VMD-L Mailing List

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About this archive

Starting: Thu Dec 19 1996 - 11:40:41 CST
Ending: Sat Jul 05 2008 - 17:08:21 CDT

Peter Freddolino (Mon Jan 28 2008 - 08:56:39 CST)

Axel Kohlmeyer (Fri May 25 2007 - 11:00:48 CDT)

Peter Freddolino (Thu May 17 2007 - 11:21:41 CDT)

Axel Kohlmeyer (Thu May 03 2007 - 17:00:48 CDT)

morten østergaard jensen (Tue Aug 22 2006 - 10:02:19 CDT)

Axel Kohlmeyer (Tue Aug 22 2006 - 07:46:27 CDT)

Peter Freddolino (Tue Aug 22 2006 - 07:36:35 CDT)

John Stone (Tue Aug 08 2006 - 11:08:08 CDT)

John Stone (Wed Jun 21 2006 - 13:21:42 CDT)

snoze pa (Tue Jun 06 2006 - 17:47:34 CDT)

John Stone (Tue Jun 06 2006 - 12:59:57 CDT)

John Stone (Wed Mar 01 2006 - 14:56:46 CST)

John Stone (Fri Oct 14 2005 - 14:46:53 CDT)

Chang, Christopher (Mon Jul 18 2005 - 16:32:09 CDT)

Blake Charlebois (Mon Jul 18 2005 - 16:26:56 CDT)

John Stone (Tue Jun 21 2005 - 17:23:53 CDT)

Jim Phillips (Thu Apr 07 2005 - 11:10:45 CDT)

John Stone (Wed Apr 06 2005 - 15:05:52 CDT)

John Stone (Mon Feb 28 2005 - 12:12:13 CST)

John Stone (Mon Feb 28 2005 - 10:13:25 CST)

John Stone (Mon Feb 21 2005 - 12:05:33 CST)

John Stone (Thu Feb 17 2005 - 16:42:44 CST)

Brian Bennion (Tue Dec 14 2004 - 12:47:07 CST)

Charles McCallum (Wed Nov 17 2004 - 22:21:11 CST)

John Stone (Mon Sep 20 2004 - 13:26:17 CDT)

John Stone (Mon Jul 05 2004 - 14:31:03 CDT)

John Stone (Mon Jul 05 2004 - 13:57:46 CDT)

John Stone (Wed Jun 30 2004 - 17:16:57 CDT)

John Stone (Sat Apr 24 2004 - 15:41:39 CDT)

John Stone (Mon Apr 12 2004 - 21:59:15 CDT)

John Stone (Wed Nov 19 2003 - 10:36:55 CST)

John Stone (Wed Nov 19 2003 - 10:22:01 CST)

Eugen Leitl (Wed Nov 19 2003 - 04:13:28 CST)

John Stone (Thu Nov 06 2003 - 09:26:23 CST)

