VMD-L Mailing List

12364 messages sorted by: [ author ] [ date ] [ subject ] [ attachment ]
About this archive

Starting: Thu Dec 19 1996 - 11:40:41 CST
Ending: Thu Aug 28 2008 - 18:14:40 CDT

• Calculating pocket volume ben rodriguez (Thu Aug 28 2008 - 16:37:55 CDT)
  • Re: Calculating pocket volume Peter Freddolino (Thu Aug 28 2008 - 17:27:44 CDT)
• TXT program editor Alejandro Ortega (Thu Aug 28 2008 - 14:43:14 CDT)
  • Re: TXT program editor Peter Freddolino (Thu Aug 28 2008 - 15:06:53 CDT)
    • Re: TXT program editor Emily Moore (Thu Aug 28 2008 - 17:09:42 CDT)
      • Re: TXT program editor Axel Kohlmeyer (Thu Aug 28 2008 - 17:51:39 CDT)
      • Re: TXT program editor Emily Moore (Thu Aug 28 2008 - 18:13:01 CDT)
  • Re: TXT program editor Axel Kohlmeyer (Thu Aug 28 2008 - 15:50:21 CDT)
  • Re: TXT program editor Sabuj Pattanayek (Thu Aug 28 2008 - 17:03:11 CDT)
  • Re: namd-l: TXT program editor Giovanni Bellesia (Thu Aug 28 2008 - 16:21:03 CDT)
• diffusion coefficient from rmsd Rudra Banerjee (Wed Aug 27 2008 - 21:55:28 CDT)
  • Re: namd-l: diffusion coefficient from rmsd Axel Kohlmeyer (Wed Aug 27 2008 - 22:39:52 CDT)
    • Re: namd-l: diffusion coefficient from rmsd bo liu (Thu Aug 28 2008 - 01:38:38 CDT)
• HOLE PROGRAM Semorale (Wed Aug 27 2008 - 18:23:10 CDT)
• catDCD Robert Fenwick (Wed Aug 27 2008 - 08:01:38 CDT)
  • Re: catDCD John Stone (Wed Aug 27 2008 - 11:58:58 CDT)
    • Re: catDCD Robert Fenwick (Wed Aug 27 2008 - 12:16:14 CDT)
  • Re: catDCD Peter Freddolino (Wed Aug 27 2008 - 22:04:10 CDT)
• segfault using VMD 1.8.6 32-bit Linux and chromium 1.9 Chris Berthiaume (Mon Aug 25 2008 - 20:50:12 CDT)
  • Re: segfault using VMD 1.8.6 32-bit Linux and chromium 1.9 John Stone (Mon Aug 25 2008 - 22:45:15 CDT)
    • Re: segfault using VMD 1.8.6 32-bit Linux and chromium 1.9 Chris Berthiaume (Tue Aug 26 2008 - 12:23:11 CDT)
• Failure to open PDB files hzf101_at_psu.edu (Mon Aug 25 2008 - 13:12:52 CDT)
  • Re: Failure to open PDB files Axel Kohlmeyer (Mon Aug 25 2008 - 14:52:38 CDT)
• resid of water that is hydrogen bonded nahren manuel (Mon Aug 25 2008 - 07:35:22 CDT)
  • Re: resid of water that is hydrogen bonded Axel Kohlmeyer (Mon Aug 25 2008 - 14:56:41 CDT)
    • again :resid of water that is H bonded nahren manuel (Mon Aug 25 2008 - 21:55:40 CDT)
• measure gofr - how is g(r) normalised? Maxim Paliy (Mon Aug 25 2008 - 05:07:37 CDT)
  • Re: measure gofr - how is g(r) normalised? Axel Kohlmeyer (Mon Aug 25 2008 - 15:14:35 CDT)
• Python callbacks in VMD James E. Magee (Wed Aug 20 2008 - 06:41:52 CDT)
  • Re: Python callbacks in VMD John Stone (Wed Aug 20 2008 - 22:59:53 CDT)
• Inorganic Builder Plugin max_at_liaad.up.pt (Wed Aug 20 2008 - 04:57:09 CDT)
  • Re: Inorganic Builder Plugin John Stone (Wed Aug 20 2008 - 23:01:45 CDT)
  • Re: Inorganic Builder Plugin Robert Brunner (Thu Aug 21 2008 - 08:31:19 CDT)
• Trouble updating frames in script Emily Moore (Tue Aug 19 2008 - 12:21:11 CDT)
  • Re: Trouble updating frames in script Axel Kohlmeyer (Tue Aug 19 2008 - 13:06:44 CDT)
    • Re: Trouble updating frames in script Emily Moore (Tue Aug 19 2008 - 14:23:29 CDT)
      • Re: Trouble updating frames in script Axel Kohlmeyer (Tue Aug 19 2008 - 15:14:42 CDT)
• how to call dssp in a script Yuan Feng (Sun Aug 17 2008 - 18:51:56 CDT)
  • Re: how to call dssp in a script John Stone (Mon Aug 18 2008 - 11:17:44 CDT)
  • Re: how to call dssp in a script Axel Kohlmeyer (Mon Aug 18 2008 - 10:42:14 CDT)
• Question about trace vmd_frame(molid) Oren Elrad (Fri Aug 15 2008 - 11:33:02 CDT)
  • Re: Question about trace vmd_frame(molid) Axel Kohlmeyer (Fri Aug 15 2008 - 12:12:03 CDT)
    • Re: Question about trace vmd_frame(molid) Oren Elrad (Fri Aug 15 2008 - 13:24:25 CDT)
      • Re: Question about trace vmd_frame(molid) Axel Kohlmeyer (Fri Aug 15 2008 - 13:55:54 CDT)
• RMSD SCRIPT Semorale (Fri Aug 15 2008 - 05:12:11 CDT)
  • Re: RMSD SCRIPT John Stone (Tue Aug 19 2008 - 01:01:07 CDT)
• LAMMPS Trajectory Bond Specification nicholas lee (Thu Aug 14 2008 - 14:25:07 CDT)
  • Re: LAMMPS Trajectory Bond Specification Nazanin Samadi (Thu Aug 14 2008 - 15:24:45 CDT)
  • Re: LAMMPS Trajectory Bond Specification Axel Kohlmeyer (Thu Aug 14 2008 - 16:24:13 CDT)
• axes Nazanin Samadi (Wed Aug 13 2008 - 14:21:06 CDT)
  • Re: axes John Stone (Tue Aug 19 2008 - 00:54:31 CDT)
• renumbering residues Roman Petrenko (Wed Aug 13 2008 - 13:50:44 CDT)
  • Re: renumbering residues John Stone (Wed Aug 13 2008 - 18:00:59 CDT)
• label all residues Roman Petrenko (Wed Aug 13 2008 - 10:09:17 CDT)
  • Re: label all residues Peter Freddolino (Wed Aug 13 2008 - 10:29:20 CDT)
• catDCD- convert DCD format Semorale (Tue Aug 12 2008 - 16:10:27 CDT)
  • Re: catDCD- convert DCD format John Stone (Wed Aug 13 2008 - 10:58:21 CDT)
• protein-water hydrogen bonds Roman Petrenko (Tue Aug 12 2008 - 10:05:46 CDT)
  • Re: protein-water hydrogen bonds Axel Kohlmeyer (Tue Aug 12 2008 - 10:37:45 CDT)
    • Re: protein-water hydrogen bonds Roman Petrenko (Tue Aug 12 2008 - 10:52:32 CDT)
      • Re: protein-water hydrogen bonds Axel Kohlmeyer (Tue Aug 12 2008 - 10:53:35 CDT)
• rmsd Shadi Mirzae (Mon Aug 11 2008 - 13:52:14 CDT)
  • Re: rmsd John Stone (Tue Aug 19 2008 - 01:02:57 CDT)
• problem controlling orientation of the simulation box drawn by pbctools shiladitya_at_jncasr.ac.in (Sun Aug 10 2008 - 10:52:54 CDT)
  • Re: problem controlling orientation of the simulation box drawn by pbctools Axel Kohlmeyer (Sun Aug 10 2008 - 11:11:34 CDT)
• save selected residues bo baker (Sun Aug 10 2008 - 06:04:37 CDT)
  • Re: save selected residues Axel Kohlmeyer (Sun Aug 10 2008 - 09:48:15 CDT)
    • Re: save selected residues bo baker (Mon Aug 11 2008 - 06:31:12 CDT)
      • Re: save selected residues Axel Kohlmeyer (Mon Aug 11 2008 - 11:01:48 CDT)
• backbone dihedral angles over trajectory Roman Petrenko (Fri Aug 08 2008 - 17:05:59 CDT)
  • Re: backbone dihedral angles over trajectory Giovanni Bellesia (Fri Aug 08 2008 - 17:36:44 CDT)
• request ability to append in CatDCD (and NAMD) Andrew Jewett (Fri Aug 08 2008 - 14:15:46 CDT)
  • Re: request ability to append in CatDCD (and NAMD) John Stone (Fri Aug 08 2008 - 14:45:52 CDT)
• Depth Cueing and dispdev none Oleg Stroganov (Thu Aug 07 2008 - 16:10:36 CDT)
  • Re: Depth Cueing and dispdev none John Stone (Mon Aug 11 2008 - 14:13:55 CDT)
    • Re: Depth Cueing and dispdev none Oleg Stroganov (Tue Aug 12 2008 - 18:03:29 CDT)
      • Re: Depth Cueing and dispdev none John Stone (Wed Aug 13 2008 - 09:56:44 CDT)
• VMD files to SDF max_at_liaad.up.pt (Thu Aug 07 2008 - 05:20:59 CDT)
  • Re: VMD files to SDF John Stone (Thu Aug 07 2008 - 12:52:48 CDT)
• Problems with Newcartoon representation Cesar Luis Avila (Wed Aug 06 2008 - 11:17:58 CDT)
  • Re: Problems with Newcartoon representation John Stone (Wed Aug 06 2008 - 11:33:28 CDT)
    • Re: Problems with Newcartoon representation John Stone (Wed Aug 06 2008 - 13:38:00 CDT)
      • Re: Problems with Newcartoon representation Cesar Luis Avila (Wed Aug 06 2008 - 14:28:00 CDT)
• NAMDENERGY crashing repeatedly Chandra Ramananjara (Tue Aug 05 2008 - 09:27:12 CDT)
  • Re: NAMDENERGY crashing repeatedly Peter Freddolino (Tue Aug 05 2008 - 16:26:52 CDT)
    • Re: NAMDENERGY crashing repeatedly Chandra Ramananjara (Tue Aug 05 2008 - 18:49:40 CDT)
• How to reduce memory usage of a script? David Poger (Mon Aug 04 2008 - 20:31:10 CDT)
  • Re: How to reduce memory usage of a script? John Stone (Mon Aug 04 2008 - 21:44:48 CDT)
    • Re: How to reduce memory usage of a script? David Poger (Tue Aug 05 2008 - 00:24:10 CDT)
      • Re: How to reduce memory usage of a script? John Stone (Tue Aug 05 2008 - 00:36:59 CDT)
      • Re: How to reduce memory usage of a script? David Poger (Tue Aug 05 2008 - 02:18:05 CDT)
