VMD-L Mailing List
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About this archive
Starting: Thu Dec 19 1996 - 11:40:41 CST
Ending: Fri Nov 20 2009 - 13:23:18 CST
- coarse-grained solvate usage Francesco Pietra (Fri Nov 20 2009 - 05:12:35 CST)
- aquire coordinates from the points of the solvent representation Nuno Sousa Cerqueira (Thu Nov 19 2009 - 13:53:40 CST)
- solvate error Rebecca Alexander (Thu Nov 19 2009 - 11:48:42 CST)
- paratool problem sarah k (Wed Nov 18 2009 - 23:43:52 CST)
- Is it the bug of VMD1.87_partool? Aurum Bai (Wed Nov 18 2009 - 06:29:56 CST)
- xzy format and ResType Christine Horejs (Tue Nov 17 2009 - 14:03:01 CST)
- Holo-Bench with VMD and Flystick2 and/or Phantom Carsten Olbrich (Tue Nov 17 2009 - 12:03:56 CST)
- polymer bead spring model file format Ding, L. (Tue Nov 17 2009 - 11:15:50 CST)
- Changing Nvidia driver Christian Wohlschlager (Tue Nov 17 2009 - 02:46:23 CST)
- VMD video-projection in 3D Nicolas Floquet (Mon Nov 16 2009 - 08:08:49 CST)
- Error: failed on end of segment with RBCG Francesco Pietra (Sun Nov 15 2009 - 03:18:57 CST)
- Multiseq question Tomek Wlodarski (Sat Nov 14 2009 - 08:02:43 CST)
- parent molecule sarah k (Fri Nov 13 2009 - 23:59:28 CST)
- (no subject) Francesco Pietra (Fri Nov 13 2009 - 03:23:21 CST)
- version 1.8.7 for amd64 and cg tools Francesco Pietra (Thu Nov 12 2009 - 23:15:31 CST)
- PBCTools-problem getting unitcell parameters A D (Thu Nov 12 2009 - 19:40:31 CST)
- problems displaying newcartoon representation Robert Meklemburg (Thu Nov 12 2009 - 11:17:19 CST)
- Stop using directory from previous session J. Rui Rodrigues (Wed Nov 11 2009 - 10:54:01 CST)
- vmd bug in ubuntu 9.10 ChoiHeeSung (Wed Nov 11 2009 - 10:53:04 CST)
- bad_alloc error Gustavo Gust (Wed Nov 11 2009 - 09:04:34 CST)
- paratool and fatal error sarah k (Tue Nov 10 2009 - 23:27:33 CST)
- Problem with exit button Nuno Sousa Cerqueira (Tue Nov 10 2009 - 04:55:24 CST)
- CG Builder Francesco Pietra (Mon Nov 09 2009 - 14:06:44 CST)
- plugin for reading (and writing) trajectories with a varying number of atoms Axel Kohlmeyer (Fri Nov 06 2009 - 14:51:02 CST)
- Question about Keyboaerd events send from other PC Christian Wohlschlager (Thu Nov 05 2009 - 02:29:36 CST)
- rmsd calculation and plot sarah k (Tue Nov 03 2009 - 23:18:29 CST)
- radius of gyration units Bernardo Sosa Padilla Araujo (Tue Nov 03 2009 - 15:08:36 CST)
- Matrix: Warning: no convergence (0.00000000<390.26229858 after 1000 iterations). Bob Johnson (Tue Nov 03 2009 - 14:49:29 CST)
- Control of aminoacid ionization in VMD Luis Agullo (LAB) (Tue Nov 03 2009 - 04:50:55 CST)
- VMD autopsfgen and Mg2+ Luis Agullo (LAB) (Tue Nov 03 2009 - 04:17:59 CST)
- Re: VMD autopsfgen and Mg2+ John Stone (Wed Nov 04 2009 - 09:49:17 CST)
- Re: VMD autopsfgen and Mg2+ sarah k (Wed Nov 04 2009 - 23:47:20 CST)
- Re: VMD autopsfgen and Mg2+ Peter Freddolino (Thu Nov 05 2009 - 20:02:41 CST)
- Re: VMD autopsfgen and Mg2+ Luis Agullo (LAB) (Fri Nov 06 2009 - 03:58:19 CST)
- Re: VMD autopsfgen and Mg2+ John Stone (Fri Nov 06 2009 - 09:55:29 CST)
- Re: VMD autopsfgen and Mg2+ Luis Agullo (LAB) (Mon Nov 09 2009 - 02:46:52 CST)
- Re: VMD autopsfgen and Mg2+ Peter Freddolino (Fri Nov 06 2009 - 19:23:54 CST)
- Re: VMD autopsfgen and Mg2+ Peter Freddolino (Tue Nov 10 2009 - 23:24:02 CST)
- Re: VMD autopsfgen and Mg2+ Peter Freddolino (Thu Nov 05 2009 - 09:03:44 CST)
- Re: VMD autopsfgen and Mg2+ John Stone (Wed Nov 04 2009 - 09:49:17 CST)
- running under Shell using VMD Nuno Sousa Cerqueira (Tue Nov 03 2009 - 02:29:30 CST)
- memory issues Paymon Pirzadeh (Mon Nov 02 2009 - 12:02:14 CST)
- Using Tcl functions in a C-plugin Olaf Lenz (Mon Nov 02 2009 - 07:29:24 CST)
- movie rendering Liang, Linus H. (Mon Nov 02 2009 - 07:08:35 CST)
- dll by c++ cannot be recognized by VMD tk console ? vmd_chcwaaa (Sun Nov 01 2009 - 01:32:42 CDT)
- full version OEM soft chucruz_at_ks.uiuc.edu (Thu Oct 29 2009 - 23:14:25 CDT)
- Downloadable version chucruz_at_ks.uiuc.edu (Thu Oct 29 2009 - 02:51:04 CDT)
- RBCG bead diameter Christine Horejs (Wed Oct 28 2009 - 11:54:50 CDT)
- abnormal water surface after nvt and npt for POPC membrane pxq ĹÓŃ©ÇŰ (Tue Oct 27 2009 - 19:57:58 CDT)
- Unable to find Stride output file: /usr/tmp/... Bob Johnson (Tue Oct 27 2009 - 12:22:03 CDT)
- Re: Unable to find Stride output file: /usr/tmp/... John Stone (Tue Oct 27 2009 - 12:37:28 CDT)
- Re: Unable to find Stride output file: /usr/tmp/... Bob Johnson (Tue Oct 27 2009 - 12:42:06 CDT)
- Re: Unable to find Stride output file: /usr/tmp/... John Stone (Tue Oct 27 2009 - 12:45:16 CDT)
- Re: Unable to find Stride output file: /usr/tmp/... Bob Johnson (Tue Oct 27 2009 - 12:47:55 CDT)
- Re: Unable to find Stride output file: /usr/tmp/... John Stone (Tue Oct 27 2009 - 12:56:51 CDT)
- Re: Unable to find Stride output file: /usr/tmp/... Axel Kohlmeyer (Tue Oct 27 2009 - 13:18:17 CDT)
- Re: Unable to find Stride output file: /usr/tmp/... Roman Petrenko (Tue Oct 27 2009 - 15:13:10 CDT)
- Re: Unable to find Stride output file: /usr/tmp/... Bob Johnson (Tue Oct 27 2009 - 12:42:06 CDT)
- Re: Unable to find Stride output file: /usr/tmp/... John Stone (Tue Oct 27 2009 - 12:37:28 CDT)
- lammpstrj file as pdb Christine Horejs (Tue Oct 27 2009 - 11:50:06 CDT)
- Tachyon Rendering daniel aguayo (Tue Oct 27 2009 - 10:27:52 CDT)
- RBCG Model Katherine Parra (Tue Oct 27 2009 - 09:19:55 CDT)
- order parameters for long lipids Raul Araya (Tue Oct 27 2009 - 08:47:38 CDT)
- pbwithin and within differences Gustavo Gust (Tue Oct 27 2009 - 06:48:51 CDT)
