sun Sep 20 2009 - 13:34:12 CDT)
- Schreiner Eduard (Sun Sep 20 2009 - 12:04:52 CDT)
- NAMITA BHADRA (Sun Sep 20 2009 - 08:50:18 CDT)
- John Stone (Thu Sep 10 2009 - 11:04:05 CDT)
- NAMITA BHADRA (Tue Sep 08 2009 - 23:01:53 CDT)
question about psfgen
- Peter Freddolino (Thu Apr 06 2006 - 15:40:05 CDT)
- Margaret Shun Cheung (Thu Apr 06 2006 - 14:50:58 CDT)
- Margaret Shun Cheung (Thu Apr 06 2006 - 14:11:54 CDT)
- Margaret Shun Cheung (Thu Apr 06 2006 - 13:45:26 CDT)
- Peter Freddolino (Thu Apr 06 2006 - 13:34:49 CDT)
- Margaret Shun Cheung (Thu Apr 06 2006 - 13:18:34 CDT)
- Marcos Sotomayor (Thu Apr 06 2006 - 13:28:47 CDT)
- Marcos Sotomayor (Thu Apr 06 2006 - 00:02:47 CDT)
- John Stone (Wed Apr 05 2006 - 22:57:32 CDT)
- Margaret Shun Cheung (Tue Apr 04 2006 - 16:23:25 CDT)
Question about Python and Mac osx
- John Stone (Sat Jan 10 2004 - 17:32:00 CST)
- simon stockes (Thu Jan 08 2004 - 17:06:00 CST)
Question about RDF of VMD
- Axel Kohlmeyer (Sat Feb 24 2007 - 21:25:14 CST)
- Jianhui Tian (Sat Feb 24 2007 - 20:33:13 CST)
Question about rendering across multiple frames
- John Stone (Mon Jun 11 2007 - 15:33:26 CDT)
- Prashanth Athri (Mon Jun 11 2007 - 13:51:29 CDT)
question about rendering images
- John Stone (Wed Sep 22 2004 - 17:07:11 CDT)
- cpao_at_Princeton.EDU (Wed Sep 22 2004 - 16:54:38 CDT)
Question about RMSD calculator
- Dan Wright (Tue Dec 12 2006 - 16:20:58 CST)
- John Stone (Tue Dec 12 2006 - 13:50:47 CST)
- Kara Di Giorgio (Tue Dec 12 2006 - 13:16:32 CST)
question about rotations
- John Stone (Fri Feb 09 2007 - 18:02:33 CST)
- Adrian Roitberg (Fri Feb 09 2007 - 08:33:34 CST)
Question about running tcl/tk script without graphic interface (vmd option -dispdev none ...)
- Axel Kohlmeyer (Fri Oct 16 2009 - 18:25:07 CDT)
- Alberto Sergio Garay (Fri Oct 16 2009 - 17:48:04 CDT)
Question about SASA
- John Stone (Fri Apr 15 2011 - 16:03:05 CDT)
- Sebastian Maximilian Wilhelm (Thu Apr 14 2011 - 10:31:34 CDT)
question about script for drawing dipole moment for helix
- John Stone (Mon Jan 09 2006 - 11:08:54 CST)
- jz7_at_duke.edu (Tue Jan 03 2006 - 17:39:32 CST)
question about selection
- Andrew Dalke (Thu Sep 04 2003 - 18:57:00 CDT)
- Ioana Cozmuta (Thu Sep 04 2003 - 17:10:41 CDT)
question about setting variables in a loop
- Peter Freddolino (Tue Jan 09 2007 - 09:49:21 CST)
- Brian Kidd (Mon Jan 08 2007 - 22:01:12 CST)
question about sscache
- qwang_at_mail.uh.edu (Mon Sep 29 2008 - 11:44:35 CDT)
- John Stone (Mon Sep 29 2008 - 10:03:46 CDT)
- Margaret S. Cheung (Sun Sep 28 2008 - 21:04:56 CDT)
- qwang_at_mail.uh.edu (Sun Sep 28 2008 - 19:33:02 CDT)
- Alexander A. Vakhrushev (Fri Sep 26 2008 - 22:41:50 CDT)
- qwang_at_mail.uh.edu (Fri Sep 26 2008 - 14:00:07 CDT)
Question About Tcl variables
- Axel Kohlmeyer (Wed Aug 16 2006 - 19:36:28 CDT)
- Leonardo Sepulveda Durán (Wed Aug 16 2006 - 16:41:46 CDT)
question about the definition of secondary motiffs
- John Stone (Thu Apr 08 2004 - 16:57:13 CDT)
- weiz (Mon Apr 05 2004 - 19:44:44 CDT)
question about the inorganic builder
- Robert Brunner (Tue Mar 01 2011 - 14:15:25 CST)
- Mao Mao (Tue Mar 01 2011 - 11:30:53 CST)
Question about the Main Menu window display
- Alfredo Quevedo (Wed Oct 15 2008 - 13:31:58 CDT)
- Axel Kohlmeyer (Fri Oct 10 2008 - 14:47:28 CDT)
- Alfredo Quevedo (Fri Oct 10 2008 - 14:15:47 CDT)
Question about trace vmd_frame(molid)
- Axel Kohlmeyer (Fri Aug 15 2008 - 13:55:54 CDT)
- Oren Elrad (Fri Aug 15 2008 - 13:24:25 CDT)
- Axel Kohlmeyer (Fri Aug 15 2008 - 12:12:03 CDT)
- Oren Elrad (Fri Aug 15 2008 - 11:33:02 CDT)
question about using namdenergy.tcl with vmd -dispdev text -e *.tcl
- Margaret.Cheung_at_mail.uh.edu (Fri Jul 25 2008 - 18:41:40 CDT)
- Peter Freddolino (Fri Jul 25 2008 - 17:31:16 CDT)
- Margaret S. Cheung (Fri Jul 25 2008 - 08:38:20 CDT)
Question about using psfgen on protein 4HVP
- Justin Gullingsrud (Tue Oct 26 2004 - 18:46:21 CDT)
- Brian Bennion (Tue Oct 26 2004 - 15:02:51 CDT)
- jin (Tue Oct 26 2004 - 11:39:16 CDT)
Question about vdW-area
- Sebastian Maximilian Wilhelm (Wed Mar 16 2011 - 12:40:43 CDT)
question about visualization
- John Stone (Tue Aug 29 2006 - 12:58:40 CDT)
- Sandra Bennun Serrano (Tue Aug 29 2006 - 12:44:58 CDT)
question about vmd use
- Bjoern Olausson (Mon Apr 12 2010 - 06:16:42 CDT)
- Axel Kohlmeyer (Fri Apr 09 2010 - 04:42:49 CDT)
- Knut Jørgen Bjuland (Fri Apr 09 2010 - 02:26:32 CDT)
Question about vrpn server build for using Phantom with VMD
- John Stone (Tue Jul 13 2010 - 15:13:23 CDT)
- Jeffrey Sanders (Tue Jul 13 2010 - 15:05:58 CDT)
question about water sphere script
- Anatoliy (Mon Nov 05 2007 - 11:21:54 CST)
question from a tutorial
- Lisa Brown (Thu Jan 20 2011 - 14:17:29 CST)
question of iso-surface in VMD graphical representations
- HeeSung Choi (Thu Mar 12 2009 - 14:13:42 CDT)
- HeeSung Choi (Thu Mar 12 2009 - 13:04:01 CDT)
- John Stone (Thu Mar 12 2009 - 13:17:23 CDT)
question of PBC
- Marc Q. Ma (Wed Feb 23 2005 - 11:45:36 CST)
- Margaret Shun Cheung (Wed Feb 23 2005 - 09:42:45 CST)
question on "Recompile VMD with larger index types"
- PaweÅ‚ KÄ™dzierski (Wed Sep 28 2011 - 08:17:35 CDT)
- Axel Kohlmeyer (Wed Sep 28 2011 - 05:44:13 CDT)
- JhonY. I. (Wed Sep 28 2011 - 00:50:33 CDT)
question on color assignment on trajectories
- Axel Kohlmeyer (Mon Nov 15 2010 - 22:06:45 CST)
- JhonY. I. (Mon Nov 15 2010 - 20:29:49 CST)
question on Force
- John Stone (Wed Mar 12 2003 - 17:18:12 CST)
- Ioana Cozmuta (Wed Mar 12 2003 - 14:36:26 CST)
- John Stone (Wed Mar 12 2003 - 14:27:54 CST)
- Ioana Cozmuta (Thu Mar 06 2003 - 21:59:48 CST)
question on ion size
- John Stone (Mon Nov 01 2004 - 18:09:26 CST)
- Hyonseok Hwang (Mon Nov 01 2004 - 17:53:29 CST)
question on prmtop & prmcrd from leap (amber)
- B. Bennion (Fri Oct 18 2002 - 18:13:43 CDT)
- Sichun Yang (Fri Oct 18 2002 - 16:17:46 CDT)
- Sichun Yang (Fri Oct 18 2002 - 16:15:15 CDT)
question on resname
- Ioana Cozmuta (Tue Jul 22 2003 - 21:17:10 CDT)
- Justin Gullingsrud (Tue Jul 22 2003 - 21:13:50 CDT)
- Ioana Cozmuta (Tue Jul 22 2003 - 21:03:56 CDT)
- John Stone (Tue Jun 24 2003 - 10:31:10 CDT)
- Ioana Cozmuta (Mon Jun 23 2003 - 16:16:02 CDT)
question on spin density
- Axel Kohlmeyer (Wed Jan 24 2007 - 17:14:53 CST)
- Robert fiske (Wed Jan 24 2007 - 14:00:32 CST)
question on vmd installation
- Shen (Wed Apr 05 2006 - 03:51:30 CDT)
- John Stone (Tue Apr 04 2006 - 14:43:58 CDT)
- Shen (Tue Apr 04 2006 - 05:57:12 CDT)
- John Stone (Mon Apr 03 2006 - 11:18:45 CDT)
- Shen (Mon Apr 03 2006 - 13:27:38 CDT)
Question regarding g(r) utility
- Axel Kohlmeyer (Wed Jan 26 2011 - 18:35:47 CST)
- Narayanan Veeraraghavan (Wed Jan 26 2011 - 17:30:33 CST)
question regarding H-bond calculation
- Axel Kohlmeyer (Sun May 01 2011 - 11:32:09 CDT)
- JC Gumbart (Sun May 01 2011 - 11:29:18 CDT)
- juzer stationwala (Sun May 01 2011 - 10:31:55 CDT)
Question regarding HBond analysis
- Axel Kohlmeyer (Tue Jan 17 2012 - 13:19:21 CST)
- Axel Kohlmeyer (Mon Jan 16 2012 - 18:13:55 CST)
- Ganesh Kamath (Mon Jan 16 2012 - 17:05:19 CST)
Question Regarding PME Set-up
- John Stone (Mon May 03 2010 - 15:08:32 CDT)
- Stefan Franzen (Sun May 02 2010 - 16:48:20 CDT)
Question Regarding User-Defined Trajectories
- John Stone (Mon Mar 08 2010 - 09:37:25 CST)
- Wallace Dumars (Fri Mar 05 2010 - 15:53:01 CST)
question related to rmsd
- snoze pa (Mon May 05 2008 - 15:03:07 CDT)
Question2 about introducing variables in "mol selection..."
- Axel Kohlmeyer (Fri May 22 2009 - 16:10:24 CDT)
- Alberto Sergio Garay (Fri May 22 2009 - 15:31:51 CDT)
Question3 about introducing variables in "mol selection..."
- Axel Kohlmeyer (Fri May 22 2009 - 17:09:08 CDT)
- Alberto Sergio Garay (Fri May 22 2009 - 16:47:25 CDT)
Question: Cannot input hostname (LINUXAMD64.opengl)
- Hideki Hatanaka (Fri Jan 27 2006 - 10:42:52 CST)
- John Stone (Thu Jan 26 2006 - 14:24:30 CST)
Question: Too many arguments
- Axel Kohlmeyer (Mon Jun 16 2008 - 09:45:36 CDT)
- Leonhard Henkes (Mon Jun 16 2008 - 08:24:15 CDT)
questions
- John Stone (Wed Oct 21 2009 - 16:50:06 CDT)
- Axel Kohlmeyer (Wed Oct 21 2009 - 13:03:57 CDT)
- Umesh Ghoshdastider (Wed Oct 21 2009 - 11:56:24 CDT)
questions about developing a plugin
- Leandro Martínez (Thu May 24 2007 - 10:02:01 CDT)
- Axel Kohlmeyer (Thu May 24 2007 - 08:19:04 CDT)
- Axel Kohlmeyer (Thu May 24 2007 - 08:02:33 CDT)
- Yinglong Miao (Wed May 23 2007 - 22:20:39 CDT)
- Peter Freddolino (Wed May 23 2007 - 19:18:48 CDT)
- Axel Kohlmeyer (Wed May 23 2007 - 16:19:17 CDT)
- Yinglong Miao (Wed May 23 2007 - 15:21:11 CDT)
questions about MSMS and H-bonds
- Andrew Dalke (Fri Mar 05 1999 - 15:04:39 CST)
- Andrew Dalke (Fri Mar 05 1999 - 14:54:07 CST)
- Axel Berg (Fri Mar 05 1999 - 06:38:48 CST)
questions about RBCG
- ½¹±ª (Fri Jun 03 2011 - 21:27:17 CDT)
questions about the electron density map
- John Stone (Fri Apr 03 2009 - 08:00:39 CDT)
- YI Zhang (Fri Apr 03 2009 - 05:38:54 CDT)
Questions about trajectory files obtained from LAMMPS Molecular dynamics with Reax Force field
- Axel Kohlmeyer (Fri Apr 29 2011 - 08:36:01 CDT)
- DreamCatcher (Fri Apr 29 2011 - 07:48:18 CDT)
Questions abt VMD plugins
- Axel Kohlmeyer (Fri Sep 14 2007 - 10:06:06 CDT)
- Audrey Salazar (Fri Sep 14 2007 - 08:59:48 CDT)
questions for 1.8.4
- John Stone (Tue Apr 25 2006 - 10:49:28 CDT)
- Nathan C. Rockwell (Fri Apr 21 2006 - 15:08:00 CDT)
- John Stone (Fri Apr 21 2006 - 14:52:32 CDT)
- Nathan C. Rockwell (Fri Apr 21 2006 - 14:32:16 CDT)
Questions on VMD
- Kramer Campen (Thu May 17 2007 - 17:45:28 CDT)
- Axel Kohlmeyer (Thu May 17 2007 - 16:32:05 CDT)
- Mark Zottola (Thu May 17 2007 - 16:44:10 CDT)
questions relating to VolMapTool
- Axel Kohlmeyer (Wed Jul 23 2008 - 06:30:55 CDT)
- bo liu (Wed Jul 23 2008 - 02:35:18 CDT)
quick help
- John Stone (Wed Oct 02 2002 - 00:54:33 CDT)
- jmp17_at_duke.edu (Wed Oct 02 2002 - 00:48:31 CDT)
Quick question about 3-letter codes for positive residues
- Justin Gullingsrud (Wed Feb 19 2003 - 09:16:52 CST)
- Paul Darwen (Wed Feb 19 2003 - 01:58:36 CST)
Quick TCl scripting question
- Anthony Rey (Thu Sep 22 2011 - 00:02:54 CDT)
- Tim Travers (Wed Sep 21 2011 - 23:57:14 CDT)
- Anthony Rey (Wed Sep 21 2011 - 22:49:02 CDT)
quick-surf and throb
- John Stone (Thu Feb 16 2012 - 09:40:44 CST)
- Philippe Bopp / temporary (Thu Feb 16 2012 - 03:55:32 CST)
quicksurf and PBC
- John Stone (Sat Feb 18 2012 - 11:14:25 CST)
- Axel Kohlmeyer (Sat Feb 18 2012 - 10:57:01 CST)
- Philippe Bopp / temporary (Sat Feb 18 2012 - 09:45:48 CST)
quicktime/mpeg movies
- John Stone (Fri Jun 20 2003 - 14:59:37 CDT)
- Bogdan Costescu (Fri Jun 20 2003 - 14:30:24 CDT)
- John Stone (Wed Jun 18 2003 - 11:21:53 CDT)
- Peter Tieleman (Wed Jun 18 2003 - 10:51:56 CDT)
Quite confused with Movie Maker
- John Stone (Thu Dec 08 2005 - 18:17:02 CST)
- Yinghong (Fri Nov 25 2005 - 18:30:09 CST)
quitting VMD
- John Stone (Thu Sep 23 2004 - 13:22:48 CDT)
- mdcooper (Thu Sep 23 2004 - 12:55:09 CDT)
R.E.D.-III.3 tools release - q4md-forcefieldtools.org
- FyD (Sun Oct 04 2009 - 09:37:06 CDT)
R/S asymmetric carbon
- FyD (Fri Dec 01 2006 - 04:02:39 CST)
R: Distance between center of mass of two amino acid residues.
- Cosseddu, Salvatore (Sun Feb 19 2012 - 13:50:37 CST)
R: I: vmd on windows
- John Stone (Tue Jan 03 2012 - 10:06:38 CST)
- Sergio Decherchi (Tue Jan 03 2012 - 05:42:56 CST)
Radeon FireGL drivers crash VMD
- John Stone (Fri Oct 31 2003 - 09:47:36 CST)
- John Stone (Fri Oct 31 2003 - 09:41:48 CST)
- Jérôme Hénin (Fri Oct 31 2003 - 04:38:39 CST)
- Lucas Watkins (Thu Oct 30 2003 - 06:53:47 CST)
Radial Density
- Jennifer Williams (Wed Mar 19 2008 - 11:12:56 CDT)
- Axel Kohlmeyer (Wed Mar 19 2008 - 11:48:49 CDT)
- Axel Kohlmeyer (Thu Aug 09 2007 - 09:23:39 CDT)
- Olaf Lenz (Thu Aug 09 2007 - 10:19:22 CDT)
- Christopher Stiles (Thu Aug 09 2007 - 09:11:55 CDT)
radial density over one frame
- Axel Kohlmeyer (Sun Mar 09 2008 - 15:49:17 CDT)
- Christopher Stiles (Sun Mar 09 2008 - 14:55:51 CDT)
radial distribution
- Peter Freddolino (Fri Mar 10 2006 - 10:52:38 CST)
- L. Michel Espinoza-Fonseca (Fri Mar 10 2006 - 08:10:56 CST)
radial distribution function
- Axel Kohlmeyer (Thu Feb 09 2012 - 21:09:54 CST)
- Paymon Pirzadeh (Thu Feb 09 2012 - 20:15:15 CST)
- Axel Kohlmeyer (Sat Sep 03 2011 - 16:25:05 CDT)
- Kartheek (Sat Sep 03 2011 - 12:49:00 CDT)
- Axel Kohlmeyer (Sat Sep 03 2011 - 11:20:33 CDT)
- Kartheek (Sat Sep 03 2011 - 10:10:03 CDT)
- Kartheek (Sat Sep 03 2011 - 07:18:46 CDT)
- Kartheek (Sat Sep 03 2011 - 06:32:58 CDT)
- Kartheek (Sat Sep 03 2011 - 05:33:50 CDT)
radial distribution function and number integrals
- Giovanni Bellesia (Wed Mar 05 2008 - 21:26:22 CST)
- Axel Kohlmeyer (Wed Mar 05 2008 - 21:54:46 CST)
- Axel Kohlmeyer (Wed Mar 05 2008 - 16:34:14 CST)
- Giovanni Bellesia (Wed Mar 05 2008 - 13:21:01 CST)
- Axel Kohlmeyer (Wed Mar 05 2008 - 12:45:36 CST)
- Giovanni Bellesia (Wed Mar 05 2008 - 11:45:31 CST)
radial distribution function from the center of mass
- Axel Kohlmeyer (Thu Nov 18 2010 - 20:27:55 CST)
- Axel Kohlmeyer (Thu Nov 18 2010 - 20:20:18 CST)
- David Wedner (Thu Nov 18 2010 - 19:41:56 CST)
Radial distribution function in VMD
- Chirag Vora (Tue Nov 22 2011 - 12:01:52 CST)
radial distribution function problem
- Axel Kohlmeyer (Wed May 26 2010 - 11:26:30 CDT)
- Hyun Tae Jung (Wed May 26 2010 - 08:42:48 CDT)
Radial distribution function script (fwd)
- John Stone (Thu Feb 07 2002 - 21:29:50 CST)
Radial distribution function: "y" axis
- martin klvana (Mon May 17 2010 - 17:05:03 CDT)
- Axel Kohlmeyer (Mon May 17 2010 - 17:13:23 CDT)
- Axel Kohlmeyer (Sun May 16 2010 - 14:01:26 CDT)
- martin klvana (Sun May 16 2010 - 12:39:54 CDT)
radial distribution funtion
- Axel Kohlmeyer (Mon Feb 13 2012 - 21:59:32 CST)
- Paymon Pirzadeh (Mon Feb 13 2012 - 21:43:54 CST)
- Axel Kohlmeyer (Mon Feb 13 2012 - 16:21:16 CST)
- Paymon Pirzadeh (Mon Feb 13 2012 - 15:21:25 CST)
radial pair distribution function: molecule/water?