• How to embed 3-D image into powerpoint Claw Isthelaw (Mon Aug 04 2008 - 15:15:33 CDT)
  • Re: How to embed 3-D image into powerpoint Axel Kohlmeyer (Mon Aug 04 2008 - 15:57:41 CDT)
  • Re: How to embed 3-D image into powerpoint John Stone (Tue Aug 05 2008 - 14:17:47 CDT)
• suggested video card for linux Burcin Temel (Mon Aug 04 2008 - 07:32:03 CDT)
  • Re: suggested video card for linux John Stone (Mon Aug 04 2008 - 11:24:47 CDT)
    • Re: suggested video card for linux Burcin Temel (Mon Aug 11 2008 - 12:13:06 CDT)
• SURF and broken surface Vivek Sharma (Fri Aug 01 2008 - 23:16:14 CDT)
  • Re: SURF and broken surface John Stone (Fri Aug 01 2008 - 23:28:04 CDT)
• ionize with VMD a TOP file rebeca_at_mmb.pcb.ub.es (Fri Aug 01 2008 - 07:14:40 CDT)
  • Re: ionize with VMD a TOP file Axel Kohlmeyer (Fri Aug 01 2008 - 09:28:58 CDT)
• vmd-rmsd-color-tool Bernhard Knapp (Fri Aug 01 2008 - 02:27:48 CDT)
  • Re: vmd-rmsd-color-tool Axel Kohlmeyer (Fri Aug 01 2008 - 09:27:35 CDT)
• Re: namdenergy and simulation with amber ff Alan (Fri Aug 01 2008 - 02:05:23 CDT)
  • Re: Re: namdenergy and simulation with amber ff Peter Freddolino (Fri Aug 01 2008 - 08:24:36 CDT)
    • Re: Re: namdenergy and simulation with amber ff Peter Freddolino (Mon Aug 04 2008 - 11:50:31 CDT)
• problem using pbc wrap: broken molecule Jianhui Tian (Thu Jul 31 2008 - 20:32:47 CDT)
  • Re: problem using pbc wrap: broken molecule Peter Freddolino (Fri Aug 01 2008 - 10:14:47 CDT)
    • Re: problem using pbc wrap: broken molecule Jianhui Tian (Fri Aug 01 2008 - 10:52:45 CDT)
      • Re: problem using pbc wrap: broken molecule Peter Freddolino (Fri Aug 01 2008 - 15:24:51 CDT)
      • Re: problem using pbc wrap: broken molecule Axel Kohlmeyer (Fri Aug 01 2008 - 16:29:59 CDT)
  • Re: problem using pbc wrap: broken molecule Axel Kohlmeyer (Fri Aug 01 2008 - 10:00:18 CDT)
• Gromacs reading: Why scaling?? Nicolas Bigaouette (Thu Jul 31 2008 - 18:33:26 CDT)
  • Re: Gromacs reading: Why scaling?? Axel Kohlmeyer (Thu Jul 31 2008 - 19:11:11 CDT)
    • Re: Gromacs reading: Why scaling?? Nicolas Bigaouette (Thu Jul 31 2008 - 19:21:12 CDT)
      • Re: Gromacs reading: Why scaling?? Axel Kohlmeyer (Thu Jul 31 2008 - 19:51:10 CDT)
  • Re: Gromacs reading: Why scaling?? Nicolas (Thu Jul 31 2008 - 19:32:16 CDT)
• VMD crasch Lixia Jin Day (Thu Jul 31 2008 - 15:58:28 CDT)
  • Re: VMD crasch Eric H. Lee (Thu Jul 31 2008 - 16:11:33 CDT)
    • Re: VMD crasch John Stone (Thu Jul 31 2008 - 17:00:22 CDT)
• VMD with amber rst7 and parm7 files Alan (Thu Jul 31 2008 - 03:26:33 CDT)
  • Re: VMD with amber rst7 and parm7 files Axel Kohlmeyer (Thu Jul 31 2008 - 09:02:29 CDT)
• Hot repl1ca w4tches from 2008 Villa Tory Mohr (Wed Jul 30 2008 - 21:06:33 CDT)
• How to disable automatic view rotations? Roman Petrenko (Wed Jul 30 2008 - 13:08:31 CDT)
  • Re: How to disable automatic view rotations? John Stone (Wed Jul 30 2008 - 14:34:15 CDT)
    • Re: How to disable automatic view rotations? Roman Petrenko (Wed Jul 30 2008 - 15:37:41 CDT)
      • Re: How to disable automatic view rotations? John Stone (Wed Jul 30 2008 - 15:50:09 CDT)
    • Re: How to disable automatic view rotations? John Stone (Wed Jul 30 2008 - 15:47:05 CDT)
• g(r) Rudra Banerjee (Wed Jul 30 2008 - 12:13:40 CDT)
  • Re: g(r) Axel Kohlmeyer (Wed Jul 30 2008 - 14:31:55 CDT)
    • Re: g(r) Rudra Banerjee (Thu Jul 31 2008 - 00:46:01 CDT)
      • Re: g(r) Axel Kohlmeyer (Thu Jul 31 2008 - 08:57:34 CDT)
• 3DConnexion SpaceNavigator in 1.8.7alpha30 on OS X Benjamin Bouvier (Wed Jul 30 2008 - 09:37:32 CDT)
  • Re: 3DConnexion SpaceNavigator in 1.8.7alpha30 on OS X John Stone (Wed Jul 30 2008 - 10:25:53 CDT)
    • Re: 3DConnexion SpaceNavigator in 1.8.7alpha30 on OS X Benjamin Bouvier (Wed Jul 30 2008 - 10:36:17 CDT)
      • Re: 3DConnexion SpaceNavigator in 1.8.7alpha30 on OS X John Stone (Wed Jul 30 2008 - 10:38:41 CDT)
  • Vmd on Fedora 9 Al-Ali, Hassan (Wed Jul 30 2008 - 11:43:28 CDT)
    • Re: Vmd on Fedora 9 Axel Kohlmeyer (Wed Jul 30 2008 - 12:18:11 CDT)
      • RE: Vmd on Fedora 9 Al-Ali, Hassan (Wed Jul 30 2008 - 15:12:38 CDT)
      • Re: Vmd on Fedora 9 Axel Kohlmeyer (Wed Jul 30 2008 - 15:24:29 CDT)
      • RE: Vmd on Fedora 9 Al-Ali, Hassan (Wed Jul 30 2008 - 19:16:09 CDT)
• tcl script problem with "atomselect' combined with "measure fit ...order" Loison Claire (Tue Jul 29 2008 - 09:16:36 CDT)
  • Re: tcl script problem with "atomselect' combined with "measure fit ...order" Roman Petrenko (Tue Jul 29 2008 - 15:26:13 CDT)
• Query Kaur, Tarandeep (Tue Jul 29 2008 - 07:55:49 CDT)
  • Re: Query John Stone (Tue Jul 29 2008 - 13:13:24 CDT)
• Multiseq refusing to load a structure due to taxonomy problem Robison, Keith (Tue Jul 29 2008 - 08:22:24 CDT)
  • Re: Multiseq refusing to load a structure due to taxonomy problem Elijah Roberts (Tue Jul 29 2008 - 13:17:04 CDT)
    • RE: Multiseq refusing to load a structure due to taxonomy problem Robison, Keith (Tue Jul 29 2008 - 13:32:19 CDT)
• periodic boundary conditions (yes, i read the tutorials) Roman Petrenko (Mon Jul 28 2008 - 19:46:09 CDT)
  • Re: periodic boundary conditions (yes, i read the tutorials) Roman Petrenko (Mon Jul 28 2008 - 19:50:12 CDT)
    • Re: Re: periodic boundary conditions (yes, i read the tutorials) Axel Kohlmeyer (Mon Jul 28 2008 - 20:44:41 CDT)
    • Re: Re: periodic boundary conditions (yes, i read the tutorials) Balazs Jojart (Tue Jul 29 2008 - 01:21:17 CDT)
      • Re: Re: periodic boundary conditions (yes, i read the tutorials) John Stone (Tue Jul 29 2008 - 13:22:57 CDT)
• solvating protein, fixed residue Rudra Banerjee (Mon Jul 28 2008 - 13:01:56 CDT)
  • Re: solvating protein, fixed residue Axel Kohlmeyer (Mon Jul 28 2008 - 13:52:42 CDT)
• water box...density!!! Rudra Banerjee (Mon Jul 28 2008 - 05:02:55 CDT)
  • Re: water box...density!!! Christopher Gillespie (Mon Jul 28 2008 - 09:43:47 CDT)
• solvation and box size Sue Legge (Mon Jul 28 2008 - 01:25:43 CDT)
  • Re: solvation and box size Roman Petrenko (Mon Jul 28 2008 - 06:52:08 CDT)
  • Re: solvation and box size Axel Kohlmeyer (Mon Jul 28 2008 - 06:30:07 CDT)
  • Re: solvation and box size Christopher Gillespie (Mon Jul 28 2008 - 07:33:37 CDT)
• translation/transformation Roman Petrenko (Sat Jul 26 2008 - 23:31:36 CDT)
  • Re: translation/transformation Schreiner Eduard (Sun Jul 27 2008 - 01:52:20 CDT)
    • Re: translation/transformation Schreiner Eduard (Sun Jul 27 2008 - 02:16:58 CDT)
      • Re: translation/transformation Roman Petrenko (Sun Jul 27 2008 - 04:09:35 CDT)
• how to create dityrosine links Roman Petrenko (Sat Jul 26 2008 - 17:47:52 CDT)
  • Re: how to create dityrosine links JC Gumbart (Sat Jul 26 2008 - 20:21:14 CDT)
    • Re: how to create dityrosine links Roman Petrenko (Sun Jul 27 2008 - 04:14:20 CDT)
• Python for OS X Hans Martin Senn (Fri Jul 25 2008 - 10:19:38 CDT)
  • Re: Python for OS X Axel Kohlmeyer (Sat Jul 26 2008 - 12:56:18 CDT)
  • Re: Python for OS X John Stone (Tue Jul 29 2008 - 14:09:57 CDT)
• question about using namdenergy.tcl with vmd -dispdev text -e *.tcl Margaret S. Cheung (Fri Jul 25 2008 - 08:38:20 CDT)
  • Re: question about using namdenergy.tcl with vmd -dispdev text -e *.tcl Peter Freddolino (Fri Jul 25 2008 - 17:31:16 CDT)
    • Re: question about using namdenergy.tcl with vmd -dispdev text -e *.tcl Margaret.Cheung_at_mail.uh.edu (Fri Jul 25 2008 - 18:41:40 CDT)
• Slow mail deliver for next day or so... John Stone (Fri Jul 25 2008 - 15:15:09 CDT)
• membrane plugin | lipid structures Jufang Shan (Fri Jul 25 2008 - 11:50:18 CDT)
  • RE: membrane plugin | lipid structures JC Gumbart (Sun Jul 27 2008 - 23:36:37 CDT)
• Get your w4tch now Villa Joan Winslow (Thu Jul 24 2008 - 04:40:10 CDT)
• questions relating to VolMapTool bo liu (Wed Jul 23 2008 - 02:35:18 CDT)
  • Re: questions relating to VolMapTool Axel Kohlmeyer (Wed Jul 23 2008 - 06:30:55 CDT)