- Solvate-GUI Problem: Collapses Solvent to Origin Joshua Adelman (Mon Oct 26 2009 - 20:03:37 CDT)
- using NAMD with SPC water politr_at_huji.ac.il (Mon Oct 26 2009 - 07:48:26 CDT)
- Re: using NAMD with SPC water Axel Kohlmeyer (Mon Oct 26 2009 - 08:48:24 CDT)
- Re: using NAMD with SPC water L. Michel Espinoza-Fonseca (Mon Oct 26 2009 - 09:40:33 CDT)
- Re: using NAMD with SPC water Axel Kohlmeyer (Mon Oct 26 2009 - 10:08:08 CDT)
- Re: using NAMD with SPC water L. Michel Espinoza-Fonseca (Mon Oct 26 2009 - 10:24:19 CDT)
- Re: using NAMD with SPC water Axel Kohlmeyer (Mon Oct 26 2009 - 10:42:13 CDT)
- Re: using NAMD with SPC water L. Michel Espinoza-Fonseca (Mon Oct 26 2009 - 10:54:56 CDT)
- Re: using NAMD with SPC water politr_at_huji.ac.il (Tue Oct 27 2009 - 11:12:21 CDT)
- Re: using NAMD with SPC water Axel Kohlmeyer (Sat Oct 31 2009 - 14:23:13 CDT)
- Re: using NAMD with SPC water L. Michel Espinoza-Fonseca (Mon Oct 26 2009 - 09:40:33 CDT)
- Re: using NAMD with SPC water Axel Kohlmeyer (Mon Oct 26 2009 - 08:48:24 CDT)
- unparameterized residue sarah k (Sun Oct 25 2009 - 02:24:21 CDT)
- VMD and Intel X3100 GPU Mohd Farid Ismail (Sat Oct 24 2009 - 16:27:38 CDT)
- Loading trajectory into Multiseq stephane acoca (Fri Oct 23 2009 - 18:07:02 CDT)
- Selections based on "bonded to" Schmidt, Mike (Fri Oct 23 2009 - 10:56:00 CDT)
- Bugs ? Representation window does not update new material TRINH Minh Hieu (Fri Oct 23 2009 - 08:57:49 CDT)
- Cuda an a cluster ? Christian Wohlschlager (Thu Oct 22 2009 - 02:56:18 CDT)
- Problem with vmd and ssh -X Thomas Lemmin (Thu Oct 22 2009 - 02:51:44 CDT)
- Input File Format Arian Arian (Wed Oct 21 2009 - 14:03:01 CDT)
- questions Umesh Ghoshdastider (Wed Oct 21 2009 - 11:56:24 CDT)
- bond connectivity not displayed in VMD Elias Ahadi (Wed Oct 21 2009 - 11:36:39 CDT)
- Atom sorting according to resid andrea carotti (Wed Oct 21 2009 - 10:16:33 CDT)
- Direct manipulation of the camera poker_at_physics.usyd.edu.au (Wed Oct 21 2009 - 00:21:57 CDT)
- X server is not capable of displaying double RGB images with a Z buffer Ma.Busch (Tue Oct 20 2009 - 04:09:40 CDT)
- Translating an atom along a specific direction and saving the pdb files priyodorshi satpati (Tue Oct 20 2009 - 04:08:12 CDT)
- glycerol AyĹźe Ă–zlem Aykut (Tue Oct 20 2009 - 03:13:57 CDT)
- NAMD can't malloc() error Ronald Salesky (Mon Oct 19 2009 - 12:44:55 CDT)
- Arbitrary values of isosurface aizoon_at_gmx.net (Mon Oct 19 2009 - 06:25:32 CDT)
- paratool: unable to load optimized geometry Stanislaw Bobritsky (Mon Oct 19 2009 - 03:21:33 CDT)
- Calculate Free Volume? YingZhe (Sun Oct 18 2009 - 20:07:30 CDT)
- Question about running tcl/tk script without graphic interface (vmd option -dispdev none ...) Alberto Sergio Garay (Fri Oct 16 2009 - 17:48:04 CDT)
- MDFF sim Problem Joshua Adelman (Fri Oct 16 2009 - 16:20:03 CDT)
- Re: Align membrane Ramya Gamini (Fri Oct 16 2009 - 15:02:57 CDT)
- Align membrane Ale Gomez (Fri Oct 16 2009 - 13:24:48 CDT)
- vmd mailing list Roman Petrenko (Thu Oct 15 2009 - 17:14:10 CDT)
- Re: Water Sphere Solvation Peter Murphy (Tue Oct 13 2009 - 16:54:45 CDT)
- Problems with selecting atoms for representations Joseph Bylund (Tue Oct 13 2009 - 10:39:52 CDT)
- writing gromacs .trr format with nonorthorhomic cells Matt Watkins (Tue Oct 13 2009 - 07:05:27 CDT)
- FW: Disulfide bonds Andres Morales N (Tue Oct 13 2009 - 01:02:30 CDT)
- Disulfude bonds Andres Morales N (Tue Oct 13 2009 - 01:00:39 CDT)
- colour residues Christine Horejs (Mon Oct 12 2009 - 17:58:31 CDT)
- covalently bonded atoms politr_at_huji.ac.il (Mon Oct 12 2009 - 11:11:22 CDT)
- catdcd Katherine Parra (Mon Oct 12 2009 - 09:59:23 CDT)
- format of pdb file Christine Horejs (Mon Oct 12 2009 - 09:04:51 CDT)
- Load struture form memory Nuno Sousa Cerqueira (Mon Oct 12 2009 - 06:06:47 CDT)
- Lipid Membrane Ale Gomez (Sun Oct 11 2009 - 22:58:08 CDT)
- mac tk widgets Nuno Sousa Cerqueira (Sat Oct 10 2009 - 21:13:15 CDT)
- VMD 1.8.7 CUDA on Mac OS X 10.6.1 Mengjuei Hsieh (Sat Oct 10 2009 - 18:23:52 CDT)
- Parameter file for protein siloxane interactions Nilesh Ingle (Thu Oct 08 2009 - 21:47:14 CDT)
- Problem using psfgen and carbohydrate charmm parameters. Alexandre Suman de Araujo (Thu Oct 08 2009 - 16:19:26 CDT)
- how to display the periodic box in VMD Lan He (Wed Oct 07 2009 - 17:51:41 CDT)
- Re: how to display the periodic box in VMD Axel Kohlmeyer (Wed Oct 07 2009 - 18:39:55 CDT)
- Re: how to display the periodic box in VMD Olaf Lenz (Thu Oct 08 2009 - 02:03:54 CDT)
- RE: how to display the periodic box in VMD Lan He (Thu Oct 08 2009 - 10:46:37 CDT)
- RE: how to display the periodic box in VMD Lan He (Thu Oct 08 2009 - 13:29:10 CDT)
- RE: how to display the periodic box in VMD Axel Kohlmeyer (Thu Oct 08 2009 - 14:30:27 CDT)
- Re: how to display the periodic box in VMD Olaf Lenz (Fri Oct 09 2009 - 01:49:07 CDT)
- Re: how to display the periodic box in VMD Olaf Lenz (Thu Oct 08 2009 - 02:03:54 CDT)
- Re: how to display the periodic box in VMD Axel Kohlmeyer (Wed Oct 07 2009 - 18:39:55 CDT)
- CatDCD Desmond Support andrea carotti (Wed Oct 07 2009 - 10:31:53 CDT)
- How to generate a monolayer in VMD Nilesh Ingle (Mon Oct 05 2009 - 18:55:37 CDT)
- How to translate my diffused protein back to COM? A D (Mon Oct 05 2009 - 18:20:15 CDT)
- Tracking atoms automatically Nanako Takahashi (Mon Oct 05 2009 - 11:52:37 CDT)
- distance of two center of mass Nicola Giacche' (Mon Oct 05 2009 - 04:36:37 CDT)
- Breaking a trajectory into separate files with tcl Patrick Redmill (Sun Oct 04 2009 - 21:48:27 CDT)