- Axel Kohlmeyer (Mon Sep 04 2006 - 12:14:28 CDT)
- Ivan Degtyarenko (Mon Sep 04 2006 - 11:31:35 CDT)
radial pair distribution problems
- John Stone (Wed Sep 21 2011 - 11:22:33 CDT)
- aiswarya pawar (Wed Sep 21 2011 - 01:27:50 CDT)
radius of gyration
- Ajasja LjubetiÄ (Wed Nov 02 2011 - 16:14:59 CDT)
- ban arn (Wed Nov 02 2011 - 16:02:45 CDT)
- Axel Kohlmeyer (Wed Nov 02 2011 - 15:49:19 CDT)
- ban arn (Wed Nov 02 2011 - 14:41:09 CDT)
- John Stone (Tue May 10 2005 - 10:16:01 CDT)
- Cetin Baloglu (Tue May 10 2005 - 09:47:59 CDT)
radius of gyration units
- John Stone (Tue Nov 03 2009 - 16:32:20 CST)
- Roman Petrenko (Tue Nov 03 2009 - 16:18:24 CST)
- John Stone (Tue Nov 03 2009 - 16:13:10 CST)
- Roman Petrenko (Tue Nov 03 2009 - 15:59:54 CST)
- Leonardo Trabuco (Tue Nov 03 2009 - 15:13:19 CST)
- Bernardo Sosa Padilla Araujo (Tue Nov 03 2009 - 15:08:36 CST)
radius of the curvature
- Axel Kohlmeyer (Wed Nov 29 2006 - 12:31:59 CST)
- Samuel C Flores (Wed Nov 29 2006 - 12:16:50 CST)
- Axel Kohlmeyer (Tue Nov 28 2006 - 16:08:29 CST)
- ivana adamovic (Tue Nov 28 2006 - 14:33:01 CST)
Rainbow color scheme for VolumeSlice / Volume
- John Stone (Tue Dec 04 2007 - 18:03:05 CST)
- Xavier Cartoixa Soler (Tue Dec 04 2007 - 05:41:36 CST)
Rama plot
- Ekta Khurana (Tue May 10 2005 - 11:31:27 CDT)
- Axel Kohlmeyer (Tue May 10 2005 - 01:53:57 CDT)
- Ekta Khurana (Mon May 09 2005 - 18:34:48 CDT)
- Michel Espinoza-Fonseca (Mon May 09 2005 - 18:27:12 CDT)
- Ekta Khurana (Mon May 09 2005 - 18:07:40 CDT)
- John Stone (Mon Feb 23 2004 - 10:58:56 CST)
- Ioana Cozmuta (Fri Feb 20 2004 - 19:48:17 CST)
Ramachandran Map of 2 pdbs
- Justin Gullingsrud (Fri Sep 08 2006 - 14:50:35 CDT)
- John Stone (Fri Sep 08 2006 - 13:13:23 CDT)
- Rathinavelan, Thenmalarchelvi (Fri Sep 08 2006 - 12:43:32 CDT)
Ramachandran plot
- Charles McCallum (Tue May 10 2005 - 22:56:14 CDT)
- Ekta Khurana (Mon May 09 2005 - 18:00:46 CDT)
Ramachandran plot tcl script
- Axel Kohlmeyer (Sat Feb 23 2008 - 17:17:38 CST)
- Anthony Samiotakis (Sat Feb 23 2008 - 15:54:50 CST)
ramaplot
- Axel Kohlmeyer (Fri Mar 14 2008 - 09:37:41 CDT)
- ramya narasimhan (Fri Mar 14 2008 - 00:46:30 CDT)
random graphics outages on startup
- Oliver Beckstein (Thu Feb 05 2004 - 12:23:42 CST)
- John Stone (Wed Feb 04 2004 - 10:42:19 CST)
- Bogdan Costescu (Wed Feb 04 2004 - 10:47:59 CST)
- Oliver Beckstein (Wed Feb 04 2004 - 08:06:33 CST)
rasmol script
- Andrew Dalke (Tue Mar 20 2001 - 22:45:49 CST)
- Yunfeng Hu (Tue Mar 20 2001 - 19:36:24 CST)
raster3d
- John Stone (Thu Aug 02 2001 - 19:13:49 CDT)
- Yunfeng Hu (Thu Aug 02 2001 - 19:11:28 CDT)
Raytracing with tachyon/povray because of pb with raster3d
- John Stone (Tue Nov 26 2002 - 13:34:38 CST)
- John Stone (Tue Nov 26 2002 - 13:11:26 CST)
- Bogdan Costescu (Tue Nov 26 2002 - 12:58:40 CST)
- Marc Baaden (Tue Nov 26 2002 - 12:02:51 CST)
- Bogdan Costescu (Tue Nov 26 2002 - 11:41:38 CST)
- John Stone (Tue Nov 26 2002 - 11:17:33 CST)
- Marc Baaden (Tue Nov 26 2002 - 10:47:22 CST)
RBCG bead diameter
- Axel Kohlmeyer (Sat Oct 31 2009 - 14:42:05 CDT)
- Christine Horejs (Wed Oct 28 2009 - 11:54:50 CDT)
RBCG Model
- Katherine Parra (Tue Oct 27 2009 - 09:19:55 CDT)
RDF and Coordination Number
- Axel Kohlmeyer (Fri May 28 2010 - 08:52:10 CDT)
- Amir Hajiahmadi Farmahini (Fri May 28 2010 - 05:40:15 CDT)
RDF calculation
- Ramya Gamini (Mon Oct 25 2010 - 11:44:58 CDT)
- sarah k (Mon Oct 25 2010 - 10:21:40 CDT)
RDF calculation for production steps
- Dudo (Thu Sep 15 2011 - 15:23:15 CDT)
- Axel Kohlmeyer (Thu Sep 15 2011 - 10:38:16 CDT)
- Goldsmith, Jacob (Thu Sep 15 2011 - 08:25:20 CDT)
- Axel Kohlmeyer (Tue Sep 13 2011 - 23:51:17 CDT)
- siladitya mukherjee (Tue Sep 13 2011 - 15:15:53 CDT)
RDF calculations
- Axel Kohlmeyer (Fri Jul 13 2007 - 17:38:35 CDT)
- Fred Moore (Fri Jul 13 2007 - 15:16:40 CDT)
rdf curve
- Axel Kohlmeyer (Tue Dec 22 2009 - 09:08:20 CST)
- gurunath katagi (Tue Dec 22 2009 - 08:17:57 CST)
rdf for big systems
- Valeria Molinero (Tue Aug 12 2008 - 18:35:42 CDT)
- Axel Kohlmeyer (Mon Aug 11 2008 - 13:35:11 CDT)
- John Stone (Mon Aug 11 2008 - 11:45:07 CDT)
- Valeria Molinero (Mon Aug 11 2008 - 11:40:45 CDT)
- John Stone (Wed Aug 06 2008 - 11:24:27 CDT)
- John Stone (Thu Jul 31 2008 - 13:00:35 CDT)
- Valeria Molinero (Tue Jul 22 2008 - 18:58:25 CDT)
- Axel Kohlmeyer (Tue Jul 22 2008 - 19:09:09 CDT)
- Axel Kohlmeyer (Tue Jul 22 2008 - 17:06:30 CDT)
- Valeria Molinero (Tue Jul 22 2008 - 16:23:04 CDT)
rdf for specific group of atoms
- Axel Kohlmeyer (Wed Jun 15 2011 - 09:14:46 CDT)
- Rupashree Shyama Ray (Wed Jun 15 2011 - 08:29:29 CDT)
Rdf from a specific point
- Robert Coridan (Fri Feb 01 2008 - 11:48:19 CST)
- Axel Kohlmeyer (Fri Feb 01 2008 - 11:48:12 CST)
- Axel Kohlmeyer (Fri Feb 01 2008 - 08:55:39 CST)
- Robert Coridan (Fri Feb 01 2008 - 06:12:42 CST)
rdf plugin in vmd 1.85
- Axel Kohlmeyer (Wed Sep 13 2006 - 14:24:10 CDT)
- dimka (Wed Sep 13 2006 - 14:08:29 CDT)
RDF related problems
- Axel Kohlmeyer (Sat Sep 24 2011 - 16:19:21 CDT)
- siladitya mukherjee (Sat Sep 24 2011 - 15:17:37 CDT)
rdf using gui
- syma (Tue Mar 27 2007 - 16:49:06 CDT)
- Axel Kohlmeyer (Tue Mar 27 2007 - 16:44:09 CDT)
- syma (Tue Mar 27 2007 - 16:18:57 CDT)
RDF.tcl
- Axel Kohlmeyer (Fri Jul 28 2006 - 17:28:49 CDT)
- griadi_at_utalca.cl (Fri Jul 28 2006 - 17:01:24 CDT)
- John Stone (Fri Oct 14 2005 - 15:18:53 CDT)
- bizoniusz_at_o2.pl (Fri Oct 14 2005 - 07:02:26 CDT)
rdf.tcl one more time
- John Stone (Mon Oct 17 2005 - 17:20:20 CDT)
- bizoniusz_at_o2.pl (Mon Oct 17 2005 - 10:19:28 CDT)
RDFs etc
- Storr, Mark (Mon May 06 2002 - 11:18:54 CDT)
RDFs, TCFs etc.
- John Stone (Mon May 06 2002 - 10:15:14 CDT)
Re : ellipsoidal particles
- Tru Huynh (Mon May 03 2010 - 02:57:21 CDT)
- Germain Vallverdu (Sun May 02 2010 - 15:29:22 CDT)
RE : Get the camera position
- SAPAY Nicolas 232321 (Thu Dec 01 2011 - 04:22:34 CST)
RE : pbc tools in vmd for simulation
- Knut JÃ¸rgen Bjuland (Sun Apr 18 2010 - 00:54:27 CDT)
- Olaf Lenz (Sat Apr 17 2010 - 10:06:32 CDT)
- bharat gupta (Sat Apr 17 2010 - 08:40:16 CDT)
RE : PCA of desmond trajectories
- John Stone (Wed Feb 01 2012 - 10:41:58 CST)
- Hitesh Patel (Wed Feb 01 2012 - 10:26:44 CST)
RE : Plot the value of the current frame in the Progress Bar for elapsed Time
- Axel Kohlmeyer (Thu Dec 02 2010 - 13:44:37 CST)
re :psfgen question
- li (Fri Mar 26 2004 - 01:00:28 CST)
Re PSF file generation
- Axel Kohlmeyer (Mon Jul 20 2009 - 08:49:33 CDT)
- karthigeyan karthigeyantp (Mon Jul 20 2009 - 07:34:51 CDT)
re-centering view/rotation axes
- Charles McCallum (Mon Aug 11 2003 - 17:03:37 CDT)
Re-create Figures in VMD Images and Movies Tutorial
- John Stone (Sun Mar 30 2008 - 15:51:16 CDT)
- Dong Xu (Mon Mar 17 2008 - 16:17:57 CDT)
Re2: ERROR: graphics: color index value '1057' out of range
- John Stone (Sun Feb 27 2011 - 22:03:44 CST)
- Jervis Chu (Sun Feb 27 2011 - 20:43:03 CST)
Read dcd file error using vmd1.8.5 for windows
- John Stone (Wed Nov 29 2006 - 15:04:27 CST)
- Shaojie Ma (Tue Nov 28 2006 - 00:41:53 CST)
- John Stone (Mon Nov 27 2006 - 22:21:59 CST)
- Shaojie Ma (Mon Nov 27 2006 - 21:49:46 CST)
Read support for CHARMM binary coordinate file?
- Chang, Christopher (Thu Aug 25 2005 - 17:59:55 CDT)
- John Stone (Thu Aug 25 2005 - 17:44:57 CDT)
- Chang, Christopher (Tue Aug 23 2005 - 17:28:31 CDT)
read the pdb file using VMD
- Avell Diroll (Wed Mar 07 2007 - 17:39:38 CST)
- Axel Kohlmeyer (Tue Mar 06 2007 - 01:30:16 CST)
- Esther Brugger (Mon Mar 05 2007 - 17:00:36 CST)
read_next_timestep(...)
- John Stone (Tue Feb 21 2006 - 09:53:55 CST)
- Marco Kalweit (Tue Feb 21 2006 - 07:08:40 CST)
readable files
- J. Rui Rodrigues (Mon Aug 02 2004 - 15:58:29 CDT)
- John Stone (Mon Aug 02 2004 - 15:50:33 CDT)
- pinisetty dinesh (Mon Aug 02 2004 - 14:47:58 CDT)
reading .vel files and .veldcd files
- Mao Mao (Wed May 18 2011 - 10:50:46 CDT)
Reading a pdbqt file (generated from AutoDock)
- John Stone (Fri Jul 20 2007 - 13:27:53 CDT)
- Arneh Babakhani (Fri Jul 20 2007 - 12:35:24 CDT)
- John Stone (Fri Jul 20 2007 - 11:27:39 CDT)
- Arneh Babakhani (Fri Jul 20 2007 - 09:19:00 CDT)
- Axel Kohlmeyer (Fri Jul 20 2007 - 00:02:24 CDT)
- Arneh Babakhani (Thu Jul 19 2007 - 18:01:01 CDT)
Reading additional atom properties
- Lutz Maibaum (Tue May 15 2007 - 20:46:25 CDT)
- John Stone (Tue May 15 2007 - 13:12:34 CDT)
- Lutz Maibaum (Thu May 03 2007 - 20:07:12 CDT)
Reading Amber .crd files
- John Stone (Tue Jul 18 2006 - 12:38:26 CDT)
- campen_at_geosc.psu.edu (Tue Jul 18 2006 - 12:25:17 CDT)
Reading Amber .prd and PARM files into VMD
- John Stone (Tue Jul 18 2006 - 12:37:27 CDT)
- campen_at_geosc.psu.edu (Tue Jul 18 2006 - 08:32:37 CDT)
Reading arrays in VMD
- JC Gumbart (Thu Sep 08 2005 - 11:37:27 CDT)
- VISWANADHA SRIDHARA (Thu Sep 08 2005 - 03:38:02 CDT)
Reading box info. from PQR file
- John Stone (Tue Nov 07 2006 - 17:05:14 CST)
- Axel Kohlmeyer (Mon Oct 30 2006 - 10:54:13 CST)
- Bob Johnson (Mon Oct 30 2006 - 10:02:43 CST)
reading charmm files
- Axel Kohlmeyer (Mon Mar 05 2007 - 11:56:34 CST)
- George Madalin Giambasu (Mon Mar 05 2007 - 08:57:11 CST)
- Axel Kohlmeyer (Mon Mar 05 2007 - 08:27:12 CST)
- Grazia Daminelli (Mon Mar 05 2007 - 07:48:22 CST)
reading cmap wih vmd
- Charles McCallum (Fri Aug 18 2006 - 10:23:57 CDT)
- John Stone (Thu Aug 17 2006 - 23:43:50 CDT)
- L. Michel Espinoza-Fonseca (Thu Aug 17 2006 - 19:17:26 CDT)
reading cube files
- John Stone (Thu Aug 22 2002 - 11:34:29 CDT)
- Vlad Cojocaru (Thu Aug 22 2002 - 10:58:09 CDT)
reading DLPoly VMD 1.8.4
- Mgr. Lubos Vrbka (Sat May 20 2006 - 04:24:10 CDT)
- John Stone (Fri May 19 2006 - 15:28:44 CDT)
- Mgr. Lubos Vrbka (Thu May 18 2006 - 14:40:41 CDT)
- John Stone (Thu May 18 2006 - 11:42:17 CDT)
- Javier Sacristan (Wed May 17 2006 - 17:55:26 CDT)
Reading GOLD .sdf output files
- Todd J. Furlong (Tue Apr 30 2002 - 09:09:03 CDT)
Reading in a MOL2 file
- Peter Freddolino (Tue May 29 2007 - 12:16:16 CDT)
- Mark Zottola (Tue May 29 2007 - 11:31:44 CDT)
Reading in unit cell
- Justin Gullingsrud (Mon Nov 17 2003 - 22:15:14 CST)
- David Chalmers (Mon Nov 17 2003 - 17:45:13 CST)
Reading large traj file error or how to divide a large traj file into parts?
- John Stone (Wed Sep 10 2003 - 16:07:34 CDT)
- Peng Tao (Wed Sep 10 2003 - 15:12:44 CDT)
- John Stone (Wed Sep 10 2003 - 14:56:18 CDT)
- Peng Tao (Wed Sep 10 2003 - 14:15:43 CDT)
Reading MatStudio/ LAMMPS structures to VMD
- Axel Kohlmeyer (Fri Oct 29 2010 - 11:37:11 CDT)
- Aric Newton (Fri Oct 29 2010 - 09:16:30 CDT)
- Axel Kohlmeyer (Tue Oct 26 2010 - 09:43:48 CDT)
- Axel Kohlmeyer (Sun Oct 24 2010 - 17:02:38 CDT)
- Aric Newton (Sat Oct 23 2010 - 18:45:06 CDT)
reading minimalised pdb files
- Andrew Dalke (Tue Oct 07 1997 - 04:34:33 CDT)
- Nithin Rai (Tue Oct 07 1997 - 04:12:06 CDT)
reading multiples molecules.
- Axel Kohlmeyer (Wed Oct 29 2008 - 11:07:55 CDT)
- Leonardo Trabuco (Wed Oct 29 2008 - 10:29:36 CDT)
- Axel Kohlmeyer (Wed Oct 29 2008 - 10:14:50 CDT)
- no tengo nombre (Wed Oct 29 2008 - 05:26:09 CDT)
- no tengo nombre (Wed Oct 29 2008 - 04:17:12 CDT)
- Axel Kohlmeyer (Tue Oct 28 2008 - 09:20:54 CDT)
- Benjamin Bouvier (Tue Oct 28 2008 - 06:15:45 CDT)
- no tengo nombre (Tue Oct 28 2008 - 05:05:19 CDT)
Reading new amber prmtop formats.
- John Stone (Thu Sep 17 2009 - 12:50:48 CDT)
- John Stone (Wed Sep 16 2009 - 16:08:07 CDT)
- Thomas C. Bishop (Wed Sep 16 2009 - 15:37:17 CDT)
- John Stone (Wed Sep 16 2009 - 13:46:26 CDT)
- Axel Kohlmeyer (Wed Sep 16 2009 - 13:28:37 CDT)
- Crowley, Michael (Wed Sep 16 2009 - 12:21:42 CDT)
reading of one frame from DCD file
- Eduard Schreiner (Tue Nov 30 2010 - 19:44:55 CST)
- JhonY. I. (Tue Nov 30 2010 - 18:13:14 CST)
- JhonY. I. (Tue Nov 30 2010 - 18:12:03 CST)
Reading output of quantum packages and plotting orbitals
- saam (Fri Oct 23 2009 - 10:21:07 CDT)
- John Stone (Fri Oct 23 2009 - 09:49:38 CDT)
- Ignacio Fernández Galván (Fri Oct 23 2009 - 09:29:32 CDT)
- saam (Fri Oct 23 2009 - 08:39:32 CDT)
- Ignacio Fernández Galván (Fri Oct 23 2009 - 03:29:22 CDT)
- John Stone (Mon Oct 05 2009 - 21:10:49 CDT)
- Axel Kohlmeyer (Fri Oct 02 2009 - 11:52:09 CDT)
- Ignacio Fernández Galván (Fri Oct 02 2009 - 03:01:36 CDT)
- Axel Kohlmeyer (Wed Sep 30 2009 - 17:38:26 CDT)
- Ignacio Fernández Galván (Wed Sep 30 2009 - 11:57:35 CDT)
Reading PSF with extended atom types
- Gianluca Interlandi (Wed Jun 22 2011 - 00:05:18 CDT)
reading structure *.xyz
- Axel Kohlmeyer (Tue Jul 20 2004 - 17:39:02 CDT)
- Luciano (Tue Jul 20 2004 - 13:57:30 CDT)
Reading the SMD information form the log file
- Chris Harrison (Fri Dec 02 2011 - 11:37:38 CST)
- Molybdos Kirkimpolakis (Fri Dec 02 2011 - 10:34:27 CST)
- Molybdos Kirkimpolakis (Wed Nov 30 2011 - 14:54:45 CST)
reading/writing
- Ioana Cozmuta (Thu Aug 28 2003 - 20:10:53 CDT)
- John Stone (Thu Aug 28 2003 - 19:58:15 CDT)
- John Stone (Thu Aug 28 2003 - 15:38:18 CDT)
- Ioana Cozmuta (Mon Aug 25 2003 - 19:29:55 CDT)
- John Stone (Mon Aug 25 2003 - 19:11:16 CDT)
- Ioana Cozmuta (Mon Aug 25 2003 - 18:24:27 CDT)
reagsrding writemol2
- Peter Freddolino (Fri Dec 05 2008 - 09:00:29 CST)
- jani sahil (Fri Dec 05 2008 - 00:11:42 CST)
Real Cash, Real Profit....Believe it !!!
- cashprofit3_at_address.com (Tue Mar 21 2000 - 00:09:55 CST)
real coordinates
- Axel Kohlmeyer (Fri Jul 18 2008 - 12:08:25 CDT)
- Maria Sanchez Farran (Thu Jul 17 2008 - 21:40:46 CDT)
Real-time ambient occlusion lighting
- John Stone (Wed Oct 13 2010 - 11:22:46 CDT)
- Ajasja LjubetiÄ (Wed Oct 13 2010 - 11:12:57 CDT)
- John Stone (Wed Oct 13 2010 - 10:43:47 CDT)
- Ajasja LjubetiÄ (Wed Oct 13 2010 - 06:01:01 CDT)
- John Stone (Tue Oct 12 2010 - 19:58:12 CDT)
- Boris Steipe (Tue Oct 12 2010 - 19:07:16 CDT)
- John Stone (Tue Oct 12 2010 - 16:24:42 CDT)
- Ajasja LjubetiÄ (Tue Oct 12 2010 - 15:54:00 CDT)
RealD (Stereographics) E2SGI emitter on Quadro 3450?
- John Stone (Fri Aug 18 2006 - 22:33:36 CDT)
- Sabuj Pattanayek (Fri Aug 18 2006 - 20:25:24 CDT)
Rebuilding lipid from headgroup coordinates only using psfgen, some atoms put on origin
- Jim Phillips (Sat Sep 08 2007 - 21:56:51 CDT)
- maria goranovic (Wed Sep 05 2007 - 11:05:12 CDT)
Rebuilding psf file
- Siew Wen Leong (Wed Nov 23 2011 - 04:45:38 CST)
Recall: Hbond analysis message
- George Tzotzos (Tue Dec 20 2011 - 13:52:02 CST)
Recent Geforce Cuda GPU cards(GT 440, GTX 560ti)
- John Stone (Wed Apr 13 2011 - 12:57:44 CDT)
- Burgess, Don E (Wed Apr 13 2011 - 11:26:02 CDT)
Recent VMD-L mails, etc..
- John Stone (Wed Jun 30 2004 - 13:40:21 CDT)
recenter
- Olaf Lenz (Tue Apr 05 2011 - 02:29:57 CDT)
- Mark M Huntress (Mon Apr 04 2011 - 15:04:17 CDT)
- Olaf Lenz (Mon Apr 04 2011 - 02:11:25 CDT)
- Mark M Huntress (Sun Apr 03 2011 - 16:34:17 CDT)
Recenter membrane bilayer to unit cell
- Olaf Lenz (Wed May 12 2010 - 04:55:06 CDT)
- Mühlbacher, Markus (Wed May 12 2010 - 03:37:13 CDT)
recenter peptide in PBC
- John Stone (Wed Jan 03 2007 - 10:38:43 CST)
- _at_huji.ac.il (Tue Dec 26 2006 - 04:54:20 CST)
Recentering the box on target molecule and wraping
- Arturas Ziemys (Mon Sep 11 2006 - 10:39:55 CDT)
Recognition of backbone in 5'-end
- Sanjeev B.S. (Fri Jan 30 2004 - 05:40:46 CST)
Recognized atom types by VMD PDB reader
- John Stone (Fri Jul 20 2007 - 13:31:15 CDT)
- Arneh Babakhani (Fri Jul 20 2007 - 12:52:48 CDT)
recognizing TCL variables in a matrix argument
- Axel Kohlmeyer (Thu Apr 15 2010 - 19:45:15 CDT)
- Ronald Salesky (Thu Apr 15 2010 - 16:06:56 CDT)
Recompile VMD with larger index types
- Axel Kohlmeyer (Sun May 11 2008 - 11:18:17 CDT)
- Alexandre A. Vakhrouchev (Sun May 11 2008 - 11:20:47 CDT)
- John Stone (Sun May 11 2008 - 00:48:35 CDT)
- Axel Kohlmeyer (Sat May 10 2008 - 10:19:36 CDT)
- John Stone (Sat May 10 2008 - 10:24:43 CDT)
- Alexandre A. Vakhrouchev (Sat May 10 2008 - 07:36:43 CDT)
reconstructing PMF
- Ioana Cozmuta (Tue Apr 11 2006 - 16:57:02 CDT)
Reconstruction of XST data from DCD data
- Axel Kohlmeyer (Sun May 01 2011 - 20:15:06 CDT)
- B.M.B. Vanschouwen (Sun May 01 2011 - 19:29:03 CDT)
record changed {x y z}
- Paul Grayson (Wed Mar 20 2002 - 13:31:50 CST)
- Yufang Wang (Wed Mar 20 2002 - 10:50:02 CST)
redefining macros vs. update of selections
- John Stone (Tue Jun 26 2007 - 14:52:31 CDT)
- Axel Kohlmeyer (Mon Jun 25 2007 - 19:28:53 CDT)
redhat linux vmd
- John Stone (Tue May 23 2006 - 13:09:02 CDT)
- a a (Mon May 22 2006 - 21:18:43 CDT)
- John Stone (Mon May 22 2006 - 16:19:39 CDT)
- a a (Mon May 22 2006 - 03:51:59 CDT)
redirecting to output
- John Stone (Thu Sep 22 2011 - 01:42:26 CDT)
- Kei Sit (Thu Sep 22 2011 - 00:32:53 CDT)
- kirtana S (Wed Sep 21 2011 - 13:31:52 CDT)
reference about structure
- John Stone (Tue Oct 29 2002 - 09:49:31 CST)
- Vlad Cojocaru (Tue Oct 29 2002 - 04:34:57 CST)
Reference for SASA
- John Stone (Tue Aug 14 2007 - 15:38:20 CDT)
- Patrick Redmill (Sat Aug 11 2007 - 17:48:03 CDT)
Reference to SASA calculation in VMD
- John Stone (Thu Oct 20 2005 - 15:20:13 CDT)
- Basak Isin (Tue Oct 18 2005 - 10:12:24 CDT)
Refreshing the screen
- John Stone (Thu May 04 2006 - 17:09:17 CDT)
- Chang Hu (Thu May 04 2006 - 14:12:16 CDT)
- Chang Hu (Thu May 04 2006 - 13:24:47 CDT)
- John Stone (Thu May 04 2006 - 12:25:38 CDT)
- Chang Hu (Thu May 04 2006 - 11:58:12 CDT)
Reg: BABEL
- Shantipriya Tenneti (Sun Jul 13 2003 - 15:30:20 CDT)
Reg: General question!