• rdf for big systems Valeria Molinero (Tue Jul 22 2008 - 16:23:04 CDT)
  • Re: rdf for big systems Axel Kohlmeyer (Tue Jul 22 2008 - 17:06:30 CDT)
    • Re: rdf for big systems Valeria Molinero (Tue Jul 22 2008 - 18:58:25 CDT)
      • Re: rdf for big systems Axel Kohlmeyer (Tue Jul 22 2008 - 19:09:09 CDT)
      • Re: rdf for big systems John Stone (Thu Jul 31 2008 - 13:00:35 CDT)
    • Re: rdf for big systems John Stone (Wed Aug 06 2008 - 11:24:27 CDT)
      • Re: rdf for big systems Valeria Molinero (Mon Aug 11 2008 - 11:40:45 CDT)
      • Re: rdf for big systems John Stone (Mon Aug 11 2008 - 11:45:07 CDT)
      • Re: rdf for big systems Axel Kohlmeyer (Mon Aug 11 2008 - 13:35:11 CDT)
      • Re: rdf for big systems Valeria Molinero (Tue Aug 12 2008 - 18:35:42 CDT)
• vecsub command Katherine Parra (Tue Jul 22 2008 - 11:03:42 CDT)
  • Re: vecsub command Schreiner Eduard (Tue Jul 22 2008 - 11:40:13 CDT)
  • Re: vecsub command Axel Kohlmeyer (Tue Jul 22 2008 - 11:48:31 CDT)
• Selecting the sides of a benzene ring Ignacio Fernández Galván (Tue Jul 22 2008 - 06:30:21 CDT)
  • Re: Selecting the sides of a benzene ring Eduardo Cruz-Chu (Tue Jul 22 2008 - 11:21:42 CDT)
    • Re: Selecting the sides of a benzene ring Ignacio Fernández Galván (Wed Jul 23 2008 - 02:39:23 CDT)
      • Re: Selecting the sides of a benzene ring Axel Kohlmeyer (Wed Jul 23 2008 - 06:36:25 CDT)
      • Re: Selecting the sides of a benzene ring John Stone (Wed Jul 23 2008 - 09:15:18 CDT)
      • Re: Selecting the sides of a benzene ring Ignacio Fernández Galván (Wed Jul 30 2008 - 02:24:58 CDT)
      • Re: Selecting the sides of a benzene ring John Stone (Wed Jul 30 2008 - 10:31:50 CDT)
  • Re: Selecting the sides of a benzene ring Schreiner Eduard (Tue Jul 22 2008 - 11:01:39 CDT)
  • Re: Selecting the sides of a benzene ring Axel Kohlmeyer (Tue Jul 22 2008 - 11:45:54 CDT)
• Problem to find the number of frames of a trajectory David Poger (Mon Jul 21 2008 - 20:19:01 CDT)
  • Re: Problem to find the number of frames of a trajectory John Stone (Mon Jul 21 2008 - 23:50:56 CDT)
    • Re: Problem to find the number of frames of a trajectory David Poger (Mon Jul 21 2008 - 23:58:48 CDT)
      • Re: Problem to find the number of frames of a trajectory John Stone (Tue Jul 22 2008 - 00:50:30 CDT)
    • Re: Problem to find the number of frames of a trajectory John Stone (Tue Jul 22 2008 - 10:15:00 CDT)
• Periodic image and transformation matrix Cesar Avila (Mon Jul 21 2008 - 19:20:06 CDT)
  • Re: Periodic image and transformation matrix Axel Kohlmeyer (Mon Jul 21 2008 - 19:50:24 CDT)
• Missing angles and dihedrals Rene Prieto (Mon Jul 21 2008 - 18:25:52 CDT)
  • Re: Missing angles and dihedrals Schreiner Eduard (Mon Jul 21 2008 - 19:04:44 CDT)
  • Re: Missing angles and dihedrals Axel Kohlmeyer (Mon Jul 21 2008 - 19:31:48 CDT)
• You can s4ve 80% Villa Norberto Martinez (Mon Jul 21 2008 - 01:18:56 CDT)
• Selecting atoms that have real SASA greater than 0, Not using "Surface" Christopher Gillespie (Sun Jul 20 2008 - 16:28:04 CDT)
  • Re: Selecting atoms that have real SASA greater than 0, Not using "Surface" Schreiner Eduard (Sun Jul 20 2008 - 22:03:40 CDT)
  • Re: Selecting atoms that have real SASA greater than 0, Not using "Surface" John Stone (Mon Jul 21 2008 - 10:22:51 CDT)
    • Re: Selecting atoms that have real SASA greater than 0, Not using "Surface" Christopher Gillespie (Tue Jul 29 2008 - 18:39:14 CDT)
      • Re: Selecting atoms that have real SASA greater than 0, Not using "Surface" Axel Kohlmeyer (Tue Jul 29 2008 - 20:40:30 CDT)
• Parametrization of hydrogen sulfide Raul Araya (Fri Jul 18 2008 - 17:54:45 CDT)
• real coordinates Maria Sanchez Farran (Thu Jul 17 2008 - 21:40:46 CDT)
  • Re: real coordinates Axel Kohlmeyer (Fri Jul 18 2008 - 12:08:25 CDT)
• vmd MacOSX using dispdev Brian Kidd (Thu Jul 17 2008 - 18:08:03 CDT)
  • Re: vmd MacOSX using dispdev John Stone (Thu Jul 17 2008 - 22:12:18 CDT)
  • Re: vmd MacOSX using dispdev Kevin DeMarco (Fri Jul 18 2008 - 13:33:09 CDT)
  • Re: vmd MacOSX using dispdev Giovanni Bellesia (Fri Jul 18 2008 - 16:00:00 CDT)
• autopsf from console brosbam_at_berkeley.edu (Thu Jul 17 2008 - 12:23:21 CDT)
  • Re: autopsf from console Peter Freddolino (Thu Jul 17 2008 - 12:52:33 CDT)
• VMD Does not start on my MacBook Dr. Seth Olsen (Wed Jul 16 2008 - 21:15:57 CDT)
  • Re: VMD Does not start on my MacBook John Stone (Thu Jul 17 2008 - 15:39:55 CDT)
• Tetrahedral representation FX (Wed Jul 16 2008 - 17:20:22 CDT)
  • Re: Tetrahedral representation Axel Kohlmeyer (Wed Jul 16 2008 - 18:24:09 CDT)
    • Re: Tetrahedral representation FX (Thu Jul 17 2008 - 06:19:09 CDT)
      • Re: Tetrahedral representation John Stone (Thu Jul 17 2008 - 16:14:35 CDT)
  • Re: Tetrahedral representation John Stone (Wed Aug 13 2008 - 13:07:04 CDT)
  • Re: Tetrahedral representation John Stone (Wed Aug 13 2008 - 18:14:03 CDT)
• Error message in VMD console when I try to switch to Python mode. Katherine Parra (Wed Jul 16 2008 - 13:16:28 CDT)
  • Re: Error message in VMD console when I try to switch to Python mode. John Stone (Wed Jul 16 2008 - 13:28:55 CDT)
    • Re: Error message in VMD console when I try to switch to Python mode. Katherine Parra (Wed Jul 16 2008 - 14:06:06 CDT)
      • Re: Error message in VMD console when I try to switch to Python mode. John Stone (Wed Jul 16 2008 - 14:19:51 CDT)
      • Re: Error message in VMD console when I try to switch to Python mode. Katherine Parra (Thu Jul 17 2008 - 09:13:14 CDT)
      • Re: Error message in VMD console when I try to switch to Python mode. John Stone (Thu Jul 17 2008 - 09:21:29 CDT)
      • Re: Error message in VMD console when I try to switch to Python mode. Katherine Parra (Thu Jul 17 2008 - 09:30:22 CDT)
      • Re: Error message in VMD console when I try to switch to Python mode. John Stone (Thu Jul 17 2008 - 16:50:42 CDT)
      • Re: Error message in VMD console when I try to switch to Python mode. Katherine Parra (Tue Jul 22 2008 - 11:07:56 CDT)
• Creating a VMD movie from a Tcl script Samir Unni (Wed Jul 16 2008 - 09:32:37 CDT)
  • Re: Creating a VMD movie from a Tcl script John Stone (Thu Jul 17 2008 - 17:02:05 CDT)
    • Re: Creating a VMD movie from a Tcl script Samir Unni (Thu Jul 17 2008 - 21:18:24 CDT)
      • Re: Creating a VMD movie from a Tcl script John Stone (Thu Jul 17 2008 - 21:56:35 CDT)
    • Re: Creating a VMD movie from a Tcl script Samir Unni (Mon Jul 21 2008 - 07:57:59 CDT)
      • Re: Creating a VMD movie from a Tcl script John Stone (Mon Jul 21 2008 - 10:31:28 CDT)
      • Re: Creating a VMD movie from a Tcl script Samir Unni (Mon Jul 21 2008 - 11:35:51 CDT)
      • Re: Creating a VMD movie from a Tcl script John Stone (Mon Jul 21 2008 - 11:44:58 CDT)
      • Re: Creating a VMD movie from a Tcl script Samir Unni (Mon Jul 21 2008 - 12:16:53 CDT)
      • Re: Creating a VMD movie from a Tcl script Axel Kohlmeyer (Mon Jul 21 2008 - 14:13:59 CDT)
      • Re: Creating a VMD movie from a Tcl script Samir Unni (Mon Jul 21 2008 - 15:18:22 CDT)
      • Re: Creating a VMD movie from a Tcl script Axel Kohlmeyer (Mon Jul 21 2008 - 12:01:22 CDT)
      • Re: Creating a VMD movie from a Tcl script Samir Unni (Mon Jul 21 2008 - 12:22:20 CDT)
      • Re: Creating a VMD movie from a Tcl script John Stone (Mon Jul 21 2008 - 12:46:17 CDT)
      • Re: Creating a VMD movie from a Tcl script John Stone (Tue Jul 22 2008 - 13:51:41 CDT)
      • Re: Creating a VMD movie from a Tcl script Axel Kohlmeyer (Mon Jul 21 2008 - 14:09:46 CDT)
    • Re: Creating a VMD movie from a Tcl script Axel Kohlmeyer (Tue Jul 22 2008 - 15:59:42 CDT)
    • Re: Creating a VMD movie from a Tcl script John Stone (Tue Jul 22 2008 - 16:16:15 CDT)
• Problem writing trajectory to "crd" (Amber) format? Ian (Wed Jul 16 2008 - 04:43:24 CDT)