- R.E.D.-III.3 tools release - q4md-forcefieldtools.org FyD (Sun Oct 04 2009 - 09:37:06 CDT)
- problem with psfgen Q=C5=CC=C1=CC=CF=D7_=E9=CC=D8=D1?= (Sat Oct 03 2009 - 05:35:24 CDT)
- Problems with Stride Martin K. Jones (Fri Oct 02 2009 - 12:18:41 CDT)
- Rx for VMD crashing PC? Ronald Salesky (Thu Oct 01 2009 - 21:57:00 CDT)
- how to load an external file to user field Sun Yicheng (Thu Oct 01 2009 - 10:28:39 CDT)
- multiseq and fasta files from pdb Vlad Cojocaru (Thu Oct 01 2009 - 04:26:01 CDT)
- Reading output of quantum packages and plotting orbitals Ignacio Fernández Galván (Wed Sep 30 2009 - 11:57:35 CDT)
- Re: Reading output of quantum packages and plotting orbitals Axel Kohlmeyer (Wed Sep 30 2009 - 17:38:26 CDT)
- Re: Reading output of quantum packages and plotting orbitals Ignacio Fernández Galván (Fri Oct 02 2009 - 03:01:36 CDT)
- Re: Reading output of quantum packages and plotting orbitals Axel Kohlmeyer (Fri Oct 02 2009 - 11:52:09 CDT)
- Re: Reading output of quantum packages and plotting orbitals Ignacio Fernández Galván (Fri Oct 23 2009 - 03:29:22 CDT)
- Re: Reading output of quantum packages and plotting orbitals saam (Fri Oct 23 2009 - 08:39:32 CDT)
- Re: Reading output of quantum packages and plotting orbitals Ignacio Fernández Galván (Fri Oct 23 2009 - 09:29:32 CDT)
- Re: Reading output of quantum packages and plotting orbitals saam (Fri Oct 23 2009 - 10:21:07 CDT)
- Re: Reading output of quantum packages and plotting orbitals John Stone (Fri Oct 23 2009 - 09:49:38 CDT)
- Re: Reading output of quantum packages and plotting orbitals John Stone (Mon Oct 05 2009 - 21:10:49 CDT)
- Re: Reading output of quantum packages and plotting orbitals Ignacio Fernández Galván (Fri Oct 02 2009 - 03:01:36 CDT)
- Re: Reading output of quantum packages and plotting orbitals Axel Kohlmeyer (Wed Sep 30 2009 - 17:38:26 CDT)
- namd2.7b1, tip4p, and dummies Edward Lyman (Wed Sep 30 2009 - 01:36:06 CDT)
- trace cartoon etc displaying incompletely after alignment Rahul Mahajan (Tue Sep 29 2009 - 21:23:53 CDT)
- Representation problem Ahmet Bakan (Mon Sep 28 2009 - 16:22:36 CDT)
- model protein chain not displayed properly Elias Ahadi (Mon Sep 28 2009 - 13:38:32 CDT)
- H_Bonds Katherine Parra (Mon Sep 28 2009 - 12:53:21 CDT)
- Return value of a vector Stephanie Held (Mon Sep 28 2009 - 08:39:27 CDT)
- user field Sun Yicheng (Mon Sep 28 2009 - 08:36:34 CDT)
- text timer in vmd animations maria goranovic (Mon Sep 28 2009 - 04:57:16 CDT)
- Re: text timer in vmd animations Axel Kohlmeyer (Mon Sep 28 2009 - 09:30:19 CDT)
- Re: text timer in vmd animations maria goranovic (Mon Sep 28 2009 - 09:55:02 CDT)
- Re: text timer in vmd animations John Stone (Mon Sep 28 2009 - 10:07:31 CDT)
- Re: text timer in vmd animations maria goranovic (Mon Sep 28 2009 - 10:19:41 CDT)
- Re: text timer in vmd animations maria goranovic (Mon Sep 28 2009 - 10:53:04 CDT)
- Re: text timer in vmd animations John Stone (Mon Oct 05 2009 - 22:22:10 CDT)
- Re: text timer in vmd animations Axel Kohlmeyer (Mon Sep 28 2009 - 10:40:38 CDT)
- Re: text timer in vmd animations maria goranovic (Mon Sep 28 2009 - 09:55:02 CDT)
- Re: text timer in vmd animations Axel Kohlmeyer (Mon Sep 28 2009 - 09:30:19 CDT)
- Paratool: QMTool::bondlist error message Sebastian Stolzenberg (Fri Sep 25 2009 - 21:53:27 CDT)
- Overlaying 2 structures madura_at_duq.edu (Fri Sep 25 2009 - 15:55:05 CDT)
- ERROR) Error reading bond information. Luca Gelisio (Fri Sep 25 2009 - 05:40:17 CDT)
- Re: ERROR) Error reading bond information. John Stone (Fri Sep 25 2009 - 07:41:11 CDT)
- Re: ERROR) Error reading bond information. Axel Kohlmeyer (Fri Sep 25 2009 - 07:55:47 CDT)
- Re: ERROR) Error reading bond information. Luca Gelisio (Fri Sep 25 2009 - 09:03:41 CDT)
- Re: ERROR) Error reading bond information. Axel Kohlmeyer (Fri Sep 25 2009 - 09:11:49 CDT)
- Re: ERROR) Error reading bond information. Luca Gelisio (Fri Sep 25 2009 - 09:25:55 CDT)
- Re: ERROR) Error reading bond information. Axel Kohlmeyer (Fri Sep 25 2009 - 10:02:52 CDT)
- Re: ERROR) Error reading bond information. John Stone (Fri Sep 25 2009 - 11:03:47 CDT)
- Re: ERROR) Error reading bond information. Luca Gelisio (Fri Sep 25 2009 - 11:55:11 CDT)
- Re: ERROR) Error reading bond information. Axel Kohlmeyer (Fri Sep 25 2009 - 12:16:30 CDT)
- Re: ERROR) Error reading bond information. Luca Gelisio (Fri Sep 25 2009 - 09:03:41 CDT)
- Frame creation Andreas Wagenmann (Thu Sep 24 2009 - 09:28:50 CDT)
- problem in reading .nc NETCDF FILE Genform GK (Wed Sep 23 2009 - 23:02:10 CDT)
- Web-based Flash/Quicktime 3-D VMD/Tachyon renderings of PDB structures John Stone (Wed Sep 23 2009 - 15:45:30 CDT)
- double bonds Taufik Al-Sarraj (Wed Sep 23 2009 - 13:13:12 CDT)
- trajectory analysis Barry Bickmore (Wed Sep 23 2009 - 11:39:08 CDT)
- "Lines" representation does not show Martin Lepąík (Wed Sep 23 2009 - 10:49:33 CDT)
- Re: "Lines" representation does not show John Stone (Wed Sep 23 2009 - 11:03:05 CDT)
- Re: "Lines" representation does not show Martin Lepsik (Thu Sep 24 2009 - 05:16:09 CDT)
- Re: "Lines" representation does not show John Stone (Thu Sep 24 2009 - 09:08:57 CDT)
- Re: "Lines" representation does not show:remote Martin Lepsik (Fri Sep 25 2009 - 09:07:41 CDT)
- Re: "Lines" representation does not show Martin Lepsik (Fri Sep 25 2009 - 09:06:46 CDT)
- Re: "Lines" representation does not show John Stone (Fri Sep 25 2009 - 10:55:46 CDT)
- Re: "Lines" representation does not show Martin Lepsik (Thu Sep 24 2009 - 05:16:09 CDT)
- Re: "Lines" representation does not show John Stone (Wed Sep 23 2009 - 11:03:05 CDT)