! Obtain degrees from Prestigious non-accredite dUniversities
- 1(484)993-7152 Marty (Sat Jun 23 2007 - 01:45:28 CDT)
"animate readdel"? (was: multiple automated calls to NAMD)
- John Stone (Tue Jun 21 2005 - 17:42:11 CDT)
- nordgren_at_sas.upenn.edu (Wed Jun 15 2005 - 08:15:10 CDT)
- nordgren_at_sas.upenn.edu (Tue Jun 14 2005 - 03:09:48 CDT)
"cartoon" failing to show secondary structure
- Kenley Barrett (Fri Dec 15 2006 - 11:27:30 CST)
- John Stone (Fri Dec 15 2006 - 11:13:05 CST)
- Kenley Barrett (Thu Dec 14 2006 - 18:31:09 CST)
"cartoon" failing to show secondary structure--more info
- John Stone (Fri Dec 15 2006 - 14:08:59 CST)
- Kenley Barrett (Fri Dec 15 2006 - 12:39:54 CST)
"Distributed Cavelib" VMD port
- John Stone (Fri Sep 12 2003 - 11:15:00 CDT)
- Romaric David (Fri Sep 12 2003 - 09:01:33 CDT)
"Draw" different things in different frames
- Axel Kohlmeyer (Sun Apr 17 2005 - 03:07:11 CDT)
- Kiniu Wong (Sat Apr 16 2005 - 20:16:02 CDT)
"get {x y z}" returns single value
- Olaf Lenz (Fri Feb 23 2007 - 11:16:30 CST)
- Axel Kohlmeyer (Fri Feb 23 2007 - 11:10:04 CST)
- Ivan Degtyarenko (Fri Feb 23 2007 - 10:18:16 CST)
"Hands-On" Workshop on Computational Biophysics
- David Brandon (Tue Mar 08 2005 - 11:54:35 CST)
"measure fit" inaccuracy?
- John Stone (Fri Jun 11 2004 - 10:16:03 CDT)
- Justin Gullingsrud (Fri Jun 11 2004 - 10:07:54 CDT)
- Jérôme Hénin (Fri Jun 11 2004 - 09:34:45 CDT)
- John Stone (Fri Jun 11 2004 - 09:04:43 CDT)
- Jérôme Hénin (Fri Jun 11 2004 - 02:48:49 CDT)
"Not all atoms have unique coordinates"
- Nitin Bhardwaj (Fri Jan 05 2007 - 12:31:18 CST)
"nucleic" selection
- Andrew Dalke (Wed Nov 12 2003 - 13:29:15 CST)
- Vlad Cojocaru (Wed Nov 12 2003 - 10:45:47 CST)
- Vlad Cojocaru (Wed Nov 12 2003 - 09:17:56 CST)
- Vlad Cojocaru (Wed Nov 12 2003 - 04:55:26 CST)
"Pick item mode" inactive in OSX bundle ?
- John Stone (Thu Oct 03 2002 - 08:47:32 CDT)
- Christian Simon (Thu Oct 03 2002 - 07:44:53 CDT)
"same as" failing?
- Luis Gracia (Mon Oct 25 2004 - 14:45:54 CDT)
- John Stone (Mon Oct 25 2004 - 13:49:14 CDT)
- Luis Gracia (Mon Oct 25 2004 - 13:42:37 CDT)
"Selection not understood"
- John Stone (Fri Jul 16 2004 - 13:18:59 CDT)
- Olaf Lenz (Fri Jul 16 2004 - 09:47:04 CDT)
"tight" selection
- John Stone (Tue Jun 06 2006 - 13:14:42 CDT)
"truncate_trajectory" a new plugin
- Èùìáò Åõáããåëéäçò (Fri Sep 14 2007 - 10:01:23 CDT)
"Unable to create OpenGL window"
- Axel Kohlmeyer (Tue Jul 18 2006 - 15:41:35 CDT)
- César Dp (Tue Jul 18 2006 - 15:20:55 CDT)
"which files to make a spatial grid?" => Bug for list command?
- John Stone (Tue Apr 17 2007 - 13:11:52 CDT)
- Axel Kohlmeyer (Tue Apr 17 2007 - 07:25:11 CDT)
- Philipp Schoen1 (Tue Apr 17 2007 - 07:03:46 CDT)
# of waters limit
- Justin Gullingsrud (Tue Mar 22 2005 - 18:09:26 CST)
- dimka (Tue Mar 22 2005 - 15:19:51 CST)
$64k/yr hpc post-doc@lanl
- Kevin Y. Sanbonmatsu (Sun Feb 12 2006 - 19:05:34 CST)
'gopython' Tkinter and Numeric Python error
- John Stone (Wed Jan 30 2008 - 10:29:49 CST)
- brmorgan_at_clarku.edu (Mon Jan 28 2008 - 09:55:36 CST)
'SURF' representation problem
- John Stone (Sun Apr 08 2007 - 13:47:34 CDT)
- dimka (Sun Apr 08 2007 - 13:22:11 CDT)
- John Stone (Thu Mar 29 2007 - 18:26:50 CDT)
- hl332_at_drexel.edu (Thu Mar 29 2007 - 18:09:43 CDT)
- John Stone (Thu Mar 29 2007 - 16:10:43 CDT)
- hl332_at_drexel.edu (Thu Mar 29 2007 - 16:04:02 CDT)
'topology' command crashes vmd 1.8 (LINUX)
- John Stone (Wed Mar 05 2003 - 09:57:56 CST)
- Patrick Ladam (Wed Mar 05 2003 - 06:22:43 CST)
'within' command in VMD
- Axel Kohlmeyer (Sun May 11 2008 - 13:22:18 CDT)
- John Stone (Sun May 11 2008 - 13:12:48 CDT)
- Neelanjana Sengupta (Sun May 11 2008 - 12:35:35 CDT)
- John Stone (Sun May 11 2008 - 10:54:53 CDT)
- Axel Kohlmeyer (Sun May 11 2008 - 03:35:53 CDT)
- Neelanjana Sengupta (Sun May 11 2008 - 02:04:57 CDT)
'wrap' any kind of solvent
- Jim Phillips (Mon Dec 03 2001 - 11:14:50 CST)
- Reuter Nathalie (Mon Dec 03 2001 - 03:20:45 CST)
(); [Fwd: PET force field & topolgy files etc.]
- Peter Freddolino (Thu Dec 28 2006 - 15:46:31 CST)
- wolfinbm_at_uci.edu (Wed Dec 27 2006 - 14:23:22 CST)
(forwarded) cylinder drawing bug in 1.7b1 on NT?
- John Stone (Fri Jul 20 2001 - 10:20:06 CDT)
(forwarded) Modifying a Tcl script
- John Stone (Fri Jul 20 2001 - 10:17:04 CDT)
(fwd) vmd 1.7b1 sequence window disappeares
- John Stone (Mon Jul 23 2001 - 09:59:20 CDT)
(no subject)
- paquotau_at_loria.fr (Wed May 21 2008 - 08:12:51 CDT)
- politr_at_huji.ac.il (Tue Apr 29 2008 - 05:49:41 CDT)
- mbyr8097_at_mail.usyd.edu.au (Mon Jan 28 2008 - 19:02:49 CST)
- Steve Seibold (Mon Jan 28 2008 - 08:39:37 CST)
- Syed Tarique Moin (Mon Nov 26 2007 - 06:25:08 CST)
- ZT Yew (Wed Oct 17 2007 - 18:26:24 CDT)
- AustinSmall_at_comcast.net (Thu Jul 26 2007 - 16:06:23 CDT)
- Lechuga, Javier (Fri May 25 2007 - 08:10:27 CDT)
- Lechuga, Javier (Thu May 17 2007 - 09:40:07 CDT)
- lanhua (Thu May 03 2007 - 16:30:24 CDT)
- Stephen M. Dutz (Wed Feb 21 2007 - 15:40:45 CST)
- Prevost Martine (Thu Jan 25 2007 - 04:41:37 CST)
- Lechuga, Javier (Tue Aug 22 2006 - 06:12:20 CDT)
- Hai-Jun Su (Tue Aug 08 2006 - 10:30:27 CDT)
- Hai-Jun Su (Wed Jun 21 2006 - 12:22:29 CDT)
- John Stone (Tue Jun 13 2006 - 11:47:30 CDT)
- Zara Sands (Mon Jun 12 2006 - 06:36:34 CDT)
- Sam Ansari (Tue Jun 06 2006 - 06:13:16 CDT)
- ziemys_at_ecr6.ohio-state.edu (Mon May 08 2006 - 09:41:21 CDT)
- Naser, Md Abu (Wed Mar 01 2006 - 14:17:10 CST)
- Naser, Md Abu (Fri Oct 14 2005 - 14:12:44 CDT)
- Yifat Brill (Tue Sep 27 2005 - 07:03:33 CDT)
- Demetrios Braddock (Thu Sep 15 2005 - 18:40:47 CDT)
- Sale, Kenneth L (Mon Jul 18 2005 - 14:48:01 CDT)
- Simon Whitehead (Tue Jun 14 2005 - 05:34:53 CDT)
- ËïÍ¢ (Wed Apr 06 2005 - 08:58:13 CDT)
- matteo.pennestri_at_virgilio.it (Thu Feb 24 2005 - 09:11:19 CST)
- matteo.pennestri_at_virgilio.it (Wed Feb 23 2005 - 04:44:47 CST)
- James Stevens (Fri Feb 18 2005 - 14:24:19 CST)
- Francis Reyes (Thu Feb 17 2005 - 16:33:15 CST)
- dtp3+_at_pitt.edu (Mon Jan 03 2005 - 14:33:55 CST)
- Eunice Ramirez Melendez (Mon Dec 13 2004 - 19:20:55 CST)
- Paul Whitford (Wed Nov 17 2004 - 19:01:11 CST)
- mdcooper (Mon Sep 20 2004 - 13:14:02 CDT)
- Karunesh Arora (Thu Jul 29 2004 - 10:09:40 CDT)
- ying xiong (Thu Jul 01 2004 - 05:57:28 CDT)
- Sardiu, Mihaela (NIH/NLM/NCBI) (Wed Jun 30 2004 - 17:28:42 CDT)
- Sardiu, Mihaela (NIH/NLM/NCBI) (Wed Jun 30 2004 - 17:08:09 CDT)
- Heshe Peshkin (Tue Jun 29 2004 - 14:58:01 CDT)
- Andrew Watts (Fri Apr 23 2004 - 15:26:37 CDT)
- Yang Yang (Fri Apr 16 2004 - 21:59:41 CDT)
- Yang Yang (Thu Apr 15 2004 - 13:19:11 CDT)
- Ajith Gunaratne (Sun Apr 11 2004 - 23:36:05 CDT)
- Jerry Ebalunode (Fri Mar 05 2004 - 23:09:07 CST)
- B $B6Q (Mon Feb 16 2004 - 19:44:43 CST)
- Ioana Cozmuta (Mon Dec 08 2003 - 18:10:49 CST)
- Alexandre Vakhrouchev (Wed Nov 19 2003 - 02:11:14 CST)
- Dongsheng Zhang (Tue Nov 18 2003 - 17:24:20 CST)
- Alexandre Vakhrouchev (Thu Nov 06 2003 - 06:43:18 CST)
- J. Rui Rodrigues (Fri Oct 17 2003 - 11:46:41 CDT)
- Tsu-Fan Cheng (Wed Sep 17 2003 - 22:02:23 CDT)
- Gemma Kinsella (Tue Jun 24 2003 - 10:11:04 CDT)
- Gemma Kinsella (Tue Jun 24 2003 - 10:07:26 CDT)
- Dongsheng Zhang (Wed May 21 2003 - 23:13:52 CDT)
- silvya (Thu Apr 10 2003 - 17:55:11 CDT)
- Markus Laub (Mon Mar 31 2003 - 06:31:44 CST)
- chandran karunakaran (Thu Mar 20 2003 - 13:56:44 CST)
- chandran karunakaran (Thu Mar 20 2003 - 13:55:13 CST)
- César Filipe Barbosa Ribeiro (Sun Dec 02 2001 - 13:50:44 CST)
- prachi singh (Mon Jun 05 2000 - 08:26:51 CDT)
(UNCLASSIFIED)
- John Stone (Fri Jan 04 2008 - 13:29:49 CST)
- Paul, Kristian (Cont, ARL/WMRD) (Fri Jan 04 2008 - 13:22:28 CST)
- Balu, Radhakrishnan (Cont, ARL/WMRD) (Tue Nov 27 2007 - 09:18:18 CST)
(xterm: Command not found) error
- John Stone (Wed Apr 12 2006 - 14:29:07 CDT)
- Jorge Hernandez Fernandez (Wed Apr 12 2006 - 14:14:58 CDT)