  • Re: Problem writing trajectory to "crd" (Amber) format? Axel Kohlmeyer (Wed Jul 16 2008 - 09:31:59 CDT)
  • Re: Problem writing trajectory to "crd" (Amber) format? John Stone (Tue Jul 22 2008 - 14:01:32 CDT)
• Fwd: memory overflow problem of Tcl scripting when dealing with trajectories(sorry for cross mailing...) bo liu (Wed Jul 16 2008 - 03:18:43 CDT)
  • Re: Fwd: memory overflow problem of Tcl scripting when dealing with trajectories(sorry for cross mailing...) Peter Freddolino (Wed Jul 16 2008 - 07:20:26 CDT)
• problem with correct visualization of residues L. Michel Espinoza-Fonseca (Tue Jul 15 2008 - 12:50:58 CDT)
  • Re: problem with correct visualization of residues John Stone (Tue Jul 15 2008 - 13:04:18 CDT)
    • Re: problem with correct visualization of residues L. Michel Espinoza-Fonseca (Tue Jul 15 2008 - 13:08:55 CDT)
      • Re: problem with correct visualization of residues Axel Kohlmeyer (Tue Jul 15 2008 - 13:39:06 CDT)
      • Re: problem with correct visualization of residues L. Michel Espinoza-Fonseca (Tue Jul 15 2008 - 13:44:13 CDT)
      • Re: problem with correct visualization of residues L. Michel Espinoza-Fonseca (Tue Jul 15 2008 - 13:53:54 CDT)
  • Re: problem with correct visualization of residues Axel Kohlmeyer (Tue Jul 15 2008 - 13:21:57 CDT)
• pick atom id script Abu Naser (Fri Jul 11 2008 - 06:07:05 CDT)
  • Re: pick atom id script Axel Kohlmeyer (Fri Jul 11 2008 - 09:37:49 CDT)
  • Re: pick atom id script David Tanner (Fri Jul 11 2008 - 09:32:53 CDT)
• purple bacteria and psfgen brosbam_at_berkeley.edu (Tue Jul 15 2008 - 12:37:30 CDT)
  • Re: purple bacteria and psfgen John Stone (Wed Jul 16 2008 - 02:50:49 CDT)
• Fwd: PDB Bonds versus "distance" bonds Sergey Ivanov (Tue Jul 15 2008 - 10:49:43 CDT)
  • Re: Fwd: PDB Bonds versus "distance" bonds Axel Kohlmeyer (Tue Jul 15 2008 - 11:20:53 CDT)
    • Re: Fwd: PDB Bonds versus "distance" bonds John Stone (Tue Jul 15 2008 - 13:00:42 CDT)
      • Re: Fwd: PDB Bonds versus "distance" bonds Sergey Ivanov (Thu Jul 17 2008 - 08:14:39 CDT)
      • Re: Fwd: PDB Bonds versus "distance" bonds John Stone (Thu Jul 17 2008 - 09:24:55 CDT)
• Visualizing History file from DL_POLY mahesh naalla (Mon Jul 14 2008 - 11:43:43 CDT)
  • Re: Visualizing History file from DL_POLY John Stone (Tue Jul 15 2008 - 10:39:33 CDT)
• tachyon rendering on black background figure Lixia Jin Day (Fri Jul 11 2008 - 13:06:30 CDT)
  • Re: tachyon rendering on black background figure John Stone (Wed Jul 16 2008 - 01:46:53 CDT)
    • Re: tachyon rendering on black background figure John Stone (Thu Jul 17 2008 - 16:31:06 CDT)
• QR factorization for structural alignment Dong Xu (Thu Jul 10 2008 - 17:30:39 CDT)
  • Re: QR factorization for structural alignment Leonardo Trabuco (Fri Jul 11 2008 - 01:51:51 CDT)
• (no subject) Abu Naser (Thu Jul 10 2008 - 10:43:17 CDT)
  • Re: Kirby Vandivort (Thu Jul 10 2008 - 11:05:33 CDT)
    • RE: Abu Naser (Thu Jul 10 2008 - 11:23:19 CDT)
• building an uncoming sulfide bridge Jim Pfaendtner (Thu Jul 10 2008 - 08:56:32 CDT)
  • Re: building an uncoming sulfide bridge JC Gumbart (Thu Jul 10 2008 - 11:17:46 CDT)
• contour plots Aaron.Oakley_at_csiro.au (Wed Jul 09 2008 - 22:50:54 CDT)
  • Re: contour plots Peter Freddolino (Thu Jul 10 2008 - 00:27:41 CDT)
  • Re: contour plots Giovanni Bellesia (Thu Jul 10 2008 - 01:09:36 CDT)
  • Re: contour plots Subramanian Vaitheeswaran (Thu Jul 10 2008 - 10:02:58 CDT)
  • Re: contour plots Alexandre A. Vakhrouchev (Mon Jul 21 2008 - 02:25:51 CDT)
• Inorganic Builder Plugin Renata KWIECIEN (Wed Jul 09 2008 - 02:56:17 CDT)
  • Re: Inorganic Builder Plugin Robert Brunner (Wed Jul 09 2008 - 10:38:27 CDT)
• I'm back.. John Stone (Tue Jul 08 2008 - 16:24:12 CDT)
• measure forces applied on VMD S.K. Ghosh (Mon Jul 07 2008 - 16:18:17 CDT)
  • Re: measure forces applied in VMD S.K. Ghosh (Tue Jul 08 2008 - 20:11:19 CDT)
    • Re: measure forces applied in VMD John Stone (Fri Jul 11 2008 - 10:48:11 CDT)
• trajectory to xyz file. Katherine Parra (Mon Jul 07 2008 - 13:16:30 CDT)
  • Re: trajectory to xyz file. Christopher Gillespie (Mon Jul 07 2008 - 14:44:12 CDT)
  • Re: trajectory to xyz file. Axel Kohlmeyer (Mon Jul 07 2008 - 15:11:30 CDT)
• Newbie Questions Paul Dennis Simonson (Sun Jul 06 2008 - 21:15:13 CDT)
  • Re: Newbie Questions Peter Freddolino (Sun Jul 06 2008 - 22:06:53 CDT)
• QR factorization for structural alignment Dong Xu (Sat Jul 05 2008 - 17:06:29 CDT)
• Maximum velocities Alejandro Ortega (Thu Jul 03 2008 - 16:03:13 CDT)
  • Re: Maximum velocities Eric H. Lee (Thu Jul 03 2008 - 16:17:54 CDT)
• Dihedrale angles in VMD Jorgen Simonsen (Thu Jul 03 2008 - 07:43:07 CDT)
  • Re: Dihedrale angles in VMD Axel Kohlmeyer (Thu Jul 03 2008 - 12:24:16 CDT)
• Loading Problem hirdesh kumar (Thu Jul 03 2008 - 06:27:44 CDT)
  • Re: Loading Problem Axel Kohlmeyer (Thu Jul 03 2008 - 12:28:18 CDT)
  • Re: Loading Problem John Stone (Fri Jul 11 2008 - 10:54:39 CDT)
• ResdueType and hydrophobicity scale Giovanni Bellesia (Wed Jul 02 2008 - 18:16:29 CDT)
  • Re: ResdueType and hydrophobicity scale John Stone (Wed Jul 16 2008 - 01:59:34 CDT)
    • Re: ResdueType and hydrophobicity scale Giovanni Bellesia (Wed Jul 16 2008 - 02:13:46 CDT)
      • Re: ResdueType and hydrophobicity scale John Stone (Wed Jul 16 2008 - 02:47:41 CDT)
      • Re: ResdueType and hydrophobicity scale Andrew Dalke (Wed Jul 16 2008 - 05:45:13 CDT)
• The maximal size which can be displayed by VMD? Fred (Rui FENG) (Wed Jul 02 2008 - 16:06:18 CDT)
  • Re: The maximal size which can be displayed by VMD? Axel Kohlmeyer (Wed Jul 02 2008 - 16:36:57 CDT)
    • Re: The maximal size which can be displayed by VMD? Fred (Rui FENG) (Wed Jul 02 2008 - 20:55:07 CDT)
• VMD Mutator, which side chain rotamer? S. Jamal Rahi (Wed Jul 02 2008 - 07:30:32 CDT)
  • Re: VMD Mutator, which side chain rotamer? Peter Freddolino (Wed Jul 02 2008 - 07:52:43 CDT)
• VMD Mutator, which side chain rotamer? S. Jamal Rahi (Wed Jul 02 2008 - 07:20:52 CDT)
• VMDMODULATERIBBON or sausage representation Tim Meyer (Tue Jul 01 2008 - 13:38:28 CDT)
  • Re: VMDMODULATERIBBON or sausage representation Axel Kohlmeyer (Tue Jul 01 2008 - 14:07:42 CDT)
• rmsd per residue Alberto Sergio Garay (Tue Jul 01 2008 - 05:36:46 CDT)
• rmsd per residue Michal Kolinski (Mon Jun 30 2008 - 10:19:40 CDT)
  • Re: rmsd per residue Eric H. Lee (Mon Jun 30 2008 - 14:42:18 CDT)
• Error using namdstat.tcl script S.K. Ghosh (Mon Jun 30 2008 - 10:51:20 CDT)
  • Re: Error using namdstat.tcl script Axel Kohlmeyer (Mon Jun 30 2008 - 11:42:26 CDT)
• Mac OSX crash with bus error/segmentation fault upon loading pdb/dcd James Irving (Sun Jun 29 2008 - 21:14:14 CDT)
  • Re: Mac OSX crash with bus error/segmentation fault upon loading pdb/dcd Axel Kohlmeyer (Mon Jun 30 2008 - 13:17:20 CDT)
    • Re: Mac OSX crash with bus error/segmentation fault upon loading pdb/dcd James Irving (Mon Jun 30 2008 - 18:10:13 CDT)
  • Re: Mac OSX crash with bus error/segmentation fault upon loading pdb/dcd Kevin DeMarco (Mon Jun 30 2008 - 18:50:24 CDT)
    • Re: Mac OSX crash with bus error/segmentation fault upon loading pdb/dcd James Irving (Mon Jun 30 2008 - 20:03:44 CDT)
• Problem of Movie Maker Plugin lei wang (Sat Jun 28 2008 - 05:41:29 CDT)
  • Re: Problem of Movie Maker Plugin Axel Kohlmeyer (Sat Jun 28 2008 - 11:19:02 CDT)
• mutate by D-residues... Yasser Almeida Hernández (Fri Jun 27 2008 - 16:45:00 CDT)
  • Re: mutate by D-residues... Axel Kohlmeyer (Fri Jun 27 2008 - 20:47:58 CDT)
• mutate by D-residues... Yasser Almeida Hernández (Fri Jun 27 2008 - 16:44:25 CDT)
• select cylindrical slab dimka (Fri Jun 27 2008 - 12:08:41 CDT)
  • Re: select cylindrical slab Peter Freddolino (Fri Jun 27 2008 - 12:34:01 CDT)
  • Re: select cylindrical slab Axel Kohlmeyer (Fri Jun 27 2008 - 12:51:26 CDT)