- atom selection Myunggi Yi (Mon Sep 21 2009 - 13:45:20 CDT)
- [carlos.simmerling@gmail.com: ACS awards application announcements] John Stone (Mon Sep 21 2009 - 12:54:04 CDT)
- Resize window from TCL Ondrej Marsalek (Mon Sep 21 2009 - 11:51:46 CDT)
- automated loading Myunggi Yi (Mon Sep 21 2009 - 10:27:58 CDT)
- problem with density map obtained by volmap Ana Célia Vila Verde (Sun Sep 20 2009 - 08:01:12 CDT)
- Velocity Auto Correlation Goutham (Fri Sep 18 2009 - 14:53:42 CDT)
- water molecules around proteins Katherine Parra (Fri Sep 18 2009 - 12:04:04 CDT)
- Install VMD binary with CUDA, CUDA card detected but then error "no CUDA-capable device is available" Jim Parker (Thu Sep 17 2009 - 19:33:51 CDT)
- Re: Install VMD binary with CUDA, CUDA card detected but then error "no CUDA-capable device is available" John Stone (Thu Sep 17 2009 - 21:34:36 CDT)
- Installing Multiseq updates Jeremias Corradi (Thu Sep 17 2009 - 08:42:51 CDT)
- Average structure and NamdEnergy Andres Morales N (Thu Sep 17 2009 - 00:03:36 CDT)
- Install VMD with plugins to NAMD Jim Parker (Wed Sep 16 2009 - 21:44:31 CDT)
- DLP Stereo and VR toolkit integration with vmd Simon Su (Wed Sep 16 2009 - 16:04:25 CDT)
- Average structure and NamdEnergy Andres Morales N (Wed Sep 16 2009 - 14:27:23 CDT)
- Reading new amber prmtop formats. Crowley, Michael (Wed Sep 16 2009 - 12:21:42 CDT)
- Re: segid WT100 is longer than 4 characters allowed by psf format Ramya Gamini (Wed Sep 16 2009 - 08:01:57 CDT)
- segid WT100 is longer than 4 characters allowed by psf format Luca Gelisio (Wed Sep 16 2009 - 03:34:16 CDT)
- PSF for AMBER top + crd files Goutham (Tue Sep 15 2009 - 16:35:23 CDT)
- rotate dihedral angle Jorgen Simonsen (Mon Sep 14 2009 - 14:08:21 CDT)
- CGTools error: atom select: cannot parse selection text... wuxiao (Mon Sep 14 2009 - 08:48:36 CDT)
- Segmentation fault on linux Fedora 11 Rob (Sun Sep 13 2009 - 19:16:28 CDT)
- VMD and NetCDF under Windows Vista 32bit Jan F. Totz (Sun Sep 13 2009 - 01:57:02 CDT)
- get coordinates Andres Morales N (Sat Sep 12 2009 - 12:05:35 CDT)
- "measure fit" problem Yi Shang (Wed Sep 09 2009 - 13:31:17 CDT)
- Mistakes in the 1.8.7 User guide Myunggi Yi (Wed Sep 09 2009 - 10:18:40 CDT)
- psf for CNT? Ronald Salesky (Wed Sep 09 2009 - 09:55:05 CDT)
- Question about PSF generation NAMITA BHADRA (Tue Sep 08 2009 - 23:01:53 CDT)
- catdcd in Windows Wei Chen (Tue Sep 08 2009 - 21:44:25 CDT)
- (no subject) Roshan Tasgaonkar (Tue Sep 08 2009 - 20:48:01 CDT)
- How to select a hetatom while get rid of N-term ACE in atomselect Sujata Sovani (Tue Sep 08 2009 - 17:47:43 CDT)
- Main menu not compiled? Pieter van 't Hof (Fri Sep 04 2009 - 09:00:56 CDT)
- RE: namd-l: Re: rmsd matrix Andres Morales N (Thu Sep 03 2009 - 15:00:30 CDT)
- rmsd matrix Andres Morales N (Thu Sep 03 2009 - 07:45:06 CDT)
- Bond representation of coarse grained molecules BAN,YOUNG MIN (Wed Sep 02 2009 - 16:52:23 CDT)
- Re: Bond representation of coarse grained molecules John Stone (Fri Sep 04 2009 - 09:49:26 CDT)
- VMD on Suse 11.1 w/ NVIDIA dies. Bishop, Thomas C (Fri Sep 04 2009 - 17:52:35 CDT)
- Re: VMD on Suse 11.1 w/ NVIDIA dies. Axel Kohlmeyer (Sat Sep 05 2009 - 14:33:34 CDT)
- Re: VMD on Suse 11.1 w/ NVIDIA dies. John Stone (Tue Sep 08 2009 - 10:57:12 CDT)
- Re: VMD on Suse 11.1 w/ NVIDIA dies. Thomas C. Bishop (Tue Sep 08 2009 - 16:55:55 CDT)
- Re: VMD on Suse 11.1 w/ NVIDIA dies. Axel Kohlmeyer (Wed Sep 09 2009 - 09:17:55 CDT)
- Re: VMD on Suse 11.1 w/ NVIDIA dies. Thomas C. Bishop (Thu Sep 10 2009 - 16:53:19 CDT)
- Re: VMD on Suse 11.1 w/ NVIDIA dies. John Stone (Thu Sep 10 2009 - 17:24:03 CDT)
- Re: VMD on Suse 11.1 w/ NVIDIA dies. Thomas C. Bishop (Thu Sep 10 2009 - 17:44:05 CDT)
- Re: Bond representation of coarse grained molecules Baofu Qiao (Wed Oct 07 2009 - 02:21:14 CDT)
- Script error Negar Ashari Astani (Tue Sep 01 2009 - 11:58:32 CDT)
- VMD on MacOSX 10.6 Snow Leopard: fast Christoph Weber (Mon Aug 31 2009 - 18:31:11 CDT)
- 3D pdf problem Michael K. Gilson (Mon Aug 31 2009 - 06:24:06 CDT)
- superimpose two proteins with different residue numbers Soumya Lipsa Rath (Mon Aug 31 2009 - 02:55:13 CDT)
- VMD, MultiSeq, STAMP Damian Loska (Sun Aug 30 2009 - 11:42:14 CDT)
- User field Urahata (Fri Aug 28 2009 - 10:40:43 CDT)
- viewing MOs Dan thomas Major (Fri Aug 28 2009 - 09:47:34 CDT)
- superimposing proteins with non-similar coordinates Mark M Huntress (Wed Aug 26 2009 - 16:17:41 CDT)
- Re: superimposing proteins with non-similar coordinates Schreiner Eduard (Wed Aug 26 2009 - 16:33:39 CDT)
- Re: superimposing proteins with non-similar coordinates John Stone (Wed Aug 26 2009 - 16:31:46 CDT)
- Re: superimposing proteins with non-similar coordinates Christopher MacDermaid (Wed Aug 26 2009 - 17:17:34 CDT)
- rotating ligand Steve Seibold (Wed Aug 26 2009 - 14:58:19 CDT)
- drawing waterbox Narender Singh Maan (Wed Aug 26 2009 - 09:35:56 CDT)
- Bond in pbc condition Yew Yong Kin (Wed Aug 26 2009 - 01:46:27 CDT)
- selection for polar hydrogens only poker_at_physics.usyd.edu.au (Tue Aug 25 2009 - 22:13:26 CDT)
- tinkerxyz Mark M Huntress (Tue Aug 25 2009 - 19:21:48 CDT)
- problem with 1.8.7 installation Barbault Florent (Tue Aug 25 2009 - 04:50:41 CDT)
- Mac and cmd line Jorgen Simonsen (Mon Aug 24 2009 - 11:58:16 CDT)
- Moving Molecule Steve Seibold (Mon Aug 24 2009 - 10:37:42 CDT)
- using VMD 1.8.7 on a Mac Carolyn Phillips (Sun Aug 23 2009 - 15:13:40 CDT)
- Re: using VMD 1.8.7 on a Mac John Stone (Sun Aug 23 2009 - 21:32:18 CDT)
- Re: using VMD 1.8.7 on a Mac Carolyn Phillips (Mon Aug 24 2009 - 11:33:04 CDT)