- Shantipriya Tenneti (Mon Sep 08 2003 - 11:26:39 CDT)
Reg: No. of Frames
- Justin Gullingsrud (Mon Jul 28 2003 - 13:40:12 CDT)
- Axel Kohlmeyer (Mon Jul 28 2003 - 13:33:51 CDT)
- Shantipriya Tenneti (Mon Jul 28 2003 - 13:04:31 CDT)
- Axel Kohlmeyer (Mon Jul 28 2003 - 02:13:51 CDT)
- Shantipriya Tenneti (Sun Jul 27 2003 - 02:11:09 CDT)
Reg:Babel
- Shantipriya Tenneti (Sun Jul 13 2003 - 14:57:10 CDT)
regarding 1ORQ.pdb
- Viswanadham Sridhara (Thu Dec 15 2005 - 14:37:17 CST)
Regarding APBS calculation in VMD
- Axel Kohlmeyer (Tue Jul 17 2007 - 07:43:04 CDT)
- naga raju (Tue Jul 17 2007 - 07:39:06 CDT)
Regarding com file error
- JC Gumbart (Wed Feb 07 2007 - 16:32:46 CST)
- Javaria Ahmad (Wed Feb 07 2007 - 16:10:15 CST)
- Jan Saam (Mon Feb 05 2007 - 12:57:27 CST)
- Axel Kohlmeyer (Mon Feb 05 2007 - 12:20:12 CST)
- John Stone (Mon Feb 05 2007 - 10:01:01 CST)
- Javaria Ahmed (Sun Feb 04 2007 - 23:23:40 CST)
Regarding coordinates transformation
- aneesh cna (Thu Feb 25 2010 - 23:51:15 CST)
- John Stone (Thu Feb 25 2010 - 16:33:13 CST)
- aneesh cna (Wed Feb 24 2010 - 01:04:27 CST)
regarding counting water molecules
- Joshua Adelman (Wed Dec 22 2010 - 07:26:33 CST)
regarding draw_arrow.tcl
- Falgun Shah (Fri Mar 13 2009 - 10:40:47 CDT)
- John Stone (Fri Mar 13 2009 - 10:14:21 CDT)
- Axel Kohlmeyer (Fri Mar 13 2009 - 09:51:23 CDT)
- Falgun Shah (Fri Mar 13 2009 - 08:56:31 CDT)
- Axel Kohlmeyer (Wed Mar 11 2009 - 11:30:30 CDT)
- John Stone (Wed Mar 11 2009 - 10:36:05 CDT)
- Falgun Shah (Mon Mar 09 2009 - 17:55:58 CDT)
regarding fit_angle.tcl
- jani vinod (Wed May 19 2010 - 01:41:34 CDT)
- John Stone (Tue May 18 2010 - 23:40:16 CDT)
- jani vinod (Tue May 18 2010 - 23:14:46 CDT)
- John Stone (Tue May 18 2010 - 16:02:37 CDT)
- jani vinod (Tue May 11 2010 - 07:04:20 CDT)
Regarding fitframes.tcl
- Eduard Schreiner (Tue Jan 04 2011 - 07:48:33 CST)
- pragya.saxena_at_research.iiit.ac.in (Tue Jan 04 2011 - 07:37:45 CST)
- pragya.saxena_at_research.iiit.ac.in (Tue Jan 04 2011 - 06:41:21 CST)
- Eduard Schreiner (Tue Jan 04 2011 - 05:31:58 CST)
- pragya.saxena_at_research.iiit.ac.in (Tue Jan 04 2011 - 04:51:39 CST)
regarding generating movie
- jani sahil (Fri Dec 04 2009 - 23:56:42 CST)
- John Stone (Fri Dec 04 2009 - 14:06:51 CST)
- jani sahil (Fri Dec 04 2009 - 02:49:19 CST)
regarding installation
- John Stone (Sun Apr 11 2010 - 22:25:56 CDT)
- Asfa Ali (Fri Apr 09 2010 - 10:45:45 CDT)
regarding merging of protein and a ligand
- Joshua Adelman (Sat Nov 06 2010 - 18:03:19 CDT)
- Axel Kohlmeyer (Sat Nov 06 2010 - 16:54:53 CDT)
- vani panguluri (Sat Nov 06 2010 - 15:43:13 CDT)
Regarding merging of two files
- John Stone (Wed Nov 03 2010 - 13:40:30 CDT)
- Joshua Adelman (Wed Nov 03 2010 - 13:44:08 CDT)
- vani panguluri (Wed Nov 03 2010 - 13:30:40 CDT)
- Joseph Bylund (Wed Nov 03 2010 - 13:08:21 CDT)
- John Stone (Wed Nov 03 2010 - 13:03:11 CDT)
- vani panguluri (Wed Nov 03 2010 - 12:18:16 CDT)
Regarding paratool
- Jan Saam (Wed Jan 31 2007 - 14:14:01 CST)
- Jan Saam (Mon Jan 29 2007 - 11:00:14 CST)
- John Stone (Fri Jan 26 2007 - 02:10:24 CST)
- Javaria Ahmed (Wed Jan 24 2007 - 16:18:01 CST)
Regarding paratool, assign atom types
- Jan Saam (Wed Jan 31 2007 - 14:30:55 CST)
- Javaria Ahmed (Mon Jan 29 2007 - 16:22:17 CST)
- Jan Saam (Mon Jan 29 2007 - 10:56:30 CST)
regarding positioning of protein molecule
- Ramya Gamini (Thu Jun 25 2009 - 01:48:07 CDT)
regarding rotating dihedral
- Peter Freddolino (Wed Sep 17 2008 - 22:39:40 CDT)
- John Stone (Wed Sep 17 2008 - 21:58:14 CDT)
- jani sahil (Tue Sep 16 2008 - 22:26:17 CDT)
Regarding saving data
- John Stone (Wed Apr 04 2012 - 15:10:03 CDT)
- snoze pa (Wed Apr 04 2012 - 12:21:39 CDT)
regarding selecting complete residues within a distance
- Eduard Schreiner (Fri May 25 2007 - 07:41:48 CDT)
- naga raju (Fri May 25 2007 - 04:43:49 CDT)
Regarding the Use of STL Files as Boundary Features
- John Stone (Thu May 24 2012 - 10:32:08 CDT)
- Phelan Jr, Frederick R. Dr. (Wed May 23 2012 - 11:05:46 CDT)
regarding writemol2
- Peter Freddolino (Sat Dec 06 2008 - 19:42:33 CST)
- jani sahil (Sat Dec 06 2008 - 00:34:19 CST)
regular expression in Tcl
- Axel Kohlmeyer (Tue Sep 04 2007 - 09:12:58 CDT)
- Èùìáò Åõáããåëéäçò (Tue Sep 04 2007 - 06:13:56 CDT)
Regular Expression problem with $
- Andrew Dalke (Tue Apr 30 2002 - 20:38:10 CDT)
- jen ramus (Tue Apr 30 2002 - 20:24:52 CDT)
Rejecting plugin...
- John Stone (Fri Jun 26 2009 - 14:28:30 CDT)
- Gustavo Seabra (Thu Jun 25 2009 - 15:15:25 CDT)
- John Stone (Wed Jun 24 2009 - 22:31:15 CDT)
- Gustavo Seabra (Wed Jun 24 2009 - 17:53:26 CDT)
- John Stone (Wed Jun 24 2009 - 14:34:53 CDT)
- Axel Kohlmeyer (Wed Jun 24 2009 - 14:30:15 CDT)
- Gustavo Seabra (Wed Jun 24 2009 - 14:04:25 CDT)
Release Date for v.1.2 ??
- Simon Hogg (Thu Nov 20 1997 - 17:35:06 CST)
release memory in TCL
- Axel Kohlmeyer (Thu Jun 07 2007 - 18:59:10 CDT)
- Axel Kohlmeyer (Thu Jun 07 2007 - 17:46:50 CDT)
- Robert Brunner (Thu Jun 07 2007 - 14:32:44 CDT)
- lily jin (Thu Jun 07 2007 - 11:46:11 CDT)
- Jerome Henin (Wed Jun 06 2007 - 17:47:26 CDT)
- Axel Kohlmeyer (Wed Jun 06 2007 - 16:35:17 CDT)
- lily jin (Wed Jun 06 2007 - 14:44:13 CDT)
Release of R.E.D. Server
- FyD (Thu Apr 09 2009 - 03:31:30 CDT)
Release of R.E.D. Server 2.0
- FyD (Thu Nov 04 2010 - 04:50:36 CDT)
Release of RESP ESP charge DDatabase
- FyD (Mon Jan 16 2006 - 10:06:08 CST)
Release of the R.E.D.-III tools
- FyD (Sun Apr 15 2007 - 05:22:35 CDT)
Release of the R.E.D.-III.1 tools
- FyD (Mon Jan 12 2009 - 05:59:14 CST)
Release of the R.E.D.-III.4 tools
- FyD (Wed Jul 07 2010 - 02:04:36 CDT)
Release of the R.E.D.-III.5 tools
- FyD (Wed Feb 22 2012 - 05:00:23 CST)
Reliable w4tches for everyone at Prest1ge Repl1cas
- Michele Garrett (Sat Apr 21 2007 - 10:20:56 CDT)
REMD + RBCG
- Peter Freddolino (Wed Aug 18 2010 - 00:30:20 CDT)
- Gregorio Alanislobato (Tue Aug 17 2010 - 19:51:10 CDT)
- Gregorio Alanislobato (Tue Aug 17 2010 - 18:26:08 CDT)
- Peter Freddolino (Tue Aug 17 2010 - 18:14:05 CDT)
- Gregorio Alanislobato (Tue Aug 17 2010 - 16:12:22 CDT)
Remote Control
- Timm Essigke (Mon Feb 21 2000 - 12:12:44 CST)
remote control (fifo/socket) ?
- John Stone (Tue Feb 04 2003 - 10:08:06 CST)
- Oliver Beckstein (Tue Feb 04 2003 - 09:58:54 CST)
Remote control of VMD on SGI-NT mixture
- Andrew Hall (Wed Apr 26 2000 - 11:11:50 CDT)
remote display
- Juan Alfredo Freites (Thu Dec 11 2003 - 12:28:18 CST)
- John Stone (Thu Dec 11 2003 - 10:39:01 CST)
- Juan Alfredo Freites (Sat Dec 06 2003 - 23:16:38 CST)
remote_ctl.tcl: VMD's stdout -> socket ?
- Oliver Beckstein (Wed Feb 12 2003 - 17:22:38 CST)
- Justin Gullingsrud (Wed Feb 12 2003 - 16:46:36 CST)
- Justin Gullingsrud (Wed Feb 12 2003 - 16:43:19 CST)
- Oliver Beckstein (Wed Feb 12 2003 - 16:10:04 CST)
Remove PBC
- Peter Freddolino (Sun Dec 21 2008 - 21:30:56 CST)
- Alessandro.Maiorana_at_roma2.infn.it (Sun Dec 21 2008 - 04:09:38 CST)
remove water
- snoze pa (Wed Dec 23 2009 - 14:44:45 CST)
removed all proton in protein with vmd
- Nicolas SAPAY (Mon Jul 27 2009 - 03:36:38 CDT)
- albert albert (Mon Jul 27 2009 - 01:40:34 CDT)
removing all water molecules
- Salvatore Mario Cosseddu (Thu Jan 27 2011 - 10:27:32 CST)
- Dudo (Thu Jan 27 2011 - 09:41:49 CST)
- Salvatore Mario Cosseddu (Thu Jan 27 2011 - 09:14:40 CST)
- Axel Kohlmeyer (Thu Jan 27 2011 - 08:28:46 CST)
- Joshua Adelman (Thu Jan 27 2011 - 08:24:09 CST)
- Ajasja LjubetiÄ (Thu Jan 27 2011 - 07:37:57 CST)
- Axel Kohlmeyer (Thu Jan 27 2011 - 08:08:27 CST)
- Dudo (Thu Jan 27 2011 - 08:05:54 CST)
- Dudo (Thu Jan 27 2011 - 07:40:16 CST)
- ahmet yýldýrým (Thu Jan 27 2011 - 06:51:34 CST)
Removing perspective projection at startup
- Stéphane Teletchéa (Fri Mar 01 2002 - 03:12:43 CST)
- Justin Gullingsrud (Thu Feb 28 2002 - 11:19:35 CST)
- Alan Wilter Sousa da Silva (Thu Feb 28 2002 - 12:27:47 CST)
- John Stone (Thu Feb 28 2002 - 09:41:57 CST)
- Stéphane Teletchéa (Thu Feb 28 2002 - 07:11:37 CST)
removing residues/fragments from the system
- Streiff, John H. (Tue Feb 17 2004 - 10:15:37 CST)
- Kim, Kwiseon (Sun Feb 15 2004 - 09:09:07 CST)
- Satyavani Vemparala (Sat Feb 14 2004 - 21:00:02 CST)
removing structures from a psf&pdb
- Marcos Sotomayor (Mon Aug 28 2006 - 10:55:50 CDT)
- JC Gumbart (Mon Aug 28 2006 - 00:56:18 CDT)
- Thomas Caulfield (Fri Aug 25 2006 - 15:58:40 CDT)
removing surrounding water molecules
- p.w.fowler_at_qmul.ac.uk (Fri Feb 13 2004 - 17:04:08 CST)
- John Stone (Fri Feb 13 2004 - 17:40:24 CST)
- Kim, Kwiseon (Fri Feb 13 2004 - 16:51:33 CST)
- Brian Bennion (Fri Feb 13 2004 - 16:53:24 CST)
- Bamidele Adisa (Fri Feb 13 2004 - 16:03:15 CST)
removing unwanted residues
- Justin Gullingsrud (Thu Aug 31 2000 - 12:03:21 CDT)
- B. Bennion (Thu Aug 31 2000 - 11:57:00 CDT)
Removing water in tcl
- JC Gumbart (Fri Jan 05 2007 - 00:13:53 CST)
- John Stone (Thu Jan 04 2007 - 16:38:59 CST)
- Cesar Luis Avila (Thu Jan 04 2007 - 16:13:49 CST)
- nunolf_at_ci.uc.pt (Thu Jan 04 2007 - 11:03:59 CST)
- Cesar Luis Avila (Thu Jan 04 2007 - 10:23:15 CST)
removing water molecules
- John Stone (Mon Jun 04 2007 - 15:31:53 CDT)
- Atila Iamarino (Mon Jun 04 2007 - 13:21:33 CDT)
removing waters (gramicidin example)
- Charles McCallum (Thu Oct 27 2005 - 15:26:01 CDT)
- Charles McCallum (Thu Oct 27 2005 - 15:46:22 CDT)
- Charles McCallum (Thu Oct 27 2005 - 12:57:46 CDT)
Renaming Molecule Names in existing .xyz trajectory files
- John Stone (Tue Jul 04 2006 - 23:11:56 CDT)
- Adrian Koh (Tue Jul 04 2006 - 23:07:57 CDT)
- John Stone (Tue Jul 04 2006 - 22:37:09 CDT)
- Adrian Koh (Tue Jul 04 2006 - 01:44:28 CDT)
render
- John Stone (Thu Apr 03 2008 - 00:24:30 CDT)
- John Stone (Tue Apr 01 2008 - 14:14:12 CDT)
- Dongsheng Zhang (Tue Apr 01 2008 - 14:22:17 CDT)
- Dongsheng Zhang (Mon Mar 31 2008 - 15:51:35 CDT)
render "color by volume"
- Axel Kohlmeyer (Tue Jun 17 2008 - 18:34:28 CDT)
- Nicolas Sapay (Tue Jun 17 2008 - 17:11:45 CDT)
- Axel Kohlmeyer (Tue Jun 17 2008 - 14:51:28 CDT)
- Gerald Mathias (Tue Jun 17 2008 - 13:27:15 CDT)
Render alpha-carbon trace as cartoon
- John Stone (Fri Feb 06 2009 - 12:23:33 CST)
- Patrick Buck (Thu Feb 05 2009 - 13:57:54 CST)
Render command not executed
- Nicolas SAPAY (Wed Aug 19 2009 - 04:59:45 CDT)
- Axel Kohlmeyer (Wed Aug 19 2009 - 04:30:36 CDT)
- Nicolas SAPAY (Wed Aug 19 2009 - 02:22:18 CDT)
RENDER ISSUES
- JC Gumbart (Thu Jun 07 2007 - 09:07:34 CDT)
- Claire Zerafa (Thu Jun 07 2007 - 08:48:17 CDT)
render question
- John Stone (Fri Jun 17 2005 - 17:42:27 CDT)
- Samuel Flores (Fri Jun 17 2005 - 10:43:49 CDT)
Render Snapshot from the Tcl console (jpg gif format)
- Arneh Babakhani (Sun Dec 02 2007 - 23:24:35 CST)
- John Stone (Sun Dec 02 2007 - 21:19:51 CST)
- Arneh Babakhani (Sun Dec 02 2007 - 20:57:41 CST)
- Axel Kohlmeyer (Sun Dec 02 2007 - 20:34:21 CST)
- Arneh Babakhani (Sun Dec 02 2007 - 20:45:38 CST)
- John Stone (Sun Dec 02 2007 - 19:53:20 CST)
- Arneh Babakhani (Sun Dec 02 2007 - 18:31:17 CST)
- L. Michel Espinoza-Fonseca (Sun Dec 02 2007 - 17:59:55 CST)
- L. Michel Espinoza-Fonseca (Sun Dec 02 2007 - 17:58:31 CST)
- Arneh Babakhani (Sun Dec 02 2007 - 15:02:52 CST)
Render surface colored by electrostatic potential
- Axel Kohlmeyer (Tue Oct 28 2008 - 14:03:47 CDT)
- Adam Kraut (Tue Oct 28 2008 - 13:27:52 CDT)
render text in VMD with Tachyon
- John Stone (Thu Feb 23 2006 - 12:39:51 CST)
- Vlad Cojocaru (Thu Feb 23 2006 - 09:07:54 CST)
render to png, and ppm
- Brad Noyes (Sun Jul 13 2003 - 20:47:15 CDT)
Render to Tachyon Internal in a Tcl script
- Eduard Schreiner (Thu Jun 16 2005 - 01:41:30 CDT)
- Yalini (Tue Jun 14 2005 - 19:52:56 CDT)
Rendering
- John Stone (Thu Jul 29 2004 - 17:54:11 CDT)
- Harindar Keer (Thu Jul 29 2004 - 17:49:51 CDT)
Rendering .dat files created from Movie Maker using Tachyon
- John Stone (Tue Nov 16 2010 - 23:43:17 CST)
- Eduard Schreiner (Tue Nov 16 2010 - 23:39:58 CST)
- Truc Kim (Tue Nov 16 2010 - 22:53:54 CST)
- Eduard Schreiner (Tue Nov 16 2010 - 11:25:07 CST)
- Axel Kohlmeyer (Tue Nov 16 2010 - 10:43:38 CST)
- Truc Kim (Tue Nov 16 2010 - 06:34:12 CST)
Rendering electrostatic surface potentials using Tachyon
- John Stone (Fri Apr 10 2009 - 10:22:45 CDT)
- JT (Thu Apr 09 2009 - 15:14:41 CDT)
- John Stone (Thu May 01 2008 - 21:56:13 CDT)
- Jason Winget (Thu May 01 2008 - 15:39:31 CDT)
rendering from VMD
- B. Bennion (Tue Dec 17 2002 - 15:56:45 CST)
- Marcela Madrid (Tue Dec 17 2002 - 15:53:41 CST)
- B. Bennion (Tue Dec 17 2002 - 14:36:07 CST)
- Marcela Madrid (Tue Dec 17 2002 - 13:58:57 CST)
rendering high resolution images
- John Stone (Mon Apr 24 2006 - 16:30:38 CDT)
- Al Courey (Mon Apr 24 2006 - 16:19:52 CDT)
Rendering Labels with Tachyon
- Axel Kohlmeyer (Thu Apr 24 2008 - 17:29:10 CDT)
- Leonardo Trabuco (Thu Apr 24 2008 - 18:13:06 CDT)
- Anthony Ivetac (Thu Apr 24 2008 - 17:43:08 CDT)
- Axel Kohlmeyer (Thu Apr 24 2008 - 14:45:02 CDT)
- Anthony Ivetac (Thu Apr 24 2008 - 11:58:52 CDT)
- John Stone (Wed Apr 23 2008 - 19:36:49 CDT)
- Anthony Ivetac (Wed Apr 23 2008 - 18:18:33 CDT)
Rendering long and high-quality movies from VMD
- Bjoern Olausson (Wed Dec 07 2011 - 10:58:01 CST)
- Axel Kohlmeyer (Sun Dec 04 2011 - 23:19:35 CST)
- Axel Kohlmeyer (Sun Dec 04 2011 - 23:27:48 CST)
- David Cohen-Tanugi (Sun Dec 04 2011 - 21:35:40 CST)
Rendering of screen/display different
- John Stone (Tue Apr 27 2004 - 00:26:28 CDT)
- Dallas Warren (Mon Apr 26 2004 - 20:45:57 CDT)
- Dallas Warren (Mon Apr 26 2004 - 20:28:14 CDT)
- John Stone (Mon Apr 26 2004 - 11:58:41 CDT)
- Dallas Warren (Sun Apr 25 2004 - 16:11:12 CDT)
- John Stone (Fri Apr 23 2004 - 10:53:51 CDT)
- Dallas Warren (Thu Apr 22 2004 - 17:21:36 CDT)
- John Stone (Thu Apr 22 2004 - 15:59:02 CDT)
- Dallas Warren (Wed Apr 21 2004 - 16:40:10 CDT)
- John Stone (Wed Apr 21 2004 - 10:51:57 CDT)
- Eamon Caddigan (Wed Apr 21 2004 - 10:24:16 CDT)
- Dallas Warren (Wed Apr 21 2004 - 00:36:56 CDT)
- Dallas Warren (Wed Apr 21 2004 - 00:36:12 CDT)
Rendering polyhedra with POV-Ray
- John Stone (Tue Aug 18 2009 - 10:59:37 CDT)
- Nicolas Sapay (Tue Aug 18 2009 - 11:11:35 CDT)
- Nicolas Sapay (Tue Aug 18 2009 - 10:54:44 CDT)
- John Stone (Tue Aug 18 2009 - 10:23:05 CDT)
- Nicolas SAPAY (Tue Aug 18 2009 - 09:53:10 CDT)
Rendering problem
- John Stone (Fri Sep 12 2008 - 11:27:01 CDT)
- Axel Kohlmeyer (Fri Sep 12 2008 - 01:25:43 CDT)
- lillestolen (Thu Sep 11 2008 - 14:16:29 CDT)
rendering problems
- Claire Zerafa (Thu Jun 07 2007 - 09:37:13 CDT)
- John Stone (Tue Oct 11 2005 - 20:12:57 CDT)
- Turman, Cheri M (Tue Oct 11 2005 - 11:51:37 CDT)
rendering question
- Axel Kohlmeyer (Thu Jan 19 2012 - 11:55:22 CST)
- John Stone (Thu Jan 19 2012 - 11:31:20 CST)
- Alex Angerhofer (Thu Jan 19 2012 - 10:56:59 CST)
Rendering surfaces from PLT files
- John Stone (Tue Jul 25 2006 - 12:41:53 CDT)
- Sergio Urahata (Mon Jul 24 2006 - 12:21:32 CDT)
- John Stone (Mon Jul 24 2006 - 11:56:51 CDT)
- Axel Kohlmeyer (Mon Jul 24 2006 - 11:43:42 CDT)
- Sergio Urahata (Mon Jul 24 2006 - 11:28:07 CDT)
- Axel Kohlmeyer (Sun Jul 23 2006 - 00:30:08 CDT)
- Sergio Urahata (Sat Jul 22 2006 - 16:50:02 CDT)
rendering time bars or other vmd added graphics with povray
- John Stone (Mon Feb 05 2007 - 15:17:08 CST)
- Vlad Cojocaru (Mon Feb 05 2007 - 11:31:50 CST)
- Alexandr Isayev (Mon Feb 05 2007 - 11:23:12 CST)
- Vlad Cojocaru (Mon Feb 05 2007 - 10:58:48 CST)
rendering transparent objects
- Ivan Degtyarenko (Wed Aug 16 2006 - 16:50:44 CDT)
- Ivan Degtyarenko (Wed Aug 16 2006 - 16:32:57 CDT)
- John Stone (Wed Aug 16 2006 - 15:43:57 CDT)
- Ivan Degtyarenko (Wed Aug 16 2006 - 15:34:35 CDT)
rendering.....
- Axel Kohlmeyer (Mon Jul 31 2006 - 17:58:57 CDT)
- Viswanadham Sridhara (Mon Jul 31 2006 - 17:41:26 CDT)
- John Stone (Mon Jul 31 2006 - 17:39:15 CDT)
- Viswanadham Sridhara (Mon Jul 31 2006 - 14:39:51 CDT)
renderman output?
- Axel Kohlmeyer (Wed May 10 2006 - 19:37:19 CDT)
- Ralph Jimenez (Wed May 10 2006 - 15:50:47 CDT)
rending softwares for win98
- John Stone (Fri Nov 17 2000 - 01:42:17 CST)
- Eric Hu (Thu Nov 16 2000 - 17:26:20 CST)
Rending to png format using tachyon or otherwise ?
- Axel Kohlmeyer (Wed Jun 09 2010 - 13:08:57 CDT)
- maria goranovic (Wed Jun 09 2010 - 11:18:13 CDT)
- maria goranovic (Wed Jun 09 2010 - 09:33:25 CDT)
- John Stone (Wed Jun 09 2010 - 10:06:06 CDT)
renumbering residues
- John Stone (Wed Aug 13 2008 - 18:00:59 CDT)
- Roman Petrenko (Wed Aug 13 2008 - 13:50:44 CDT)
renumbering residues after deletion of atoms
- Axel Kohlmeyer (Thu Jan 18 2007 - 11:51:48 CST)
- Himanshu Khandelia (Thu Jan 18 2007 - 09:55:07 CST)
repitition of residue numbers in LIPIDS
- Satyavani Vemparala (Tue Feb 17 2004 - 16:48:51 CST)
- Jim Phillips (Tue Feb 17 2004 - 17:14:42 CST)
- Jim Phillips (Mon Feb 16 2004 - 17:55:50 CST)
- John Stone (Mon Feb 16 2004 - 17:45:08 CST)
- Satyavani Vemparala (Mon Feb 16 2004 - 15:18:49 CST)
replace molecule?
- Axel Kohlmeyer (Wed Jan 16 2008 - 11:02:32 CST)
- Lucie Huynh (Wed Jan 16 2008 - 03:09:39 CST)
Replacing DPPC with DPPS
- JC Gumbart (Mon Aug 22 2005 - 00:32:39 CDT)
- Viswanadham Sridhara (Sun Aug 21 2005 - 12:24:54 CDT)
Replica Exchange
- Olaf Lenz (Fri Apr 15 2011 - 04:18:17 CDT)
- alamng_at_uci.edu (Fri Apr 15 2011 - 02:35:05 CDT)
Replica exchange molecular dynamics (REMD)
- Peter Freddolino (Tue Mar 20 2007 - 22:02:58 CDT)
- Arindam Ganguly (Tue Mar 20 2007 - 21:22:15 CDT)
Replica watch is a perfect gift
- Christian Courtney (Sun Apr 27 2008 - 04:18:34 CDT)
- Murray Dyer (Sat Apr 26 2008 - 17:18:11 CDT)
- Deanna Fleming (Thu Apr 17 2008 - 05:25:56 CDT)
Replica watches make great gifts
- Edwina Grove (Sun May 04 2008 - 01:24:11 CDT)
replication of bilayer
- Richard Swenson (Fri Jan 04 2008 - 17:07:16 CST)
- John Stone (Fri Jan 04 2008 - 12:42:10 CST)
- Chanda.Jnanojjal_at_edam.uhp-nancy.fr (Wed Dec 26 2007 - 04:08:00 CST)
reply
- John Stone (Sat Jan 02 2010 - 08:53:01 CST)
- Prathit Chatterjee (Sat Jan 02 2010 - 05:33:04 CST)
reporting various NVidia driver bugs...