• Compiling from source on Mac OS X 10.5 Marylou Kunkle (Fri Jun 27 2008 - 11:12:37 CDT)
  • Re: Compiling from source on Mac OS X 10.5 Marylou Kunkle (Fri Jun 27 2008 - 13:29:37 CDT)
    • Re: Compiling from source on Mac OS X 10.5 Axel Kohlmeyer (Fri Jun 27 2008 - 14:23:44 CDT)
  • Re: Compiling from source on Mac OS X 10.5 Axel Kohlmeyer (Fri Jun 27 2008 - 13:54:36 CDT)
  • Re: Compiling from source on Mac OS X 10.5 John Stone (Thu Jul 17 2008 - 17:04:38 CDT)
• vmd shuts itself down A D (Thu Jun 26 2008 - 19:20:58 CDT)
  • Re: vmd shuts itself down Axel Kohlmeyer (Fri Jun 27 2008 - 09:23:12 CDT)
• how to make a movie of 2 or more trajectories parth singh (Thu Jun 26 2008 - 15:59:08 CDT)
  • Re: how to make a movie of 2 or more trajectories Axel Kohlmeyer (Fri Jun 27 2008 - 20:57:18 CDT)
• How to delete anwanted waters in a special area ? Leonhard Henkes (Wed Jun 25 2008 - 07:31:10 CDT)
  • Re: How to delete anwanted waters in a special area ? Axel Kohlmeyer (Wed Jun 25 2008 - 11:51:29 CDT)
• On solvate plugin S.K. Ghosh (Mon Jun 23 2008 - 07:22:06 CDT)
• On solvate plugin S.K. Ghosh (Mon Jun 23 2008 - 07:23:00 CDT)
  • Re: On solvate plugin Bhargava (Mon Jun 23 2008 - 09:14:05 CDT)
• How to visualize iron and chlorine properly. wangyong_at_dicp.ac.cn (Mon Jun 23 2008 - 19:44:35 CDT)
  • Re: How to visualize iron and chlorine properly. Axel Kohlmeyer (Mon Jun 23 2008 - 10:13:41 CDT)
  • Re: How to visualize iron and chlorine properly. Ignacio Fernández Galván (Tue Jun 24 2008 - 03:25:40 CDT)
• Inquiry concerning the plugin "Inorganic builder" Anneta Tzampazi (Mon Jun 23 2008 - 05:23:46 CDT)
  • Re: Inquiry concerning the plugin "Inorganic builder" Axel Kohlmeyer (Mon Jun 23 2008 - 10:11:04 CDT)
• how to export into postscript with MultiPlot in tcl mode? Sebastian Stolzenberg (Sun Jun 22 2008 - 19:01:53 CDT)
  • Re: how to export into postscript with MultiPlot in tcl mode? Axel Kohlmeyer (Mon Jun 23 2008 - 10:03:21 CDT)
  • Re: how to export into postscript with MultiPlot in tcl mode? Johannes Müllegger (Mon Jun 23 2008 - 11:23:24 CDT)
• vmd/vista32b/zalman M220 stereo? Michael Galloway (Fri Jun 20 2008 - 16:03:46 CDT)
  • Re: vmd/vista32b/zalman M220 stereo? Sabuj Pattanayek (Fri Jun 20 2008 - 19:18:59 CDT)
  • Re: vmd/vista32b/zalman M220 stereo? Michael Galloway (Mon Jun 23 2008 - 10:17:32 CDT)
    • Making a water-only sphere S.K. Ghosh (Mon Jun 23 2008 - 14:21:08 CDT)
• enantiomers Ed Lowe (Fri Jun 20 2008 - 08:38:06 CDT)
  • Re: enantiomers L. Michel Espinoza-Fonseca (Fri Jun 20 2008 - 09:10:31 CDT)
• Volume slice color scale Ignacio Fernández Galván (Fri Jun 20 2008 - 04:15:39 CDT)
• SpaceNavigator test builds (last note before I go offline!) John Stone (Fri Jun 20 2008 - 02:04:50 CDT)
• Away from VMD-L/email until July 8th... John Stone (Thu Jun 19 2008 - 19:50:06 CDT)
  • Re: Away from VMD-L/email until July 8th... Alexandre A. Vakhrouchev (Thu Jun 19 2008 - 21:09:17 CDT)
  • Re: Away from VMD-L/email until July 8th... daniel aguayo (Fri Jun 20 2008 - 16:27:34 CDT)
• Discrepancy between colours when coloured by timestep and Tachyon rendered Tim Carpenter (Thu Jun 19 2008 - 12:48:40 CDT)
  • Re: Discrepancy between colours when coloured by timestep and Tachyon rendered John Stone (Thu Jun 19 2008 - 13:02:04 CDT)
    • Re: Discrepancy between colours when coloured by timestep and Tachyon rendered John Stone (Thu Jun 19 2008 - 13:05:52 CDT)
      • Re: Discrepancy between colours when coloured by timestep and Tachyon rendered John Stone (Thu Jun 19 2008 - 13:25:49 CDT)
      • Re: Discrepancy between colours when coloured by timestep and Tachyon rendered Tim Carpenter (Thu Jun 19 2008 - 13:52:30 CDT)
      • Re: Discrepancy between colours when coloured by timestep and Tachyon rendered John Stone (Thu Jun 19 2008 - 13:54:40 CDT)
• Print and save DLPOLY HISTORY plots mahesh naalla (Thu Jun 19 2008 - 12:15:50 CDT)
  • Re: Print and save DLPOLY HISTORY plots John Stone (Thu Jun 19 2008 - 13:05:02 CDT)
    • Re: Print and save DLPOLY HISTORY plots mahesh naalla (Thu Jun 19 2008 - 14:08:17 CDT)
      • Re: Print and save DLPOLY HISTORY plots John Stone (Thu Jun 19 2008 - 23:48:06 CDT)
• displaying hydrogen bonds when hydrogens are not available Y. U. Sasidhar (Thu Jun 19 2008 - 07:34:23 CDT)
  • Re: displaying hydrogen bonds when hydrogens are not available Axel Kohlmeyer (Thu Jun 19 2008 - 09:31:53 CDT)
  • Re: displaying hydrogen bonds when hydrogens are not available Eric H. Lee (Thu Jun 19 2008 - 09:46:51 CDT)
• Labelling Coordinates (not Atoms) Anthony Ivetac (Wed Jun 18 2008 - 17:52:09 CDT)
  • Re: Labelling Coordinates (not Atoms) Axel Kohlmeyer (Wed Jun 18 2008 - 18:43:57 CDT)
  • Re: Labelling Coordinates (not Atoms) Anthony Ivetac (Wed Jun 18 2008 - 21:32:03 CDT)
• IED Vahdati N. (Wed Jun 18 2008 - 10:26:37 CDT)
• PSF works in NAMD but not in VMD Esben A. Gad (Wed Jun 18 2008 - 03:17:04 CDT)
  • Re: PSF works in NAMD but not in VMD Peter Freddolino (Wed Jun 18 2008 - 06:53:50 CDT)
  • Re: PSF works in NAMD but not in VMD Esben A. Gad (Fri Jun 20 2008 - 06:05:22 CDT)
    • Re: Re: PSF works in NAMD but not in VMD Peter Freddolino (Fri Jun 20 2008 - 08:04:24 CDT)
    • Re: Re: PSF works in NAMD but not in VMD Axel Kohlmeyer (Fri Jun 20 2008 - 09:57:37 CDT)
    • Re: Re: PSF works in NAMD but not in VMD Esben A. Gad (Mon Jun 23 2008 - 07:20:08 CDT)
      • Re: Re: Re: PSF works in NAMD but not in VMD Axel Kohlmeyer (Mon Jun 23 2008 - 10:18:33 CDT)
      • Re: Re: Re: PSF works in NAMD but not in VMD Peter Freddolino (Tue Jun 24 2008 - 07:19:00 CDT)
    • Re: Re: PSF works in NAMD but not in VMD Esben A. Gad (Tue Jun 24 2008 - 03:08:07 CDT)
    • Re: Re: PSF works in NAMD but not in VMD Esben A. Gad (Wed Jun 25 2008 - 06:42:53 CDT)
• specify a rtf file when generating a psf file. Nicolas Sapay (Tue Jun 17 2008 - 13:46:22 CDT)
  • Re: specify a rtf file when generating a psf file. Peter Freddolino (Tue Jun 17 2008 - 14:32:13 CDT)
  • Re: specify a rtf file when generating a psf file. Axel Kohlmeyer (Tue Jun 17 2008 - 14:50:55 CDT)
    • Re: specify a rtf file when generating a psf file. Nicolas Sapay (Tue Jun 17 2008 - 15:28:34 CDT)
• render "color by volume" Gerald Mathias (Tue Jun 17 2008 - 13:27:15 CDT)
  • Re: render "color by volume" Axel Kohlmeyer (Tue Jun 17 2008 - 14:51:28 CDT)
  • Re: render "color by volume" Nicolas Sapay (Tue Jun 17 2008 - 17:11:45 CDT)
    • Re: render "color by volume" Axel Kohlmeyer (Tue Jun 17 2008 - 18:34:28 CDT)
• opening gromacs .gro file gives warning messsage and does not display the molecule jake wernik (Mon Jun 16 2008 - 20:19:52 CDT)
  • Re: opening gromacs .gro file gives warning messsage and does not display the molecule Axel Kohlmeyer (Tue Jun 17 2008 - 09:11:03 CDT)
  • Re: opening gromacs .gro file gives warning messsage and does not display the molecule Nicolas Sapay (Tue Jun 17 2008 - 13:51:36 CDT)
• Drawing a line between two atoms Marx Gomes Van der Linden (Mon Jun 16 2008 - 17:10:12 CDT)
• Question: Too many arguments Leonhard Henkes (Mon Jun 16 2008 - 08:24:15 CDT)
  • Re: Question: Too many arguments Axel Kohlmeyer (Mon Jun 16 2008 - 09:45:36 CDT)
• problem with namdstats.tcl sudipta sinha (Sun Jun 15 2008 - 01:51:11 CDT)
• Electrostatic - PMEpot daniel aguayo (Fri Jun 13 2008 - 12:23:22 CDT)
  • Re: Electrostatic - PMEpot Leonardo Trabuco (Fri Jun 13 2008 - 13:13:00 CDT)
    • Re: Electrostatic - PMEpot daniel aguayo (Mon Jun 16 2008 - 09:02:08 CDT)
• About occupancy volume maps Ignacio Fernández Galván (Fri Jun 13 2008 - 05:40:17 CDT)
  • Re: About occupancy volume maps John Stone (Thu Jun 19 2008 - 00:38:25 CDT)
    • Re: About occupancy volume maps Ignacio Fernández Galván (Thu Jun 19 2008 - 02:43:11 CDT)
      • Re: About occupancy volume maps Axel Kohlmeyer (Thu Jun 19 2008 - 05:20:24 CDT)