- Re: using VMD 1.8.7 on a Mac John Stone (Mon Aug 24 2009 - 15:42:49 CDT)
- Re: using VMD 1.8.7 on a Mac Carolyn Phillips (Mon Aug 24 2009 - 18:24:36 CDT)
- Re: using VMD 1.8.7 on a Mac Joshua D. Moore (Mon Aug 24 2009 - 21:49:10 CDT)
- Re: using VMD 1.8.7 on a Mac John Stone (Tue Aug 25 2009 - 10:34:02 CDT)
- Re: using VMD 1.8.7 on a Mac Robert Brunner (Tue Aug 25 2009 - 12:00:11 CDT)
- Re: using VMD 1.8.7 on a Mac daniel aguayo (Tue Aug 25 2009 - 12:53:02 CDT)
- Re: using VMD 1.8.7 on a Mac Carolyn Phillips (Mon Aug 24 2009 - 11:33:04 CDT)
- Re: using VMD 1.8.7 on a Mac John Stone (Sun Aug 23 2009 - 21:32:18 CDT)
- Re: NAMD tutorial for Windows problem reading pgn file from vmd tkconsole Eric H. Lee (Fri Aug 21 2009 - 17:13:21 CDT)
- NAMD tutorial for Windows problem reading pgn file from vmd tkconsole Carmen Valladares (Fri Aug 21 2009 - 16:26:04 CDT)
- VMD: 1.8.7 win32 opengl runtime error Guanglei Cui (Fri Aug 21 2009 - 09:14:56 CDT)
- Force extension from SMD log file snoze pa (Thu Aug 20 2009 - 17:25:20 CDT)
- Color bar Iman Salehinia (Thu Aug 20 2009 - 16:46:36 CDT)
- Pyhton Mode Peyman Yamin (Thu Aug 20 2009 - 04:49:33 CDT)
- Mutator: Losing Chromophore Carmen Valladares (Wed Aug 19 2009 - 19:14:57 CDT)
- Render command not executed Nicolas SAPAY (Wed Aug 19 2009 - 02:22:18 CDT)
- VMD Tracking VRPN Christian Wohlschlager (Wed Aug 19 2009 - 02:01:49 CDT)
- Rendering polyhedra with POV-Ray Nicolas SAPAY (Tue Aug 18 2009 - 09:53:10 CDT)
- positioning of a compound Steve Seibold (Wed Aug 12 2009 - 14:48:23 CDT)
- Periodic Bonding Liang, Linus H. (Wed Aug 12 2009 - 08:44:19 CDT)
- Turn off the autobond feature in VMD Liang, Linus H. (Wed Aug 12 2009 - 08:27:55 CDT)
- VMD Periodic cells Florentina Tofoleanu (Wed Aug 12 2009 - 07:03:53 CDT)
- CUDA Support Christian Wohlschlager (Wed Aug 12 2009 - 03:09:35 CDT)
- can we control the number and distribution of solvate molecular pxq ĹÓŃ©ÇŰ (Wed Aug 12 2009 - 03:02:33 CDT)
- Re: namd-l: how to write a command to close vmd in shell script? Benjamin Bouvier (Mon Aug 10 2009 - 03:07:38 CDT)
- HRTEM Joshua D. Moore (Fri Aug 07 2009 - 02:20:45 CDT)
- How to compile the source of VMD1.8.7 on linux system Aurum Bai (Fri Aug 07 2009 - 00:10:40 CDT)
- NEW New Christian Wohlschlager (Thu Aug 06 2009 - 07:44:37 CDT)
- Cionize on mac cuda daniel aguayo (Wed Aug 05 2009 - 20:29:07 CDT)
- Re: Cionize on mac cuda John Stone (Wed Aug 05 2009 - 20:43:04 CDT)
- Re: Cionize on mac cuda daniel aguayo (Wed Aug 05 2009 - 20:46:10 CDT)
- clusters visualization with colours Stefano Meliga (Thu Aug 06 2009 - 04:43:05 CDT)
- Re: clusters visualization with colours John Stone (Thu Aug 06 2009 - 11:11:17 CDT)
- Re: Cionize on mac cuda John Stone (Thu Aug 06 2009 - 14:48:09 CDT)
- Re: Cionize on mac cuda daniel aguayo (Tue Aug 11 2009 - 13:16:04 CDT)
- Re: Cionize on mac cuda John Stone (Mon Aug 17 2009 - 13:49:09 CDT)
- Re: Cionize on mac cuda daniel aguayo (Mon Aug 17 2009 - 19:28:30 CDT)
- Re: Cionize on mac cuda daniel aguayo (Wed Aug 05 2009 - 20:46:10 CDT)
- Re: Cionize on mac cuda John Stone (Wed Aug 05 2009 - 20:43:04 CDT)
- Announce: VMD 1.8.7 released John Stone (Mon Aug 03 2009 - 14:21:59 CDT)
- "mol scaleminmax auto" vs. "mol scaleminmax $min_val $max_val" Nadja Lederer (Mon Aug 03 2009 - 06:21:42 CDT)
- Why the win_version of vmd1.86 can not change to python interpreter? Aurum Bai (Sat Aug 01 2009 - 08:21:06 CDT)
- vmd Linux 64 Christian Wohlschlager (Fri Jul 31 2009 - 03:29:04 CDT)
- visualization problem Srikanth Dhondi (Thu Jul 30 2009 - 21:58:27 CDT)
- Building polymer psf from monomer topology Alexandre Suman de Araujo (Thu Jul 30 2009 - 14:48:13 CDT)
- NAMDEnergy Plugin Andres Morales N (Tue Jul 28 2009 - 00:34:43 CDT)
- removed all proton in protein with vmd albert albert (Mon Jul 27 2009 - 01:40:34 CDT)
- PDB COORDINATES Edward P. Manning (Sun Jul 26 2009 - 19:08:28 CDT)
- Stripping out H20 Jehanzeb Hameed (Sun Jul 26 2009 - 18:24:33 CDT)
- File to benchmark a new GPU system luc Renambot (Sun Jul 26 2009 - 16:20:28 CDT)
- order parameter from trajectory Roman Petrenko (Fri Jul 24 2009 - 17:08:50 CDT)
- Lovyeou gumbart_at_ks.uiuc.edu (Fri Jul 24 2009 - 09:31:56 CDT)
- time-averaged RMSD per residue Dawn (Fri Jul 24 2009 - 08:06:08 CDT)
- question about atomselect and periodic condition Linchen Gong (Fri Jul 24 2009 - 05:44:41 CDT)
- Hydrogen Bonding energy Goutham (Thu Jul 23 2009 - 20:56:52 CDT)
- Loevyou gumbart_at_ks.uiuc.edu (Thu Jul 23 2009 - 16:55:17 CDT)
- stereo anaglyph Roman Petrenko (Thu Jul 23 2009 - 16:16:07 CDT)
- TkConsole not working Ziemys, Arturas (Thu Jul 23 2009 - 14:45:20 CDT)
- drawing bond for coarse grained model Sunjoo Lee (Thu Jul 23 2009 - 13:25:46 CDT)
- Save State Fails Carmen Valladares (Tue Jul 21 2009 - 18:57:00 CDT)
- could not visualize DCD file downloaded from VMD website Yi Shang (Tue Jul 21 2009 - 14:59:04 CDT)
- Re: could not visualize DCD file downloaded from VMD website Yi Shang (Tue Jul 21 2009 - 15:05:51 CDT)
- Re: could not visualize DCD file downloaded from VMD website Yi Shang (Tue Jul 21 2009 - 15:24:30 CDT)
- Disable the set output Nicolas SAPAY (Thu Jul 23 2009 - 05:15:24 CDT)
- Re: Disable the set output Axel Kohlmeyer (Thu Jul 23 2009 - 07:45:34 CDT)
- Re: Disable the set output Nicolas Sapay (Thu Jul 23 2009 - 09:28:13 CDT)
- Re: Disable the set output Thomas C. Bishop (Thu Jul 23 2009 - 09:52:15 CDT)
- Re: Disable the set output Leonardo Trabuco (Sat Jul 25 2009 - 10:54:53 CDT)
- Re: Re: could not visualize DCD file downloaded from VMD website Thomas C. Bishop (Thu Jul 23 2009 - 09:21:20 CDT)