.cshrc error prevents VMD working on OSX10.3.3??? or something else???
- John Stone (Tue Mar 23 2004 - 10:54:22 CST)
- Dr. Daniel James White PhD (Tue Mar 23 2004 - 03:36:59 CST)
.grd and .srf
- vivek sharma (Mon Sep 19 2005 - 00:09:52 CDT)
- John Stone (Fri Sep 16 2005 - 16:37:21 CDT)
- John Stone (Fri Sep 16 2005 - 16:08:13 CDT)
- John Stone (Fri Sep 16 2005 - 10:25:47 CDT)
- vivek sharma (Fri Sep 16 2005 - 01:52:45 CDT)
.pdb file from XMD
- John Stone (Thu Nov 02 2006 - 10:45:49 CST)
- Alexandr Isayev (Thu Nov 02 2006 - 09:18:20 CST)
- 04215287d_at_polyu.edu.hk (Thu Nov 02 2006 - 08:39:44 CST)
.psf and .params files for IMD
- John Stone (Thu Dec 11 2003 - 10:15:30 CST)
- Harit Jani (Wed Dec 10 2003 - 19:08:02 CST)
.psf for porphyrin
- javier.vallejos_at_correo.usach.cl (Sat Oct 21 2006 - 18:11:19 CDT)
.vmdrc
- John Stone (Thu Jun 22 2006 - 15:17:31 CDT)
- Brian Kidd (Wed Jun 21 2006 - 18:26:48 CDT)
.XYZ File format
- Ramesh K. Sistla (Mon Jun 23 2003 - 06:10:30 CDT)
- Shantipriya Tenneti (Fri Jun 20 2003 - 18:04:42 CDT)
.XYZ File format (DL_POLY conversion)
- John Stone (Mon Jun 23 2003 - 09:37:34 CDT)
.xyz file, namelist index too large error
- John Stone (Thu Jun 07 2007 - 11:11:43 CDT)
- Axel Kohlmeyer (Wed Jun 06 2007 - 19:00:56 CDT)
- Erkan Tuzel (Wed Jun 06 2007 - 19:39:48 CDT)
.xyz to .dcd using catdcd
- John Stone (Fri Apr 20 2007 - 15:36:36 CDT)
- John Stone (Tue Apr 17 2007 - 12:48:12 CDT)
- Ekta Khurana (Mon Apr 16 2007 - 21:31:42 CDT)
- Peter Freddolino (Mon Apr 16 2007 - 21:31:32 CDT)
- Axel Kohlmeyer (Mon Apr 16 2007 - 19:51:35 CDT)
- Ekta Khurana (Mon Apr 16 2007 - 14:34:47 CDT)
- Peter Freddolino (Fri Apr 13 2007 - 21:26:57 CDT)
- Ekta Khurana (Fri Apr 13 2007 - 16:08:51 CDT)
0ne of a kind repl1cas
- Sandy Anderson (Thu Apr 03 2008 - 08:19:31 CDT)
1.3b2
- robert austin (Sun Mar 21 1999 - 16:31:34 CST)
- John Stone (Wed Mar 03 1999 - 12:23:29 CST)
- Keith Refson (Wed Mar 03 1999 - 11:51:13 CST)
1.6.1 hotkey problem
- Justin Gullingsrud (Wed May 02 2001 - 15:18:40 CDT)
- Ben Cornett (Wed May 02 2001 - 13:05:47 CDT)
1.8.2beta
- Mike McCallum (Tue Nov 25 2003 - 16:38:38 CST)
1.8.3
- John Stone (Fri Jul 30 2004 - 14:33:35 CDT)
- Daniel B. Faken (Fri Jul 30 2004 - 09:36:52 CDT)
1.8.5: VASP plugin not correct
- Axel Kohlmeyer (Tue Sep 26 2006 - 09:33:45 CDT)
- John Stone (Mon Sep 25 2006 - 21:23:42 CDT)
- Rob (Mon Sep 25 2006 - 17:57:22 CDT)
- Rob (Mon Sep 25 2006 - 17:55:02 CDT)
- Axel Kohlmeyer (Mon Sep 25 2006 - 11:44:23 CDT)
- Rob (Mon Sep 25 2006 - 11:17:10 CDT)
- John Stone (Mon Sep 25 2006 - 09:18:08 CDT)
- Axel Kohlmeyer (Mon Sep 25 2006 - 08:45:26 CDT)
- John Stone (Mon Sep 25 2006 - 07:48:33 CDT)
- Rob (Mon Sep 25 2006 - 07:33:43 CDT)
- John Stone (Mon Sep 25 2006 - 06:23:48 CDT)
- Rob (Mon Sep 25 2006 - 05:45:15 CDT)
- John Stone (Fri Sep 22 2006 - 12:36:44 CDT)
- Rob (Thu Sep 21 2006 - 22:15:06 CDT)
1.8.6 install for Windows OpenGL (Microsoft Windows 2000/XP/Vista (32-bit) using OpenGL)
- John Stone (Sun Apr 08 2007 - 11:26:33 CDT)
- Charles Cleveland (Sun Apr 08 2007 - 08:05:00 CDT)
100% of CPU usage
- John Stone (Wed Sep 07 2005 - 22:22:16 CDT)
- John Stone (Thu Aug 11 2005 - 09:46:14 CDT)
- griadi_at_utalca.cl (Wed Aug 10 2005 - 18:46:46 CDT)
15% off on two watches
- Lora Burgos (Mon Apr 14 2008 - 00:35:59 CDT)
1999 VMD User Survey Report
- John Stone (Mon May 24 1999 - 15:21:56 CDT)
2 more quick questions
- John Stone (Wed Jan 22 2003 - 18:18:30 CST)
- phubbard_at_post.its.mcw.edu (Wed Jan 22 2003 - 17:53:54 CST)
2 questions
- Justin Gullingsrud (Wed Jan 09 2002 - 11:23:07 CST)
- Sanjeev B.S. (Mon Jan 07 2002 - 02:43:18 CST)
20 colors for 20 amino acids!
- John Stone (Wed Jan 22 2003 - 10:13:30 CST)
- Dr Nick (Fri Jan 17 2003 - 11:23:28 CST)
2000 VMD Survey Report is up
- John Stone (Mon Nov 13 2000 - 18:08:44 CST)
2006 VMD user survey in progress
- John Stone (Wed Aug 02 2006 - 18:05:13 CDT)
2D projection
- Paul Grayson (Fri Jul 26 2002 - 10:11:58 CDT)
- John Stone (Fri Jul 26 2002 - 09:40:38 CDT)
- Stéphane Teletchéa (Thu Jul 25 2002 - 08:12:15 CDT)
3 simple questions from a newbie
- Justin Gullingsrud (Mon Jul 23 2001 - 12:34:16 CDT)
- Alexey Kozlenkov (Mon Jul 23 2001 - 07:01:43 CDT)
3-d visualization
- John Stone (Wed May 28 2003 - 12:29:25 CDT)
3D grid data to 2D contour?
- John Stone (Tue Feb 20 2007 - 02:04:57 CST)
- Ivan Degtyarenko (Thu Feb 15 2007 - 15:04:05 CST)
3D printing
- John Stone (Fri Dec 06 2002 - 16:17:24 CST)
3D visualization
- John Stone (Thu Dec 20 2001 - 14:16:33 CST)
- John Stone (Thu Dec 20 2001 - 14:09:12 CST)
- Stephen Koch (Thu Dec 20 2001 - 13:39:17 CST)
3D/stereo hardware recommendations wanted!!!
- John Stone (Fri Jan 14 2005 - 11:29:36 CST)
- Mads Nørregaard-Madsen (Fri Jan 14 2005 - 05:09:54 CST)
- Bogdan Costescu (Fri Jan 14 2005 - 04:51:45 CST)
- Thomas Hedegaard Pedersen (Fri Jan 14 2005 - 02:41:13 CST)
3Dconnexion SpaceTraveler works
- Eugen Leitl (Fri Jul 14 2006 - 03:43:21 CDT)
- John Stone (Thu Jul 06 2006 - 13:21:22 CDT)
- Eugen Leitl (Wed Jul 05 2006 - 08:21:00 CDT)
- Eugen Leitl (Wed Jul 05 2006 - 07:54:46 CDT)
64 bit NAMD on AIX and CatDCD
- John Stone (Mon Jan 23 2006 - 13:21:14 CST)
- Joshua D. Moore (Sat Jan 21 2006 - 13:22:11 CST)
6DOF controllers
- John Stone (Sat Jan 08 2000 - 21:23:23 CST)
- Eugene Leitl (Sat Jan 08 2000 - 20:42:01 CST)
99 Toyotas as low as 2% over invoice
- accutone_at_atlsky.com (Sat Sep 05 1998 - 19:10:53 CDT)
[bigdcd.tcl] How to stream output to file
- Justin Gullingsrud (Thu Mar 03 2005 - 10:33:45 CST)
- Sascha Tayefeh (Thu Mar 03 2005 - 04:20:38 CST)
[carlos.simmerling@gmail.com: ACS awards]
- John Stone (Mon Mar 03 2008 - 20:11:56 CST)
[Contribute] transparent MacOS X icon for VMD
- John Stone (Mon Aug 19 2002 - 11:47:21 CDT)
- MengJuei Hsieh (Fri Aug 16 2002 - 20:54:41 CDT)
- John Stone (Thu Aug 15 2002 - 17:08:44 CDT)
- MengJuei Hsieh (Wed Aug 14 2002 - 19:15:49 CDT)
[Fwd: pdb from trajectory] some clarification
- Peter Freddolino (Wed Jan 24 2007 - 07:55:05 CST)
- _at_huji.ac.il (Wed Jan 24 2007 - 04:37:40 CST)
- John Stone (Tue Jan 23 2007 - 13:45:07 CST)
- Peter Freddolino (Tue Jan 23 2007 - 10:10:59 CST)
- _at_huji.ac.il (Tue Jan 23 2007 - 09:41:49 CST)
[jrodgers78@gmail.com: outputing secondary structure from timeline]
- Barry Isralewitz (Mon Jan 23 2006 - 15:16:42 CST)
[lammps-users] MDAnalysis (slightly OT)
- Axel Kohlmeyer (Tue May 27 2008 - 12:54:41 CDT)
[linux-elitists] ATI Radeon support (fwd from deejoe@raccoon.com)
- Eugen Leitl (Tue Dec 14 2004 - 03:33:02 CST)
[MMTK] Visualization to an image file (fwd from hinsen@cnrs-orleans.fr)
- Eugen Leitl (Mon Jul 12 2004 - 08:36:58 CDT)
[OT] pdb files with lots of residues
- Justin Gullingsrud (Thu Jan 30 2003 - 09:45:07 CST)
- Jim Phillips (Thu Jan 30 2003 - 09:21:37 CST)
- gianluca santarossa (Thu Jan 30 2003 - 09:10:23 CST)
[PyMOL] 3D on linux (fwd)
- Eugen Leitl (Thu Jan 30 2003 - 09:40:15 CST)
[PyMOL] enable direct rendering DRI on fedora core 2
- Jack Howarth (Fri Jun 11 2004 - 07:22:35 CDT)
[PyMOL] NVidia [7174] Drivers & Nuccyl
- Sabuj Pattanayek (Fri Apr 01 2005 - 14:24:34 CST)
[PyMOL] nVidia Driver 7664 for Linux
- John Stone (Thu Jun 02 2005 - 15:12:06 CDT)
- sabuj pattanayek (Thu Jun 02 2005 - 13:57:54 CDT)
[PyMOL] pymol crashes with new [7167] nvidia driver
- John Stone (Tue Mar 29 2005 - 12:52:55 CST)
- Sabuj Pattanayek (Tue Mar 29 2005 - 11:55:03 CST)
- John Stone (Tue Mar 29 2005 - 11:31:14 CST)
- Sabuj Pattanayek (Tue Mar 29 2005 - 11:11:54 CST)
- John Stone (Mon Mar 28 2005 - 09:10:09 CST)
- Sabuj Pattanayek (Sat Mar 26 2005 - 16:45:31 CST)
- Sabuj Pattanayek (Sat Mar 26 2005 - 16:42:42 CST)
[selection problem] When I choose all not 'solvent', one residue is gone?v1.8.3
- Stanley Lan (Fri Oct 28 2005 - 11:47:06 CDT)
[Tech] Colors in VMD
- Andrew Dalke (Fri Jan 24 1997 - 15:24:38 CST)
- Chris Upton (Fri Jan 24 1997 - 11:55:13 CST)