• User defined charges with PMEpot Nicolas Sapay (Thu Jun 12 2008 - 18:24:57 CDT)
  • Re: User defined charges with PMEpot Axel Kohlmeyer (Thu Jun 12 2008 - 22:24:15 CDT)
    • Re: User defined charges with PMEpot Nicolas (Thu Jun 12 2008 - 23:08:24 CDT)
      • Re: User defined charges with PMEpot Axel Kohlmeyer (Fri Jun 13 2008 - 07:34:42 CDT)
• Re: vmd-l digest V1 #1086 Ibrahim Moustafa (Wed Jun 11 2008 - 11:27:48 CDT)
• import QM single point calculation Tim Werner (Wed Jun 11 2008 - 04:27:02 CDT)
• problem loading trajectory in VMD under windows XP Aaron.Oakley_at_csiro.au (Tue Jun 10 2008 - 18:41:24 CDT)
  • Re: problem loading trajectory in VMD under windows XP Axel Kohlmeyer (Tue Jun 10 2008 - 20:21:24 CDT)
  • Re: problem loading trajectory in VMD under windows XP John Stone (Wed Jun 11 2008 - 01:37:58 CDT)
• Spring quality watches offer Estela Gibbs (Tue Jun 10 2008 - 18:50:16 CDT)
• Image rendering using pov-ray Dong Xu (Mon Jun 09 2008 - 20:35:55 CDT)
  • Re: Image rendering using pov-ray Axel Kohlmeyer (Mon Jun 09 2008 - 21:30:35 CDT)
  • Re: Image rendering using pov-ray Axel Kohlmeyer (Mon Jun 09 2008 - 21:34:57 CDT)
    • Re: Image rendering using pov-ray Dong Xu (Thu Jun 12 2008 - 21:31:03 CDT)
      • Re: Image rendering using pov-ray John Stone (Thu Jun 12 2008 - 22:04:47 CDT)
      • Re: Image rendering using pov-ray Dong Xu (Fri Jun 13 2008 - 14:35:45 CDT)
      • Re: Image rendering using pov-ray John Stone (Fri Jun 13 2008 - 14:48:24 CDT)
• psf generation of circular proteins Rabab Toubar (Sun Jun 08 2008 - 09:36:00 CDT)
  • IED on MacOSX 10.3.9 Peter Jones (Tue Jun 10 2008 - 05:54:54 CDT)
    • Re: IED on MacOSX 10.3.9 Axel Kohlmeyer (Tue Jun 10 2008 - 07:03:30 CDT)
  • Re: psf generation of circular proteins John Stone (Wed Jun 11 2008 - 10:18:02 CDT)
    • Re: psf generation of circular proteins Rabab Toubar (Wed Jun 11 2008 - 13:30:05 CDT)
      • Re: psf generation of circular proteins John Stone (Thu Jun 12 2008 - 00:22:46 CDT)
• Dipole moment? Alexandre A. Vakhrouchev (Sat Jun 07 2008 - 07:21:55 CDT)
  • Re: Dipole moment? Axel Kohlmeyer (Sat Jun 07 2008 - 12:47:19 CDT)
    • Re: Dipole moment? Alexandre A. Vakhrouchev (Sat Jun 07 2008 - 13:25:40 CDT)
    • Re: Dipole moment? Ignacio Fernández Galván (Tue Jul 15 2008 - 09:52:07 CDT)
• Total list of Tcl features Alexandre A. Vakhrouchev (Sat Jun 07 2008 - 00:15:05 CDT)
  • Re: Total list of Tcl features John Stone (Sat Jun 07 2008 - 00:35:26 CDT)
    • Re: Total list of Tcl features Alexandre A. Vakhrouchev (Sat Jun 07 2008 - 01:14:37 CDT)
  • Re: Total list of Tcl features Axel Kohlmeyer (Sat Jun 07 2008 - 09:41:05 CDT)
    • Re: Total list of Tcl features Alexandre A. Vakhrouchev (Sat Jun 07 2008 - 10:31:31 CDT)
      • Re: Total list of Tcl features Axel Kohlmeyer (Sat Jun 07 2008 - 10:21:27 CDT)
• Watches for him, her and you Penny Boyle (Fri Jun 06 2008 - 19:47:03 CDT)
• Solvation Katherine Parra (Fri Jun 06 2008 - 08:56:31 CDT)
  • Re: Solvation Axel Kohlmeyer (Fri Jun 06 2008 - 09:04:27 CDT)
• Solvation of a molecule Katherine Parra (Thu Jun 05 2008 - 08:15:41 CDT)
• speed of movie gurpreet singh (Thu Jun 05 2008 - 05:40:55 CDT)
  • Re: speed of movie Mario Valle (Thu Jun 05 2008 - 07:01:28 CDT)
  • Re: speed of movie Axel Kohlmeyer (Sun Jul 13 2008 - 15:49:02 CDT)
• Long file paths in Mac OS 10.5.3 Kevin DeMarco (Wed Jun 04 2008 - 15:24:51 CDT)
  • Re: Long file paths in Mac OS 10.5.3 John Stone (Wed Jun 04 2008 - 16:27:03 CDT)
    • Re: Long file paths in Mac OS 10.5.3 Kevin DeMarco (Wed Jun 04 2008 - 16:43:32 CDT)
      • Re: Long file paths in Mac OS 10.5.3 John Stone (Wed Jun 04 2008 - 16:52:10 CDT)
  • Re: Long file paths in Mac OS 10.5.3 Axel Kohlmeyer (Wed Jun 04 2008 - 16:17:25 CDT)
    • Re: Long file paths in Mac OS 10.5.3 Kevin DeMarco (Wed Jun 04 2008 - 18:30:19 CDT)
• psf file Katherine Parra (Tue Jun 03 2008 - 11:47:43 CDT)
  • Re: psf file JC Gumbart (Tue Jun 03 2008 - 15:24:36 CDT)
• Batch mode on Mac OS 10.5.3 Benjamin Hall (Tue Jun 03 2008 - 05:16:52 CDT)
  • Re: Batch mode on Mac OS 10.5.3 John Stone (Tue Jun 03 2008 - 11:10:18 CDT)
  • Re: Batch mode on Mac OS 10.5.3 Dan Wright (Tue Jun 03 2008 - 11:24:22 CDT)
    • Re: Batch mode on Mac OS 10.5.3 Benjamin Hall (Wed Jun 04 2008 - 08:26:23 CDT)
  • Re: Batch mode on Mac OS 10.5.3 Robert Brunner (Tue Jun 03 2008 - 12:34:02 CDT)
• Create atom selection from list of integers Claw Isthelaw (Mon Jun 02 2008 - 11:01:49 CDT)
  • Re: Create atom selection from list of integers Axel Kohlmeyer (Mon Jun 02 2008 - 11:08:16 CDT)
  • Re: Create atom selection from list of integers Leonardo Trabuco (Mon Jun 02 2008 - 11:15:58 CDT)
    • Re: Create atom selection from list of integers Leonardo Trabuco (Mon Jun 02 2008 - 11:51:09 CDT)
  • Re: Create atom selection from list of integers Joaquim Rui Rodrigues (Mon Jun 02 2008 - 12:10:28 CDT)
    • RE: Create atom selection from list of integers Claw Isthelaw (Mon Jun 02 2008 - 13:10:12 CDT)
• Postdoc position available... John Stone (Sat May 31 2008 - 01:06:59 CDT)
• measure hbonds problem politr_at_huji.ac.il (Fri May 30 2008 - 10:59:28 CDT)
  • Re: measure hbonds problem Peter Freddolino (Fri May 30 2008 - 15:00:52 CDT)
    • Re: measure hbonds problem politr_at_huji.ac.il (Sun Jun 01 2008 - 06:27:48 CDT)
• hydrogen bonds politr_at_huji.ac.il (Fri May 30 2008 - 06:05:12 CDT)
• silly rmsd script doesn' t work ... andrea spitaleri (Fri May 30 2008 - 07:17:16 CDT)
  • Re: silly rmsd script doesn' t work ... Peter Freddolino (Fri May 30 2008 - 08:44:00 CDT)
  • Re: silly rmsd script doesn' t work ... Axel Kohlmeyer (Fri May 30 2008 - 07:49:45 CDT)
    • Re: silly rmsd script doesn' t work ... andrea spitaleri (Fri May 30 2008 - 08:28:40 CDT)
• preriodic box problem Matthieu Chavent (Fri May 30 2008 - 04:12:31 CDT)
  • Re: preriodic box problem L. Michel Espinoza-Fonseca (Fri May 30 2008 - 05:20:24 CDT)
    • Re: preriodic box problem Matthieu Chavent (Fri May 30 2008 - 10:40:00 CDT)
      • Re: preriodic box problem Olaf Lenz (Sat May 31 2008 - 06:20:06 CDT)
• Exceeded maximum number of bonds Demian Riccardi (Thu May 29 2008 - 13:18:09 CDT)
  • Re: Exceeded maximum number of bonds Axel Kohlmeyer (Thu May 29 2008 - 13:54:24 CDT)
• vmd_init Paul Schlesinger (Wed May 28 2008 - 18:25:38 CDT)
  • Re: vmd_init John Stone (Fri Jun 20 2008 - 00:11:41 CDT)
• Re: [lammps-users] MDAnalysis (slightly OT) Axel Kohlmeyer (Tue May 27 2008 - 12:54:41 CDT)
• errors with using surf and MSMS representations Yinglong Miao (Tue May 27 2008 - 14:53:54 CDT)
  • Re: errors with using surf and MSMS representations John Stone (Tue May 27 2008 - 15:12:35 CDT)
    • Re: errors with using surf and MSMS representations John Stone (Tue May 27 2008 - 16:13:41 CDT)
      • Re: errors with using surf and MSMS representations Yinglong Miao (Tue May 27 2008 - 17:11:54 CDT)
• IMD per TCL Stephan Frickenhaus (Tue May 27 2008 - 02:06:34 CDT)
  • Re: IMD per TCL Axel Kohlmeyer (Tue May 27 2008 - 04:39:51 CDT)
  • Re: IMD per TCL John Stone (Fri Jun 20 2008 - 00:15:33 CDT)
• Label on Movie Wei Huang (Mon May 26 2008 - 10:26:30 CDT)
  • Re: Label on Movie Axel Kohlmeyer (Mon May 26 2008 - 12:02:08 CDT)
    • Re: Label on Movie Wei Huang (Mon May 26 2008 - 14:21:22 CDT)
      • Re: Label on Movie Axel Kohlmeyer (Mon May 26 2008 - 14:06:52 CDT)
• mass weighted rms fit Dong Xu (Sun May 25 2008 - 11:14:47 CDT)
  • Re: mass weighted rms fit Axel Kohlmeyer (Sun May 25 2008 - 11:20:56 CDT)
• How to discard certain atoms politr_at_huji.ac.il (Sun May 25 2008 - 05:50:43 CDT)
  • Re: How to discard certain atoms Axel Kohlmeyer (Sun May 25 2008 - 07:59:23 CDT)
• Measure gofr with large DCD files (Possibly use bigdcd ???) Christopher Gillespie (Fri May 23 2008 - 18:43:22 CDT)