- John Stone (Thu May 18 2006 - 16:14:43 CDT)
Represent custom peptide as ribbon?
- Casey Johnson (Sat Aug 27 2011 - 09:24:07 CDT)
represent water molecules
- oguz gurbulak (Tue Jan 03 2012 - 03:09:43 CST)
- oguz gurbulak (Mon Jan 02 2012 - 13:07:45 CST)
- Axel Kohlmeyer (Mon Jan 02 2012 - 13:19:41 CST)
- Axel Kohlmeyer (Mon Jan 02 2012 - 11:42:41 CST)
- Dudo (Mon Jan 02 2012 - 08:49:57 CST)
- oguz gurbulak (Mon Jan 02 2012 - 05:48:41 CST)
representation ColorID in Tcl
- Axel Kohlmeyer (Wed Nov 19 2008 - 12:24:51 CST)
- Peter Freddolino (Wed Nov 19 2008 - 12:16:07 CST)
- David Tanner (Wed Nov 19 2008 - 11:25:42 CST)
Representation problem
- Ahmet Bakan (Thu Oct 15 2009 - 12:16:26 CDT)
- John Stone (Tue Sep 29 2009 - 17:38:21 CDT)
- Ahmet Bakan (Tue Sep 29 2009 - 09:42:41 CDT)
- John Stone (Mon Sep 28 2009 - 16:34:18 CDT)
- Ahmet Bakan (Mon Sep 28 2009 - 16:22:36 CDT)
representation question
- Axel Kohlmeyer (Mon Apr 26 2010 - 15:09:17 CDT)
- Joseph Bylund (Mon Apr 26 2010 - 14:01:40 CDT)
representation selection funnies
- John Stone (Wed Mar 28 2007 - 22:25:26 CDT)
- John Stone (Tue Mar 27 2007 - 14:25:01 CDT)
- Fred Moore (Tue Mar 27 2007 - 14:06:21 CDT)
representation using COM
- John Stone (Fri Feb 24 2006 - 13:56:40 CST)
- Anthony Cruz (Fri Feb 24 2006 - 16:53:27 CST)
representation_problem
- John Stone (Thu Apr 21 2005 - 16:40:07 CDT)
- Chang, Christopher (Wed Apr 20 2005 - 16:34:14 CDT)
- Wei Chen (Wed Apr 20 2005 - 14:21:21 CDT)
Representing disulfide bonds when using psfgen
- Paul R Brenner (Thu Jul 21 2005 - 13:26:53 CDT)
- Wei Chen (Thu Jul 21 2005 - 12:48:58 CDT)
- Chang, Christopher (Thu Jul 21 2005 - 12:39:06 CDT)
- Paul R Brenner (Thu Jul 21 2005 - 11:15:30 CDT)
request ability to append in CatDCD (and NAMD)
- John Stone (Fri Aug 08 2008 - 14:45:52 CDT)
- Andrew Jewett (Fri Aug 08 2008 - 14:15:46 CDT)
Request for change in gaussian cube reader
- Axel Kohlmeyer (Tue May 19 2009 - 14:32:10 CDT)
- Xavier Cartoixa Soler (Tue May 19 2009 - 13:40:37 CDT)
Request for information
- Rich Cook (Thu Dec 17 2009 - 13:58:45 CST)
- John Stone (Thu Dec 17 2009 - 13:29:52 CST)
request help about hbond
- hamid mosaddeghi (Mon Mar 07 2011 - 13:20:13 CST)
- hamid mosaddeghi (Mon Mar 07 2011 - 09:06:20 CST)
request to know about bonds in between carbon atoms in carbon nanotubes
- safron saif (Fri Apr 29 2011 - 03:54:53 CDT)
Required Assistance for VMD
- John Stone (Sun Apr 18 2004 - 12:19:19 CDT)
- zaheer qasmi (Sat Apr 17 2004 - 09:16:34 CDT)
Res: Res: webpdb load problem
- tiago sobreira (Mon Apr 18 2011 - 10:00:13 CDT)
RES: uNABLE TO OPEN VMD ON WINDOWS 2K
- John Stone (Thu Feb 01 2007 - 11:05:32 CST)
- Caio Julio Martins Veloso (Thu Feb 01 2007 - 06:54:03 CST)
Res: webpdb load problem
- John Stone (Fri Apr 15 2011 - 15:51:38 CDT)
ResdueType and hydrophobicity scale
- Andrew Dalke (Wed Jul 16 2008 - 05:45:13 CDT)
- John Stone (Wed Jul 16 2008 - 02:47:41 CDT)
- Giovanni Bellesia (Wed Jul 16 2008 - 02:13:46 CDT)
- John Stone (Wed Jul 16 2008 - 01:59:34 CDT)
- Giovanni Bellesia (Wed Jul 02 2008 - 18:16:29 CDT)
Research Position Openings
- Mike Smith (Sun Feb 18 2007 - 03:45:19 CST)
resid color
- John Stone (Wed Apr 03 2002 - 12:40:29 CST)
- Peter VARNAI (Wed Apr 03 2002 - 12:00:09 CST)
resid le 250
- John Stone (Mon Mar 28 2005 - 13:08:57 CST)
- Haibo Yu (Wed Mar 23 2005 - 16:22:15 CST)
resid of water that is hydrogen bonded
- Axel Kohlmeyer (Mon Aug 25 2008 - 14:56:41 CDT)
- nahren manuel (Mon Aug 25 2008 - 07:35:22 CDT)
residence time
- John Stone (Wed Mar 24 2004 - 16:01:07 CST)
- Ioana Cozmuta (Tue Mar 23 2004 - 21:51:10 CST)
residue based CG model
- Anton Arkhipov (Fri Jul 10 2009 - 10:47:00 CDT)
- Xiang Yu (Fri Jul 10 2009 - 09:20:42 CDT)
Residue highlighting in MD Traj
- Nuno Loureiro Ferreira (Fri Sep 28 2007 - 03:45:32 CDT)
- Nuno Loureiro Ferreira (Wed Sep 19 2007 - 05:05:01 CDT)
- M kutty (Wed Sep 19 2007 - 03:15:09 CDT)
residue index problem
- John Stone (Wed Jun 24 2009 - 16:40:44 CDT)
- Jianhui Tian (Wed Jun 24 2009 - 15:51:54 CDT)
residue labels in vmd
- John Stone (Thu Mar 06 2003 - 10:05:37 CST)
- Jim Caldwell (Wed Mar 05 2003 - 18:59:03 CST)
residue list of within ? distance
- John Stone (Thu Jul 06 2006 - 16:52:59 CDT)
- Ting Wang (Thu Jul 06 2006 - 16:46:44 CDT)
residue missed by psfgen
- Peter Freddolino (Mon Aug 20 2007 - 16:48:00 CDT)
- Daniel Kennedy (Mon Aug 20 2007 - 12:09:05 CDT)
residue no. greater than 9999 in pdb files created with VMD
- Vlad Cojocaru (Thu Jul 13 2006 - 03:57:28 CDT)
- Axel Kohlmeyer (Wed Jul 12 2006 - 11:42:42 CDT)
- JC Gumbart (Wed Jul 12 2006 - 11:24:34 CDT)
- John Stone (Wed Jul 12 2006 - 11:16:21 CDT)
- Vlad Cojocaru (Wed Jul 12 2006 - 10:56:16 CDT)
Residue Number Assignment by VMD
- John Stone (Fri May 28 2010 - 13:32:38 CDT)
- Axel Kohlmeyer (Fri May 28 2010 - 08:24:45 CDT)
- Sally Fisher (Fri May 28 2010 - 07:29:55 CDT)
Residue Number Assignment by VMD: RESID vs RESIDUE
- Thomas C. Bishop (Fri May 28 2010 - 10:47:05 CDT)
residue numbering TCL versus PDB
- Axel Kohlmeyer (Fri Jul 29 2005 - 02:13:59 CDT)
- Axel Kohlmeyer (Wed Jul 27 2005 - 07:36:48 CDT)
- ioana_at_pegasus.arc.nasa.gov (Tue Jul 26 2005 - 20:32:08 CDT)
Residue Ordering in Sequence Viewer/MultiSeq
- Sally Fisher (Wed May 26 2010 - 10:15:20 CDT)
Residue replacement question
- fouchni_at_uni-osnabrueck.de (Wed Feb 20 2008 - 04:15:33 CST)
Residue replacement question]
- Axel Kohlmeyer (Sat Feb 23 2008 - 17:29:35 CST)
- fouchni_at_uni-osnabrueck.de (Fri Feb 22 2008 - 04:20:04 CST)
residue rotation within single pdb file
- Justin Gullingsrud (Sun Jul 07 2002 - 11:21:13 CDT)
- B. Bennion (Sun Jul 07 2002 - 02:27:32 CDT)
residue selection
- Peter Freddolino (Fri Oct 12 2007 - 14:24:18 CDT)
- Giovanni Bellesia (Fri Oct 12 2007 - 14:28:29 CDT)
- Peter Freddolino (Fri Oct 12 2007 - 14:27:49 CDT)
- Giovanni Bellesia (Fri Oct 12 2007 - 14:19:32 CDT)
residue selection (water molecule within 5 ang. to protein in simulation)
- John Stone (Tue Oct 16 2007 - 10:57:29 CDT)
- kinshuk_at_chem.iitb.ac.in (Mon Oct 15 2007 - 23:54:21 CDT)
- Neelanjana Sengupta (Sun Oct 14 2007 - 08:05:40 CDT)
- kinshuk_at_chem.iitb.ac.in (Sun Oct 14 2007 - 02:21:32 CDT)
residue selection: conflict between resid and residue
- Axel Kohlmeyer (Fri Sep 21 2007 - 17:08:32 CDT)
- Nicolas Sapay (Fri Sep 21 2007 - 16:04:56 CDT)
- John Stone (Fri Sep 21 2007 - 15:24:04 CDT)
- Nicolas Sapay (Fri Sep 21 2007 - 15:14:23 CDT)
- Axel Kohlmeyer (Fri Sep 21 2007 - 13:15:29 CDT)
- Nicolas Sapay (Fri Sep 21 2007 - 13:22:45 CDT)
residue-residue distances and atom selection bug
- Andrew Dalke (Tue Jun 10 1997 - 13:05:11 CDT)
residue_rmsd.tcl
- Irene Newhouse (Thu Jul 26 2007 - 16:29:55 CDT)
- Irene Newhouse (Thu Jul 26 2007 - 16:17:46 CDT)
- John Stone (Thu Jul 26 2007 - 16:20:50 CDT)
- Irene Newhouse (Thu Jul 26 2007 - 12:37:51 CDT)
- John Stone (Thu Jul 26 2007 - 12:42:11 CDT)
Resize window from TCL
- Ondrej Marsalek (Mon Sep 21 2009 - 12:52:02 CDT)
- John Stone (Mon Sep 21 2009 - 12:48:08 CDT)
- Axel Kohlmeyer (Mon Sep 21 2009 - 13:08:14 CDT)
- Ondrej Marsalek (Mon Sep 21 2009 - 11:51:46 CDT)
resolution for previous message
- sjcav_at_aros.net (Wed Jul 03 2002 - 05:30:00 CDT)
Resolution of movie?
- John Stone (Tue Mar 26 2002 - 18:00:20 CST)
- Troy Wymore (Tue Mar 26 2002 - 17:02:43 CST)
resolution screen in Linux
- andrea spitaleri (Mon Apr 28 2008 - 02:54:15 CDT)
- John Stone (Thu Apr 24 2008 - 08:46:50 CDT)
- Axel Kohlmeyer (Thu Apr 24 2008 - 08:15:59 CDT)
- andrea spitaleri (Thu Apr 24 2008 - 07:33:24 CDT)
resolving side chain clashes
- jayant_jacques (Thu Dec 13 2007 - 14:05:10 CST)
Resonable visualisation of the molecules inside the periodic box ?
- Marek Maly (Fri Apr 16 2010 - 09:59:50 CDT)
restart simulation with NAMD
- Nuno R. L. Ferreira (Thu Feb 23 2006 - 05:02:23 CST)
- lily jin (Wed Feb 22 2006 - 14:01:30 CST)
Restarting a simulation $ Langevin
- John Stone (Sat Sep 20 2008 - 02:20:34 CDT)
- Anirban Ghosh (Fri Sep 19 2008 - 07:17:12 CDT)
Restraints on coarse grained model
- Francesco Pietra (Wed Dec 09 2009 - 12:49:28 CST)
- BIN ZHANG (Wed Dec 09 2009 - 13:01:58 CST)
- BIN ZHANG (Wed Dec 09 2009 - 12:07:37 CST)
- Anton Arkhipov (Wed Dec 09 2009 - 10:58:56 CST)
- Francesco Pietra (Tue Dec 08 2009 - 13:23:59 CST)
ResType Color
- Seiichiro Tanizaki (Thu Mar 03 2005 - 14:49:39 CST)
Retrieving an atom and its coordinates
- Roman Petrenko (Sat Feb 13 2010 - 20:14:34 CST)
- Axel Kohlmeyer (Sat Feb 13 2010 - 17:20:59 CST)
- Marc Charendoff (Sat Feb 13 2010 - 16:19:50 CST)
- Schreiner Eduard (Sat Feb 13 2010 - 16:35:39 CST)
retrieving atom indexes from measure contacts
- Leonardo Trabuco (Tue Jan 05 2010 - 20:16:54 CST)
- Sunita Patel (Tue Jan 05 2010 - 19:56:22 CST)
Retrieving Cremer-Pople parameters
- Payne, Christy (Tue Jul 12 2011 - 10:31:26 CDT)
- Payne, Christy (Tue Jul 12 2011 - 10:32:24 CDT)
- John Stone (Tue Jul 12 2011 - 09:13:36 CDT)
- Axel Kohlmeyer (Tue Jul 12 2011 - 09:03:56 CDT)
- Mr Bernard Ramos (Tue Jul 12 2011 - 07:40:05 CDT)
retrieving the center of mass for each frame of trajectory
- John Stone (Wed Oct 18 2006 - 12:58:30 CDT)
- Vlad Cojocaru (Wed Oct 18 2006 - 12:35:14 CDT)
Retrieving the Cremer-Pople parameters
- Nicolas Sapay (Mon Jun 07 2010 - 04:05:01 CDT)
- John Stone (Fri Jun 04 2010 - 17:03:59 CDT)
- Nicolas Sapay (Fri Jun 04 2010 - 03:46:30 CDT)
Return value of a vector
- Stephanie Held (Mon Sep 28 2009 - 09:57:08 CDT)
- Axel Kohlmeyer (Mon Sep 28 2009 - 09:35:25 CDT)
- Stephanie Held (Mon Sep 28 2009 - 08:39:27 CDT)
Reverse Mapping of RBCG Model
- Peter Freddolino (Thu Mar 31 2011 - 21:46:14 CDT)
- Peter Freddolino (Thu Mar 31 2011 - 21:44:25 CDT)
- Vlad Cojocaru (Thu Mar 31 2011 - 12:39:17 CDT)
- Peter Freddolino (Thu Mar 31 2011 - 11:10:35 CDT)
- Sibel Cakan (Wed Mar 30 2011 - 07:39:51 CDT)
revised VMD tutorial
- Christoph Weber (Fri Jul 14 2006 - 19:03:44 CDT)
RE : plot residues without hydrogen atoms
- ABEL Stephane 175950 (Tue May 20 2008 - 11:11:46 CDT)
RE : Plot the value of the current frame in the Progress Bar for elapsed Time
- ABEL Stephane 175950 (Thu Dec 02 2010 - 12:15:22 CST)
RE : use gelato render with VMD 1.8.7 for movie
- ABEL Stephane 175950 (Fri Dec 03 2010 - 12:18:26 CST)
RE Q?= use gelato render with VMD 1.8.7 for movie
- John Stone (Fri Dec 03 2010 - 14:17:31 CST)
rgb to mpg
- John Stone (Thu Aug 14 2003 - 22:01:08 CDT)
- Ioana Cozmuta (Mon Aug 11 2003 - 13:31:44 CDT)
- John Stone (Mon Aug 11 2003 - 10:50:42 CDT)
- Ioana Cozmuta (Fri Aug 08 2003 - 18:56:30 CDT)
- John Stone (Fri Aug 08 2003 - 18:34:46 CDT)
- Ioana Cozmuta (Fri Aug 08 2003 - 18:20:49 CDT)
RGB values...
- John Stone (Sat Jul 03 2010 - 09:12:35 CDT)
- Robert Brunner (Fri Jul 02 2010 - 11:07:06 CDT)
- Luis Guillermo Cota Preciado (Thu Jul 01 2010 - 18:10:10 CDT)
rgyr calculation problem
- Jérôme Hénin (Fri Nov 19 2010 - 15:08:10 CST)
- Axel Kohlmeyer (Fri Nov 19 2010 - 13:35:45 CST)
- Branko (Fri Nov 19 2010 - 12:44:50 CST)
- Branko (Wed Nov 10 2010 - 13:04:31 CST)
- Axel Kohlmeyer (Wed Nov 10 2010 - 12:40:40 CST)
- Branko (Wed Nov 10 2010 - 11:50:30 CST)
- Axel Kohlmeyer (Wed Nov 10 2010 - 11:12:06 CST)
- Branko (Wed Nov 10 2010 - 11:06:22 CST)
- Axel Kohlmeyer (Fri Nov 05 2010 - 17:09:31 CDT)
- Branko (Fri Nov 05 2010 - 16:21:05 CDT)
ribbon representation
- John Stone (Fri Oct 17 2003 - 18:14:17 CDT)
- Darui Xu (Fri Oct 17 2003 - 11:28:31 CDT)
ribbon representation :: VRML
- John Stone (Tue Oct 21 2003 - 15:43:26 CDT)
ribbons representation for RNA in vmd 1.8.5
- John Stone (Mon Nov 06 2006 - 17:26:32 CST)
- John Stone (Wed Sep 20 2006 - 13:56:33 CDT)
- Vlad Cojocaru (Wed Sep 20 2006 - 09:06:43 CDT)
right alignment for numbers in color bar
- John Stone (Sat Aug 12 2006 - 03:42:53 CDT)
- John Stone (Sat Aug 12 2006 - 00:15:58 CDT)
- John Stone (Fri Aug 11 2006 - 23:15:27 CDT)
- Yongcheng Zhou (Fri Aug 11 2006 - 18:38:38 CDT)
rlwrap bug in Ubuntu
- Axel Kohlmeyer (Sun Mar 15 2009 - 15:14:45 CDT)
- John Stone (Sun Mar 15 2009 - 14:20:26 CDT)
- Axel Kohlmeyer (Sun Mar 15 2009 - 09:32:49 CDT)
- John Stone (Sun Mar 15 2009 - 09:32:06 CDT)
- Thomas Evangelidis (Sun Mar 15 2009 - 01:11:30 CDT)
rlwrap problem on
- Cun Zhang (Thu Nov 24 2011 - 07:07:11 CST)
- Pablo De Biase (Tue Nov 22 2011 - 13:38:58 CST)
- John Stone (Fri Nov 11 2011 - 09:26:24 CST)
- sajad falsafi (Wed Nov 09 2011 - 02:53:43 CST)
- Frank Barry (Tue Nov 08 2011 - 14:34:21 CST)
- Gianluca Interlandi (Tue Nov 01 2011 - 14:15:49 CDT)
- Gianluca Interlandi (Tue Nov 01 2011 - 14:14:51 CDT)
- Joshua A. Anderson (Tue Nov 01 2011 - 13:46:10 CDT)
- Frank Barry (Tue Nov 01 2011 - 10:50:26 CDT)
rms and align strucs
- Peter Freddolino (Wed Apr 19 2006 - 12:02:46 CDT)
- andrea spitaleri (Wed Apr 19 2006 - 06:05:50 CDT)
rms dumping in a file
- John Stone (Mon Oct 28 2002 - 10:34:44 CST)
- Vlad Cojocaru (Mon Oct 28 2002 - 05:16:41 CST)
RMS fits
- Dean Johnson (Fri Oct 18 2002 - 23:04:11 CDT)
- Tara Sprules (Wed Oct 16 2002 - 17:34:09 CDT)
rms fitting problem
- Peter Freddolino (Wed May 02 2007 - 20:21:47 CDT)
- Myunggi Yi (Wed May 02 2007 - 16:34:04 CDT)
RMSD
- Alexander Balaeff (Sun Mar 18 2012 - 12:59:28 CDT)
- John Stone (Sun Mar 18 2012 - 12:26:39 CDT)
- George Tzotzos (Sun Mar 18 2012 - 06:47:36 CDT)
- Eduard Schreiner (Tue Nov 02 2010 - 13:01:09 CDT)
- divya nayar (Tue Nov 02 2010 - 11:53:26 CDT)
- John Stone (Tue Aug 19 2008 - 01:02:57 CDT)
- Shadi Mirzae (Mon Aug 11 2008 - 13:52:14 CDT)
- Anuradha Mittal (Wed Apr 12 2006 - 09:24:45 CDT)
- Peter Freddolino (Tue Apr 11 2006 - 13:57:58 CDT)
- Anuradha Mittal (Tue Apr 11 2006 - 13:47:06 CDT)
- Luis Gracia (Wed Apr 06 2005 - 16:02:58 CDT)
- John Stone (Tue Apr 05 2005 - 17:17:10 CDT)
- Anuradha Mittal (Tue Apr 05 2005 - 11:24:28 CDT)
RMSD (Re-send of James Cavenaugh's bounced mail)
- John Stone (Tue Jun 25 2002 - 10:50:33 CDT)
rmsd and angle between the two domains
- Luis Rosales (Tue Apr 12 2005 - 23:51:55 CDT)
- venkataraman kabaleeswaran (Tue Apr 12 2005 - 12:31:42 CDT)
RMSD and PSF generation
- Hurt, Darrell (NIH/NIAID) [E] (Tue Dec 21 2010 - 11:18:00 CST)
- Bharat Kumar (Mon Dec 20 2010 - 21:29:48 CST)
RMSD between two structures without the same number of atoms
- Axel Kohlmeyer (Fri Apr 18 2008 - 09:20:29 CDT)
- Aurelie.DeLuca_at_sanofi-aventis.com (Fri Apr 18 2008 - 08:08:39 CDT)
RMSD calc
- Axel Kohlmeyer (Thu Mar 20 2008 - 05:37:31 CDT)
- SENTHIL KUMAR (Thu Mar 20 2008 - 01:11:02 CDT)
RMSD calculation
- Luis Gracia (Mon Apr 25 2005 - 19:29:21 CDT)
- Simon Whitehead (Mon Apr 25 2005 - 06:17:35 CDT)
rmsd calculation and alignment
- lug2002_at_med.cornell.edu (Tue Sep 28 2004 - 11:27:10 CDT)
- mashaojie163 (Tue Sep 28 2004 - 10:46:15 CDT)
- bora erdemli (Tue Sep 28 2004 - 07:28:15 CDT)
rmsd calculation and plot
- sarah k (Tue Nov 10 2009 - 23:20:06 CST)
- John Stone (Tue Nov 10 2009 - 16:25:00 CST)
- sarah k (Tue Nov 03 2009 - 23:18:29 CST)
rmsd calculation for RNA
- Moumita Maiti (Fri Jun 08 2007 - 11:48:58 CDT)
RMSD calculation/fit doesn't work?