- Andrew Dalke (Fri Jan 24 1997 - 11:44:45 CST)
[Tech] Customizing VMD: hot keys and popup menus
- Andrew Dalke (Fri Jan 31 1997 - 12:10:02 CST)
[VMD TECH] Tracing VMD Variables (Part II)
- Alexander Balaeff (Thu May 01 1997 - 16:29:52 CDT)
- Jeff Ulrich (Wed Apr 30 1997 - 17:42:04 CDT)
[vmd-l] Graduate assistanship in Bioinformatics at NCSA
- Gloria Rendon (Wed Mar 28 2007 - 17:45:25 CDT)
[vmd] K3b bug?
- christopher (Sat Jan 27 2007 - 09:15:58 CST)
- Peter Freddolino (Sat Jan 27 2007 - 08:26:32 CST)
- Peter Freddolino (Sat Jan 27 2007 - 07:59:55 CST)
- christopher (Sat Jan 27 2007 - 07:12:57 CST)
[vmd] max number of molecules on mac
- John Stone (Tue Jan 17 2006 - 10:06:26 CST)
- James Rustad (Tue Jan 17 2006 - 09:55:22 CST)
- Axel Kohlmeyer (Tue Jan 17 2006 - 06:32:23 CST)
- James Rustad (Mon Jan 16 2006 - 22:27:30 CST)
[vmd_chcwaaa@yahoo.com.cn: about measure dihedral angle]
- Jan Saam (Fri May 16 2008 - 18:15:51 CDT)
[VMDTECH] Drawing Methods, Part I
- Andrew Dalke (Fri Mar 07 1997 - 16:22:57 CST)
[VMDTECH] Drawing Methods, Part II
- Andrew Dalke (Fri Mar 14 1997 - 16:40:47 CST)
[VMDTECH] Hingefind
- Willy Wriggers (Wed Jun 11 1997 - 16:57:22 CDT)
- Sergei Izrailev (Wed Jun 11 1997 - 16:45:17 CDT)
[VMDTECH] Making Movies
- Andrew Dalke (Fri Feb 14 1997 - 12:56:27 CST)
[VMDTECH] Morphing
- Andrew Dalke (Fri Mar 28 1997 - 12:14:17 CST)
[VMDTECH] RMSD and best-fit alignments
- Andrew Dalke (Fri Feb 07 1997 - 14:37:24 CST)
[VMDTECH] Schedule Change
- Andrew Dalke (Fri Apr 18 1997 - 18:07:35 CDT)
[VMDTECH] Secondary Structure
- Andrew Dalke (Fri Feb 28 1997 - 16:38:21 CST)
[VMDTECH] Small things
- Andrew Dalke (Fri Feb 21 1997 - 13:02:34 CST)
[VMDTECH] Smoothing Animations
- Andrew Dalke (Sun Apr 13 1997 - 01:28:43 CDT)
[VMDTECH] Tracing Atom Picks
- Andrew Dalke (Fri Apr 04 1997 - 18:27:57 CST)
[VMDTECH] VMD 1.2b1 is now available
- Andrew Dalke (Tue Mar 25 1997 - 03:03:32 CST)
- Andrew Dalke (Tue Mar 25 1997 - 02:09:57 CST)
[VMDTECH] Working with colors
- Sergei Izrailev (Tue Jul 01 1997 - 20:21:43 CDT)
a air box
- Peter Freddolino (Thu May 10 2007 - 10:25:46 CDT)
- Axel Kohlmeyer (Thu May 10 2007 - 09:22:45 CDT)
- SMAHANE CHALABI (Thu May 10 2007 - 08:38:15 CDT)
a common list problem
- John Stone (Fri May 02 2008 - 10:39:04 CDT)
- Thomas C. Bishop (Fri May 02 2008 - 10:28:30 CDT)
a display problem
- John Stone (Thu Mar 09 2006 - 10:33:27 CST)
- lily jin (Thu Mar 09 2006 - 10:22:57 CST)
A error of " transforming dcd into pdb "
- Axel Kohlmeyer (Tue Aug 29 2006 - 11:55:49 CDT)
- John Stone (Tue Aug 29 2006 - 11:51:00 CDT)
- wang (Tue Aug 29 2006 - 03:02:10 CDT)
- Leonardo Trabuco (Tue Aug 29 2006 - 10:48:36 CDT)
- Eduard Schreiner (Tue Aug 29 2006 - 04:46:24 CDT)
- dimka (Tue Aug 29 2006 - 02:41:47 CDT)
- dimka (Tue Aug 29 2006 - 02:37:14 CDT)
- Leonardo Trabuco (Tue Aug 29 2006 - 02:02:52 CDT)
- wang (Tue Aug 29 2006 - 01:27:52 CDT)
a few questions about VMD
- John Stone (Fri Sep 22 2000 - 16:34:17 CDT)
- Eric Hu (Fri Sep 22 2000 - 16:31:06 CDT)
- John Stone (Wed Sep 20 2000 - 19:55:26 CDT)
- Eric Hu (Wed Sep 20 2000 - 17:49:07 CDT)
a few questions on uninstall, labels, rasmol,seq window
- John Stone (Fri Apr 11 2003 - 14:49:49 CDT)
- Y U Sasidhar (Fri Apr 11 2003 - 00:07:51 CDT)
a gas box
- Axel Kohlmeyer (Tue May 15 2007 - 08:22:16 CDT)
- SMAHANE CHALABI (Tue May 15 2007 - 06:10:05 CDT)
a name quesiton
- lily jin (Fri Apr 07 2006 - 11:19:41 CDT)
a problem using python in vmd
- Kristina Woods (Thu Aug 25 2005 - 10:56:15 CDT)
a problem with installation (to generate the Makefile )
- Axel Kohlmeyer (Tue Aug 07 2007 - 08:15:36 CDT)
- John Stone (Mon Aug 06 2007 - 23:56:38 CDT)
- Panichakorn Jaiyong (Mon Aug 06 2007 - 23:52:26 CDT)
a question
- Vlad Cojocaru (Fri Jan 30 2004 - 07:29:38 CST)
- John Stone (Tue Feb 06 2001 - 09:55:21 CST)
- cojocaru vlad (Mon Feb 05 2001 - 10:24:40 CST)
a question about "measure fit"
- John Stone (Fri Jun 23 2006 - 11:13:26 CDT)
- dwang_at_cs.kent.edu (Thu Jun 22 2006 - 20:36:59 CDT)
a question about dcd files
- Ana Celia Vila Verde (Thu Feb 02 2006 - 08:32:35 CST)
- John Stone (Wed Feb 01 2006 - 14:29:15 CST)
- Ana Celia Vila Verde (Wed Feb 01 2006 - 13:53:39 CST)
a question about get the coordinates in vector form
- Axel Kohlmeyer (Fri Apr 15 2005 - 16:19:25 CDT)
- Eugen Leitl (Fri Apr 15 2005 - 15:45:24 CDT)
- M SH (Fri Apr 15 2005 - 13:31:45 CDT)
a question about paratool
- Jan Saam (Thu Feb 22 2007 - 18:43:57 CST)
- Javaria Ahmad (Tue Feb 20 2007 - 06:35:52 CST)
a question about ribbon representation
- John Stone (Wed Apr 12 2006 - 16:04:05 CDT)
- yzhou_at_chem.umn.edu (Wed Apr 12 2006 - 15:07:27 CDT)
a question in using PSFGEN
- Jim Phillips (Tue Apr 27 2004 - 11:04:31 CDT)
- Yang Yang (Mon Apr 26 2004 - 21:55:45 CDT)
a suggestion and query on command usage
- John Stone (Tue Jul 05 2005 - 10:06:10 CDT)
- Eduard Schreiner (Sat Jul 02 2005 - 10:01:53 CDT)
- cbala_at_igib.res.in (Fri Jul 01 2005 - 08:08:57 CDT)
A very minor question on the MacOS X native bundle version
- MengJuei Hsieh (Wed Nov 27 2002 - 01:28:08 CST)
- John Stone (Sun Nov 24 2002 - 20:43:06 CST)
- MengJuei Hsieh (Fri Nov 22 2002 - 19:53:57 CST)
A vmd bug 1.8a28
- Stéphane Teletchéa (Thu Oct 31 2002 - 08:01:34 CST)
a water box containing only the absorbent heads of
- Axel Kohlmeyer (Thu May 03 2007 - 07:44:05 CDT)
- SMAHANE CHALABI (Thu May 03 2007 - 03:11:45 CDT)
about adding ions to an ion channel pore
- Axel Kohlmeyer (Fri Apr 01 2005 - 01:46:50 CST)
- Xiaoqing Wang (Thu Mar 31 2005 - 20:59:36 CST)
about average structure
- Jan Saam (Sun Mar 21 2004 - 05:16:00 CST)
about CHARMM electrostaic potential
- ivana adamovic (Mon Feb 05 2007 - 11:56:35 CST)
- John Stone (Mon Feb 05 2007 - 11:03:04 CST)
- ivana adamovic (Mon Feb 05 2007 - 09:46:47 CST)
About CHARMM electrostaic potential map
- ivana adamovic (Wed Jan 31 2007 - 14:30:11 CST)
- John Stone (Wed Jan 31 2007 - 13:37:30 CST)
- ivana adamovic (Wed Jan 31 2007 - 09:26:19 CST)
about CHARMM electrostatic potential
- ivana adamovic (Mon Feb 05 2007 - 14:54:15 CST)
- John Stone (Mon Feb 05 2007 - 14:47:51 CST)
- ivana adamovic (Mon Feb 05 2007 - 14:44:51 CST)
About Cluster Plug-in
- John Stone (Tue Feb 05 2008 - 09:45:23 CST)
- OZGE ENGIN (Tue Feb 05 2008 - 09:05:00 CST)
about command readpdb?
- John Stone (Mon Nov 24 2003 - 14:14:21 CST)
- Li Qiang (Mon Nov 24 2003 - 09:12:11 CST)
About drawing bonds.
- John Stone (Wed Apr 24 2002 - 10:11:10 CDT)
- Luca UvA (Wed Apr 24 2002 - 08:07:32 CDT)
about dynamical change color of atoms
- John Stone (Thu Apr 01 2004 - 12:57:33 CST)
- Emmanouil_Bambakopoulos (Thu Apr 01 2004 - 09:35:40 CST)
about frame
- John Stone (Tue Jan 20 2004 - 10:50:37 CST)
- moggces_at_rx.mc.ntu.edu.tw (Mon Jan 19 2004 - 20:17:40 CST)
about gamess plugin
- John Stone (Thu Sep 29 2005 - 10:59:51 CDT)
- mashaojienuaa (Thu Sep 29 2005 - 01:40:50 CDT)
- John Stone (Mon Jun 06 2005 - 12:49:20 CDT)
- mashaojie163 (Thu Jun 02 2005 - 20:50:59 CDT)
about graphics accelaration
- John Stone (Wed May 15 2002 - 11:21:56 CDT)
- Stéphane Teletchéa (Wed May 15 2002 - 10:47:04 CDT)
- Stéphane Teletchéa (Mon Apr 15 2002 - 03:22:03 CDT)
- John Stone (Fri Apr 12 2002 - 12:27:41 CDT)
- Emanuel Vamvakopoulos (Fri Apr 12 2002 - 11:36:49 CDT)
about maximum number of atoms
- Brian Bennion (Wed Aug 02 2006 - 17:55:28 CDT)
- John Stone (Wed Aug 02 2006 - 17:25:32 CDT)
- L. Michel Espinoza-Fonseca (Wed Aug 02 2006 - 17:04:07 CDT)
- John Stone (Wed Aug 02 2006 - 16:53:53 CDT)
- L. Michel Espinoza-Fonseca (Wed Aug 02 2006 - 16:41:16 CDT)
- John Stone (Wed Aug 02 2006 - 15:39:50 CDT)
- L. Michel Espinoza-Fonseca (Wed Aug 02 2006 - 15:25:41 CDT)
about measure dihedral angle
- cong chen (Thu May 08 2008 - 20:53:08 CDT)
about new vmd on windows
- mashaojie163 (Tue Oct 11 2005 - 04:11:24 CDT)
About occupancy volume maps
- Axel Kohlmeyer (Thu Jun 19 2008 - 05:20:24 CDT)
- Ignacio Fernández Galván (Thu Jun 19 2008 - 02:43:11 CDT)