  • Re: Measure gofr with large DCD files (Possibly use bigdcd ???) Axel Kohlmeyer (Fri May 23 2008 - 18:59:33 CDT)
• Movies using Cygwin's ImageMagick? Gustavo Seabra (Thu May 22 2008 - 09:18:45 CDT)
  • Re: Movies using Cygwin's ImageMagick? Axel Kohlmeyer (Thu May 22 2008 - 09:33:30 CDT)
• Crystal water INPE (Ingrid Viveka Pettersson) (Thu May 22 2008 - 04:32:59 CDT)
  • Re: Crystal water Axel Kohlmeyer (Thu May 22 2008 - 05:23:24 CDT)
• scale trajectory coords Peter Jones (Wed May 21 2008 - 22:28:35 CDT)
  • Re: scale trajectory coords Axel Kohlmeyer (Wed May 21 2008 - 22:58:01 CDT)
• (no subject) paquotau_at_loria.fr (Wed May 21 2008 - 08:12:51 CDT)
  • Re: your mail Axel Kohlmeyer (Wed May 21 2008 - 09:17:12 CDT)
• Several molecules paquotau_at_loria.fr (Tue May 20 2008 - 10:17:18 CDT)
  • Re: Several molecules John Stone (Tue May 20 2008 - 10:21:03 CDT)
• Using NAMD Energy Plugin S.K. Ghosh (Tue May 20 2008 - 07:18:35 CDT)
  • Re: Using NAMD Energy Plugin Peter Freddolino (Tue May 20 2008 - 08:12:50 CDT)
    • save NAMD plot as a picture S.K. Ghosh (Thu Jun 19 2008 - 14:00:30 CDT)
      • Re: save NAMD plot as a picture John Stone (Thu Jun 19 2008 - 23:51:06 CDT)
  • Re: Using NAMD Energy Plugin Axel Kohlmeyer (Tue May 20 2008 - 07:42:39 CDT)
• plot residues without hydrogen atoms ABEL Stephane 175950 (Tue May 20 2008 - 07:02:41 CDT)
  • Re: plot residues without hydrogen atoms Axel Kohlmeyer (Tue May 20 2008 - 07:40:19 CDT)
  • Re: plot residues without hydrogen atoms Peter Freddolino (Tue May 20 2008 - 08:13:32 CDT)
    • RE : plot residues without hydrogen atoms ABEL Stephane 175950 (Tue May 20 2008 - 11:11:46 CDT)
• Re: [vmd_chcwaaa@yahoo.com.cn: about measure dihedral angle] Jan Saam (Fri May 16 2008 - 18:15:51 CDT)
• Color of bond betwen atoms with different colors Alberto Torres (Fri May 16 2008 - 15:35:40 CDT)
  • Re: Color of bond betwen atoms with different colors Axel Kohlmeyer (Fri May 16 2008 - 16:35:50 CDT)
• Slow tcl/tk script for trajectory analysis Alberto Sergio Garay (Fri May 16 2008 - 14:34:40 CDT)
  • Re: Slow tcl/tk script for trajectory analysis John Stone (Fri May 16 2008 - 14:45:49 CDT)
  • Re: Slow tcl/tk script for trajectory analysis Axel Kohlmeyer (Fri May 16 2008 - 14:46:11 CDT)
  • Re: Slow tcl/tk script for trajectory analysis Jian Zou (Fri May 16 2008 - 15:23:46 CDT)
• Draw in a new layer problems Nuno Sousa Cerqueira (Fri May 16 2008 - 08:36:58 CDT)
  • Re: Draw in a new layer problems Peter Freddolino (Fri May 16 2008 - 09:09:43 CDT)
  • Re: Draw in a new layer problems Axel Kohlmeyer (Fri May 16 2008 - 10:48:12 CDT)
• How to calculate the volume of a molecule using vmd? Khaled Barakat (Thu May 15 2008 - 22:17:36 CDT)
  • Re: How to calculate the volume of a molecule using vmd? John Stone (Thu May 15 2008 - 23:39:45 CDT)
• Truncated Octahedron for VMD and NAMD simulation Yinglong Miao (Thu May 15 2008 - 14:31:48 CDT)
  • Re: namd-l: Truncated Octahedron for VMD and NAMD simulation George Madalin Giambasu (Thu May 15 2008 - 15:23:51 CDT)
    • Re: Re: namd-l: Truncated Octahedron for VMD and NAMD simulation Vlad Cojocaru (Fri May 16 2008 - 03:29:41 CDT)
      • Re: Re: namd-l: Truncated Octahedron for VMD and NAMD simulation Yinglong Miao (Fri May 16 2008 - 09:42:20 CDT)
      • Re: Re: namd-l: Truncated Octahedron for VMD and NAMDsimulation Bishop, Thomas C (Fri May 16 2008 - 13:39:16 CDT)
• Info regarding residue based CG simulation anshudx_at_indiatimes.com (Thu May 15 2008 - 13:04:11 CDT)
• Re: namd-l: Energy plot script Subramanian Vaitheeswaran (Thu May 15 2008 - 07:28:20 CDT)
  • Re: namd-l: Energy plot script bo liu (Thu May 15 2008 - 13:00:23 CDT)
• Energy plot script Alexandre A. Vakhrouchev (Wed May 14 2008 - 22:11:19 CDT)
• Individual atoms trajectory Alexandre A. Vakhrouchev (Wed May 14 2008 - 00:34:38 CDT)
  • Re: Individual atoms trajectory John Stone (Thu May 15 2008 - 23:42:40 CDT)
    • Re: Individual atoms trajectory Alexandre A. Vakhrouchev (Fri May 16 2008 - 01:08:22 CDT)
      • Re: Individual atoms trajectory John Stone (Fri May 16 2008 - 01:33:59 CDT)
      • Re: Individual atoms trajectory Alexandre A. Vakhrouchev (Fri May 16 2008 - 02:08:59 CDT)
• membrane builder ffavela_at_fis.cinvestav.mx (Tue May 13 2008 - 17:30:57 CDT)
  • Re: membrane builder Axel Kohlmeyer (Tue May 13 2008 - 17:31:47 CDT)
• Bond lengths from PDB and PSF Andrew Huang (Mon May 12 2008 - 16:36:18 CDT)
  • Re: Bond lengths from PDB and PSF Axel Kohlmeyer (Mon May 12 2008 - 17:32:55 CDT)
• coloring according to charge of residues OZGE ENGIN (Mon May 12 2008 - 10:05:33 CDT)
  • Re: coloring according to charge of residues Giovanni Bellesia (Mon May 12 2008 - 10:58:45 CDT)
• 'within' command in VMD Neelanjana Sengupta (Sun May 11 2008 - 02:04:57 CDT)
  • Re: 'within' command in VMD Axel Kohlmeyer (Sun May 11 2008 - 03:35:53 CDT)
  • Re: 'within' command in VMD John Stone (Sun May 11 2008 - 10:54:53 CDT)
    • Re: 'within' command in VMD Neelanjana Sengupta (Sun May 11 2008 - 12:35:35 CDT)
      • Re: 'within' command in VMD John Stone (Sun May 11 2008 - 13:12:48 CDT)
      • Re: 'within' command in VMD Axel Kohlmeyer (Sun May 11 2008 - 13:22:18 CDT)
• Recompile VMD with larger index types Alexandre A. Vakhrouchev (Sat May 10 2008 - 07:36:43 CDT)
  • Re: Recompile VMD with larger index types John Stone (Sat May 10 2008 - 10:24:43 CDT)
    • Re: Recompile VMD with larger index types Axel Kohlmeyer (Sat May 10 2008 - 10:19:36 CDT)
      • NewCartoons / STRIDE problem Samuel Coulbourn Flores 花山 (Sat May 10 2008 - 18:16:21 CDT)
      • Re: NewCartoons / STRIDE problem John Stone (Fri May 16 2008 - 14:55:56 CDT)
      • Re: NewCartoons / STRIDE problem Samuel Coulbourn Flores 花山 (Fri May 16 2008 - 16:06:17 CDT)
      • Re: Recompile VMD with larger index types John Stone (Sun May 11 2008 - 00:48:35 CDT)
      • Re: Recompile VMD with larger index types Alexandre A. Vakhrouchev (Sun May 11 2008 - 11:20:47 CDT)
      • Re: Recompile VMD with larger index types Axel Kohlmeyer (Sun May 11 2008 - 11:18:17 CDT)
• Charge State Confusion MIke S (Thu May 08 2008 - 22:17:33 CDT)
  • Re: Charge State Confusion John Stone (Thu May 08 2008 - 22:55:36 CDT)
    • Re: Charge State Confusion MIke S (Fri May 09 2008 - 00:45:39 CDT)
• about measure dihedral angle cong chen (Thu May 08 2008 - 20:53:08 CDT)
• measure sasa gives different results on different platforms Jufang Shan (Wed May 07 2008 - 15:52:47 CDT)
  • Re: measure sasa gives different results on different platforms John Stone (Wed May 07 2008 - 16:59:55 CDT)
    • Re: measure sasa gives different results on different platforms Jufang Shan (Wed May 07 2008 - 23:04:19 CDT)
      • Re: measure sasa gives different results on different platforms John Stone (Wed May 07 2008 - 23:08:22 CDT)
      • Re: measure sasa gives different results on different platforms Jufang Shan (Thu May 08 2008 - 11:26:38 CDT)
      • Re: measure sasa gives different results on different platforms John Stone (Thu May 08 2008 - 11:39:07 CDT)
• bigdcd v2.0 testers needed... Axel Kohlmeyer (Wed May 07 2008 - 15:21:47 CDT)
• running vmd as pbs job zhenlong li (Tue May 06 2008 - 14:40:44 CDT)
  • Re: running vmd as pbs job John Stone (Fri May 09 2008 - 02:29:22 CDT)
    • Re: running vmd as pbs job zhenlong li (Fri May 09 2008 - 08:34:41 CDT)
• Writepdb with Solvation Box Alejandro Ortega (Tue May 06 2008 - 12:50:23 CDT)
  • Re: Writepdb with Solvation Box Axel Kohlmeyer (Tue May 06 2008 - 13:25:34 CDT)
• NAMDENERGY: function of 'cutoff' parameter when -pme option is enabled Ghalib Bello (Mon May 05 2008 - 23:02:45 CDT)
  • Re: namd-l: NAMDENERGY: function of 'cutoff' parameter when -pme option is enabled Peter Freddolino (Tue May 06 2008 - 00:37:54 CDT)
• question related to rmsd snoze pa (Mon May 05 2008 - 15:03:07 CDT)