- Re: could not visualize DCD file downloaded from VMD website Yi Shang (Tue Jul 21 2009 - 15:24:30 CDT)
- Re: could not visualize DCD file downloaded from VMD website Yi Shang (Tue Jul 21 2009 - 15:05:51 CDT)
- insert a protein into a membrane Lixia Jin Day (Tue Jul 21 2009 - 13:41:21 CDT)
- of diet pills, like a racing heart or queasy stomach ltrabuco_at_ks.uiuc.edu (Tue Jul 21 2009 - 09:47:48 CDT)
- error using Molecule.save() (vmd python) Michael Kreim (Tue Jul 21 2009 - 06:49:44 CDT)
- IMD interface for VASP Michael Robbert (Mon Jul 20 2009 - 17:54:36 CDT)
- need convert when using VMD to make a movie under Mac Yongmei Pan (Mon Jul 20 2009 - 17:49:29 CDT)
- VMD on laptop with ATI Radeon 3650 Ramon Rocha (Mon Jul 20 2009 - 16:00:40 CDT)
- Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer Stanislav Polonsky (Mon Jul 20 2009 - 11:04:25 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer John Stone (Mon Jul 20 2009 - 11:29:20 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer Stanislav Polonsky (Mon Jul 20 2009 - 11:40:40 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer John Stone (Mon Jul 20 2009 - 11:43:38 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer Stanislav Polonsky (Mon Jul 20 2009 - 13:16:31 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer Axel Kohlmeyer (Mon Jul 20 2009 - 15:43:56 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer Stanislav Polonsky (Mon Jul 20 2009 - 16:19:05 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer Stanislav Polonsky (Thu Jul 23 2009 - 10:39:36 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer Axel Kohlmeyer (Thu Jul 23 2009 - 11:23:34 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer Stanislav Polonsky (Thu Jul 23 2009 - 12:21:14 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer Axel Kohlmeyer (Thu Jul 23 2009 - 12:29:49 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer John Stone (Thu Jul 23 2009 - 12:49:24 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer Stanislav Polonsky (Thu Jul 23 2009 - 16:42:37 CDT)
- Problem: VMD 1.8.7 beta 5 does not launch on AIX Stanislav Polonsky (Fri Jul 24 2009 - 08:46:05 CDT)
- Re: Problem: VMD 1.8.7 beta 5 does not launch on AIX Axel Kohlmeyer (Fri Jul 24 2009 - 09:22:09 CDT)
- Re: Problem: VMD 1.8.7 beta 5 does not launch on AIX Stanislav Polonsky (Fri Jul 24 2009 - 13:24:45 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer Stanislav Polonsky (Mon Jul 20 2009 - 11:40:40 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer Axel Kohlmeyer (Mon Jul 20 2009 - 11:36:28 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer John Stone (Mon Jul 20 2009 - 11:29:20 CDT)
- Re PSF file generation karthigeyan karthigeyantp (Mon Jul 20 2009 - 07:34:51 CDT)
- VMD 1.8.7 installation problem Ajeeta kaushiki (Mon Jul 20 2009 - 06:55:41 CDT)
- Problem With Psfgen again avl211_at_lehigh.edu (Fri Jul 17 2009 - 13:53:49 CDT)
- error after changing of PYTHONPATH variable Michael Kreim (Fri Jul 17 2009 - 07:12:52 CDT)
- File conversion for from Amber to Charmm Yogesh Aher (Fri Jul 17 2009 - 04:34:55 CDT)
- Problems with psfgen avl211_at_lehigh.edu (Thu Jul 16 2009 - 16:06:31 CDT)
- algorithm for command *within* BIN ZHANG (Thu Jul 16 2009 - 11:29:43 CDT)
- ied and gypython gurunath katagi (Thu Jul 16 2009 - 02:16:21 CDT)
- A problem on PBC yzliu (Thu Jul 16 2009 - 02:06:34 CDT)
- HETATM records are written as ATOM Thomas Evangelidis (Wed Jul 15 2009 - 16:58:27 CDT)
- Natural WeightL0SS Solution ltrabuco_at_ks.uiuc.edu (Wed Jul 15 2009 - 17:35:35 CDT)
- Can I build a structure by VMD? Lixia Jin Day (Wed Jul 15 2009 - 14:29:01 CDT)
- .xst file disagrees with pbctools/.dcd file - what are the limitations of pbctools? Patrick Kiley (Wed Jul 15 2009 - 05:05:01 CDT)
- python and vmd Jorgen Simonsen (Wed Jul 15 2009 - 04:23:12 CDT)
- scan interleaved stereo on Zalman M220W monitor Sinan Arslan (Tue Jul 14 2009 - 13:11:39 CDT)
- molecule jumps from one site to the other? uu zhu (Mon Jul 13 2009 - 21:11:52 CDT)
- getting other variables out of LAMMPS ascii dump files Dan Lussier (Mon Jul 13 2009 - 13:44:23 CDT)
- Be someone whom you have never been before with DrMaxMan ltrabuco_at_ks.uiuc.edu (Mon Jul 13 2009 - 10:30:41 CDT)
- Problem: I got a runtime error "CthCreate failed to create fiber!". Chuck (Sun Jul 12 2009 - 03:49:44 CDT)
- Need Guidance with pbctools Angelo Rossi (Sat Jul 11 2009 - 13:47:11 CDT)
- residue based CG model Xiang Yu (Fri Jul 10 2009 - 09:20:42 CDT)
- measure rmsf Alison Grinthal (Fri Jul 10 2009 - 08:31:26 CDT)
- A problem on SASA measure yzliu (Fri Jul 10 2009 - 08:12:23 CDT)
- Re: A problem on SASA measure John Stone (Wed Jul 15 2009 - 16:03:25 CDT)
- make movie w/ VMD in SUSE environment Thomas C. Bishop (Thu Jul 16 2009 - 10:55:57 CDT)
- Re: make movie w/ VMD in SUSE environment John Stone (Thu Jul 16 2009 - 11:00:29 CDT)
- Re: make movie w/ VMD in SUSE environment Thomas C. Bishop (Thu Jul 16 2009 - 11:14:15 CDT)
- Re: make movie w/ VMD in SUSE environment John Stone (Thu Jul 16 2009 - 11:27:08 CDT)
- Re: make movie w/ VMD in SUSE environment Axel Kohlmeyer (Thu Jul 16 2009 - 11:40:03 CDT)
- make movie w/ VMD in SUSE environment Thomas C. Bishop (Thu Jul 16 2009 - 10:55:57 CDT)
- Re: A problem on SASA measure John Stone (Wed Jul 15 2009 - 16:03:25 CDT)
- Need GAMESS logfiles for testing VMD's new QM interface saam (Thu Jul 09 2009 - 11:58:08 CDT)
- How to make a selection in atomselect using an element in a list? maria goranovic (Wed Jul 08 2009 - 10:39:39 CDT)