- Timm Essigke (Tue Aug 15 2000 - 07:47:51 CDT)
- John Stone (Mon Aug 14 2000 - 18:58:34 CDT)
- Timm Essigke (Thu Aug 03 2000 - 13:17:18 CDT)
RMSD Calculator
- Luis Gracia (Thu Jun 08 2006 - 12:56:02 CDT)
- Tamal Banerjee (Thu Jun 08 2006 - 08:37:43 CDT)
RMSD calculator extension
- Axel Kohlmeyer (Tue Aug 23 2011 - 09:48:38 CDT)
- George Tzotzos (Tue Aug 23 2011 - 08:59:19 CDT)
rmsd computation in text mode with a reference pdb
- Leonardo Trabuco (Mon Mar 02 2009 - 01:42:38 CST)
- Monika Sharma (Mon Mar 02 2009 - 01:18:30 CST)
rmsd crashes vmd
- John Stone (Sat Nov 06 1999 - 00:17:28 CST)
- Kevin Sanbonmatsu (Thu Nov 04 1999 - 21:02:26 CST)
rmsd crashes vmd 1.3
- John Stone (Tue Nov 09 1999 - 21:59:58 CST)
rmsd different from rmsd implemented in VMD
- Thomas C. Bishop (Thu Feb 14 2008 - 08:19:08 CST)
- JC Gumbart (Wed Feb 13 2008 - 10:58:13 CST)
- Jorgen Simonsen (Wed Feb 13 2008 - 10:18:19 CST)
RMSD error "Matrix: Warning: no convergence"
- Maria Sanchez (Thu Nov 06 2008 - 09:16:20 CST)
rmsd fitting
- Luis Gracia (Tue Sep 12 2006 - 02:03:30 CDT)
- Myunggi Yi (Mon Sep 11 2006 - 20:30:13 CDT)
RMSD fitting for molecules adsorbed to surfaces
- Bob Johnson (Thu May 10 2007 - 16:12:09 CDT)
RMSD for individual residue for a tetarmer
- gurunath katagi (Wed Dec 09 2009 - 04:41:11 CST)
- John Stone (Wed Dec 09 2009 - 00:25:01 CST)
- gurunath katagi (Fri Dec 04 2009 - 00:20:03 CST)
RMSD for non-continous residues
- Srinivasan Madabushi (Fri Dec 17 2004 - 18:24:44 CST)
rmsd from VMD
- Tim Isgro (Mon Nov 24 2003 - 15:46:21 CST)
- Madhuri Agashe (Sun Nov 23 2003 - 13:34:32 CST)
RMSD heatmapper -plugin
- John Stone (Mon Sep 19 2011 - 14:03:52 CDT)
- Axel Kohlmeyer (Mon Sep 19 2011 - 12:49:40 CDT)
- Anssi Nurminen (Mon Sep 19 2011 - 12:03:51 CDT)
rmsd matrix
- Andres Morales N (Thu Sep 03 2009 - 15:00:30 CDT)
- Andres Morales N (Thu Sep 03 2009 - 07:45:06 CDT)
- John Stone (Tue Feb 03 2009 - 10:08:00 CST)
- Andres Morales N (Tue Feb 03 2009 - 10:01:28 CST)
- Wei Huang (Mon Feb 02 2009 - 11:08:40 CST)
- Andres Morales N (Mon Feb 02 2009 - 10:59:50 CST)
RMSD of a protein shell, from the NAMD traj
- John Stone (Sun Apr 26 2009 - 23:59:51 CDT)
- priyodorshi satpati (Sun Apr 12 2009 - 11:02:13 CDT)
RMSD of different molecules
- Leonardo Trabuco (Fri Jul 06 2007 - 10:10:10 CDT)
- Peter Freddolino (Fri Jul 06 2007 - 01:50:49 CDT)
- hori koshii (Thu Jul 05 2007 - 20:50:56 CDT)
RMSD of dihedrals
- Luis Gracia (Fri Sep 30 2005 - 15:07:22 CDT)
- Charles McCallum (Fri Sep 30 2005 - 09:14:55 CDT)
- Charles McCallum (Thu Sep 29 2005 - 15:58:07 CDT)
RMSD of identical pdbs not zero
- Robin Bush (Wed Sep 14 2005 - 07:50:56 CDT)
- Dan Wright (Tue Sep 13 2005 - 09:30:02 CDT)
- Robin Bush (Fri Sep 09 2005 - 12:57:24 CDT)
RMSD of not fitted region
- John Stone (Tue Jun 13 2006 - 11:17:07 CDT)
- Ting Wang (Mon Jun 12 2006 - 19:24:02 CDT)
rmsd option in timeline
- John Stone (Fri Jun 11 2004 - 09:20:50 CDT)
- Marta Murcia (Thu Jun 10 2004 - 12:19:54 CDT)
RMSD or RMSF value
- Anthony Cruz (Tue Dec 20 2005 - 13:17:32 CST)
rmsd per residue
- Alberto Sergio Garay (Tue Jul 01 2008 - 05:36:46 CDT)
- Eric H. Lee (Mon Jun 30 2008 - 14:42:18 CDT)
- Michal Kolinski (Mon Jun 30 2008 - 10:19:40 CDT)
rmsd problem
- John Stone (Tue Aug 31 2004 - 15:11:47 CDT)
- bora erdemli (Thu Aug 26 2004 - 14:10:05 CDT)
- John Stone (Mon Aug 19 2002 - 11:42:08 CDT)
- John Stone (Wed Aug 14 2002 - 11:35:17 CDT)
- Vlad Cojocaru (Wed Aug 14 2002 - 10:46:48 CDT)
RMSD problem on 1.8.4a22 (Linux OpenGL)
- Stéphane Teletchéa (Thu Dec 15 2005 - 11:59:52 CST)
- Dow Hurst DPHURST (Thu Dec 15 2005 - 09:15:09 CST)
- Stéphane Teletchéa (Thu Dec 15 2005 - 03:54:08 CST)
- John Stone (Wed Dec 14 2005 - 12:48:00 CST)
- Stéphane Teletchéa (Wed Dec 14 2005 - 06:05:11 CST)
rmsd problem,script and version
- bora erdemli (Fri Sep 03 2004 - 00:23:42 CDT)
RMSD Question
- Germain Salvato Vallverdu (Mon Nov 29 2010 - 02:56:05 CST)
- snoze pa (Sun Nov 28 2010 - 11:08:25 CST)
- L. Michel Espinoza-Fonseca (Wed Aug 17 2005 - 06:44:24 CDT)
- Luis Gracia (Tue Aug 16 2005 - 20:20:00 CDT)
- Giovanni Bellesia (Wed Aug 17 2005 - 06:04:38 CDT)
- Jerry Parks (Tue Aug 16 2005 - 17:08:59 CDT)
RMSD SCRIPT
- John Stone (Tue Aug 19 2008 - 01:01:07 CDT)
- Semorale (Fri Aug 15 2008 - 05:12:11 CDT)
Rmsd script with arguments
- Mustafa Tekpinar (Wed Feb 01 2012 - 13:38:34 CST)
- Axel Kohlmeyer (Tue Jan 31 2012 - 15:55:06 CST)
- Mustafa Tekpinar (Tue Jan 31 2012 - 13:48:40 CST)
RMSD Tool failes with MOL ID > 999
- Bjoern Olausson (Tue Nov 15 2011 - 02:38:34 CST)
- John Stone (Fri Nov 11 2011 - 09:48:57 CST)
- Bjoern Olausson (Fri Nov 11 2011 - 05:52:11 CST)
RMSD trajectory tool
- Parisa Akhski (Fri Aug 27 2010 - 15:22:03 CDT)
- John Stone (Fri Aug 27 2010 - 14:32:05 CDT)
- Parisa Akhski (Fri Aug 27 2010 - 13:06:40 CDT)
- Thomas C Bishop (Wed Jun 02 2010 - 09:24:13 CDT)
- Axel Kohlmeyer (Tue Jun 01 2010 - 22:02:36 CDT)
- Philip Peartree (Tue Jun 01 2010 - 20:33:54 CDT)
- Axel Kohlmeyer (Thu Mar 06 2008 - 07:48:05 CST)
- joy tehrani (Thu Mar 06 2008 - 06:45:35 CST)
- John Stone (Wed Oct 17 2007 - 21:56:39 CDT)
- Zhaochuan Shen (Wed Oct 10 2007 - 13:09:22 CDT)
rmsd trajectory tool question
- Joseph Bylund (Tue Apr 20 2010 - 13:23:07 CDT)
RMSD trajectory tools
- Axel Kohlmeyer (Fri Feb 12 2010 - 07:20:42 CST)
- Asfa Ali (Fri Feb 12 2010 - 06:16:22 CST)
RMSD vs RMSF
- Francesco Oteri (Thu Oct 06 2011 - 15:37:05 CDT)
- Rabab Toubar (Thu Oct 06 2011 - 14:22:09 CDT)
rmsd with 2 different structures using serial numbers
- JC Gumbart (Wed Dec 22 2010 - 18:07:46 CST)
- Lisa Perez (Wed Dec 22 2010 - 11:43:28 CST)
- JC Gumbart (Tue Dec 21 2010 - 21:40:43 CST)
- Lisa Perez (Tue Dec 21 2010 - 14:38:48 CST)
- Lisa Perez (Tue Dec 21 2010 - 13:30:33 CST)
RMSD with protein ligand
- Luis Gracia (Thu Jan 17 2008 - 14:45:04 CST)
- Luis Gracia (Thu Jan 17 2008 - 10:26:44 CST)
- Francesco Pietra (Thu Jan 17 2008 - 11:11:35 CST)
- Francesco Pietra (Thu Jan 17 2008 - 00:49:37 CST)
rmsd-fullthrottle.tcl problem
- snoze pa (Thu Mar 30 2006 - 18:27:08 CST)
- Marcos Sotomayor (Wed Mar 29 2006 - 20:43:18 CST)
- Turman, Cheri M (Wed Mar 29 2006 - 20:25:40 CST)
- Marcos Sotomayor (Wed Mar 29 2006 - 19:49:32 CST)
- Turman, Cheri M (Wed Mar 29 2006 - 19:34:29 CST)
RMSD-gaps
- Karne, Sai Harish Babu (Mon Apr 20 2009 - 21:04:53 CDT)
- Daniel Gaston (Mon Apr 20 2009 - 18:57:33 CDT)
- Karne, Sai Harish Babu (Mon Apr 20 2009 - 17:09:51 CDT)
rmsdtt
- Luis Gracia (Fri Apr 01 2005 - 13:42:48 CST)
- Luis Gracia (Fri Apr 01 2005 - 12:53:45 CST)
- Wen Li (Fri Apr 01 2005 - 13:23:07 CST)
- Wen Li (Fri Apr 01 2005 - 11:15:08 CST)
RMSDTT plugin
- Luis Gracia (Tue Aug 24 2004 - 17:21:35 CDT)
rmsf
- Axel Kohlmeyer (Fri Aug 12 2011 - 03:52:10 CDT)
- Nima Nouri (Fri Aug 12 2011 - 02:20:23 CDT)
- hamze rahimi (Fri Aug 12 2011 - 01:32:44 CDT)
- John Stone (Fri May 22 2009 - 10:57:39 CDT)
- Maria Sanchez (Wed May 20 2009 - 23:14:17 CDT)
- Axel Kohlmeyer (Tue Sep 19 2006 - 11:07:26 CDT)
- andrea spitaleri (Tue Sep 19 2006 - 10:40:15 CDT)
- Samuel Flores (Thu May 25 2006 - 20:02:44 CDT)
- John Stone (Thu May 25 2006 - 14:54:21 CDT)
- Leyla Celik (Wed May 24 2006 - 06:07:55 CDT)
RMSF ?
- Brian Bennion (Wed Jun 21 2006 - 10:10:08 CDT)
- John Stone (Tue Jun 20 2006 - 16:13:57 CDT)
- ziemys_at_ecr6.ohio-state.edu (Tue Jun 20 2006 - 15:33:32 CDT)
RMSF and bigdcd
- John Stone (Fri May 25 2012 - 14:34:03 CDT)
- Axel Kohlmeyer (Tue May 22 2012 - 18:53:22 CDT)
- John Stone (Tue May 22 2012 - 18:02:31 CDT)
- Raul Araya (Mon May 21 2012 - 09:39:45 CDT)
RMSF calculation
- JC Gumbart (Thu Oct 06 2005 - 14:51:53 CDT)
- Michel Espinoza-Fonseca (Thu Oct 06 2005 - 08:23:00 CDT)
- Wei Chen (Wed May 04 2005 - 10:18:10 CDT)
- Michel Espinoza-Fonseca (Tue May 03 2005 - 15:58:43 CDT)
RMSF calculation question:
- Parminder Mankoo (Sat Jun 30 2007 - 22:06:43 CDT)
- Leonardo Trabuco (Sat Jun 30 2007 - 20:14:56 CDT)
- Parminder Mankoo (Sat Jun 30 2007 - 19:09:18 CDT)
RMSF calculation: residue wise
- hirdesh kumar (Sat Aug 21 2010 - 06:03:46 CDT)
- hirdesh kumar (Fri Aug 20 2010 - 13:30:42 CDT)
- Nicholas Musolino (Fri Aug 20 2010 - 12:46:36 CDT)
- Axel Kohlmeyer (Fri Aug 20 2010 - 12:13:21 CDT)
- hirdesh kumar (Fri Aug 20 2010 - 11:22:55 CDT)
rmsf calculations
- L. Michel Espinoza-Fonseca (Tue Feb 27 2007 - 05:51:47 CST)
- bora erdemli (Tue Feb 27 2007 - 01:42:25 CST)
RMSF measurement
- Jérôme Hénin (Thu Feb 24 2011 - 05:47:36 CST)
- Alex Liu (Wed Feb 23 2011 - 12:51:16 CST)
rmsf to b-factor conversion
- abinayar_at_imsc.res.in (Wed Mar 07 2012 - 04:06:29 CST)
RMSF value of a group of atoms
- John Stone (Mon Jan 09 2006 - 11:34:46 CST)
- h9826299_at_hkusua.hku.hk (Fri Dec 23 2005 - 12:02:16 CST)
RNA
- George Madalin Giambasu (Mon May 14 2007 - 15:40:29 CDT)
- Adrian Roitberg (Mon May 14 2007 - 14:25:03 CDT)
RNA first residue
- John Stone (Thu Apr 06 2006 - 14:29:42 CDT)
- vvenditti_at_biochem.wisc.edu (Thu Apr 06 2006 - 14:20:33 CDT)
rna pdb file
- John Stone (Thu Feb 13 2003 - 14:13:58 CST)
- Ioana Cozmuta (Wed Feb 12 2003 - 16:52:32 CST)
- John Stone (Wed Feb 12 2003 - 16:08:55 CST)
- Ioana Cozmuta (Wed Feb 12 2003 - 16:03:29 CST)
RNA polymerase docking on DNA
- Luis Rosales (Wed Feb 23 2005 - 22:55:20 CST)
- Jérôme Hénin (Thu Feb 24 2005 - 02:04:50 CST)
- Lady L. Gutierrez (Wed Feb 23 2005 - 18:54:11 CST)
rna topology and parameters for rna
- Brittany Morgan (Mon Oct 29 2007 - 08:20:16 CDT)
- Samuel Flores (Mon Oct 29 2007 - 01:14:01 CDT)
- Per Jr. Greisen (Mon Oct 29 2007 - 01:55:01 CDT)
- Per Jr. Greisen (Sun Oct 28 2007 - 04:56:03 CDT)
- Samuel Flores (Sun Oct 28 2007 - 03:23:39 CDT)
rock around the clock?
- Ivo Hofacker (Mon Oct 06 1997 - 21:25:08 CDT)
- Christoph Schneider (Mon Oct 06 1997 - 11:02:46 CDT)
rod-like shapes
- John Stone (Fri Jan 20 2006 - 17:05:26 CST)
- Craig Knox (Fri Jan 20 2006 - 16:49:21 CST)
Rodlike mixture
- John Stone (Wed Nov 19 2003 - 10:27:33 CST)
- nabil Khalil (Wed Nov 19 2003 - 07:02:47 CST)
Rolex replica is a ultimate gift
- Jimmie Corona (Tue Apr 29 2008 - 08:25:38 CDT)
Rosetta Academic Training Webinar
- Nir London (Wed Mar 25 2009 - 11:10:34 CDT)
Rosetta Academic Training Workshop
- Nir London (Tue Jan 27 2009 - 07:05:12 CST)
Rotate a box with pcb
- Matteo Guglielmi (Thu Oct 18 2007 - 14:07:16 CDT)
- Jan Saam (Thu Oct 18 2007 - 01:14:31 CDT)
- John Stone (Wed Oct 17 2007 - 22:24:58 CDT)
- Matteo Guglielmi (Tue Oct 09 2007 - 07:02:34 CDT)
rotate a molecule
- John Stone (Thu Dec 05 2002 - 17:12:33 CST)
- eric hu (Thu Dec 05 2002 - 17:09:28 CST)
rotate atomic coordinates?
- John Stone (Mon Aug 01 2005 - 14:32:54 CDT)
- Samuel Flores (Sun Jul 31 2005 - 14:58:36 CDT)
rotate dihedral angle
- Sebastian Stolzenberg (Wed Sep 16 2009 - 14:21:00 CDT)
- Peter Freddolino (Mon Sep 14 2009 - 21:32:23 CDT)
- Jorgen Simonsen (Mon Sep 14 2009 - 14:08:21 CDT)
Rotate dx map
- John Stone (Fri Jun 22 2007 - 17:25:56 CDT)
- Cesar Luis Avila (Thu Jun 21 2007 - 10:03:50 CDT)
Rotatind a chain (some further Qs)
- John Stone (Mon Mar 15 2004 - 13:49:01 CST)
- Ahmet Bakan (Fri Mar 12 2004 - 13:43:41 CST)
Rotatind a chainn
- John Stone (Fri Mar 12 2004 - 12:46:47 CST)
- Ahmet Bakan (Fri Mar 12 2004 - 08:59:09 CST)
Rotating a molecule around its center of mass...
- Nitin Bhardwaj (Wed Dec 08 2004 - 12:43:35 CST)
- Nitin Bhardwaj (Wed Dec 08 2004 - 12:40:21 CST)
Rotating a non-coordinate file
- Reza Salari (Wed Jun 22 2011 - 12:50:10 CDT)
- Axel Kohlmeyer (Wed Jun 22 2011 - 05:56:04 CDT)
- Reza Salari (Wed Jun 22 2011 - 04:45:53 CDT)
rotating a representation
- Dallas Warren (Mon Mar 08 2004 - 15:39:53 CST)
- John Stone (Mon Mar 08 2004 - 16:38:18 CST)
- Harindar Keer (Mon Mar 08 2004 - 14:04:10 CST)
Rotating and saving coordinates of a copy of molecule alongwith original molecule
- Cosseddu, Salvatore (Thu Mar 31 2011 - 16:59:32 CDT)
- Sujata Sovani (Thu Mar 31 2011 - 13:18:54 CDT)
Rotating and translating molecules ..
- Dallas Warren (Wed Jan 19 2005 - 17:04:06 CST)
- Justin Gullingsrud (Wed Jan 19 2005 - 16:34:00 CST)
- Dallas Warren (Wed Jan 19 2005 - 15:02:48 CST)
- Justin Gullingsrud (Tue Jan 18 2005 - 20:56:22 CST)
- Dallas Warren (Tue Jan 18 2005 - 19:15:56 CST)
Rotating cube files
- John Stone (Mon Jun 20 2005 - 17:35:43 CDT)
- Mikolai Fajer (Mon Jun 20 2005 - 12:44:26 CDT)
Rotating dihedrals
- John Stone (Fri May 30 2003 - 16:04:54 CDT)
- John Stone (Fri May 30 2003 - 15:16:18 CDT)
- Patrick Ladam (Fri May 30 2003 - 05:09:43 CDT)
rotating ligand
- Steve Seibold (Wed Aug 26 2009 - 14:58:19 CDT)
- Schreiner Eduard (Wed Aug 26 2009 - 15:07:49 CDT)
Rotating the current view
- John Stone (Sun Apr 11 2010 - 22:20:06 CDT)
- Muhammet ©smet Töreh Balta (Thu Apr 08 2010 - 11:10:17 CDT)
rotating two superposed molecules
- Justin Gullingsrud (Sun Dec 16 2001 - 16:36:58 CST)
- Marcela Madrid (Sun Dec 16 2001 - 14:44:44 CST)
Rotating user-defined graphics?
- Axel Kohlmeyer (Fri Feb 26 2010 - 13:24:30 CST)
- Reid Van Lehn (Fri Feb 26 2010 - 12:24:43 CST)
Rotation about one axis
- Sweta Iyer (Wed Dec 08 2010 - 19:43:55 CST)
rotation around phi/psi
- Roman Petrenko (Sun Sep 21 2008 - 14:46:00 CDT)
- John Stone (Sat Sep 20 2008 - 02:05:49 CDT)
- Roman Petrenko (Fri Sep 19 2008 - 21:05:24 CDT)
Rotation matrix translatin vector vmd
- Peter Freddolino (Thu Jul 26 2007 - 07:26:09 CDT)
- Hazai Eszter (Thu Jul 26 2007 - 05:37:23 CDT)
Rotation of molecules
- Axel Kohlmeyer (Tue Dec 02 2008 - 11:29:25 CST)
- Björn Windshügel (Tue Dec 02 2008 - 08:20:30 CST)
rotation to align
- Ana Celia Araujo Vila Verde (Fri Jan 19 2007 - 07:59:55 CST)
- Himanshu Khandelia (Fri Jan 19 2007 - 05:41:31 CST)
RPM spec file
- Axel Kohlmeyer (Tue Oct 17 2006 - 11:04:37 CDT)
- Andrew Gormanly (Tue Oct 17 2006 - 08:03:45 CDT)
RSMD of coarse grained molecules
- Gregorio Alanislobato (Tue Aug 17 2010 - 16:14:46 CDT)
- Axel Kohlmeyer (Mon Aug 16 2010 - 22:21:50 CDT)
- John Stone (Mon Aug 16 2010 - 21:50:07 CDT)
- Gregorio Alanislobato (Mon Aug 16 2010 - 20:29:13 CDT)
- Mert Gür (Mon Aug 16 2010 - 13:58:02 CDT)
- John Stone (Mon Aug 16 2010 - 12:57:59 CDT)
- Gregorio Alanislobato (Mon Aug 16 2010 - 12:13:59 CDT)
Run a variable through VMD Tk/Tcl console .vmdrc file
- Anthony Rey (Mon Oct 31 2011 - 02:09:42 CDT)
- Chris Harrison (Sun Oct 30 2011 - 10:28:37 CDT)
- Axel Kohlmeyer (Sun Oct 30 2011 - 10:04:09 CDT)
- Anthony Rey (Sun Oct 30 2011 - 06:55:06 CDT)
Run a variable through VMD Tk/Tcl console /// .vmdrc file
- Anthony Rey (Sun Oct 30 2011 - 06:14:22 CDT)
run and close vmd with bash script?
- Salvatore Mario Cosseddu (Wed May 18 2011 - 11:21:35 CDT)
- Axel Kohlmeyer (Wed May 18 2011 - 10:42:53 CDT)
- Salvatore Mario Cosseddu (Wed May 18 2011 - 10:10:22 CDT)
- Axel Kohlmeyer (Wed May 18 2011 - 08:23:49 CDT)
- Jorgen Simonsen (Wed May 18 2011 - 07:04:26 CDT)
Run Python Scripts in VMD on Mac OS X
- Axel Kohlmeyer (Tue Apr 27 2010 - 08:38:32 CDT)
- Burkhard Heil (Tue Apr 27 2010 - 06:52:50 CDT)
Run time error on Max Impact
- Brian Corrie (Wed Apr 16 1997 - 01:16:40 CDT)
run_vmd_tmp: Permission denied
- adil mughal (Thu Apr 22 2010 - 11:38:37 CDT)
- John Stone (Thu Apr 22 2010 - 10:32:35 CDT)
- adil mughal (Tue Apr 20 2010 - 10:37:09 CDT)
running a script
- Axel Kohlmeyer (Thu Nov 20 2008 - 11:54:38 CST)
- Mark M Huntress (Thu Nov 20 2008 - 10:03:10 CST)
Running a script using text mode
- Axel Kohlmeyer (Tue Nov 21 2006 - 12:18:02 CST)
- Myunggi Yi (Tue Nov 21 2006 - 11:45:15 CST)
- Myunggi Yi (Tue Nov 21 2006 - 11:39:53 CST)
- Myunggi Yi (Tue Nov 21 2006 - 11:36:11 CST)
- John Stone (Tue Nov 21 2006 - 10:31:11 CST)
- Myunggi Yi (Tue Nov 21 2006 - 09:47:43 CST)
Running a vmd tcl script in the background
- Axel Kohlmeyer (Mon Aug 13 2007 - 19:11:53 CDT)
- Arneh Babakhani (Mon Aug 13 2007 - 19:05:20 CDT)
running ca-dist.tcl
- L. Michel Espinoza-Fonseca (Thu Mar 20 2008 - 10:38:50 CDT)
- Simpson, Lisa M (Thu Mar 20 2008 - 08:57:47 CDT)
running ILS under Windows 7
- Irene Newhouse (Sun Mar 14 2010 - 16:51:20 CDT)
- Axel Kohlmeyer (Sun Mar 14 2010 - 14:11:16 CDT)
- Irene Newhouse (Sat Mar 13 2010 - 22:32:15 CST)
Running IMD interactivelly under the shell
- Nuno Sousa Cerqueira (Thu Mar 18 2010 - 17:50:33 CDT)
- Axel Kohlmeyer (Thu Mar 18 2010 - 17:56:52 CDT)
- Axel Kohlmeyer (Thu Mar 18 2010 - 16:54:42 CDT)
- John Stone (Thu Mar 18 2010 - 16:16:06 CDT)
- Nuno Sousa Cerqueira (Thu Mar 18 2010 - 14:18:22 CDT)
running LAMMPS output via VMD
- Axel Kohlmeyer (Mon Feb 01 2010 - 07:37:44 CST)
- Krigel, Igal (Mon Feb 01 2010 - 06:10:56 CST)
Running Namd in Window
- John Stone (Mon Jan 03 2011 - 13:46:34 CST)
- zizi moradi (Fri Dec 31 2010 - 18:34:43 CST)
running namd2 on Mac PPC cluster
- Axel Kohlmeyer (Sun Feb 14 2010 - 15:16:22 CST)
- Robert Wohlhueter (Sun Feb 14 2010 - 13:13:16 CST)
running plugin from the command line
- Sara Nichols (Thu Apr 28 2011 - 11:28:43 CDT)
- Leonardo Trabuco (Thu Apr 28 2011 - 11:12:06 CDT)
- Axel Kohlmeyer (Wed Apr 27 2011 - 15:34:10 CDT)
- Sara Nichols (Wed Apr 27 2011 - 14:49:33 CDT)
Running Python within VMD
- John Stone (Wed Mar 03 2010 - 10:41:49 CST)
- radak004_at_umn.edu (Tue Mar 02 2010 - 13:07:51 CST)
running simulation on dual core processor
- JC Gumbart (Fri Sep 19 2008 - 13:50:27 CDT)
- Mamta Mohan (Fri Sep 19 2008 - 10:44:27 CDT)
running under Shell using VMD
- Axel Kohlmeyer (Tue Nov 03 2009 - 21:43:33 CST)
- John Stone (Tue Nov 03 2009 - 09:11:05 CST)
- Nuno Sousa Cerqueira (Tue Nov 03 2009 - 07:41:11 CST)
- Nicolas Sapay (Tue Nov 03 2009 - 05:07:45 CST)
- Nuno Sousa Cerqueira (Tue Nov 03 2009 - 02:29:30 CST)
RUNNING VMD
- John Stone (Thu Mar 03 2005 - 13:53:11 CST)
- Claire Zerafa (Thu Mar 03 2005 - 12:42:35 CST)
running vmd as pbs job
- zhenlong li (Fri May 09 2008 - 08:34:41 CDT)
- John Stone (Fri May 09 2008 - 02:29:22 CDT)
- zhenlong li (Tue May 06 2008 - 14:40:44 CDT)
Running VMD from the terminal on MacBook Pro
- Steven S Plotkin (Wed Nov 03 2010 - 11:30:51 CDT)
- Shore, Jay (Wed Nov 03 2010 - 10:52:49 CDT)
- Leonardo Trabuco (Wed Nov 03 2010 - 08:37:44 CDT)
- Steven S Plotkin (Wed Nov 03 2010 - 08:25:15 CDT)
running vmd in batch mode
- John Stone (Thu Nov 06 2003 - 19:26:27 CST)
- Ioana Cozmuta (Thu Nov 06 2003 - 19:19:30 CST)
- John Stone (Thu Nov 06 2003 - 17:28:49 CST)
- Ioana Cozmuta (Thu Nov 06 2003 - 15:46:19 CST)
running vmd in parallel
- Axel Kohlmeyer (Wed Mar 05 2008 - 12:37:02 CST)
- John Stone (Wed Mar 05 2008 - 12:31:35 CST)
- Michael Kreim (Wed Mar 05 2008 - 11:13:10 CST)
running vmd on computer node
- Axel Kohlmeyer (Mon Jun 29 2009 - 13:46:51 CDT)
- BIN ZHANG (Mon Jun 29 2009 - 12:55:08 CDT)
Running VMD on Mac OS X
- Christopher Share (Mon Dec 01 2008 - 23:23:08 CST)
Running VTK from VMD's python
- John Stone (Tue Nov 25 2003 - 13:52:55 CST)
- Lars Bruno Hansen (Tue Nov 25 2003 - 06:55:29 CST)
- John Stone (Fri Nov 21 2003 - 17:51:02 CST)
- Lars Bruno Hansen (Thu Nov 13 2003 - 09:51:13 CST)
- John Stone (Mon Nov 10 2003 - 11:01:04 CST)
- Lars Bruno Hansen (Mon Nov 10 2003 - 04:12:25 CST)
- John Stone (Thu Nov 06 2003 - 16:50:53 CST)
- Lars Bruno Hansen (Thu Oct 30 2003 - 11:15:23 CST)
- John Stone (Thu Oct 30 2003 - 10:42:15 CST)
- Justin Gullingsrud (Thu Oct 30 2003 - 09:29:46 CST)
- Lars Bruno Hansen (Thu Oct 30 2003 - 08:21:43 CST)
Running without interface
- Axel Kohlmeyer (Thu Sep 04 2008 - 12:06:44 CDT)
- Emily Moore (Thu Sep 04 2008 - 11:29:02 CDT)
runsqm plugin required but not installed
- John Stone (Tue Aug 24 2010 - 17:12:24 CDT)
RuntimeError: tk.h version (8.4) doesn't match libtk.a version (8.5)
- J. Rui Rodrigues (Tue Apr 06 2010 - 08:11:00 CDT)
- John Stone (Fri Apr 02 2010 - 00:26:18 CDT)
- J. Rui Rodrigues (Thu Apr 01 2010 - 11:51:06 CDT)
Rx for VMD crashing PC?