- John Stone (Thu Jun 19 2008 - 00:38:25 CDT)
- Ignacio Fernández Galván (Fri Jun 13 2008 - 05:40:17 CDT)
About openning a file to write in callback function
- Axel Kohlmeyer (Mon Apr 23 2007 - 14:00:35 CDT)
- preeda (Mon Apr 23 2007 - 12:07:59 CDT)
about paratool
- saam (Tue Mar 11 2008 - 11:56:45 CDT)
- laura (Wed Mar 05 2008 - 02:33:41 CST)
- Francesco Pietra (Wed May 23 2007 - 09:38:40 CDT)
about resid
- moggces (Thu Nov 20 2003 - 11:16:17 CST)
- Justin Gullingsrud (Thu Nov 20 2003 - 12:16:35 CST)
about shape order parameter
- Emmanuel Vamvakopoulos (Sat May 24 2003 - 07:12:07 CDT)
about superimposing by VMD
- John Stone (Fri May 09 2003 - 10:46:46 CDT)
- Hu, Xiaohua (Wed May 07 2003 - 13:36:47 CDT)
About Tcl command
- zhjjvmd (Sun Apr 06 2008 - 01:17:54 CDT)
- Axel Kohlmeyer (Sun Apr 06 2008 - 00:58:40 CDT)
- zhjjvmd (Sat Apr 05 2008 - 20:58:15 CDT)
about tcl program and run tcl script in namd
- Justin Gullingsrud (Sat Apr 16 2005 - 16:42:52 CDT)
- Gino (Sat Apr 16 2005 - 01:31:23 CDT)
about the psfgen of vmd
- John Stone (Tue Mar 21 2006 - 10:37:14 CST)
- Shulin Zhuang (Tue Mar 21 2006 - 08:46:28 CST)
About using trace
- John Stone (Fri Apr 20 2007 - 12:02:14 CDT)
- preeda (Fri Apr 20 2007 - 10:04:09 CDT)
about viewing charge density
- John Stone (Sun Apr 02 2006 - 14:37:46 CDT)
- jun (Sun Apr 02 2006 - 14:00:58 CDT)
about vmd
- John Stone (Wed Dec 29 2004 - 18:07:49 CST)
- yoongho (Wed Dec 29 2004 - 06:58:51 CST)
About VMD compile in win32
- John Stone (Wed Mar 08 2006 - 11:18:25 CST)
- mustapha.hamdi_at_ensi-bourges.fr (Wed Mar 08 2006 - 12:04:29 CST)
about writepdb
- cong chen (Mon May 05 2008 - 00:08:53 CDT)
- JC Gumbart (Mon May 05 2008 - 00:18:00 CDT)
absolute C.O.M motion calculation script: help
- John Stone (Fri May 18 2007 - 16:54:42 CDT)
- hl332_at_drexel.edu (Wed May 16 2007 - 11:06:45 CDT)
Access to bond information inside a VMD plugin...
- Axel Kohlmeyer (Mon Oct 09 2006 - 12:14:55 CDT)
- Miller, Patrick (Mon Oct 09 2006 - 11:19:54 CDT)
Access to Python libraries from Mandrake8.1
- Justin Gullingsrud (Sun Mar 03 2002 - 03:16:34 CST)
- John Stone (Thu Feb 28 2002 - 09:59:42 CST)
- jen ramus (Wed Feb 27 2002 - 19:08:08 CST)
Accessing TCL through Python interface
- Daniel B. Faken (Sat May 14 2005 - 15:09:35 CDT)
accessing VMD help
- Robert Campbell (Fri Oct 31 2003 - 09:51:53 CST)
- Brian Bennion (Fri Oct 31 2003 - 10:14:42 CST)
- John Robert Kitchin (Fri Oct 31 2003 - 09:22:10 CST)
- Fernandez-Alonso, F (Felix) (Fri Oct 31 2003 - 07:42:15 CST)
ACE and NH2
- ÁèáíÜóéïò Óôáõñáêïýäçò (Tue Jul 03 2007 - 16:37:43 CDT)
- Peter Freddolino (Tue Jul 03 2007 - 16:46:26 CDT)
ACTC Triangle Consolidation
- John Stone (Fri Dec 12 2003 - 14:32:00 CST)
- Tyler Luchko (Fri Dec 12 2003 - 12:24:06 CST)
- John Stone (Fri Dec 12 2003 - 10:06:50 CST)
- Tyler Luchko (Thu Dec 11 2003 - 16:37:33 CST)
Activation energy
- Alexis Salas (Thu Aug 19 2004 - 13:33:36 CDT)
AD:Family Reunion T Shirts & More
- hifiber7_at_compuserve.com (Sat Feb 19 2000 - 11:12:59 CST)
- hifiber7_at_compuserve.com (Sat Feb 12 2000 - 02:20:20 CST)
add a new color
- John Stone (Mon Feb 23 2004 - 11:07:41 CST)
- Vlad Cojocaru (Sun Feb 22 2004 - 12:51:11 CST)
add a new file to vmd1.8.3 on linux(FC4)
- John Stone (Tue Nov 01 2005 - 15:09:30 CST)
- baogen duan (Sun Oct 30 2005 - 21:50:22 CST)
add a new file type to VMD on linux(FC4)
- John Stone (Fri Oct 28 2005 - 10:24:32 CDT)
- John Stone (Fri Oct 28 2005 - 09:55:51 CDT)
- baogen duan (Thu Oct 27 2005 - 22:32:59 CDT)
Add H-atoms to Pdb file for NMR
- John Stone (Tue Apr 20 2004 - 15:06:59 CDT)
- chandran karunakaran (Tue Apr 20 2004 - 11:22:32 CDT)
add Mg2+
- Peter Freddolino (Fri Dec 21 2007 - 11:09:10 CST)
- Lixia Jin Day (Fri Dec 21 2007 - 10:52:42 CST)
- John Stone (Wed Dec 19 2007 - 15:37:16 CST)
- Lixia Jin Day (Wed Dec 19 2007 - 15:27:04 CST)
- John Stone (Wed Dec 19 2007 - 14:09:30 CST)
- Lixia Jin Day (Thu Dec 13 2007 - 11:19:06 CST)
Add transparent plane to molecular
- Rob (Tue Jan 30 2007 - 09:05:36 CST)
Add transparent plane to molecular structure
- Axel Kohlmeyer (Tue Jan 30 2007 - 11:04:27 CST)
- Rob (Tue Jan 30 2007 - 03:12:21 CST)
- Axel Kohlmeyer (Mon Jan 29 2007 - 21:31:50 CST)
- Rob (Mon Jan 29 2007 - 20:57:38 CST)
add water on the top of protein border
- Xiaoqing Wang (Wed Apr 06 2005 - 09:20:24 CDT)
Adding a logo to a screenshot
- John Stone (Fri May 20 2005 - 15:28:47 CDT)
- Palmer, Teresa (Fri May 20 2005 - 15:12:55 CDT)
Adding Atoms in Colors Menu
- Justin Gullingsrud (Fri Apr 02 2004 - 10:18:01 CST)
- Alexandre Suman de Araujo (Fri Apr 02 2004 - 03:33:52 CST)
adding bonds between segments
- Justin Gullingsrud (Thu Feb 19 2004 - 12:28:52 CST)
- Streiff, John H. (Tue Feb 17 2004 - 14:20:24 CST)
Adding bonds in a script
- Ignacio Fernández Galván (Thu Sep 28 2006 - 04:08:08 CDT)
Adding color scale bar on the screen
- John Stone (Thu Apr 14 2005 - 20:36:53 CDT)
- Jay Lee (Thu Apr 14 2005 - 18:50:22 CDT)
adding hydrogen atoms
- Peter Freddolino (Tue May 02 2006 - 13:00:10 CDT)
- Naser, Md Abu (Tue May 02 2006 - 09:20:34 CDT)
Adding labels, etc.
- Justin Gullingsrud (Sun Jul 14 2002 - 12:25:20 CDT)
- Sanjeev B.S. (Sun Jul 14 2002 - 05:40:26 CDT)
adding new atoms to a molecule from a script
- Eduard Schreiner (Thu Oct 05 2006 - 08:20:54 CDT)
- Enzo Vitale (Thu Oct 05 2006 - 05:20:55 CDT)
Adding New Color Definitions to Color Form
- John Stone (Tue Jan 24 2006 - 10:11:21 CST)
- Adrian Koh (Tue Jan 24 2006 - 03:08:48 CST)
adding residue at start or end
- Peter Freddolino (Tue Jun 19 2007 - 12:41:10 CDT)
- Zhenwei Lu (Tue Jun 19 2007 - 10:58:30 CDT)
Adding Salt to a system
- Ioana Cozmuta (Wed Jun 22 2005 - 20:59:47 CDT)
- Thomas C. Bishop (Thu May 19 2005 - 10:09:26 CDT)
adding selections
- Axel Kohlmeyer (Fri Oct 20 2006 - 14:03:56 CDT)
- Myunggi Yi (Fri Oct 20 2006 - 13:04:21 CDT)
adding urea to a protein-water system
- L. Michel Espinoza-Fonseca (Mon Jul 30 2007 - 05:05:46 CDT)
adding waters only in top of lipid
- Justin Gullingsrud (Thu Feb 19 2004 - 12:30:36 CST)
- Satyavani Vemparala (Tue Feb 17 2004 - 12:15:55 CST)
addition on CHARMM electrostatic pot.
- ivana adamovic (Fri Feb 02 2007 - 09:11:44 CST)
- John Stone (Thu Feb 01 2007 - 17:27:36 CST)
- ivana adamovic (Thu Feb 01 2007 - 13:42:08 CST)
Adjacent surface?
- John Stone (Mon Aug 22 2005 - 11:05:33 CDT)
- Brian Bennion (Thu Aug 18 2005 - 14:24:07 CDT)
- paul d jones (Thu Aug 18 2005 - 07:54:31 CDT)
Adjusting perspective
- John Stone (Mon May 28 2007 - 15:57:51 CDT)
- Cesar Luis Avila (Thu May 24 2007 - 11:33:40 CDT)
Adjusting R/S configuration
- Peter Freddolino (Sat Aug 11 2007 - 08:43:09 CDT)
- Francesco Pietra (Sat Aug 11 2007 - 02:21:47 CDT)
advanced python console
- Axel Kohlmeyer (Tue Sep 04 2007 - 09:18:34 CDT)
- Gianluca Santarossa (Tue Sep 04 2007 - 09:17:45 CDT)
advice for a PCI video card on redhat
- John Stone (Wed May 28 2003 - 15:49:07 CDT)
again about average strutcure
- li (Tue Mar 18 2008 - 17:31:26 CDT)
Aggregation analysis
- John Stone (Wed Aug 29 2007 - 00:21:48 CDT)
- zhenlong li (Thu Aug 23 2007 - 10:07:49 CDT)
Align a PORTION of several structures
- Shirley Li (Fri Oct 15 2004 - 09:33:00 CDT)
- Justin Gullingsrud (Thu Oct 14 2004 - 09:54:45 CDT)
- Shirley Li (Wed Oct 13 2004 - 18:05:01 CDT)
align and superimpose crd structures.
- Margaret Shun Cheung (Wed Jun 21 2006 - 17:16:41 CDT)
- John Stone (Wed Jun 21 2006 - 17:03:38 CDT)
- Margaret Shun Cheung (Wed Jun 21 2006 - 17:02:10 CDT)
- Margaret Shun Cheung (Wed Jun 21 2006 - 13:47:56 CDT)
- John Stone (Wed Jun 21 2006 - 13:34:48 CDT)
- John Stone (Wed Jun 21 2006 - 13:32:33 CDT)
- Margaret Shun Cheung (Wed Jun 21 2006 - 09:12:37 CDT)
Align protein with different number of aminoacid
- Luis Gracia (Thu Feb 10 2005 - 22:35:16 CST)
- Eduard Schreiner (Fri Feb 11 2005 - 04:42:24 CST)
- matteo.pennestri_at_virgilio.it (Thu Feb 10 2005 - 16:42:50 CST)