- LES problem Irene Newhouse (Tue Jul 07 2009 - 00:25:20 CDT)
- Make sure girls notice your package petefred_at_ks.uiuc.edu (Sat Jul 04 2009 - 22:12:43 CDT)
- NAMDenergy: problems on changing VMD version/platform Neelanjana Sengupta (Sat Jul 04 2009 - 11:17:44 CDT)
- GPL compatible PluginMgr/vmddlopen Roland Schulz (Sat Jul 04 2009 - 08:13:37 CDT)
- Hardware for NAMD / VMD machine Olve Peersen (Fri Jul 03 2009 - 01:26:11 CDT)
- Be the largest man around petefred_at_ks.uiuc.edu (Thu Jul 02 2009 - 13:35:37 CDT)
- Manunlly Assign Secondary Structure (May Not Be Realistic) John C. H. Chao (Thu Jul 02 2009 - 06:00:07 CDT)
- superimposing proteins based on a few residues Irene Newhouse (Wed Jul 01 2009 - 15:59:33 CDT)
- Some VMD questions Steve Jensen (Tue Jun 30 2009 - 12:27:01 CDT)
- Coloring atoms by a general scalar Heidenreich, Joseph David (Tue Jun 30 2009 - 12:19:29 CDT)
- Funny tcl/tk script behavior.... Alberto Sergio Garay (Tue Jun 30 2009 - 08:02:57 CDT)
- atom name can not exceed four characters in pdb and psf? accomp lin (Mon Jun 29 2009 - 21:59:36 CDT)
- Packed with Antioxidants . Acai Berry. petefred_at_ks.uiuc.edu (Mon Jun 29 2009 - 21:30:17 CDT)
- Oprah certified wieght loss solution Acai.Berri. petefred_at_ks.uiuc.edu (Mon Jun 29 2009 - 19:29:14 CDT)
- GPGPU Programming summer school at University of Tennessee, Aug 10-14. Axel Kohlmeyer (Mon Jun 29 2009 - 14:44:15 CDT)
- running vmd on computer node BIN ZHANG (Mon Jun 29 2009 - 12:55:08 CDT)
- selection update kumar prashanth (Fri Jun 26 2009 - 08:03:21 CDT)
- Problem using pbc wrap..... Alberto Sergio Garay (Fri Jun 26 2009 - 07:13:44 CDT)
- Curious about analytical capabilities of VMD Bjoern Olausson (Fri Jun 26 2009 - 03:48:05 CDT)
- Re: Curious about analytical capabilities of VMD Axel Kohlmeyer (Fri Jun 26 2009 - 07:09:06 CDT)
- Re: Curious about analytical capabilities of VMD Bjoern Olausson (Mon Jun 29 2009 - 05:29:33 CDT)
- Re: Curious about analytical capabilities of VMD Axel Kohlmeyer (Mon Jun 29 2009 - 08:51:01 CDT)
- Re: Curious about analytical capabilities of VMD Bjoern Olausson (Wed Jul 01 2009 - 07:19:39 CDT)
- Re: Curious about analytical capabilities of VMD Axel Kohlmeyer (Fri Jul 03 2009 - 11:04:53 CDT)
- Re: Curious about analytical capabilities of VMD Bjoern Olausson (Mon Jul 06 2009 - 07:10:37 CDT)
- Re: Curious about analytical capabilities of VMD Bjoern Olausson (Mon Jun 29 2009 - 05:29:33 CDT)
- Re: Curious about analytical capabilities of VMD Axel Kohlmeyer (Fri Jun 26 2009 - 07:09:06 CDT)
- constant region selection for animation Dan Lussier (Thu Jun 25 2009 - 09:55:00 CDT)
- Re: regarding positioning of protein molecule Ramya Gamini (Thu Jun 25 2009 - 01:48:07 CDT)
- "no CUDA accelerator devices available", Nvidia GeForce 9600 GT card Low Soo Mei (Wed Jun 24 2009 - 21:44:35 CDT)
- Multimodel PDB files with Different Models? Kevin Wu (Wed Jun 24 2009 - 21:05:30 CDT)
- residue index problem Jianhui Tian (Wed Jun 24 2009 - 15:51:54 CDT)
- trace the distance between center of mass of one certain residue and the other Naiyin Yu (Wed Jun 24 2009 - 14:59:14 CDT)
- Rejecting plugin... Gustavo Seabra (Wed Jun 24 2009 - 14:04:25 CDT)
- vmd error message in Fedora 11 snoze pa (Wed Jun 24 2009 - 11:04:15 CDT)
- Re: vmd error message in Fedora 11 Axel Kohlmeyer (Wed Jun 24 2009 - 12:07:24 CDT)
- vmd 1.8.7 not spawn new console: feature,bug, or just different? Thomas C. Bishop (Wed Jun 24 2009 - 15:08:07 CDT)
- Re: vmd 1.8.7 not spawn new console: feature,bug, or just different? John Stone (Wed Jun 24 2009 - 15:24:32 CDT)
- Re: vmd 1.8.7 not spawn new console: feature,bug, or just different? Olaf Lenz (Thu Jun 25 2009 - 00:52:39 CDT)
- Re: vmd 1.8.7 not spawn new console: feature,bug, or just different? John Stone (Thu Jun 25 2009 - 01:06:02 CDT)
- vmd 1.8.7 not spawn new console: feature,bug, or just different? Thomas C. Bishop (Wed Jun 24 2009 - 15:08:07 CDT)
- Re: vmd error message in Fedora 11 Axel Kohlmeyer (Wed Jun 24 2009 - 12:07:24 CDT)
- bigdcd v3 available. testers needed. Axel Kohlmeyer (Wed Jun 24 2009 - 09:07:14 CDT)
- joystick, win32 simple interface Biff Forbush (Tue Jun 23 2009 - 18:32:57 CDT)
- VMD 1.8.7 beta5 probs with NVIDIA Quadro FX3450/4000 graphic card Baumert, Uwe Dr.rer.nat. (Mon Jun 22 2009 - 04:18:54 CDT)
- Plugins: plz add one more conversion to unit_conversion.h Rob (Sun Jun 21 2009 - 21:00:57 CDT)
- tag heuer rep watch for you; Forest Jefferson (Sat Jun 20 2009 - 05:44:49 CDT)
- porsche design is your style; Fletcher Quick (Thu Jun 18 2009 - 14:18:17 CDT)
- transformation matrix Thomas Evangelidis (Thu Jun 18 2009 - 02:55:52 CDT)
- "Re: ABINIT plugin ready for testing: can read GEO and DEN files. Rob (Thu Jun 18 2009 - 02:27:08 CDT)
- Wrong coordinates using guesscoord in psfgen - lipids poker_at_physics.usyd.edu.au (Wed Jun 17 2009 - 02:30:55 CDT)
- movie maker Alison Grinthal (Tue Jun 16 2009 - 09:44:48 CDT)
- Molscripts Tomek Wlodarski (Tue Jun 16 2009 - 08:54:22 CDT)
- using atomselect to write a set of atoms and not some residue whose residue numbers are in a list maria goranovic (Mon Jun 15 2009 - 10:31:26 CDT)
- "Save coordinates..." silently overwrites existing files... Rob (Mon Jun 15 2009 - 10:25:10 CDT)
- Memory allocation problem kumar prashanth (Mon Jun 15 2009 - 04:06:49 CDT)
- psfgen: auto none not working Ruchi Sachdeva (Mon Jun 15 2009 - 03:57:25 CDT)
- ABINIT plugin ready for testing: can read GEO and DEN files. Rob (Mon Jun 15 2009 - 01:32:28 CDT)
- Re: ABINIT plugin ready for testing: can read GEO and DEN files. John Stone (Mon Jun 15 2009 - 09:52:21 CDT)
