VMD-L Mailing List

From: Sara baretller (sarabiocomputation_at_gmail.com)
Date: Thu Aug 11 2011 - 16:42:32 CDT

Hi John

i made all my selections before i started the loop and then looped over the
selections and update the selections

so where should i add the waitfor all command ?? is it only useful when
using animate ??

I am not using animate but regular loop

Thank you

On Thu, Aug 11, 2011 at 5:36 PM, John Stone <johns_at_ks.uiuc.edu> wrote:

>
> Hi,
> When running your analysis on the supercomputer, did you make
> sure to use "waitfor all" when loading your files?
>
> Cheers,
> John Stone
> vmd_at_ks.uiuc.edu
>
> On Thu, Aug 11, 2011 at 04:49:08PM -0400, Sara baretller wrote:
> > Hi all,
> >
> > i have a question about loading vmd to super computer , so my script
> works
> > fine in the local computer and i get data
> > but when i run th script in super computer i get simallar data to what
> i
> > got in local computer but after a certain number of frame, the data
> is
> > the same it looks like it does not load after the a certain frame , i
> > tried loading from the that specific frames and still got same frozen
> data
> > ,
> >
> > does any body have any idea what is the problem thank you
> >
> > 9.64 32.33 20.49 32.83 10.43 4.46 28.78
> > 10.20 34.93 20.26 32.89 11.84 5.97 30.08
> > 9.96 35.54 19.75 32.66 11.95 6.48 29.27
> > 10.96 37.26 19.74 35.12 13.10 10.53 25.21
> > 12.39 40.20 22.51 35.56 13.37 9.37 29.11
> > 10.58 35.98 19.18 32.92 9.49 7.77 29.00
> > 11.87 37.69 19.44 32.70 10.60 7.94 28.34
> > 11.86 38.42 18.62 32.74 9.37 8.53 28.51
> > 12.30 36.45 18.08 34.30 10.28 8.76 29.13
> >
> > after here data frozen which does not happen when doing analysis in
> local
> > computer
> >
> > 12.30 36.45 18.08 34.30 10.28 8.76 29.13
> > 12.30 36.45 18.08 34.30 10.28 8.76 29.13
> > 12.30 36.45 18.08 34.30 10.28 8.76 29.13
> > 12.30 36.45 18.08 34.30 10.28 8.76 29.13
>
> --
> NIH Resource for Macromolecular Modeling and Bioinformatics
> Beckman Institute for Advanced Science and Technology
> University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> http://www.ks.uiuc.edu/~johns/ Phone: 217-244-3349
> http://www.ks.uiuc.edu/Research/vmd/ Fax: 217-244-6078
>