- John Stone (Mon Oct 05 2009 - 20:46:10 CDT)
- MyLinkka (Mon Oct 05 2009 - 17:40:16 CDT)
- Ronald Salesky (Fri Oct 02 2009 - 11:42:51 CDT)
- John Stone (Fri Oct 02 2009 - 10:26:13 CDT)
- Ronald Salesky (Thu Oct 01 2009 - 21:57:00 CDT)
Réf. : calculate rmsd in a loop:feedback [sorry if you get it twice]
- l.spitzer_at_fr.fournierpharma.com (Thu Nov 17 2005 - 04:50:45 CST)
- Nuno R. L. Ferreira (Thu Nov 17 2005 - 04:34:44 CST)
- Nuno R. L. Ferreira (Thu Nov 17 2005 - 04:14:40 CST)
- andrea spitaleri (Thu Nov 17 2005 - 04:14:01 CST)
- l.spitzer_at_fr.fournierpharma.com (Thu Nov 17 2005 - 03:52:05 CST)
s-s bond in vmd not visualized
- John Stone (Thu Dec 08 2005 - 16:36:29 CST)
- andrea spitaleri (Mon Dec 05 2005 - 03:24:16 CST)
- John Stone (Fri Dec 02 2005 - 13:07:24 CST)
- andrea spitaleri (Tue Nov 29 2005 - 03:22:52 CST)
- John Stone (Mon Nov 28 2005 - 11:21:49 CST)
- Axel Kohlmeyer (Wed Nov 23 2005 - 11:31:57 CST)
- andrea spitaleri (Wed Nov 23 2005 - 03:05:39 CST)
- JC Gumbart (Wed Nov 23 2005 - 13:43:35 CST)
- andrea spitaleri (Tue Nov 22 2005 - 07:03:52 CST)
Salt bridges
- Nuno R. L. Ferreira (Thu Apr 27 2006 - 09:14:32 CDT)
Salt brigde
- Jérôme Hénin (Thu Jul 07 2011 - 15:32:27 CDT)
- John Stone (Thu Jul 07 2011 - 13:01:56 CDT)
- Christian Wohlschlager (Thu Jul 07 2011 - 01:06:51 CDT)
saltbr plugging problem: too many open files
- Leonardo Trabuco (Fri Dec 21 2007 - 14:35:16 CST)
- Amaury Pupo Meriño (Fri Dec 21 2007 - 09:31:07 CST)
saltbr# vs. frames
- Leonardo Trabuco (Mon Jul 23 2007 - 10:32:46 CDT)
- Leonardo Trabuco (Mon Jul 23 2007 - 10:28:01 CDT)
- hori koshii (Mon Jul 23 2007 - 06:50:10 CDT)
Same pdb file, different image
- hamdi (Fri Feb 23 2007 - 03:02:57 CST)
- Leonardo Trabuco (Thu Feb 22 2007 - 23:44:37 CST)
- Hai-Jun Su (Thu Feb 22 2007 - 22:11:27 CST)
same view in VMD and Molscript
- John Stone (Tue Feb 25 2003 - 15:08:47 CST)
- Eckhart Guthöhrlein (Tue Feb 25 2003 - 10:22:10 CST)
SAS values for a residue
- Mgr. Lubos Vrbka (Thu Jul 28 2005 - 05:00:35 CDT)
- John Stone (Wed Jul 27 2005 - 10:30:31 CDT)
- Michel Espinoza-Fonseca (Wed Jul 27 2005 - 10:22:41 CDT)
- Andrea Carotti (Wed Jul 27 2005 - 07:58:45 CDT)
sasa
- John Stone (Tue Apr 17 2007 - 13:15:22 CDT)
- John Stone (Fri Apr 13 2007 - 11:07:50 CDT)
- Myunggi Yi (Thu Apr 12 2007 - 16:16:09 CDT)
- Myunggi Yi (Thu Apr 12 2007 - 16:14:41 CDT)
- John Stone (Thu Apr 12 2007 - 15:08:32 CDT)
- Myunggi Yi (Thu Apr 12 2007 - 10:02:14 CDT)
- Myunggi Yi (Wed Apr 11 2007 - 21:42:25 CDT)
- John Stone (Mon Aug 08 2005 - 19:19:47 CDT)
- Irena Tuszyska (Mon Aug 08 2005 - 04:17:17 CDT)
- John Stone (Fri Jan 31 2003 - 10:24:41 CST)
- Rukman Hertadi (Fri Jan 31 2003 - 03:59:16 CST)
SASA -tcl script
- John Stone (Tue Feb 21 2012 - 14:31:09 CST)
- Ban Arn (Tue Feb 21 2012 - 12:36:07 CST)
SASA and SESA
- John Stone (Sun Jan 24 2010 - 15:47:28 CST)
- Eduard Schreiner (Sun Jan 24 2010 - 15:38:54 CST)
- Khaled Barakat (Sun Jan 24 2010 - 15:31:59 CST)
- John Stone (Sun Jan 24 2010 - 14:51:08 CST)
- Khaled Barakat (Sun Jan 24 2010 - 14:44:45 CST)
- Khaled Barakat (Fri Jan 22 2010 - 20:22:25 CST)
sasa by residue
- Peter Freddolino (Thu Jan 11 2007 - 22:33:55 CST)
- alexandra.marques_at_fc.up.pt (Thu Jan 11 2007 - 13:42:07 CST)
- Peter Freddolino (Tue Jan 09 2007 - 10:02:00 CST)
- alexandra.marques_at_fc.up.pt (Mon Jan 08 2007 - 19:01:04 CST)
SASA calculation
- Aditya Padhi (Mon May 09 2011 - 05:26:36 CDT)
SASA calculation (protein + small molecules)
- John Stone (Fri Feb 29 2008 - 13:11:37 CST)
- Dong Xu (Sun Feb 24 2008 - 20:42:44 CST)
- Manali Mehendale (Thu Feb 07 2008 - 14:45:37 CST)
SASA calculation for a trajectory
- L. Michel Espinoza-Fonseca (Tue Aug 08 2006 - 21:31:51 CDT)
- Gaurav Sharma (Tue Aug 08 2006 - 20:50:32 CDT)
SASA calculation using periodic images?
- Jesper Sørensen (Thu May 05 2011 - 07:27:34 CDT)
- Edward Lyman (Tue May 03 2011 - 09:34:57 CDT)
- Jesper Sørensen (Tue May 03 2011 - 08:38:29 CDT)
- Axel Kohlmeyer (Tue May 03 2011 - 07:10:56 CDT)
- Jesper SÃ¸rensen (Tue May 03 2011 - 06:50:35 CDT)
- Jesper SÃ¸rensen (Tue May 03 2011 - 06:14:31 CDT)
sasa function
- John Stone (Thu Jan 21 2010 - 14:09:13 CST)
- Deepangi Pandit (Thu Jan 21 2010 - 09:13:45 CST)
- Bernhard Knapp (Thu Jan 21 2010 - 02:32:31 CST)
Sasa implentation/ algorithm VMD
- John Stone (Sat Jul 03 2010 - 09:14:11 CDT)
- henri mone (Thu Jul 01 2010 - 17:19:06 CDT)
SASA measurements
- John Stone (Tue May 08 2007 - 14:00:49 CDT)
- Michael S. Marlow (Tue May 08 2007 - 11:17:12 CDT)
Sasa script in python returns "Runtime error"
- Per Jr. Greisen (Wed Jan 30 2008 - 10:13:38 CST)
- Axel Kohlmeyer (Wed Jan 30 2008 - 10:24:55 CST)
- Axel Kohlmeyer (Wed Jan 30 2008 - 10:28:57 CST)
- John Stone (Wed Jan 30 2008 - 10:26:18 CST)
- Axel Kohlmeyer (Wed Jan 30 2008 - 09:01:21 CST)
- Axel Kohlmeyer (Tue Jan 29 2008 - 11:19:17 CST)
- Per Jr. Greisen (Tue Jan 29 2008 - 09:53:59 CST)
Satellite tobacco mosaic virus images making by VMD
- Anton Arkhipov (Tue May 05 2009 - 12:48:10 CDT)
- John Stone (Tue May 05 2009 - 10:28:42 CDT)
- ÖÜÎÄ²ý (Tue May 05 2009 - 10:16:45 CDT)
- John Stone (Tue May 05 2009 - 09:24:32 CDT)
- ÖÜÎÄ²ý (Tue May 05 2009 - 08:31:33 CDT)
sausage nmr ensemble
- John Stone (Tue Mar 21 2006 - 10:34:01 CST)
- spitaleri.andrea_at_hsr.it (Tue Mar 21 2006 - 10:09:48 CST)
- John Stone (Tue Mar 21 2006 - 09:50:08 CST)
- spitaleri.andrea_at_hsr.it (Tue Mar 21 2006 - 04:09:48 CST)
sausage view of NMR ensembles
- John Stone (Thu Jan 31 2008 - 23:31:36 CST)
- dimka (Thu Jan 31 2008 - 23:10:59 CST)
save
- John Stone (Tue Aug 20 2002 - 17:23:26 CDT)
- Vlad Cojocaru (Tue Aug 20 2002 - 06:15:02 CDT)
Save "Visulaization State" from within Tk Console
- Bjoern Olausson (Mon Nov 14 2011 - 01:17:02 CST)
- John Stone (Fri Nov 11 2011 - 09:20:43 CST)
- Axel Kohlmeyer (Fri Nov 11 2011 - 08:57:13 CST)
- Axel Kohlmeyer (Fri Nov 11 2011 - 08:41:38 CST)
- Bjoern Olausson (Fri Nov 11 2011 - 07:48:03 CST)
- Bjoern Olausson (Fri Nov 11 2011 - 07:41:18 CST)
Save Atom Selection to DCD
- Axel Kohlmeyer (Thu Dec 16 2010 - 04:29:53 CST)
- Wei Chen (Wed Dec 15 2010 - 14:55:24 CST)
- David Huggins (Wed Dec 15 2010 - 13:46:16 CST)
save config & RMSD not functioning
- John Stone (Thu Nov 29 2001 - 11:26:24 CST)
- nepenthes_at_vplaces.net (Thu Nov 29 2001 - 01:28:10 CST)
Save coor coordinates as pdb
- John Stone (Wed Feb 01 2012 - 13:53:58 CST)
- R. Charbel Maroun (Wed Feb 01 2012 - 12:26:31 CST)
save coordinate POSCAR
- Axel Kohlmeyer (Tue May 10 2011 - 13:50:39 CDT)
- Haijun (Tue May 10 2011 - 13:58:07 CDT)
- Axel Kohlmeyer (Tue May 10 2011 - 13:30:03 CDT)
- Haijun (Tue May 10 2011 - 12:56:09 CDT)
save coordinates after moving them.
- Cesar Millan (Wed Oct 04 2006 - 15:35:33 CDT)
- John Stone (Wed Oct 04 2006 - 00:12:59 CDT)
- Cesar Millan (Tue Oct 03 2006 - 15:32:17 CDT)
- John Stone (Tue Oct 03 2006 - 14:35:50 CDT)
- Cesar Millan (Tue Oct 03 2006 - 14:02:41 CDT)
Save Coordinates for Multiple Loads
- Vlad Cojocaru (Mon May 30 2011 - 00:33:50 CDT)
- Vlad Cojocaru (Sun May 29 2011 - 14:53:11 CDT)
- Axel Kohlmeyer (Sun May 29 2011 - 10:17:22 CDT)
- Qmer_AN?= (Sun May 29 2011 - 09:14:25 CDT)
Save coordinates from MD simulation
- Axel Kohlmeyer (Thu Jan 04 2007 - 11:46:39 CST)
- Per Jr. Greisen (Thu Jan 04 2007 - 10:55:34 CST)
Save Coordinates Question ...
- Axel Kohlmeyer (Fri Mar 25 2011 - 13:04:44 CDT)
- Phelan Jr., Frederick R. Dr. (Fri Mar 25 2011 - 12:34:01 CDT)
- Phelan Jr., Frederick R. Dr. (Fri Mar 25 2011 - 12:22:50 CDT)
Save molecule in pdb format
- Peter C. Lai (Sat Apr 30 2011 - 13:50:01 CDT)
- Axel Kohlmeyer (Sat Apr 30 2011 - 04:42:15 CDT)
- Peter C. Lai (Sat Apr 30 2011 - 04:34:27 CDT)
- Ajasja LjubetiÄ (Sat Apr 30 2011 - 02:29:35 CDT)
- Moutusi Manna (Sat Apr 30 2011 - 01:43:55 CDT)
save NAMD plot as a picture
- John Stone (Thu Jun 19 2008 - 23:51:06 CDT)
- S.K. Ghosh (Thu Jun 19 2008 - 14:00:30 CDT)
Save pdb with original numbering
- Ricardo Soares (Tue Nov 29 2011 - 18:58:56 CST)
- Peter C. Lai (Tue Nov 29 2011 - 17:22:35 CST)
- Ricardo Soares (Tue Nov 29 2011 - 13:25:16 CST)
- Dong Luo (Tue Nov 29 2011 - 10:12:44 CST)
- John Stone (Tue Nov 29 2011 - 10:25:22 CST)
- Ricardo Soares (Tue Nov 29 2011 - 05:47:33 CST)
save psf
- Ekta Khurana (Thu Feb 19 2004 - 16:44:16 CST)
save selected residues
- Axel Kohlmeyer (Mon Aug 11 2008 - 11:01:48 CDT)
- bo baker (Mon Aug 11 2008 - 06:31:12 CDT)
- Axel Kohlmeyer (Sun Aug 10 2008 - 09:48:15 CDT)
- bo baker (Sun Aug 10 2008 - 06:04:37 CDT)
Save State Fails
- Andrew Dalke (Thu Jul 23 2009 - 13:11:46 CDT)
- Leonardo Trabuco (Wed Jul 22 2009 - 00:52:57 CDT)
- Carmen Valladares (Tue Jul 21 2009 - 18:57:00 CDT)
- Cojocaru,Vlad (Thu Aug 02 2007 - 13:41:29 CDT)
- Axel Kohlmeyer (Thu Aug 02 2007 - 10:40:25 CDT)
- Vlad Cojocaru (Thu Aug 02 2007 - 10:09:12 CDT)
- Vlad Cojocaru (Thu Aug 02 2007 - 10:20:03 CDT)
Save state miss some parameters !
- John Stone (Tue Sep 24 2002 - 09:36:49 CDT)
- Stéphane Teletchéa (Tue Sep 24 2002 - 06:55:50 CDT)
save states with relative directory structure
- Axel Kohlmeyer (Wed Oct 20 2004 - 11:15:27 CDT)
- John Stone (Wed Oct 20 2004 - 09:40:09 CDT)
- Marc Q. Ma (Wed Oct 20 2004 - 08:00:23 CDT)
Save thousands... no one will know
- Olivia Reilly (Sat Mar 07 2009 - 11:23:52 CST)
Save/restore display parameters
- John Stone (Mon May 07 2012 - 10:40:59 CDT)
- Jérôme Hénin (Fri May 04 2012 - 09:51:28 CDT)
save_state
- John Stone (Thu Jan 30 2003 - 13:28:24 CST)
Save_state and Load_state
- John Stone (Fri May 02 2003 - 10:04:44 CDT)
- Jill Vickery (Thu May 01 2003 - 12:05:00 CDT)
saving a GMX trajectory using tcl script
- John Stone (Thu Jun 17 2010 - 14:43:00 CDT)
- Rabab Toubar (Wed Jun 16 2010 - 07:21:00 CDT)
saving a tiff file
- Dr. Daniel James White PhD (Wed Dec 18 2002 - 05:16:45 CST)
- John Stone (Tue Dec 17 2002 - 16:36:56 CST)
- Robert Brunner (Mon Dec 16 2002 - 20:01:02 CST)
- John Stone (Mon Dec 16 2002 - 17:43:51 CST)
- Marcela Madrid (Mon Dec 16 2002 - 15:01:30 CST)
saving bond-length information
- Axel Kohlmeyer (Thu Sep 11 2003 - 06:36:48 CDT)
- Karsten Suhre (Thu Sep 11 2003 - 04:51:47 CDT)
saving charges
- Axel Kohlmeyer (Mon Sep 08 2008 - 14:13:46 CDT)
- snoze pa (Mon Sep 08 2008 - 12:14:15 CDT)
saving charges in the B column
- Leonardo Trabuco (Sat Sep 09 2006 - 18:09:38 CDT)
- Axel Kohlmeyer (Fri Sep 08 2006 - 19:27:52 CDT)
- L. Michel Espinoza-Fonseca (Fri Sep 08 2006 - 18:53:11 CDT)
saving coordinates of expanded cell
- John Stone (Tue May 02 2006 - 10:44:20 CDT)
- James Rustad (Tue May 02 2006 - 10:36:26 CDT)
Saving coordinates that meet selection criteria for each frame
- Wang Yi (Tue Apr 17 2012 - 19:23:15 CDT)
- Axel Kohlmeyer (Tue Apr 17 2012 - 19:20:56 CDT)
- Ben Rodriguez (Tue Apr 17 2012 - 18:28:43 CDT)
saving dcd file different if by script or by interactive mode
- Kei Sit (Tue Apr 10 2012 - 19:24:56 CDT)
- Axel Kohlmeyer (Tue Apr 10 2012 - 18:16:03 CDT)
- Jose Borreguero (Tue Apr 10 2012 - 18:23:01 CDT)
- Jose Borreguero (Tue Apr 10 2012 - 17:32:11 CDT)
saving dcd with less frames
- Bjoern Olausson (Tue Jun 07 2011 - 05:27:58 CDT)
- Axel Kohlmeyer (Tue Jun 07 2011 - 05:08:17 CDT)
- Joyce Tan (Tue Jun 07 2011 - 04:39:35 CDT)
Saving ionized.psf from add ions plug in of VMD
- Andrea Holfelder (Wed Aug 31 2011 - 14:27:04 CDT)
- Axel Kohlmeyer (Wed Aug 31 2011 - 11:34:08 CDT)
- Andrea Holfelder (Wed Aug 31 2011 - 10:35:45 CDT)
saving macros
- Axel Kohlmeyer (Wed Nov 02 2005 - 08:43:58 CST)
- Anna Modzelewska (Wed Nov 02 2005 - 05:35:09 CST)
Saving mol2 file
- Peter Freddolino (Wed Apr 18 2007 - 11:00:26 CDT)
- Atila Iamarino (Wed Apr 18 2007 - 10:50:57 CDT)
- Peter Freddolino (Mon Apr 16 2007 - 12:48:18 CDT)
- Atila Iamarino (Mon Apr 16 2007 - 12:36:00 CDT)
Saving mutli-molecule structures in VMD (e.g., for building membranes)
- Axel Kohlmeyer (Mon Feb 05 2007 - 12:09:15 CST)
- Cesar Luis Avila (Mon Feb 05 2007 - 09:11:38 CST)
- wolfinbm_at_uci.edu (Sun Feb 04 2007 - 22:20:41 CST)
Saving of pdb-trajectory in NMR-like format
- James Starlight (Tue Apr 17 2012 - 09:21:40 CDT)
saving trajectories from the command line
- Axel Kohlmeyer (Thu Oct 16 2008 - 09:11:17 CDT)
- Jim Pfaendtner (Thu Oct 16 2008 - 07:28:00 CDT)
Saving two molecules into one PDB file
- John Stone (Fri Aug 16 2002 - 13:44:32 CDT)
- Reinhard Klement (Fri Aug 16 2002 - 09:41:54 CDT)
Saving work in VMD--this seems ridiculously difficult!
- Axel Kohlmeyer (Fri Feb 09 2007 - 10:52:01 CST)
- Cesar Luis Avila (Thu Feb 08 2007 - 20:53:30 CST)
- John Stone (Thu Feb 08 2007 - 18:34:34 CST)
- L. Michel Espinoza-Fonseca (Thu Feb 08 2007 - 17:13:52 CST)
- wolfinbm_at_uci.edu (Thu Feb 08 2007 - 16:09:52 CST)
sball.h not found
- Luis Rosales (Sat Jun 25 2005 - 21:31:01 CDT)
- Ignacio Rodriguez Fernandez (Sat Jun 25 2005 - 08:47:16 CDT)
SBCG membrane
- Anton Arkhipov (Wed Dec 24 2008 - 15:01:38 CST)
- Dolan, Michael (NIH/NIAID) [C] (Wed Dec 24 2008 - 11:59:25 CST)
sbcg with multimers
- Anton Arkhipov (Sun Jan 17 2010 - 23:37:48 CST)
- Francesco Pietra (Wed Dec 30 2009 - 15:22:43 CST)
scale trajectory coords
- Axel Kohlmeyer (Wed May 21 2008 - 22:58:01 CDT)
- Peter Jones (Wed May 21 2008 - 22:28:35 CDT)
scan interleaved stereo on Zalman M220W monitor
- John Stone (Tue Jul 14 2009 - 13:25:50 CDT)
- Sinan Arslan (Tue Jul 14 2009 - 13:11:39 CDT)
Screen corruption
- John Stone (Wed Dec 15 2004 - 08:57:05 CST)
- Sylvain EDALEINE (Wed Dec 15 2004 - 04:16:22 CST)
screen size
- John Stone (Mon Sep 19 2005 - 10:41:28 CDT)
- Jeffrey Tseng (Sat Sep 17 2005 - 10:12:41 CDT)
- Jeffrey Tseng (Sat Sep 17 2005 - 09:47:31 CDT)
- John Stone (Fri Sep 16 2005 - 21:08:55 CDT)
- Jeffrey Tseng (Fri Sep 16 2005 - 18:09:39 CDT)
script
- Axel Kohlmeyer (Mon Aug 08 2011 - 22:37:15 CDT)
- KIRTANA S (Mon Aug 08 2011 - 16:09:45 CDT)
- KIRTANA S (Mon Jul 18 2011 - 13:20:52 CDT)
- Ajasja LjubetiÄ (Tue Jul 12 2011 - 13:01:26 CDT)
- Axel Kohlmeyer (Tue Jul 12 2011 - 11:58:55 CDT)
- Ajasja LjubetiÄ (Tue Jul 12 2011 - 12:08:12 CDT)
- KIRTANA S (Tue Jul 12 2011 - 11:12:41 CDT)
- Axel Kohlmeyer (Wed Jul 06 2011 - 19:01:31 CDT)
- KIRTANA S (Wed Jul 06 2011 - 17:04:29 CDT)
- Sergio Anis (Tue Sep 06 2005 - 07:11:50 CDT)
SCRIPT directory...