align two molecules with index
- Zhenyu Lu (Thu Apr 28 2005 - 17:42:23 CDT)
aligning molecules with different number of atoms
- Leandro Martínez (Mon Feb 12 2007 - 12:39:29 CST)
- Leonardo Trabuco (Mon Feb 12 2007 - 12:05:28 CST)
- John Stone (Mon Feb 12 2007 - 12:01:58 CST)
- JC Gumbart (Mon Feb 12 2007 - 11:58:12 CST)
- namd vmd (Mon Feb 12 2007 - 11:53:49 CST)
aligning one molecule
- Himanshu Khandelia (Wed Feb 14 2007 - 17:30:18 CST)
- s.schweizer_at_dkfz-heidelberg.de (Wed Feb 14 2007 - 08:47:41 CST)
aligning protein based on one helix of protein
- John Stone (Wed Oct 31 2007 - 17:25:50 CDT)
- maria goranovic (Wed Oct 31 2007 - 13:14:12 CDT)
- maria goranovic (Wed Oct 31 2007 - 08:48:29 CDT)
Aligning structures
- Marcos Sotomayor (Fri Mar 10 2006 - 10:19:43 CST)
- Richard Wood (Thu Mar 09 2006 - 21:20:45 CST)
Alignment
- Giovanni Bellesia (Mon Nov 05 2007 - 12:10:58 CST)
- Zhaochuan Shen (Mon Nov 05 2007 - 11:41:52 CST)
- John Stone (Sun Nov 04 2007 - 13:53:06 CST)
- John Stone (Sat Nov 03 2007 - 23:30:57 CDT)
- Zhaochuan Shen (Thu Nov 01 2007 - 16:52:12 CDT)
alignment and rmsd fit
- John Stone (Fri Nov 08 2002 - 17:00:06 CST)
- Marcela Madrid (Fri Nov 08 2002 - 16:16:38 CST)
alignment problem. trying to align new lipid to bilayer, but lipid always has wrong direction?
- maria goranovic (Tue Apr 22 2008 - 07:02:42 CDT)
Alignment Python
- Per Jr. Greisen (Fri Aug 11 2006 - 05:19:15 CDT)
aligntool
- Barry Isralewitz (Thu Feb 13 2003 - 19:33:38 CST)
- Ioana Cozmuta (Thu Feb 13 2003 - 17:43:44 CST)
aligntool docs?...
- John Stone (Tue Jan 21 2003 - 15:36:56 CST)
- Joshua Speidel (Tue Jan 21 2003 - 15:03:36 CST)
All that I never took the time to ask about VMD ...
- John Stone (Fri Sep 06 2002 - 14:51:50 CDT)
- Marc Baaden (Sat Aug 31 2002 - 07:14:29 CDT)
all within selection
- Guanglei Cui (Thu Aug 11 2005 - 12:32:32 CDT)
- John Stone (Thu Aug 11 2005 - 11:56:29 CDT)
- Guanglei Cui (Thu Aug 11 2005 - 10:55:39 CDT)
Altering Definition of Molecular Coloring Method
- Axel Kohlmeyer (Tue Aug 01 2006 - 07:29:44 CDT)
- Adrian Koh (Mon Jul 31 2006 - 23:18:19 CDT)
- Peter Freddolino (Mon Jul 31 2006 - 09:05:16 CDT)
- Adrian Koh (Mon Jul 31 2006 - 05:08:56 CDT)
Altering water sphere and charmm type
- shgnwgn_at_eden.rutgers.edu (Mon Jul 25 2005 - 10:50:50 CDT)
alternative display mode of HBonds
- John Stone (Tue Apr 04 2006 - 14:46:46 CDT)
- Jean Richelle (Tue Apr 04 2006 - 09:51:18 CDT)
AMBER (old ?) nucleic acids names not recognised
- Teletchéa Stéphane (Fri Nov 21 2003 - 03:57:04 CST)
AMBER parmfiles
- John Stone (Mon Mar 17 2003 - 10:06:11 CST)
- Patrick Ladam (Mon Mar 17 2003 - 05:24:31 CST)
Amber patches for Auto PSF generator
- Peter Freddolino (Wed Jun 27 2007 - 12:04:09 CDT)
- Bob Johnson (Wed Jun 27 2007 - 11:55:44 CDT)
AMBER pbsa electrostatic potential map
- John Stone (Tue Apr 19 2005 - 21:16:05 CDT)
- Mengjuei Hsieh (Tue Apr 19 2005 - 18:05:49 CDT)
- John Stone (Tue Apr 19 2005 - 16:11:51 CDT)
- John Stone (Tue Apr 19 2005 - 10:22:21 CDT)
- Alexander Spaar (Tue Apr 19 2005 - 03:58:55 CDT)
- John Stone (Mon Apr 18 2005 - 10:13:39 CDT)
- Mengjuei Hsieh (Fri Apr 15 2005 - 20:09:09 CDT)
Amber periodic images
- John Stone (Thu Apr 29 2004 - 13:52:17 CDT)
- John Stone (Thu Apr 29 2004 - 13:49:52 CDT)
- Jim Shepherd (Thu Apr 29 2004 - 13:41:23 CDT)
- John Stone (Thu Apr 29 2004 - 10:56:26 CDT)
- Xiang, Tian-Xiang (Wed Apr 28 2004 - 10:25:09 CDT)
Amber prmtop/inpcrd files
- John Stone (Thu Aug 28 2003 - 15:46:52 CDT)
- John Stone (Thu Jul 31 2003 - 18:01:25 CDT)
- Teletchéa Stéphane (Thu Jul 31 2003 - 15:44:32 CDT)
- caldwell_at_heimdal.compchem.ucsf.edu (Thu Jul 31 2003 - 14:22:12 CDT)
- Teletchéa Stéphane (Thu Jul 31 2003 - 12:49:27 CDT)
- John Stone (Thu Jul 31 2003 - 11:44:38 CDT)
- Anshul Shah (Mon Jul 28 2003 - 17:17:29 CDT)
- Anshul Shah (Mon Jul 28 2003 - 15:45:05 CDT)
amber trajectory
- John Stone (Wed Jun 18 2003 - 09:55:39 CDT)
- Oscar Moran (Wed Jun 18 2003 - 03:17:58 CDT)
- John Stone (Tue Dec 17 2002 - 23:44:51 CST)
- Ioana Cozmuta (Tue Dec 17 2002 - 23:15:55 CST)
Amber trajectory loading
- John Stone (Wed Apr 21 2004 - 13:22:49 CDT)
- Xiang, Tian-Xiang (Wed Apr 21 2004 - 10:03:48 CDT)
AMBER6 format
- MengJuei Hsieh (Tue Nov 19 2002 - 16:02:55 CST)
- John Stone (Mon Nov 18 2002 - 00:20:19 CST)
- MengJuei Hsieh (Mon Nov 04 2002 - 17:22:44 CST)
- John Stone (Mon Nov 04 2002 - 14:56:12 CST)
- MengJuei Hsieh (Mon Nov 04 2002 - 14:39:52 CST)
AMBER9 netcdf trajectory loading
- John Stone (Wed Jul 26 2006 - 13:27:37 CDT)
- Fabian Boes (Fri Jul 21 2006 - 08:00:30 CDT)
AMD64 vmd installation problems
- John Stone (Wed May 31 2006 - 10:38:54 CDT)
- simon whitehead (Wed May 31 2006 - 04:41:36 CDT)
amd64/nvidiaFX1100/linux crash
- David A. Horita (Tue Oct 05 2004 - 17:19:49 CDT)
- John Stone (Tue Oct 05 2004 - 16:50:30 CDT)
- David A. Horita (Tue Oct 05 2004 - 16:00:07 CDT)
amidated C-terminus and pyroglutamate
- Han Choe (Sat Jan 31 2004 - 04:01:05 CST)
aminoacid mutation
- Jim Phillips (Tue Oct 28 2003 - 11:08:05 CST)
- Justin Gullingsrud (Tue Oct 28 2003 - 10:55:42 CST)
- Brian Bennion (Tue Oct 28 2003 - 10:22:38 CST)
- Y U Sasidhar (Mon Oct 27 2003 - 22:25:00 CST)
- Ioana Cozmuta (Mon Oct 27 2003 - 18:23:58 CST)
An APBS problem
- John Stone (Fri Jan 27 2006 - 13:56:03 CST)
- Zhiyong Zhang (Thu Jan 26 2006 - 20:38:15 CST)
an arrow for a dipole
- John Stone (Wed Jan 28 2004 - 18:26:45 CST)
- Marcelo A. Carignano (Wed Jan 28 2004 - 13:30:41 CST)
an inconsistance between psf file and coor file after equilibration
- John Stone (Tue May 24 2005 - 11:12:22 CDT)
- Baoqiang Cao (Sun May 22 2005 - 22:28:16 CDT)
an old...old..old..question
- Axel Kohlmeyer (Mon Jan 29 2007 - 18:33:14 CST)
- Tsu-Fan Cheng (Mon Jan 29 2007 - 16:24:16 CST)
An remark on PoV output
- dstrahs_at_pace.edu (Mon May 14 2007 - 17:52:17 CDT)
- John Stone (Mon May 14 2007 - 12:57:26 CDT)
- Szymon Zietkiewicz (Sat May 12 2007 - 06:45:01 CDT)
analysing big trajectories
- Oliver Beckstein (Wed Nov 21 2007 - 19:13:32 CST)
- Thomas Evangelidis (Tue Nov 20 2007 - 18:09:26 CST)
- John Stone (Tue Nov 20 2007 - 16:26:34 CST)
- John Stone (Tue Nov 20 2007 - 14:41:35 CST)
- Oliver Beckstein (Tue Nov 20 2007 - 14:28:45 CST)
analysing big trajectories (fwd)
- Oliver Beckstein (Wed Nov 21 2007 - 19:05:14 CST)
- L. Michel Espinoza-Fonseca (Tue Nov 20 2007 - 18:39:03 CST)
- John Stone (Tue Nov 20 2007 - 18:32:23 CST)
- L. Michel Espinoza-Fonseca (Tue Nov 20 2007 - 18:03:25 CST)
- John Stone (Tue Nov 20 2007 - 17:30:59 CST)
Analysis
- Anthony Cruz (Thu Mar 23 2006 - 14:01:45 CST)
- John Stone (Thu Mar 23 2006 - 10:12:01 CST)
- Anthony Cruz (Thu Mar 23 2006 - 10:20:13 CST)
- Anthony Cruz (Mon Mar 20 2006 - 12:33:53 CST)
- John Stone (Wed Mar 08 2006 - 10:55:49 CST)
- Anthony Cruz (Wed Mar 08 2006 - 13:37:21 CST)
analysis of energy with water excluded from dcd file
- John Stone (Sun May 23 2004 - 15:46:26 CDT)
- li (Mon May 17 2004 - 01:28:40 CDT)
analysis script causes vmd to crash
- Axel Kohlmeyer (Thu Feb 02 2006 - 22:03:15 CST)
- Eliud Oloo (Thu Feb 02 2006 - 19:26:35 CST)
analysis scripts: VMD text /batch mode
- Justin Gullingsrud (Tue Aug 10 2004 - 13:31:01 CDT)
- John Stone (Tue Aug 10 2004 - 13:03:22 CDT)
- Vani Krishna (Tue Aug 10 2004 - 11:46:12 CDT)
Analyzing pdb files remotely with VMD installed locally
- Jindal Shah (Wed Sep 07 2005 - 20:09:32 CDT)
- John Stone (Wed Sep 07 2005 - 16:14:26 CDT)
- Jindal Shah (Wed Sep 07 2005 - 11:54:00 CDT)
- Michel Espinoza-Fonseca (Wed Sep 07 2005 - 11:48:02 CDT)
- John Stone (Wed Sep 07 2005 - 11:33:09 CDT)
- Jindal Shah (Wed Sep 07 2005 - 11:25:50 CDT)
angle between protein domains:
- PARMINDER MANKOO (Tue Jun 26 2007 - 15:46:02 CDT)
angle between two vectors
- Luis Gracia (Wed Jan 12 2005 - 12:31:58 CST)
- John Stone (Tue Jan 11 2005 - 19:05:43 CST)
- Ekta Khurana (Tue Jan 11 2005 - 18:56:54 CST)