  • Re: namd-l: question related to rmsd JC Gumbart (Mon May 05 2008 - 16:19:47 CDT)
• Vmd too slow on Suse10.x cgji (Mon May 05 2008 - 08:20:47 CDT)
  • Re: Vmd too slow on Suse10.x Olaf Lenz (Mon May 05 2008 - 09:01:51 CDT)
  • Re: Vmd too slow on Suse10.x John Stone (Mon May 05 2008 - 09:42:31 CDT)
• The discreet replica store Greta Bush (Mon May 05 2008 - 01:28:30 CDT)
• about writepdb cong chen (Mon May 05 2008 - 00:08:53 CDT)
  • RE: about writepdb JC Gumbart (Mon May 05 2008 - 00:18:00 CDT)
• Get one of these awesome replicas Rolando Carlson (Sun May 04 2008 - 12:10:27 CDT)
• Replica watches make great gifts Edwina Grove (Sun May 04 2008 - 01:24:11 CDT)
• The affordable watch alternative Ariel Mitchell (Fri May 02 2008 - 20:35:12 CDT)
• a common list problem Thomas C. Bishop (Fri May 02 2008 - 10:28:30 CDT)
  • Re: a common list problem John Stone (Fri May 02 2008 - 10:39:04 CDT)
• Get one of these awesome replicas Melanie Mcmahon (Fri May 02 2008 - 01:05:03 CDT)
• Rendering electrostatic surface potentials using Tachyon Jason Winget (Thu May 01 2008 - 15:39:31 CDT)
  • Re: Rendering electrostatic surface potentials using Tachyon John Stone (Thu May 01 2008 - 21:56:13 CDT)
• One of a kind replicas Richard Stone (Thu May 01 2008 - 11:18:31 CDT)
• Watches made to impress Clinton Sylvester (Thu May 01 2008 - 10:40:03 CDT)
• Measuring fit exclusively in 1 plane Benjamin Hall (Thu May 01 2008 - 04:59:04 CDT)
  • Re: Measuring fit exclusively in 1 plane John Stone (Thu May 01 2008 - 21:54:14 CDT)
• Why get an original watch? Leticia Larkin (Wed Apr 30 2008 - 20:14:01 CDT)
• Impressive Glashutte timepieces! Lorena Shipley (Wed Apr 30 2008 - 08:35:35 CDT)
• Spring quality watches offer Bertie Earl (Tue Apr 29 2008 - 19:30:10 CDT)
• creating psf from pgn S.K. Ghosh (Tue Apr 29 2008 - 13:42:45 CDT)
  • Re: creating psf from pgn John Stone (Tue Apr 29 2008 - 16:09:24 CDT)
• Beginner with cyclic peptide Gao, Fan, Ph.D. (Tue Apr 29 2008 - 11:25:34 CDT)
  • Re: Beginner with cyclic peptide Peter Freddolino (Tue Apr 29 2008 - 11:44:04 CDT)
• Rolex replica is a ultimate gift Jimmie Corona (Tue Apr 29 2008 - 08:25:38 CDT)
• clarification to "problem using pbc wrap" politr_at_huji.ac.il (Tue Apr 29 2008 - 06:43:23 CDT)
• problem using pbc wrap politr_at_huji.ac.il (Tue Apr 29 2008 - 05:52:09 CDT)
• (no subject) politr_at_huji.ac.il (Tue Apr 29 2008 - 05:49:41 CDT)
  • Re: problem using pbc wrap Axel Kohlmeyer (Tue Apr 29 2008 - 06:49:20 CDT)
• Spring quality watches offer Bryce Vang (Mon Apr 28 2008 - 12:56:22 CDT)
• Hot replica watches from 2008 Rudy Puckett (Sun Apr 27 2008 - 14:53:15 CDT)
• Re: namd-l: How to play molecule trajectory with VMD? Regina Politi (Sun Apr 27 2008 - 07:15:22 CDT)
• Replica watch is a perfect gift Christian Courtney (Sun Apr 27 2008 - 04:18:34 CDT)
• Replica watch is a perfect gift Murray Dyer (Sat Apr 26 2008 - 17:18:11 CDT)
• Can not enter text in VMD plugin window Dong Xu (Fri Apr 25 2008 - 21:21:16 CDT)
  • Re: Can not enter text in VMD plugin window Axel Kohlmeyer (Fri Apr 25 2008 - 21:52:12 CDT)
  • Re: Can not enter text in VMD plugin window John Stone (Fri Apr 25 2008 - 21:53:05 CDT)
    • Re: Can not enter text in VMD plugin window Dong Xu (Sat Apr 26 2008 - 00:10:04 CDT)
      • Re: Can not enter text in VMD plugin window John Stone (Sat Apr 26 2008 - 00:25:15 CDT)
      • Re: Can not enter text in VMD plugin window Dong Xu (Mon Apr 28 2008 - 13:04:52 CDT)
      • Re: Can not enter text in VMD plugin window John Stone (Mon Apr 28 2008 - 13:25:30 CDT)
• Eigen values of Moment of Intertia Tensor greddy1_at_umd.edu (Fri Apr 25 2008 - 15:12:19 CDT)
• Eigen values of Moment of Intertia Tensor greddy1_at_umd.edu (Fri Apr 25 2008 - 10:19:52 CDT)
• You can save 80% Arturo Fernandez (Fri Apr 25 2008 - 05:58:21 CDT)
• Get one of these awesome replicas Jerry Kiser (Thu Apr 24 2008 - 18:45:18 CDT)
• problem with "within" command of VMD politr_at_huji.ac.il (Thu Apr 24 2008 - 08:22:23 CDT)
  • Re: problem with "within" command of VMD Axel Kohlmeyer (Thu Apr 24 2008 - 08:43:19 CDT)
• viewing pca output Bala subramanian (Thu Apr 24 2008 - 08:09:43 CDT)
  • Re: viewing pca output John Stone (Thu May 01 2008 - 22:38:31 CDT)
    • Re: viewing pca output Bala subramanian (Fri May 02 2008 - 06:16:00 CDT)
      • Re: viewing pca output John Stone (Fri May 02 2008 - 16:36:51 CDT)
• Inexpensive Louis Vuitton bags Buford Granger (Thu Apr 24 2008 - 09:03:05 CDT)
• resolution screen in Linux andrea spitaleri (Thu Apr 24 2008 - 07:33:24 CDT)
  • Re: resolution screen in Linux Axel Kohlmeyer (Thu Apr 24 2008 - 08:15:59 CDT)
  • Re: resolution screen in Linux John Stone (Thu Apr 24 2008 - 08:46:50 CDT)
    • Re: resolution screen in Linux andrea spitaleri (Mon Apr 28 2008 - 02:54:15 CDT)
• how to identify DNA-protein interaction interface BERGY (Thu Apr 24 2008 - 05:42:53 CDT)
  • Re: how to identify DNA-protein interaction interface Thomas C. Bishop (Thu Apr 24 2008 - 09:40:50 CDT)
• problem while running VMD politr_at_huji.ac.il (Thu Apr 24 2008 - 03:31:22 CDT)
• problem while running VMD Regina Politi (Thu Apr 24 2008 - 03:30:19 CDT)
  • Re: problem while running VMD John Stone (Thu Apr 24 2008 - 09:20:17 CDT)
• One of a kind replicas Erin Ziegler (Wed Apr 23 2008 - 21:53:24 CDT)
• Rendering Labels with Tachyon Anthony Ivetac (Wed Apr 23 2008 - 18:18:33 CDT)
  • Re: Rendering Labels with Tachyon John Stone (Wed Apr 23 2008 - 19:36:49 CDT)
    • Re: Rendering Labels with Tachyon Anthony Ivetac (Thu Apr 24 2008 - 11:58:52 CDT)
      • Re: Rendering Labels with Tachyon Axel Kohlmeyer (Thu Apr 24 2008 - 14:45:02 CDT)
      • Re: Rendering Labels with Tachyon Anthony Ivetac (Thu Apr 24 2008 - 17:43:08 CDT)
      • Re: Rendering Labels with Tachyon Leonardo Trabuco (Thu Apr 24 2008 - 18:13:06 CDT)
      • Re: Rendering Labels with Tachyon Axel Kohlmeyer (Thu Apr 24 2008 - 17:29:10 CDT)
• Get your watch now Helena Slater (Wed Apr 23 2008 - 12:17:13 CDT)
• measure distance politr_at_huji.ac.il (Wed Apr 23 2008 - 09:02:41 CDT)
  • Re: measure distance Axel Kohlmeyer (Wed Apr 23 2008 - 09:04:00 CDT)
  • Re: measure distance Jian Zou (Wed Apr 23 2008 - 09:45:58 CDT)
• memorry problem politr_at_huji.ac.il (Wed Apr 23 2008 - 06:48:53 CDT)
  • Re: memorry problem Axel Kohlmeyer (Wed Apr 23 2008 - 06:58:42 CDT)
    • Re: memorry problem Axel Kohlmeyer (Fri May 02 2008 - 15:04:02 CDT)
• bug in the g(r) evaluation? cipitaua_at_gmail.com (Tue Apr 22 2008 - 09:30:37 CDT)
  • Re: bug in the g(r) evaluation? Axel Kohlmeyer (Tue Apr 22 2008 - 10:10:35 CDT)
    • Re: bug in the g(r) evaluation? cipitaua_at_gmail.com (Tue Apr 22 2008 - 11:06:14 CDT)
      • Re: bug in the g(r) evaluation? Axel Kohlmeyer (Tue Apr 22 2008 - 14:32:07 CDT)
      • Re: bug in the g(r) evaluation? cipitaua_at_gmail.com (Wed Apr 23 2008 - 07:50:12 CDT)
• alignment problem. trying to align new lipid to bilayer, but lipid always has wrong direction? maria goranovic (Tue Apr 22 2008 - 07:02:42 CDT)
• One of a kind replicas Jane Mayberry (Mon Apr 21 2008 - 07:16:11 CDT)
• Tag Heuer replicas better than originals Errol Lusk (Sun Apr 20 2008 - 18:30:56 CDT)
• Tag Heuer replicas better than originals Corine Brady (Sun Apr 20 2008 - 07:33:41 CDT)
• Tag Heuer replicas better than originals Mona Gomes (Sat Apr 19 2008 - 17:17:44 CDT)
• warnings during plugin build Cojocaru,Vlad (Sat Apr 19 2008 - 09:09:32 CDT)
  • Re: warnings during plugin build Axel Kohlmeyer (Sat Apr 19 2008 - 09:21:04 CDT)
    • RE: warnings during plugin build Cojocaru,Vlad (Sat Apr 19 2008 - 13:34:22 CDT)
    • Re: warnings during plugin build John Stone (Sat Apr 19 2008 - 14:29:46 CDT)
  • Re: warnings during plugin build John Stone (Sat Apr 19 2008 - 14:46:06 CDT)
    • RE: warnings during plugin build Cojocaru,Vlad (Sat Apr 19 2008 - 17:53:58 CDT)
      • RE: warnings