- gianluca santarossa (Thu Jan 16 2003 - 04:10:48 CST)
- John Stone (Wed Jan 15 2003 - 11:47:47 CST)
- Sanjeev B.S. (Wed Jan 15 2003 - 11:46:56 CST)
Script error
- Axel Kohlmeyer (Tue Sep 01 2009 - 12:55:26 CDT)
- Negar Ashari Astani (Tue Sep 01 2009 - 11:58:32 CDT)
Script for Angular Distribution Function?
- Axel Kohlmeyer (Wed Dec 07 2011 - 10:48:47 CST)
- Dudo (Tue Dec 06 2011 - 10:30:41 CST)
- David Cohen-Tanugi (Tue Dec 06 2011 - 09:45:36 CST)
script for area per lipid
- Ajeeta kaushiki (Tue Mar 09 2010 - 05:04:27 CST)
- Demet Akten (Mon Mar 08 2010 - 06:39:16 CST)
script for atom collisions
- Kailee (Fri Jun 15 2007 - 12:21:13 CDT)
- John Stone (Wed Jun 13 2007 - 03:01:10 CDT)
- Kailee (Tue Jun 12 2007 - 08:58:36 CDT)
- John Stone (Mon Jun 11 2007 - 15:35:55 CDT)
- Kailee (Mon Jun 11 2007 - 12:10:30 CDT)
Script for automated selection
- Andrea Carotti (Wed Jun 22 2005 - 03:28:54 CDT)
- Axel Kohlmeyer (Mon Jun 20 2005 - 12:58:41 CDT)
- Blake Charlebois (Mon Jun 20 2005 - 12:28:39 CDT)
- Andrea Carotti (Mon Jun 20 2005 - 09:38:51 CDT)
Script for calculating energy of a water molecule
- Jindal Shah (Wed Aug 17 2005 - 17:07:12 CDT)
- John Stone (Wed Aug 17 2005 - 14:32:41 CDT)
- Jindal Shah (Wed Aug 17 2005 - 11:41:23 CDT)
Script for calculating hydrogen-bonding energy
- Jianping Lin (Thu Mar 05 2009 - 19:19:28 CST)
Script for counting water molecules
- Joshua Adelman (Mon Nov 08 2010 - 15:26:02 CST)
- aneesh cna (Mon Nov 08 2010 - 07:06:33 CST)
script for cutting box
- John Stone (Wed Mar 29 2006 - 10:24:32 CST)
- John Stone (Wed Mar 29 2006 - 09:48:05 CST)
script for generating stereo postscript images
- John Stone (Fri Feb 11 2000 - 15:55:06 CST)
- Charles_at_Schwieters.org (Fri Feb 11 2000 - 14:53:32 CST)
script for mapping the electrostatic potential from APBS on surfaces
- Vlad Cojocaru (Wed Jan 26 2005 - 10:01:02 CST)
- John Stone (Wed Jan 26 2005 - 09:38:50 CST)
- Vlad Cojocaru (Wed Jan 26 2005 - 03:58:37 CST)
script for multiple structure superimposition?
- John Stone (Thu May 04 2006 - 16:58:04 CDT)
- Shirley Li (Thu May 04 2006 - 16:48:33 CDT)
script for projection of c-alpha atom cordinates on xy plane
- PaweÅ‚ KÄ™dzierski (Tue Mar 22 2011 - 08:19:14 CDT)
- Mark Cunningham (Tue Mar 22 2011 - 07:56:34 CDT)
- ban arn (Tue Mar 22 2011 - 05:00:42 CDT)
- PaweÅ‚ KÄ™dzierski (Tue Mar 22 2011 - 04:11:53 CDT)
- Mark Cunningham (Mon Mar 21 2011 - 13:56:12 CDT)
- J. Rui Rodrigues (Mon Mar 21 2011 - 12:12:28 CDT)
- ban arn (Mon Mar 21 2011 - 10:37:03 CDT)
- PaweÅ‚ KÄ™dzierski (Fri Mar 18 2011 - 15:17:31 CDT)
- Ajasja LjubetiÄ (Fri Mar 18 2011 - 15:23:12 CDT)
- Joseph Bylund (Fri Mar 18 2011 - 13:39:37 CDT)
- ban arn (Fri Mar 18 2011 - 12:58:19 CDT)
script hangs when use full dcd file
- Irene Newhouse (Fri Jan 25 2008 - 14:56:47 CST)
- John Stone (Fri Jan 25 2008 - 14:32:42 CST)
- Irene Newhouse (Fri Jan 25 2008 - 14:14:53 CST)
script no reading correct number of frames
- John Stone (Thu Jan 12 2006 - 10:07:41 CST)
- syma (Thu Jan 12 2006 - 10:03:02 CST)
script problem
- Mark M Huntress (Thu Mar 31 2011 - 15:32:33 CDT)
- John Stone (Thu Mar 31 2011 - 15:39:01 CDT)
- J. Rui Rodrigues (Thu Mar 12 2009 - 07:01:30 CDT)
- Peter Freddolino (Thu Mar 12 2009 - 07:07:14 CDT)
- J. Rui Rodrigues (Thu Mar 12 2009 - 06:16:17 CDT)
- Christopher Hartshorn (Thu Mar 12 2009 - 03:40:50 CDT)
- John Stone (Fri Apr 30 2004 - 16:02:12 CDT)
- Ioana Cozmuta (Thu Apr 29 2004 - 23:09:49 CDT)
script that reacts on movement of frameslider in vmd main
- Benjamin Bouvier (Mon Dec 01 2008 - 09:28:55 CST)
- Nadja Lederer (Mon Dec 01 2008 - 07:41:36 CST)
script to calculate molecular surface area
- latha (Wed Jul 28 2010 - 12:46:23 CDT)
script to change representaiton
- John Stone (Thu Mar 30 2006 - 17:55:05 CST)
- John Stone (Thu Mar 30 2006 - 17:24:24 CST)
- Harindar Keer (Thu Mar 30 2006 - 16:37:49 CST)
script to load dcds from Replica Exchange simulations by Temperature
- Ana Celia Araujo Vila Verde (Mon Jan 15 2007 - 17:30:44 CST)
script to modify cysteines with spinlabel
- Ajasja LjubetiÄ (Tue Jan 24 2012 - 13:35:22 CST)
- Anna Kuznetsova (Mon Jan 23 2012 - 14:55:50 CST)
script to read dcd frame-at-a-time & write a selection
- Irene Newhouse (Tue Mar 25 2008 - 00:11:29 CDT)
- Irene Newhouse (Mon Mar 24 2008 - 20:07:20 CDT)
- Irene Newhouse (Mon Mar 24 2008 - 20:19:06 CDT)
- Axel Kohlmeyer (Mon Mar 24 2008 - 20:07:35 CDT)
- Axel Kohlmeyer (Mon Mar 24 2008 - 19:53:36 CDT)
- Axel Kohlmeyer (Mon Mar 24 2008 - 19:22:30 CDT)
- Irene Newhouse (Mon Mar 24 2008 - 19:26:00 CDT)
- Axel Kohlmeyer (Mon Mar 24 2008 - 17:43:28 CDT)
- Irene Newhouse (Mon Mar 24 2008 - 17:16:39 CDT)
Script to rendering ANISOU records in VMD
- Axel Kohlmeyer (Tue Jun 19 2007 - 22:08:55 CDT)
- Aaron Oakley (Tue Jun 19 2007 - 21:22:51 CDT)
script to resolve trajectory "jumps" on Desmond dynamic
- Peter Freddolino (Thu Mar 05 2009 - 10:43:18 CST)
- Nicola Giacche' (Thu Mar 05 2009 - 09:01:08 CST)
- Brittany Morgan (Wed Mar 04 2009 - 11:21:13 CST)
- Nicola Giacche' (Wed Mar 04 2009 - 10:15:03 CST)
script to visualize NMR constrains?
- John Stone (Fri Mar 23 2007 - 14:06:02 CDT)
- Marcela Madrid (Fri Mar 23 2007 - 13:45:46 CDT)
scriptable way to add hydrogens
- Axel Kohlmeyer (Sat Jan 31 2009 - 17:35:53 CST)
- Peter Freddolino (Sat Jan 31 2009 - 16:44:37 CST)
- Thomas Evangelidis (Sat Jan 31 2009 - 16:25:16 CST)
Scripting problem with h-bond listing
- Sanjeev (Mon Mar 19 2007 - 04:36:05 CDT)
- Axel Kohlmeyer (Sun Mar 18 2007 - 15:03:09 CDT)
- Sanjeev (Sun Mar 18 2007 - 14:16:42 CDT)
- John Stone (Sun Mar 18 2007 - 01:54:15 CDT)
- Sanjeev (Sun Mar 18 2007 - 01:30:53 CDT)
scripts CGTools
- Axel Kohlmeyer (Fri Feb 18 2011 - 07:25:44 CST)
- menica dibenedetto (Fri Feb 18 2011 - 05:11:05 CST)
scripts for binding free energy calculation using SMD and Jarzynski's equality
- Marc Q. Ma (Wed Aug 17 2005 - 09:45:12 CDT)
scripts in windows version
- John Stone (Wed Jan 17 2007 - 15:08:24 CST)
- Axel Kohlmeyer (Wed Jan 17 2007 - 14:47:48 CST)
- John Stone (Wed Jan 17 2007 - 12:01:20 CST)
- wurl (Tue Jan 16 2007 - 19:31:40 CST)
Scripts to color amino acids based on given properties
- Y Xu (Wed Mar 21 2001 - 08:22:31 CST)
Scripts to unwrap PBC from REMD trajectory
- Bob Johnson (Fri Mar 16 2007 - 09:05:18 CDT)
- Olaf Lenz (Fri Mar 16 2007 - 03:57:59 CDT)
- Olaf Lenz (Fri Mar 16 2007 - 02:52:57 CDT)
- Bob Johnson (Thu Mar 15 2007 - 16:08:50 CDT)
scrolling up in vmd console
- John Stone (Mon May 22 2006 - 15:18:01 CDT)
- Kenley Barrett (Sun May 21 2006 - 13:37:04 CDT)
search path and naming conventions for custom TCL scripts
- Eduard Schreiner (Wed May 03 2006 - 12:35:15 CDT)
- Axel Kohlmeyer (Wed May 03 2006 - 10:29:29 CDT)
- John Stone (Wed May 03 2006 - 10:12:03 CDT)
- Enzo Vitale (Wed May 03 2006 - 09:13:42 CDT)
Searching for Number of Resname
- Roman Petrenko (Thu Mar 26 2009 - 15:28:00 CDT)
- Giovanni Bellesia (Thu Mar 26 2009 - 15:16:25 CDT)
- Ocar Campos (Thu Mar 26 2009 - 15:21:28 CDT)
- Ocar Campos (Thu Mar 26 2009 - 14:51:44 CDT)
Secondary structure
- Robert Campbell (Fri Aug 23 2002 - 12:13:44 CDT)
- Justin Gullingsrud (Fri Aug 23 2002 - 09:49:03 CDT)
- Mark Hilge (Fri Aug 23 2002 - 09:18:52 CDT)
- Barry Isralewitz (Tue Dec 11 2001 - 11:46:33 CST)
- Nikolai Smolin (Tue Dec 11 2001 - 07:45:20 CST)
Secondary Structure along a trajectory
- John Stone (Thu Apr 27 2006 - 11:12:29 CDT)
- L. Michel Espinoza-Fonseca (Thu Apr 27 2006 - 10:30:29 CDT)
- Arneh Babakhani (Wed Apr 26 2006 - 18:44:21 CDT)
Secondary structure assignment
- sajad falsafi (Wed Feb 22 2012 - 01:39:07 CST)
- Peter C. Lai (Wed Feb 22 2012 - 00:31:39 CST)
- Zhuyi Xue (Tue Feb 21 2012 - 21:24:14 CST)
- John Stone (Mon Jul 17 2006 - 16:01:54 CDT)
- Melquiond (Mon Jul 17 2006 - 12:59:39 CDT)
- John Stone (Mon Jul 17 2006 - 10:40:43 CDT)
- Melquiond (Mon Jul 17 2006 - 09:23:03 CDT)
- John Stone (Tue May 30 2006 - 17:01:24 CDT)
- L. Michel Espinoza-Fonseca (Tue May 30 2006 - 16:53:51 CDT)
- Axel Kohlmeyer (Mon May 15 2006 - 04:52:05 CDT)
- Melquiond (Sun May 14 2006 - 15:34:43 CDT)
secondary structure assingnment
- John Stone (Tue Sep 20 2005 - 10:14:22 CDT)
- Michel Espinoza-Fonseca (Tue Sep 20 2005 - 07:22:07 CDT)
secondary structure calculation
- Axel Kohlmeyer (Thu Mar 29 2012 - 08:01:38 CDT)
- Ban Arn (Thu Mar 29 2012 - 05:05:38 CDT)
- Ban Arn (Wed Mar 28 2012 - 04:47:27 CDT)
- Axel Kohlmeyer (Tue Mar 27 2012 - 15:26:26 CDT)
- Barry Isralewitz (Tue Mar 27 2012 - 12:44:38 CDT)
- Ban Arn (Tue Mar 27 2012 - 11:55:24 CDT)
Secondary Structure Color Definitions
- Mark Formaneck (Mon Aug 22 2005 - 12:55:06 CDT)
- John Stone (Mon Aug 22 2005 - 11:00:12 CDT)
- Mark Formaneck (Sun Aug 21 2005 - 19:17:11 CDT)
secondary structure colors in timeline plugin
- Axel Kohlmeyer (Fri Sep 14 2007 - 07:46:50 CDT)
- cristiana.carellialinovi_at_rm.unicatt.it (Fri Sep 14 2007 - 07:51:31 CDT)
- cristiana.carellialinovi_at_rm.unicatt.it (Fri Sep 14 2007 - 06:24:30 CDT)
Secondary Structure Depiction
- Axel Kohlmeyer (Tue Apr 21 2009 - 14:07:41 CDT)
- Daniel Gaston (Tue Apr 21 2009 - 12:01:08 CDT)
- Daniel Gaston (Tue Apr 21 2009 - 12:02:29 CDT)
- Axel Kohlmeyer (Tue Apr 21 2009 - 11:23:10 CDT)
- John Stone (Tue Apr 21 2009 - 10:51:48 CDT)
- George Madalin Giambasu (Tue Apr 21 2009 - 11:12:54 CDT)
- Daniel Gaston (Tue Apr 21 2009 - 10:29:03 CDT)
- L. Michel Espinoza-Fonseca (Tue Apr 21 2009 - 10:33:50 CDT)
- Daniel Gaston (Tue Apr 21 2009 - 09:25:08 CDT)
Secondary Structure Disappears after Molecule Move
- John Stone (Mon May 16 2011 - 10:30:25 CDT)
- Qmer_AN?= (Mon May 16 2011 - 05:45:21 CDT)
Secondary structure elements in VMD
- Ajasja LjubetiÄ (Sat Nov 05 2011 - 03:00:01 CDT)
- Rabab Toubar (Sat Nov 05 2011 - 00:38:29 CDT)
- harish vashisth (Fri Nov 04 2011 - 19:37:43 CDT)
- Rabab Toubar (Fri Nov 04 2011 - 16:03:26 CDT)
Secondary Structure of alkane polymers
- Axel Kohlmeyer (Mon Jan 24 2011 - 21:27:07 CST)
- Axel Kohlmeyer (Mon Jan 24 2011 - 16:42:43 CST)
- Manish Agarwal (Mon Jan 24 2011 - 17:48:07 CST)
- Manish Agarwal (Mon Jan 24 2011 - 15:43:47 CST)
Secondary Structure Stays at the last frame
- h9826299_at_hkusua.hku.hk (Wed Jan 18 2006 - 16:19:52 CST)
- John Stone (Wed Jan 18 2006 - 16:04:52 CST)
- h9826299_at_hkusua.hku.hk (Wed Jan 18 2006 - 15:22:41 CST)
secondary structure update
- Brian Bennion (Mon Nov 03 2003 - 11:19:28 CST)
- Alan Wilter Sousa da Silva (Mon Nov 03 2003 - 04:16:27 CST)
- John Stone (Fri Oct 31 2003 - 12:37:52 CST)
- Brian Bennion (Fri Oct 31 2003 - 12:18:34 CST)
- Justin Gullingsrud (Fri Oct 31 2003 - 11:09:39 CST)
- Brian Bennion (Fri Oct 31 2003 - 10:12:40 CST)
- John Stone (Fri Oct 31 2003 - 09:45:07 CST)
- james tomomi macdonald (Fri Oct 31 2003 - 09:44:09 CST)
- Jérôme Hénin (Fri Oct 31 2003 - 07:37:31 CST)
Secondary structure with Timeline
- Florentina Tofoleanu (Tue Dec 01 2009 - 12:18:05 CST)
- John Stone (Tue Dec 01 2009 - 10:53:00 CST)
- Florentina Tofoleanu (Thu Nov 26 2009 - 06:19:15 CST)
secondary structure's display - problem
- Anna Modzelewska (Thu Jan 12 2006 - 10:21:07 CST)
- John Stone (Thu Jan 12 2006 - 10:12:47 CST)
- Vlad Cojocaru (Thu Jan 12 2006 - 06:43:06 CST)
- Anna Modzelewska (Thu Jan 12 2006 - 06:23:56 CST)
- Vlad Cojocaru (Wed Jan 11 2006 - 10:08:27 CST)
- John Stone (Wed Jan 11 2006 - 09:58:28 CST)
- Vlad Cojocaru (Wed Jan 11 2006 - 09:25:01 CST)
- Anna Modzelewska (Wed Jan 11 2006 - 09:03:28 CST)
- Vlad Cojocaru (Tue Jan 10 2006 - 11:08:43 CST)
- Anna Modzelewska (Tue Jan 10 2006 - 10:29:43 CST)
secondary_struct script
- John Stone (Wed Apr 18 2007 - 12:48:36 CDT)
- alexandra.marques_at_fc.up.pt (Wed Apr 18 2007 - 11:28:43 CDT)
seeing ions
- John Stone (Thu Jan 24 2002 - 13:23:46 CST)
segfault using VMD 1.8.6 32-bit Linux and chromium 1.9
- Chris Berthiaume (Tue Aug 26 2008 - 12:23:11 CDT)
- John Stone (Mon Aug 25 2008 - 22:45:15 CDT)
- Chris Berthiaume (Mon Aug 25 2008 - 20:50:12 CDT)
segid & chain id
- Francesco Pietra (Thu Mar 17 2011 - 11:05:17 CDT)
- John Stone (Thu Mar 17 2011 - 10:10:25 CDT)
- Francesco Pietra (Thu Mar 17 2011 - 02:27:23 CDT)
segid and geometry script
- Jan Saam (Wed Jun 25 2003 - 18:42:52 CDT)
- Jan Saam (Wed Jun 25 2003 - 18:33:35 CDT)
- Dominique Vlieghe (Wed Jun 25 2003 - 08:51:52 CDT)
segid WT100 is longer than 4 characters allowed by psf format
- Ramya Gamini (Wed Sep 16 2009 - 08:01:57 CDT)
- Luca Gelisio (Wed Sep 16 2009 - 03:34:16 CDT)
SEGMENT ID
- Deepak Singh (Fri Oct 22 1999 - 09:30:09 CDT)
- John Stone (Fri Oct 22 1999 - 09:21:01 CDT)
- Deepak Singh (Tue Oct 19 1999 - 23:45:46 CDT)
segment name limit with solvate and psfgen
- L. Michel Espinoza-Fonseca (Sat Aug 19 2006 - 23:30:06 CDT)
- Leonardo Trabuco (Sat Aug 19 2006 - 23:03:40 CDT)
- Thomas Caulfield (Sat Aug 19 2006 - 22:35:55 CDT)
Segmentation error!
- Andrew Dalke (Wed Apr 09 1997 - 10:46:36 CDT)
- Cheol Soon Lee (Wed Apr 09 1997 - 05:47:56 CDT)
- Cheol Soon Lee (Wed Apr 09 1997 - 05:46:34 CDT)
Segmentation fault on linux Fedora 11
- Axel Kohlmeyer (Mon Sep 14 2009 - 14:45:02 CDT)
- John Stone (Mon Sep 14 2009 - 14:08:35 CDT)
- Rob (Sun Sep 13 2009 - 19:16:28 CDT)
Segmentation fault when trying to load GROMACS trajectories
- Arneh Babakhani (Mon Jun 12 2006 - 14:10:19 CDT)
- John Stone (Mon Jun 12 2006 - 13:42:26 CDT)
- Arneh Babakhani (Mon Jun 12 2006 - 11:47:06 CDT)
segmentation fault with NAMDenergy
- John Stone (Thu Apr 19 2012 - 20:59:32 CDT)
- amin_at_imtech.res.in (Thu Apr 19 2012 - 20:12:53 CDT)
select atoms
- Axel Kohlmeyer (Mon Mar 02 2009 - 20:24:55 CST)
- bo baker (Mon Mar 02 2009 - 18:30:29 CST)
- Joaquim Rui Rodrigues (Mon Mar 02 2009 - 04:57:41 CST)
- bo baker (Sun Mar 01 2009 - 22:18:42 CST)
select atoms between molecules
- Karol Kaszuba (Wed Jan 02 2008 - 15:47:34 CST)
- Karol Kaszuba (Wed Jan 02 2008 - 13:10:04 CST)
- Axel Kohlmeyer (Wed Jan 02 2008 - 11:46:13 CST)
- Sampo Karkola (Wed Jan 02 2008 - 06:13:39 CST)
Select atoms using coordinates
- Axel Kohlmeyer (Thu Apr 23 2009 - 08:48:57 CDT)
- Max (Thu Apr 23 2009 - 03:15:15 CDT)
- John Stone (Wed Apr 22 2009 - 14:03:32 CDT)
- J. Rui Rodrigues (Wed Apr 22 2009 - 13:52:07 CDT)
- Rogan Carr (Wed Apr 22 2009 - 11:30:49 CDT)
- Max (Wed Apr 22 2009 - 06:09:16 CDT)
select cylindrical slab
- Axel Kohlmeyer (Fri Jun 27 2008 - 12:51:26 CDT)
- dimka (Fri Jun 27 2008 - 12:08:41 CDT)
- Peter Freddolino (Fri Jun 27 2008 - 12:34:01 CDT)
select each element of array
- Axel Kohlmeyer (Tue Sep 20 2011 - 07:20:43 CDT)
- Axel Kohlmeyer (Mon Sep 19 2011 - 20:18:35 CDT)
- kirtana S (Mon Sep 19 2011 - 20:29:25 CDT)
- kirtana S (Mon Sep 19 2011 - 17:31:43 CDT)
- Axel Kohlmeyer (Mon Sep 19 2011 - 12:10:44 CDT)
- kirtana S (Mon Sep 19 2011 - 11:11:59 CDT)
Select non-redundant set using struture Qr not working
- Kirby Vandivort (Tue Oct 19 2010 - 11:54:26 CDT)
- Raul Araya (Sun Oct 17 2010 - 18:52:00 CDT)
select only border of the water box
- Axel Kohlmeyer (Fri Aug 04 2006 - 07:01:53 CDT)
- andrea spitaleri (Fri Aug 04 2006 - 04:41:00 CDT)
select whole residues
- Axel Kohlmeyer (Tue Jan 03 2012 - 18:39:05 CST)
- Chris Harrison (Tue Jan 03 2012 - 18:37:13 CST)
- Peter C. Lai (Tue Jan 03 2012 - 17:50:00 CST)
select within distance range
- John Stone (Tue May 10 2005 - 13:18:13 CDT)
- YOLANDA SMALL (Tue May 10 2005 - 12:44:12 CDT)
- John Stone (Tue May 10 2005 - 10:36:24 CDT)
- YOLANDA SMALL (Mon May 09 2005 - 16:23:24 CDT)
Selected angles during build?