angles
- John Stone (Thu Jul 29 2004 - 10:53:38 CDT)
- pinisetty dinesh (Wed Jul 28 2004 - 21:11:12 CDT)
Angles and dihedral generation
- Cesar Luis Avila (Tue Sep 05 2006 - 08:15:18 CDT)
- Jim Phillips (Mon Sep 04 2006 - 16:44:44 CDT)
- Cesar Luis Avila (Mon Sep 04 2006 - 10:00:35 CDT)
- Jim Phillips (Sat Sep 02 2006 - 15:25:12 CDT)
- Cesar Luis Avila (Fri Sep 01 2006 - 20:02:36 CDT)
Animate data
- Nguyen Hoang Phuong (Fri Apr 26 2002 - 12:31:38 CDT)
animate delete
- John Stone (Fri Jul 11 2003 - 10:20:11 CDT)
- Hannes Loeffler (Fri Jul 11 2003 - 01:37:45 CDT)
animate error handling
- John Stone (Fri Dec 09 2005 - 09:50:32 CST)
- Jérôme Hénin (Fri Dec 09 2005 - 05:04:52 CST)
animate read command
- Jim Pfaendtner (Tue Feb 05 2008 - 13:55:29 CST)
- John Stone (Tue Feb 05 2008 - 14:16:00 CST)
Animate the "beta" field
- John Stone (Mon Jun 21 2004 - 14:17:38 CDT)
- emmanuel.levy1_at_free.fr (Sat May 29 2004 - 14:05:16 CDT)
animate transparency
- Axel Kohlmeyer (Fri Jan 06 2006 - 07:07:43 CST)
- Yu Chen (Thu Jan 05 2006 - 15:07:37 CST)
animate with varying atom numbers
- Axel Kohlmeyer (Sat Jun 10 2006 - 04:55:47 CDT)
- Rene (Fri Jun 09 2006 - 12:53:59 CDT)
animate write of a selection in Linux version of VMD
- Pawel Weronski (Wed Jan 31 2007 - 16:24:02 CST)
- John Stone (Wed Jan 31 2007 - 16:10:46 CST)
- Pawel Weronski (Wed Jan 31 2007 - 15:54:25 CST)
animated colors, trajectories, etc..
- John Stone (Tue Feb 19 2002 - 18:41:02 CST)
animated gif option in VMD for Windows.
- John Stone (Thu Aug 24 2006 - 15:00:01 CDT)
- Axel Kohlmeyer (Thu Aug 24 2006 - 14:45:53 CDT)
- Ravinder Abrol (Thu Aug 24 2006 - 14:14:58 CDT)
animating an iso-surface
- Axel Kohlmeyer (Wed May 26 2004 - 15:48:49 CDT)
- Randall Hall (Wed May 26 2004 - 13:18:03 CDT)
animating drawn objects
- John Stone (Thu Apr 01 2004 - 13:26:17 CST)
- Vlad Cojocaru (Thu Apr 01 2004 - 10:20:56 CST)
Animating Trajectories/NAMD Output files
- Barry Isralewitz (Wed May 08 2002 - 11:37:05 CDT)
- Storr, Mark (Wed May 08 2002 - 11:16:23 CDT)
- Barry Isralewitz (Wed May 08 2002 - 11:01:26 CDT)
- Barry Isralewitz (Tue May 07 2002 - 22:15:21 CDT)
- Storr, Mark (Tue May 07 2002 - 13:06:43 CDT)
Animation
- John Stone (Wed Apr 10 2002 - 09:18:24 CDT)
- Paul Hubbard (Tue Apr 09 2002 - 15:09:40 CDT)
- Justin Gullingsrud (Tue Apr 09 2002 - 14:36:36 CDT)
- John Stone (Tue Apr 09 2002 - 14:24:36 CDT)
- Paul Hubbard (Tue Apr 09 2002 - 14:12:49 CDT)
- Simon Hogg (Wed Aug 30 2000 - 19:13:17 CDT)
- John Stone (Wed Aug 30 2000 - 13:00:24 CDT)
- B. Bennion (Wed Aug 30 2000 - 11:47:25 CDT)
- John Stone (Wed Aug 30 2000 - 11:06:03 CDT)
- spezia_at_caspur.it (Tue Aug 29 2000 - 09:26:07 CDT)
animation and reps
- Aitor Gonzalez (Mon Apr 09 2001 - 08:17:52 CDT)
- Justin Gullingsrud (Wed Apr 04 2001 - 14:15:19 CDT)
- John Stone (Sat Mar 31 2001 - 11:02:23 CST)
- B. Bennion (Sat Mar 31 2001 - 01:40:43 CST)
animation from files with different numbers of atoms
- Justin Gullingsrud (Sat Jun 22 2002 - 17:07:56 CDT)
- Jennifer Young (Sat Jun 22 2002 - 16:21:01 CDT)
animation of an atom diffusion inside a bulk crystal
- Axel Kohlmeyer (Fri Feb 01 2008 - 05:01:33 CST)
- massimo camarda (Fri Feb 01 2008 - 02:27:59 CST)
animation question
- #WONG CHEE HOW# (Fri Mar 28 2003 - 00:10:24 CST)
- John Stone (Thu Mar 27 2003 - 22:51:57 CST)
- Randall Hall (Thu Mar 27 2003 - 12:37:35 CST)
animation with PDBs
- John Stone (Thu Nov 07 2002 - 10:33:26 CST)
- Ross J. Toedte (Thu Nov 07 2002 - 10:10:09 CST)
animations with molecular surfaces
- John Stone (Mon Jun 24 2002 - 14:17:12 CDT)
- Will Sheffler (Sat Jun 22 2002 - 02:32:12 CDT)
ANN: BioCoRE now includes remote job submission
- biocore_at_ks.uiuc.edu (Fri Mar 30 2001 - 13:26:32 CST)
Announce: CPMD VMD visualization tutorial
- Axel Kohlmeyer (Thu Dec 18 2003 - 13:25:56 CST)
Announce: JMV version 0.7 is available!
- John Stone (Fri Nov 02 2001 - 15:30:28 CST)
- John Stone (Tue Oct 30 2001 - 16:15:33 CST)
Announce: MDTools update
- John Stone (Thu Nov 30 2000 - 14:51:44 CST)
Announce: New VMD Images and Movies tutorial posted online...
- John Stone (Wed Jan 31 2007 - 00:23:46 CST)
Announce: new vmdmovie script available...
- John Stone (Mon Apr 08 2002 - 22:23:01 CDT)
Announce: Struc. Bio. Software DB updates
- John Stone (Thu Dec 06 2001 - 11:21:57 CST)
Announce: Structural Biology Software Database
- John Stone (Thu Jan 04 2001 - 14:04:34 CST)
Announce: Updated VMD 1.8 plugins available
- John Stone (Fri Feb 14 2003 - 16:47:39 CST)
Announce: VMD 1.4 beta 1
- John Stone (Mon Oct 04 1999 - 17:07:49 CDT)
Announce: VMD 1.4 beta 2
- John Stone (Tue Nov 09 1999 - 15:19:35 CST)
Announce: VMD 1.4 beta 3
- John Stone (Thu Nov 18 1999 - 16:08:16 CST)
Announce: VMD 1.4 beta 4
- John Stone (Wed Dec 22 1999 - 16:40:53 CST)
Announce: VMD 1.6 Released
- John Stone (Fri Dec 22 2000 - 17:17:04 CST)
Announce: VMD 1.6.1 Released!
- John Stone (Tue Apr 24 2001 - 10:03:39 CDT)
Announce: VMD 1.6.1a2 is available
- John Stone (Mon Mar 05 2001 - 15:17:19 CST)
Announce: VMD 1.6.1a3 is available
- John Stone (Mon Mar 12 2001 - 17:46:34 CST)
Announce: VMD 1.6a1 is available
- Kim Branson (Sun Aug 27 2000 - 23:13:24 CDT)
- John Stone (Thu Aug 24 2000 - 18:43:53 CDT)
Announce: VMD 1.6a2 is available
- John Stone (Thu Sep 14 2000 - 02:38:08 CDT)
Announce: VMD 1.6a3 is available
- John Stone (Fri Oct 06 2000 - 14:37:27 CDT)
Announce: VMD 1.6a4 is available
- John Stone (Tue Nov 21 2000 - 00:19:42 CST)
Announce: VMD 1.7 Released!!
- John Stone (Thu Aug 02 2001 - 14:26:09 CDT)
Announce: VMD 1.7.1 released!
- John Stone (Sun Dec 23 2001 - 22:53:26 CST)
Announce: VMD 1.7.1b1 test version is available...
- John Stone (Sat Dec 22 2001 - 21:56:00 CST)
- John Stone (Wed Dec 05 2001 - 21:14:37 CST)
Announce: VMD 1.7.2 (Windows-only GUI update) is available
- John Stone (Wed Feb 06 2002 - 19:07:55 CST)
Announce: VMD 1.7b1 is available!
- John Stone (Tue Jul 10 2001 - 18:15:45 CDT)
Announce: VMD 1.7b2 is available!
- John Stone (Wed Jul 25 2001 - 10:12:11 CDT)
Announce: VMD 1.8 is available!
- John Stone (Mon Dec 09 2002 - 15:22:28 CST)
Announce: VMD 1.8.1 released!!
- John Stone (Sun Jun 15 2003 - 23:37:12 CDT)
- MengJuei Hsieh (Sun Jun 15 2003 - 22:47:23 CDT)
- John Stone (Sun Jun 15 2003 - 15:38:19 CDT)
Announce: VMD 1.8.2 released!!
- John Stone (Fri Dec 05 2003 - 14:53:13 CST)
Announce: VMD 1.8.3 released!!
- John Stone (Wed Feb 16 2005 - 00:09:04 CST)
Announce: VMD 1.8.4 Released!!
- John Stone (Mon Apr 17 2006 - 11:37:34 CDT)
Announce: VMD 1.8.5 Released!
- John Stone (Fri Aug 25 2006 - 23:51:22 CDT)
Announce: VMD 1.8.6 Released!
- John Stone (Sun Apr 08 2007 - 00:51:52 CDT)
Announce: VMD at Super Computing 99
- Kirby Vandivort (Thu Nov 11 1999 - 16:32:51 CST)
Announce: VMD Users Image Gallery
- John Stone (Thu Feb 22 2001 - 13:43:31 CST)
Announce: ZoomSeq -- sequence browser for VMD
- Barry Isralewitz (Thu Dec 28 2000 - 14:54:20 CST)
ANNOUNCEMENT: BioCoRe
- Robert Brunner (Fri Mar 03 2000 - 10:22:28 CST)
Announcement: QM/MM Workshop
- Axel Kohlmeyer (Thu Apr 19 2007 - 09:14:50 CDT)
Announcing MDSalon!
- Jim Phillips (Tue Nov 21 2000 - 15:15:21 CST)
Another feature request for vmd 1.8
- John Stone (Wed Oct 30 2002 - 10:41:11 CST)
- David Chalmers (Mon Oct 28 2002 - 20:02:15 CST)
another trivial question regarding the key setting.
- Justin Gullingsrud (Mon Mar 25 2002 - 10:26:37 CST)
- John Stone (Mon Mar 25 2002 - 09:07:14 CST)
- Margaret Cheung (Mon Mar 25 2002 - 06:28:09 CST)
antialiasing
- Axel Kohlmeyer (Wed Sep 13 2006 - 14:10:30 CDT)
- John Stone (Wed Sep 13 2006 - 14:07:44 CDT)
- Wen Li (Wed Sep 13 2006 - 14:00:02 CDT)
- Axel Kohlmeyer (Wed Sep 13 2006 - 13:56:38 CDT)
- Wen Li (Wed Sep 13 2006 - 13:36:53 CDT)
Antialiasing ?
- Stéphane Teletchéa (Thu Oct 24 2002 - 02:16:35 CDT)
- John Stone (Wed Oct 23 2002 - 10:07:15 CDT)
- Marc Baaden (Wed Oct 23 2002 - 08:45:22 CDT)
antialiasing problem
- Eamon Caddigan (Thu Nov 20 2003 - 15:15:00 CST)
- ailong (Thu Nov 20 2003 - 12:54:22 CST)
any body else have VMD problems with Linux + ATI FireGL X1-256p + fglrx-glc22-4.3.0-3.7.0
- John Stone (Wed Feb 11 2004 - 20:02:26 CST)
- John Stone (Wed Feb 11 2004 - 18:33:51 CST)
- Dallas Warren (Wed Feb 11 2004 - 17:14:28 CST)
- chris.harwell_at_pharma.novartis.com (Wed Feb 11 2004 - 16:16:46 CST)
Any methods for real stereo viewing with Mac and OsX
- Peter Engelhardt (Sat Nov 06 2004 - 16:51:32 CST)
- John Stone (Sat Nov 06 2004 - 12:41:30 CST)
- Peter Engelhardt (Sat Nov 06 2004 - 13:19:33 CST)
Any way for comparing two structures??
- Luis Gracia (Tue May 31 2005 - 14:07:45 CDT)
- Blake Charlebois (Tue May 31 2005 - 10:50:32 CDT)
- Dmitry Osolodkin (Tue May 31 2005 - 09:11:07 CDT)
- Dmitry Osolodkin (Tue May 31 2005 - 08:58:29 CDT)
Any way to output contact map data
- Luis Gracia (Wed Mar 21 2007 - 11:12:32 CDT)
- Guo Zhi (Wed Mar 21 2007 - 03:32:37 CDT)
- John Stone (Wed Mar 21 2007 - 01:42:15 CDT)
- Guo Zhi (Tue Mar 20 2007 - 09:18:03 CDT)
Anyone have catdcd-4.0 for BlueGene?
- Axel Kohlmeyer (Mon Jan 08 2007 - 16:36:38 CST)
- John Stone (Mon Jan 08 2007 - 15:41:10 CST)
- Joshua D. Moore (Mon Jan 08 2007 - 15:34:09 CST)
Anyone have cyclic structures I can use for testing?
- John Stone (Tue Feb 20 2007 - 01:28:29 CST)
Anyone using ATI X1600?
- Christoph Weber (Mon Jul 17 2006 - 16:18:00 CDT)
- John Stone (Mon Jul 17 2006 - 11:17:25 CDT)
- Christoph Weber (Fri Jul 14 2006 - 18:35:35 CDT)
- John Stone (Thu Jul 13 2006 - 10:42:38 CDT)
- Yu Zhou (Thu Jul 13 2006 - 07:39:59 CDT)
APBS data visualization
- Vlad Cojocaru (Tue Jan 25 2005 - 13:08:23 CST)
APBS dx colors depend on order of molec files loaded???
- John Stone (Thu Oct 18 2007 - 15:08:21 CDT)
- Chari, Ravi (Thu Oct 18 2007 - 14:52:48 CDT)
APBS error
- Vlad Cojocaru (Thu Feb 17 2005 - 08:24:07 CST)
- Armen Nalian (Wed Feb 16 2005 - 18:58:54 CST)
APBS plugin
- Nathan C. Rockwell (Thu Dec 08 2005 - 15:17:48 CST)
- John Stone (Thu Dec 08 2005 - 11:16:19 CST)
- Anthony Cruz (Thu Dec 08 2005 - 14:07:37 CST)
- John Stone (Thu Dec 08 2005 - 10:14:01 CST)
- Mamoru Yamanishi (Wed Dec 07 2005 - 21:48:56 CST)
- John Stone (Wed Dec 07 2005 - 17:08:21 CST)
- Mamoru Yamanishi (Wed Dec 07 2005 - 14:18:48 CST)
- Anthony Cruz (Wed Dec 07 2005 - 14:06:06 CST)
- John Stone (Tue Jan 25 2005 - 11:22:53 CST)
- Vlad Cojocaru (Tue Jan 25 2005 - 09:36:11 CST)
APBS Plugin for VMD
- Eamon Caddigan (Mon Feb 23 2004 - 14:14:33 CST)
Apologies
- Adrain Koh (Wed Nov 10 2004 - 04:12:55 CST)
Apologizes for "How to select some sugar atoms"
- Jean Richelle (Fri Apr 21 2006 - 00:23:40 CDT)
Appending to DCD file with "animate write"
- Chang, Christopher (Wed Nov 16 2005 - 17:05:41 CST)
- John Stone (Wed Nov 16 2005 - 15:01:02 CST)
- Chang, Christopher (Wed Nov 16 2005 - 13:42:36 CST)
- Chang, Christopher (Wed Nov 16 2005 - 13:11:30 CST)
Apple hardware configuration
- John Stone (Thu Mar 03 2005 - 15:46:17 CST)
- John Stone (Mon Feb 28 2005 - 10:48:25 CST)
- fabrizio cleri (Sat Feb 26 2005 - 02:32:42 CST)
- fabrizio cleri (Fri Feb 25 2005 - 05:29:24 CST)
Apple VMD not showing gro file properly
- John Stone (Fri Feb 13 2004 - 10:52:02 CST)
- Justin Gullingsrud (Fri Feb 13 2004 - 09:50:21 CST)
- Jim Nettles (Thu Feb 12 2004 - 23:25:20 CST)
- John Stone (Thu Feb 12 2004 - 17:22:02 CST)
- John Stone (Tue Feb 10 2004 - 09:56:58 CST)
- barrett (Tue Feb 10 2004 - 07:56:50 CST)
applying 6dof input forces
- wmsmith (Mon Jul 11 2005 - 12:03:52 CDT)
- wmsmith (Tue Jul 05 2005 - 17:10:09 CDT)
- Charles Moad (Tue Jul 05 2005 - 16:13:02 CDT)
applying forces on a protein in VMD
- John Stone (Wed Dec 05 2007 - 00:58:14 CST)
- Peter Schellenberg (Tue Dec 04 2007 - 02:05:58 CST)
April promo on w4tches
- Randell Lund (Mon Mar 31 2008 - 22:03:54 CDT)
Archived Spam in the VMD-L Mailing List
- John Stone (Tue Aug 14 2007 - 10:13:27 CDT)
- Audrey Salazar (Tue Aug 14 2007 - 10:00:30 CDT)
- John Stone (Tue Aug 14 2007 - 10:07:37 CDT)
area of protein cross sections
- dimka (Mon Aug 15 2005 - 14:29:38 CDT)
Area per lipid
- Saladino, Alex (Thu Aug 26 2004 - 11:00:55 CDT)
Ask the Cluster Expert
- Nick I (Tue Oct 25 2005 - 11:45:59 CDT)
Assigning Color Codes for stress/force in .xyz trajectory files
- Peter Freddolino (Fri Feb 09 2007 - 10:48:49 CST)
- Peter Freddolino (Fri Feb 09 2007 - 07:57:09 CST)
- John Stone (Fri Feb 09 2007 - 02:56:59 CST)
- Adrian Koh (Fri Feb 09 2007 - 00:08:26 CST)
assigning variable names using a for loop
- Olaf Lenz (Thu Mar 29 2007 - 04:38:08 CDT)
- namd vmd (Thu Mar 29 2007 - 03:21:45 CDT)
assigning variables for representations
- John Stone (Thu Sep 05 2002 - 13:53:27 CDT)
- Vlad Cojocaru (Wed Sep 04 2002 - 07:10:40 CDT)
assignment of "measure contacts" output to tcl variables
- Vlad Cojocaru (Tue Apr 17 2007 - 09:50:49 CDT)
- Vlad Cojocaru (Tue Apr 17 2007 - 07:25:19 CDT)
athlon64 version of vmd
- John Stone (Fri Mar 05 2004 - 17:39:47 CST)
- Brian Bennion (Fri Mar 05 2004 - 16:30:57 CST)
- Jerry Ebalunode (Fri Mar 05 2004 - 13:08:52 CST)
ATI 3.7.6 driver bugs (and VMD..)
- John Stone (Wed May 05 2004 - 16:46:01 CDT)
ATI crashes, use of setenv VMD_EXCL_GL_EXTENSIONS
- Dr. Peter Schellenberg (Mon Jun 06 2005 - 02:28:21 CDT)
ATI fglrx 3.11 drivers for Radeon 8500 LE with linux 2.6 kernel, quad buffered stereo on sony G520???
- John Stone (Wed Aug 25 2004 - 09:23:09 CDT)
- Dr. Daniel James White PhD (Wed Aug 25 2004 - 03:44:24 CDT)
ati interlace mode
- Osmany guirola Cruz (Sat May 20 2006 - 14:52:25 CDT)
- John Stone (Fri May 19 2006 - 11:45:48 CDT)
- Sabuj Pattanayek (Thu May 18 2006 - 20:54:06 CDT)
- John Stone (Thu May 18 2006 - 18:32:03 CDT)
- Sabuj Pattanayek (Wed May 17 2006 - 16:44:11 CDT)
- Osmany guirola Cruz (Wed May 17 2006 - 13:45:54 CDT)
- John Stone (Wed May 17 2006 - 13:07:24 CDT)
- Osmany guirola Cruz (Tue May 16 2006 - 14:13:55 CDT)
- John Stone (Tue May 16 2006 - 10:47:03 CDT)
- Osmany guirola Cruz (Tue May 16 2006 - 07:33:00 CDT)
- Sabuj Pattanayek (Mon May 15 2006 - 17:00:20 CDT)
- Osmany guirola Cruz (Mon May 15 2006 - 10:03:44 CDT)
- John Stone (Mon May 15 2006 - 12:01:50 CDT)
- Osmany guirola Cruz (Fri May 12 2006 - 12:12:42 CDT)
ATI radeon 8500 and Linux quad buffered stereo
- Dr. Daniel James White PhD (Tue Sep 02 2003 - 03:09:28 CDT)
ati radeon 9200
- Osmany Guirola Cruz (Thu Dec 22 2005 - 14:58:33 CST)
- John Stone (Thu Dec 22 2005 - 10:18:17 CST)
- Osmany Guirola Cruz (Thu Dec 22 2005 - 10:00:07 CST)
ATI radeon x300
- John Stone (Fri Apr 01 2005 - 14:06:16 CST)
- jerry xu (Fri Apr 01 2005 - 12:42:59 CST)
atom coloring
- Laurence F. Wood (Tue Mar 12 2002 - 16:39:37 CST)
- Paul Grayson (Tue Mar 12 2002 - 14:33:29 CST)
- Dominik Horinek (Mon Mar 11 2002 - 17:59:30 CST)
atom fitting in non-PDB order
- James Melville (Mon Feb 07 2005 - 21:27:47 CST)
atom index number
- Axel Kohlmeyer (Thu Sep 27 2007 - 02:42:42 CDT)
- Naser, Md Abu (Thu Sep 27 2007 - 01:28:29 CDT)
atom index starting at 0
- John Stone (Thu Aug 11 2005 - 16:19:57 CDT)
- John Stone (Mon Jan 10 2005 - 18:38:51 CST)
- Andrew Dalke (Fri Jan 07 2005 - 17:36:50 CST)
- John Stone (Fri Jan 07 2005 - 16:10:41 CST)
- pl (Fri Jan 07 2005 - 09:47:00 CST)
Atom name label
- John Stone (Wed Mar 08 2006 - 09:42:02 CST)
- FyD (Wed Mar 08 2006 - 04:26:17 CST)
Atom names, RES-IDS...!!!
- JC Gumbart (Mon Jun 04 2007 - 18:18:45 CDT)
- Raul Araya (Fri Jun 01 2007 - 23:55:33 CDT)
ATOM or HETATM record
- Joseph E. Curtis (Fri Jan 07 2005 - 16:46:16 CST)
atom position update for reference atom list
- John Stone (Mon Jun 18 2007 - 16:43:13 CDT)
- Philipp Schoen1 (Wed Jun 13 2007 - 08:28:30 CDT)
Atom renumbering in DCD file
- Chang, Christopher (Tue Aug 09 2005 - 14:15:03 CDT)
- Justin Gullingsrud (Tue Aug 09 2005 - 13:30:08 CDT)
- John Stone (Mon Aug

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