- Chang, Christopher (Thu Feb 03 2005 - 15:38:04 CST)
Selecting a laptop for VMD and NAMD
- PaweÅ‚ KÄ™dzierski (Wed Sep 28 2011 - 04:07:30 CDT)
Selecting a laptop for VMD and NAMD (was: CUDA cores seen by VMD on GT540M)
- Axel Kohlmeyer (Tue Sep 27 2011 - 10:36:20 CDT)
- PaweÅ‚ KÄ™dzierski (Tue Sep 27 2011 - 09:29:31 CDT)
Selecting AMBER ions Cl- and Na+ using VMD
- Balazs Jojart (Wed Mar 17 2010 - 13:29:27 CDT)
- Ajasja LjubetiÄ (Wed Mar 17 2010 - 09:31:12 CDT)
- Thomas C. Bishop (Wed Mar 17 2010 - 09:22:57 CDT)
- DimitryASuplatov (Wed Mar 17 2010 - 06:42:41 CDT)
Selecting Atomnumber
- John Stone (Wed Oct 04 2006 - 00:06:25 CDT)
- Jeffrey A Tibbitt (Tue Oct 03 2006 - 21:15:19 CDT)
selecting atoms
- Peter Freddolino (Tue Apr 24 2007 - 10:10:41 CDT)
- Nichols A. Romero (Tue Apr 24 2007 - 09:55:36 CDT)
Selecting atoms based on 'type' with LAMMPS + PSF
- Taco de Wolff (Mon Mar 28 2011 - 05:02:10 CDT)
Selecting atoms that have real SASA greater than 0, Not using "Surface"
- Axel Kohlmeyer (Tue Jul 29 2008 - 20:40:30 CDT)
- Christopher Gillespie (Tue Jul 29 2008 - 18:39:14 CDT)
- John Stone (Mon Jul 21 2008 - 10:22:51 CDT)
- Schreiner Eduard (Sun Jul 20 2008 - 22:03:40 CDT)
- Christopher Gillespie (Sun Jul 20 2008 - 16:28:04 CDT)
Selecting Atoms within a Volume, Manipulating Volumetric Data
- John Stone (Wed Oct 26 2011 - 21:43:49 CDT)
- Axel Kohlmeyer (Tue Oct 25 2011 - 08:03:13 CDT)
- Michael LeVine (Sun Oct 23 2011 - 14:24:20 CDT)
Selecting basic residues in g(r) GUI Plugin
- Rabab Toubar (Tue Jul 06 2010 - 10:47:06 CDT)
Selecting by X-coordinate
- Keith Battle (Tue Oct 12 2010 - 18:00:35 CDT)
- Keith Battle (Tue Oct 12 2010 - 17:31:02 CDT)
- John Stone (Tue Oct 12 2010 - 17:43:19 CDT)
selecting complete residues within perticular distance.
- Peter Freddolino (Mon May 28 2007 - 15:58:26 CDT)
- Cesar Luis Avila (Mon May 28 2007 - 14:04:32 CDT)
- Peter Freddolino (Sun May 27 2007 - 18:09:46 CDT)
- Cesar Luis Avila (Sun May 27 2007 - 16:06:29 CDT)
- naga raju (Fri May 25 2007 - 02:33:28 CDT)
Selecting CUDA devices in VMD 1.8.7
- John Stone (Wed May 26 2010 - 10:39:53 CDT)
- John Stone (Tue May 11 2010 - 22:07:03 CDT)
- Axel Kohlmeyer (Tue May 11 2010 - 20:08:25 CDT)
- Axel Kohlmeyer (Tue May 11 2010 - 19:19:21 CDT)
- John Stone (Tue May 11 2010 - 19:23:48 CDT)
- Joakim Swedberg (Tue May 11 2010 - 17:49:54 CDT)
selecting frames from trajectory
- Luis Gracia (Wed May 03 2006 - 19:17:09 CDT)
- John Stone (Wed May 03 2006 - 18:12:04 CDT)
- John Stone (Wed May 03 2006 - 17:52:21 CDT)
- Raul Araya Secchi (Wed May 03 2006 - 16:19:21 CDT)
selecting from different molecules simultaneously
- Axel Kohlmeyer (Thu May 06 2010 - 19:55:33 CDT)
- Axel Kohlmeyer (Wed May 05 2010 - 21:39:54 CDT)
- Fatemesadat Emami (Wed May 05 2010 - 18:35:26 CDT)
Selecting multiple ranges
- Salvatore Mario Cosseddu (Fri Jun 10 2011 - 11:20:21 CDT)
- Seibold, Stephen (Fri Jun 10 2011 - 10:05:21 CDT)
- John Stone (Fri Jun 10 2011 - 09:43:48 CDT)
- Seibold, Stephen (Fri Jun 10 2011 - 09:28:48 CDT)
selecting protein + water shell
- L. Michel Espinoza-Fonseca (Fri Mar 10 2006 - 10:02:32 CST)
- Marcos Sotomayor (Fri Mar 10 2006 - 10:00:13 CST)
- L. Michel Espinoza-Fonseca (Fri Mar 10 2006 - 09:43:34 CST)
Selecting residues by number
- John Stone (Wed Aug 17 2005 - 18:51:45 CDT)
- John Stone (Wed Aug 17 2005 - 18:45:02 CDT)
- John Stone (Wed Aug 17 2005 - 18:14:32 CDT)
- Mihaly Mezei (Wed Aug 17 2005 - 17:46:13 CDT)
selecting ribose atoms?
- Axel Kohlmeyer (Fri May 01 2009 - 19:48:34 CDT)
- Samuel Coulbourn Flores (Fri May 01 2009 - 19:59:48 CDT)
- Samuel Coulbourn Flores (Fri May 01 2009 - 18:47:46 CDT)
selecting set of residue
- Falgun Shah (Mon Feb 02 2009 - 14:44:45 CST)
Selecting some atoms and changing the color of them
- Peter Freddolino (Tue Oct 21 2008 - 07:24:08 CDT)
- Iman Salehinia (Tue Oct 21 2008 - 01:55:03 CDT)
Selecting the "n" closest waters
- Gustavo Seabra (Thu Jul 13 2006 - 16:59:58 CDT)
- John Stone (Thu Jul 13 2006 - 16:53:32 CDT)
- Gustavo Seabra (Thu Jul 13 2006 - 16:39:59 CDT)
- John Stone (Thu Jul 13 2006 - 15:58:49 CDT)
- Gustavo Seabra (Thu Jul 13 2006 - 12:39:31 CDT)
Selecting the N-closest Waters
- Claw Isthelaw (Mon Jun 02 2008 - 13:25:51 CDT)
- Axel Kohlmeyer (Tue Aug 21 2007 - 20:35:16 CDT)
- J T (Tue Aug 21 2007 - 20:00:47 CDT)
- Axel Kohlmeyer (Tue Aug 21 2007 - 18:23:55 CDT)
- Axel Kohlmeyer (Tue Aug 21 2007 - 19:26:57 CDT)
- J T (Tue Aug 21 2007 - 18:54:08 CDT)
- Nuno Loureiro Ferreira (Tue Aug 21 2007 - 16:34:25 CDT)
- J T (Tue Aug 21 2007 - 16:10:03 CDT)
- Nuno Loureiro Ferreira (Tue Aug 21 2007 - 15:55:13 CDT)
- J T (Tue Aug 21 2007 - 12:40:19 CDT)
Selecting the sides of a benzene ring
- John Stone (Wed Jul 30 2008 - 10:31:50 CDT)
- Ignacio Fernández Galván (Wed Jul 30 2008 - 02:24:58 CDT)
- John Stone (Wed Jul 23 2008 - 09:15:18 CDT)
- Axel Kohlmeyer (Wed Jul 23 2008 - 06:36:25 CDT)
- Ignacio Fernández Galván (Wed Jul 23 2008 - 02:39:23 CDT)
- Axel Kohlmeyer (Tue Jul 22 2008 - 11:45:54 CDT)
- Schreiner Eduard (Tue Jul 22 2008 - 11:01:39 CDT)
- Eduardo Cruz-Chu (Tue Jul 22 2008 - 11:21:42 CDT)
- Ignacio Fernández Galván (Tue Jul 22 2008 - 06:30:21 CDT)
Selecting water molecules within 5 ang in a trajectory( generated by amber).
- naga raju (Sat Dec 29 2007 - 00:02:12 CST)
- Axel Kohlmeyer (Wed Dec 26 2007 - 14:12:05 CST)
- Thomas Evangelidis (Wed Dec 26 2007 - 09:49:31 CST)
- naga raju (Wed Dec 26 2007 - 01:01:50 CST)
selecting waters
- cmhartshorn (Mon May 11 2009 - 17:31:55 CDT)
- Axel Kohlmeyer (Mon May 11 2009 - 13:11:50 CDT)
- Rogan Carr (Mon May 11 2009 - 12:53:28 CDT)
- Mark M Huntress (Mon May 11 2009 - 12:35:10 CDT)
selection
- Chris Harrison (Mon Oct 31 2011 - 17:03:55 CDT)
- matziast_at_med.uth.gr (Mon Oct 31 2011 - 16:15:54 CDT)
- John Stone (Mon Oct 31 2011 - 16:00:46 CDT)
- matziast_at_med.uth.gr (Mon Oct 31 2011 - 16:23:38 CDT)
- matziast_at_med.uth.gr (Mon Oct 31 2011 - 15:57:03 CDT)
- matziast_at_med.uth.gr (Mon Oct 31 2011 - 15:50:58 CDT)
- Chris Harrison (Mon Oct 31 2011 - 15:13:57 CDT)
- John Stone (Mon Oct 31 2011 - 14:39:13 CDT)
- matziast_at_med.uth.gr (Mon Oct 31 2011 - 13:39:43 CDT)
- matziast_at_med.uth.gr (Mon Oct 31 2011 - 12:45:50 CDT)
- Andrew Dalke (Fri Jul 25 2003 - 18:22:25 CDT)
- Ioana Cozmuta (Fri Jul 25 2003 - 17:38:46 CDT)
- Deepak Singh (Tue Oct 17 2000 - 11:51:33 CDT)
- John Stone (Tue Oct 17 2000 - 11:42:30 CDT)
- Deepak Singh (Tue Oct 17 2000 - 11:31:12 CDT)
- Sergei Izrailev (Tue Oct 17 2000 - 11:28:18 CDT)
- Deepak Singh (Tue Oct 17 2000 - 11:08:51 CDT)
Selection "@myselection"
- John Stone (Tue May 05 2009 - 10:17:57 CDT)
- Olaf Lenz (Thu Apr 30 2009 - 04:25:05 CDT)
Selection "within x of something" is not updated throughout DCD trajectory?
- John Stone (Thu Mar 27 2008 - 14:04:35 CDT)
- Maxim Paliy (Thu Mar 27 2008 - 13:59:25 CDT)
selection and coloring
- John Stone (Tue Mar 05 2002 - 10:35:48 CST)
- Fei Xu (Mon Mar 04 2002 - 10:06:35 CST)
Selection basing on the number of hydrogen bonds
- Tatyana Kuznetsova (Thu Jun 09 2005 - 02:30:14 CDT)
selection by residue
- Nicolas (Thu Mar 05 2009 - 10:34:05 CST)
- Marius Retegan (Thu Mar 05 2009 - 08:29:28 CST)
- Marius Retegan (Thu Mar 05 2009 - 06:47:53 CST)
selection for polar hydrogens only
- poker_at_physics.usyd.edu.au (Wed Aug 26 2009 - 02:05:44 CDT)
- Schreiner Eduard (Tue Aug 25 2009 - 22:50:43 CDT)
- poker_at_physics.usyd.edu.au (Tue Aug 25 2009 - 22:13:26 CDT)
selection in different pcb images
- John Stone (Thu Apr 13 2006 - 00:09:46 CDT)
- dimka (Tue Apr 11 2006 - 15:02:37 CDT)
Selection in VMD Graphical representation
- John Stone (Wed Feb 20 2008 - 13:32:03 CST)
- Axel Kohlmeyer (Wed Feb 20 2008 - 12:05:29 CST)
- Pavan Ghatty (Wed Feb 20 2008 - 10:22:03 CST)
selection of 2 molecules
- John Stone (Wed Oct 20 2004 - 14:32:47 CDT)
- Volodymyr Zloy (Wed Oct 20 2004 - 08:25:16 CDT)
selection of amino acids with certain distance each others
- Joshua Adelman (Sun Dec 19 2010 - 15:00:40 CST)
- Francesco Oteri (Sun Dec 19 2010 - 14:39:53 CST)
- Ajasja LjubetiÄ (Sun Dec 19 2010 - 14:07:03 CST)
- Axel Kohlmeyer (Sun Dec 19 2010 - 13:59:02 CST)
- leila karami (Sun Dec 19 2010 - 13:00:23 CST)
Selection of atoms and bond specific to MD snapshot
- Axel Kohlmeyer (Sat Nov 06 2004 - 15:12:35 CST)
- Sanjeev B.S. (Sat Nov 06 2004 - 10:58:40 CST)
selection of atoms on INSIDE protein
- Anthony Cruz (Mon Mar 06 2006 - 11:26:12 CST)
- Anthony Cruz (Mon Mar 06 2006 - 10:20:08 CST)
- John Stone (Wed Mar 01 2006 - 16:44:04 CST)
- ziemys_at_ecr6.ohio-state.edu (Tue Feb 28 2006 - 18:50:00 CST)
Selection of residues in a trajectory
- amit_at_mbu.iisc.ernet.in (Tue Oct 31 2006 - 13:50:23 CST)
selection of sugars with VMD
- John Stone (Tue Aug 02 2011 - 17:09:34 CDT)
- Molybdos Kirkimpolakis (Tue Aug 02 2011 - 14:11:49 CDT)
Selection problem on TkCon
- Ahmet Bakan (Tue May 04 2004 - 18:57:39 CDT)
- Justin Gullingsrud (Tue May 04 2004 - 15:07:44 CDT)
- Brian Bennion (Tue May 04 2004 - 13:20:20 CDT)
- Mike McCallum (Tue May 04 2004 - 11:27:01 CDT)
- Ahmet Bakan (Tue May 04 2004 - 06:47:55 CDT)
- Brian Bennion (Mon May 03 2004 - 14:14:10 CDT)
- Ahmet Bakan (Mon May 03 2004 - 13:42:43 CDT)
- Justin Gullingsrud (Mon May 03 2004 - 10:46:33 CDT)
- Brian Bennion (Mon May 03 2004 - 10:14:02 CDT)
- Ahmet Bakan (Mon May 03 2004 - 05:56:25 CDT)
- Justin Gullingsrud (Mon May 03 2004 - 03:35:50 CDT)
- Ahmet Bakan (Sun May 02 2004 - 19:55:43 CDT)
selection question
- Justin Gullingsrud (Thu Aug 15 2002 - 08:51:05 CDT)
- Vlad Cojocaru (Thu Aug 15 2002 - 07:28:58 CDT)
selection syntax
- Anton Arkhipov (Mon Mar 30 2009 - 09:03:47 CDT)
- Leonardo Trabuco (Mon Mar 30 2009 - 09:10:29 CDT)
- Peter Jones (Mon Mar 30 2009 - 01:54:32 CDT)
Selection tool
- Narasimhan LOGANATHAN (Tue Jan 19 2010 - 03:06:21 CST)
selection update
- John Stone (Fri Jun 26 2009 - 14:26:51 CDT)
- kumar prashanth (Fri Jun 26 2009 - 08:03:21 CDT)
Selection within VMD
- Axel Kohlmeyer (Wed Aug 22 2007 - 14:12:59 CDT)
- Olaf Lenz (Wed Aug 22 2007 - 15:36:09 CDT)
- John Stone (Wed Aug 22 2007 - 15:04:15 CDT)
- Mark Zottola (Wed Aug 22 2007 - 14:28:53 CDT)
Selections based on "bonded to"
- John Stone (Fri Oct 23 2009 - 13:39:08 CDT)
- John Stone (Fri Oct 23 2009 - 11:13:51 CDT)
- Schmidt, Mike (Fri Oct 23 2009 - 10:56:00 CDT)
Selections in periodic boxes
- Nicolas Sapay (Mon Mar 06 2006 - 09:13:38 CST)
- Ignacio Fernández Galván (Thu Feb 16 2006 - 05:24:07 CST)
Self Assembled Monolayer
- Daniel Schwaab (Tue May 31 2005 - 09:48:06 CDT)
self-coeeficient diffusion
- nicolas.floquet_at_univ-reims.fr (Fri Jun 01 2007 - 07:41:27 CDT)
Seminars Trainings
- Christian Wohlschlager (Wed Nov 24 2010 - 02:37:48 CST)
send data on demand using IMD?
- John Stone (Fri Nov 14 2003 - 10:24:05 CST)
- Jan Saam (Thu Nov 13 2003 - 11:59:10 CST)
sending arguments to tcl
- _at_huji.ac.il (Sun Feb 04 2007 - 02:21:02 CST)
- John Stone (Thu Feb 01 2007 - 16:53:24 CST)
- Axel Kohlmeyer (Thu Feb 01 2007 - 15:55:30 CST)
- John Stone (Thu Feb 01 2007 - 14:56:00 CST)
- _at_huji.ac.il (Thu Feb 01 2007 - 13:39:20 CST)
Separate graphical objects?
- Justin Gullingsrud (Sat Aug 17 2002 - 12:01:07 CDT)
- Pawel Kedzierski (Sat Aug 17 2002 - 11:36:24 CDT)
- Justin Gullingsrud (Thu Aug 15 2002 - 16:05:55 CDT)
- Pawel Kedzierski (Wed Aug 14 2002 - 23:40:31 CDT)
Sequence Menu For Nucleic Acids
- Patrick Ladam (Mon May 19 2003 - 08:55:45 CDT)
Sequences and BLAST searching
- Elijah Roberts (Wed Nov 15 2006 - 12:05:57 CST)
- Baxy (Wed Nov 15 2006 - 06:51:22 CST)
- Baxy (Wed Nov 15 2006 - 06:47:08 CST)
sequential multiple structures
- Axel Kohlmeyer (Fri Sep 29 2006 - 07:25:23 CDT)
- jiwu liu (Thu Sep 28 2006 - 17:50:15 CDT)
Sequentially numbering atom names in pdb file
- Axel Kohlmeyer (Wed Nov 05 2008 - 16:24:57 CST)
- Robert Brunner (Wed Nov 05 2008 - 16:02:54 CST)
- Subramanian Vaitheeswaran (Wed Nov 05 2008 - 14:29:24 CST)
Server for structural models of the unfolded state of proteins
- Joshua Adelman (Fri Feb 25 2011 - 20:53:53 CST)
- Axel Kohlmeyer (Fri Feb 25 2011 - 19:48:08 CST)
- Samy Hamdouche (Fri Feb 25 2011 - 19:03:15 CST)
set a different beta field for each frame of trajectory
- John Stone (Tue Mar 15 2005 - 10:03:49 CST)
- Vlad Cojocaru (Tue Mar 15 2005 - 08:02:02 CST)
setbonds
- BIN ZHANG (Wed Apr 22 2009 - 14:53:11 CDT)
- Rogan Carr (Wed Apr 22 2009 - 11:29:32 CDT)
- John Stone (Tue Apr 21 2009 - 23:44:35 CDT)
- zhngbn_at_gmail.com (Tue Apr 21 2009 - 23:48:30 CDT)
- BIN ZHANG (Tue Apr 21 2009 - 23:01:35 CDT)
setenv: Too many arguments
- Balazs Jojart (Sat Oct 16 2010 - 00:53:21 CDT)
- Balazs Jojart (Fri Oct 15 2010 - 16:34:52 CDT)
- John Stone (Fri Oct 15 2010 - 16:42:00 CDT)
Setting colors
- Justin Gullingsrud (Fri Feb 18 2000 - 10:25:50 CST)
- Timm Essigke (Thu Feb 17 2000 - 16:04:33 CST)
Setting default viewing window location in XP
- John Stone (Tue Oct 14 2003 - 11:03:04 CDT)
- Dallas Warren (Mon Oct 13 2003 - 19:40:48 CDT)
setting different bond length for different atom pair
- John Stone (Fri Apr 15 2011 - 16:24:55 CDT)
- Debasis Sengupta (Thu Apr 14 2011 - 12:07:56 CDT)
- Axel Kohlmeyer (Fri Feb 11 2011 - 13:00:56 CST)
- Debasis Sengupta (Fri Feb 11 2011 - 12:01:44 CST)
setting different colors
- Justin Gullingsrud (Sun Aug 21 2005 - 15:55:04 CDT)
- Jaime Sanchez (Thu Aug 18 2005 - 23:33:32 CDT)
Setting modstyle volumeslice options via tk console
- Axel Kohlmeyer (Wed Jul 18 2007 - 16:27:47 CDT)
- Cesar Luis Avila (Wed Jul 18 2007 - 15:16:20 CDT)
Setting number of water molecules for the given box dimension
- jestin mandumpal (Thu Oct 18 2007 - 22:01:57 CDT)
Setting the speed of rotation
- John Stone (Tue Apr 19 2005 - 10:28:58 CDT)
- Palmer, Teresa (Mon Apr 18 2005 - 11:27:26 CDT)
setting unit cell dimensions
- Axel Kohlmeyer (Mon Oct 15 2007 - 03:54:49 CDT)
- Olaf Lenz (Mon Oct 15 2007 - 02:43:47 CDT)
- bbickmore_at_comcast.net (Sun Oct 14 2007 - 23:07:50 CDT)
Seventh European Workshop in Drug Design - Siena
- Lucilla Angeli (Thu Mar 05 2009 - 06:42:36 CST)
several cmds to read structure and trajectory files
- John Stone (Thu Sep 15 2005 - 11:19:43 CDT)
- Jian Zou (Wed Sep 14 2005 - 08:19:33 CDT)
several coor files from dcd file
- John Stone (Thu Sep 15 2005 - 10:54:59 CDT)
- Ya.Shashel (Thu Sep 15 2005 - 06:18:23 CDT)
Several molecules
- John Stone (Tue May 20 2008 - 10:21:03 CDT)
- paquotau_at_loria.fr (Tue May 20 2008 - 10:17:18 CDT)
several questions,
- John Stone (Thu Oct 05 2000 - 16:43:57 CDT)
- Bettler Emmanuel (Tue Sep 26 2000 - 07:01:11 CDT)
SGI O2 stereo problems
- Ben Cornett (Thu Mar 09 2000 - 12:13:20 CST)
- Bogdan Costescu (Thu Mar 09 2000 - 08:00:27 CST)
- John Stone (Wed Mar 08 2000 - 15:04:34 CST)
- Bogdan Costescu (Wed Mar 08 2000 - 14:43:38 CST)
- Bogdan Costescu (Tue Feb 15 2000 - 13:33:15 CST)
SGI problem!
- Emmanuel Vamvakopoulos (Fri Oct 29 1999 - 07:57:27 CDT)
shades of licorice representation
- Axel Kohlmeyer (Wed Jul 20 2011 - 08:57:58 CDT)
- maria goranovic (Wed Jul 20 2011 - 05:28:48 CDT)
- Mark Cunningham (Tue Jul 19 2011 - 15:19:53 CDT)
- Hurt, Darrell (NIH/NIAID) [E] (Tue Jul 19 2011 - 15:24:26 CDT)
- Hurt, Darrell (NIH/NIAID) [E] (Tue Jul 19 2011 - 14:24:42 CDT)
- Mark Cunningham (Tue Jul 19 2011 - 11:53:54 CDT)
- Boris Steipe (Tue Jul 19 2011 - 10:10:01 CDT)
- Axel Kohlmeyer (Tue Jul 19 2011 - 10:02:52 CDT)
- Axel Kohlmeyer (Tue Jul 19 2011 - 08:44:13 CDT)
- maria goranovic (Tue Jul 19 2011 - 08:52:19 CDT)
- maria goranovic (Tue Jul 19 2011 - 07:53:52 CDT)
shake vs. rigidbonds
- Sheldon Park (Thu Jul 29 2004 - 14:29:12 CDT)
SHAKE/namd
- Justin Gullingsrud (Thu Jan 16 2003 - 23:23:33 CST)
- John Stone (Thu Jan 16 2003 - 20:54:37 CST)
- Ioana Cozmuta (Thu Jan 16 2003 - 20:20:05 CST)
sharing atoms
- Axel Kohlmeyer (Mon May 16 2011 - 09:43:13 CDT)
- beyza bilgic (Mon May 16 2011 - 08:52:33 CDT)
Sharp 3D stereo monitors
- John Stone (Mon Sep 20 2004 - 09:04:07 CDT)
- Mads Nørregaard-Madsen (Mon Sep 20 2004 - 06:11:02 CDT)
shifting of the origin
- Bhaskar Jyoti Borah (Thu Jul 12 2007 - 01:07:36 CDT)
- Bhaskar Jyoti Borah (Wed Jul 11 2007 - 23:33:22 CDT)
- John Stone (Wed Jul 11 2007 - 23:56:48 CDT)
- Bhaskar Jyoti Borah (Wed Jul 11 2007 - 11:24:15 CDT)
- Axel Kohlmeyer (Wed Jul 11 2007 - 10:49:47 CDT)
- Axel Kohlmeyer (Wed Jul 11 2007 - 09:22:41 CDT)
- Bhaskar Jyoti Borah (Tue Jul 10 2007 - 23:49:15 CDT)
shifting the origin of the box
- John Stone (Mon Jun 28 2004 - 15:24:24 CDT)
- Vani Krishna (Mon Jun 28 2004 - 13:38:17 CDT)
Show a movie from one static structure to another in VMD?
- Dallas B. Warren (Wed Oct 12 2005 - 19:51:36 CDT)
- John Stone (Wed Oct 12 2005 - 17:01:22 CDT)
- Mingliang Tan (Wed Oct 12 2005 - 12:58:55 CDT)
show atom number in xyz file
- John Stone (Wed Jun 13 2007 - 02:52:12 CDT)
- Petrica GASCA (Wed Jun 06 2007 - 10:24:47 CDT)
- JC Gumbart (Tue May 22 2007 - 11:59:35 CDT)
- Axel Kohlmeyer (Tue May 22 2007 - 07:33:34 CDT)
- Petrica GASCA (Tue M

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