- Re: ABINIT plugin ready for testing: can read GEO and DEN files. Axel Kohlmeyer (Mon Jun 15 2009 - 10:18:34 CDT)
- Re: ABINIT plugin ready for testing: can read GEO and DEN files. Rob (Tue Jun 16 2009 - 03:27:28 CDT)
- Re: ABINIT plugin ready for testing: can read GEO and DEN files. Rob (Tue Jun 16 2009 - 21:23:22 CDT)
- Re: ABINIT plugin ready for testing: can read GEO and DEN files. Rob (Wed Jun 17 2009 - 10:59:23 CDT)
- vmdnumpy for IED... Cihan Aydin (Sun Jun 14 2009 - 17:42:36 CDT)
- Ho to save exactly the screen structure? Víctor (Sun Jun 14 2009 - 15:35:55 CDT)
- Tcl commands and X11 craig bullington (Fri Jun 12 2009 - 11:48:37 CDT)
- VMD and X forwarding to MacOS 10.5.7 Benjamin Bouvier (Fri Jun 12 2009 - 09:48:29 CDT)
- Re: VMD and X forwarding to MacOS 10.5.7 John Stone (Fri Jun 12 2009 - 10:02:33 CDT)
- Re: VMD and X forwarding to MacOS 10.5.7 Benjamin Bouvier (Fri Jun 12 2009 - 10:28:17 CDT)
- Re: VMD and X forwarding to MacOS 10.5.7 John Stone (Fri Jun 12 2009 - 10:36:49 CDT)
- Re: VMD and X forwarding to MacOS 10.5.7 Benjamin Bouvier (Fri Jun 12 2009 - 10:45:37 CDT)
- Re: VMD and X forwarding to MacOS 10.5.7 John Stone (Fri Jun 12 2009 - 11:17:22 CDT)
- Re: VMD and X forwarding to MacOS 10.5.7 Benjamin Bouvier (Fri Jun 12 2009 - 11:33:47 CDT)
- Re: VMD and X forwarding to MacOS 10.5.7 John Stone (Wed Jul 15 2009 - 13:48:13 CDT)
- Re: VMD and X forwarding to MacOS 10.5.7 Benjamin Bouvier (Fri Jun 12 2009 - 10:28:17 CDT)
- Re: VMD and X forwarding to MacOS 10.5.7 John Stone (Fri Jun 12 2009 - 10:02:33 CDT)
- FW: Unable to render electrostatic potential cube files with most non-HF densities Whiteside, Alexander (Thu Jun 11 2009 - 08:39:21 CDT)
- vmd cannot be launched after successful installation Stefano Meliga (Wed Jun 10 2009 - 10:58:15 CDT)
- Transparency settings Bjoern Olausson (Wed Jun 10 2009 - 09:13:13 CDT)
- NAMDEnergy Andres Morales N (Wed Jun 10 2009 - 08:59:51 CDT)
- plugin: can I load volumetric data as frames (i.e. timesteps)? Rob (Wed Jun 10 2009 - 03:11:34 CDT)
- Re: plugin: can I load volumetric data as frames (i.e. timesteps)? John Stone (Wed Jun 10 2009 - 07:24:05 CDT)
- Re: plugin: can I load volumetric data as frames (i.e. timesteps)? Ondrej Marsalek (Wed Jun 10 2009 - 07:54:05 CDT)
- NewCartoon not among Drawing methods Stefano Meliga (Wed Jun 10 2009 - 08:48:26 CDT)
- Re: NewCartoon not among Drawing methods John Stone (Wed Jun 10 2009 - 09:49:59 CDT)
- Re: NewCartoon not among Drawing methods Stefano Meliga (Wed Jun 10 2009 - 10:04:09 CDT)
- Re: NewCartoon not among Drawing methods John Stone (Wed Jun 10 2009 - 10:06:53 CDT)
- Re: NewCartoon not among Drawing methods Stefano Meliga (Wed Jun 10 2009 - 10:24:26 CDT)
- Re: NewCartoon not among Drawing methods Stefano Meliga (Wed Jun 10 2009 - 10:36:41 CDT)
- Re: NewCartoon not among Drawing methods John Stone (Wed Jun 10 2009 - 10:44:13 CDT)
- Re: plugin: can I load volumetric data as frames (i.e. timesteps)? John Stone (Wed Jun 10 2009 - 09:43:20 CDT)
- Re: plugin: can I load volumetric data as frames (i.e. timesteps)? Ondrej Marsalek (Wed Jun 10 2009 - 10:09:03 CDT)
- Re: plugin: can I load volumetric data as frames (i.e. timesteps)? John Stone (Wed Jun 10 2009 - 11:12:17 CDT)
- Re: plugin: can I load volumetric data as frames (i.e. timesteps)? Ondrej Marsalek (Wed Jun 10 2009 - 11:28:26 CDT)
- Re: plugin: can I load volumetric data as frames (i.e. timesteps)? Ondrej Marsalek (Wed Jun 10 2009 - 07:54:05 CDT)
- Re: plugin: can I load volumetric data as frames (i.e. timesteps)? Axel Kohlmeyer (Wed Jun 10 2009 - 08:16:58 CDT)
- Re: plugin: can I load volumetric data as frames (i.e. timesteps)? John Stone (Wed Jun 10 2009 - 07:24:05 CDT)
- bonds not created as desired Akemi Matsuno-Yagi (Tue Jun 09 2009 - 13:01:09 CDT)
- Re: Cannot load file for SASA analysis Lili Peng (Mon Jun 08 2009 - 20:39:16 CDT)
- MSMS installation craig bullington (Mon Jun 08 2009 - 14:27:57 CDT)
- crystal eyes vmd Thomas Lemmin (Mon Jun 08 2009 - 08:16:22 CDT)
- Re: crystal eyes vmd Thomas Lemmin (Mon Jun 08 2009 - 08:21:48 CDT)
- Re: Re: crystal eyes vmd John Stone (Mon Jun 08 2009 - 08:43:56 CDT)
- Re: Re: crystal eyes vmd Thomas Lemmin (Mon Jun 08 2009 - 08:54:04 CDT)
- Re: Re: crystal eyes vmd John Stone (Mon Jun 08 2009 - 09:00:54 CDT)
- Re: Re: crystal eyes vmd Thomas Lemmin (Mon Jun 08 2009 - 09:33:07 CDT)
- Re: Re: crystal eyes vmd John Stone (Mon Jun 08 2009 - 09:40:36 CDT)
- Re: Re: crystal eyes vmd Thomas Lemmin (Tue Jun 09 2009 - 08:06:30 CDT)
- Re: Re: crystal eyes vmd John Stone (Tue Jun 09 2009 - 09:47:17 CDT)
- Re: Re: crystal eyes vmd John Stone (Mon Jun 08 2009 - 08:43:56 CDT)
- Re: crystal eyes vmd Thomas Lemmin (Mon Jun 08 2009 - 08:21:48 CDT)
- atom selection Deepti Mishra (Sun Jun 07 2009 - 23:32:43 CDT)
- NAMDEnergy Andres Morales N (Sun Jun 07 2009 - 15:24:33 CDT)
- NAMDEnergy Andres Morales N (Sun Jun 07 2009 - 15:23:35 CDT)
- Building LPS membrane dipti lele (Sun Jun 07 2009 - 00:35:50 CDT)
- Vector corresponding to the long axis Navendu bhatnagar (Fri Jun 05 2009 - 17:26:16 CDT)
- disulphide bond formation gurunath katagi (Fri Jun 05 2009 - 10:14:11 CDT)
- debugging tool for atomselect Axel Kohlmeyer (Thu Jun 04 2009 - 17:05:10 CDT)
- Memory Problem with tcl/tk script...(Solved!) Alberto Sergio Garay (Thu Jun 04 2009 - 07:08:19 CDT)
- Energy Andres Morales N (Wed Jun 03 2009 - 21:50:41 CDT)
- Memory Problem with tcl/tk script...(3) Alberto Sergio Garay (Wed Jun 03 2009 - 14:17:07 CDT)
- Memory Problem with tcl/tk script...(2) Alberto Sergio Garay (Wed Jun 03 2009 - 12:54:53 CDT)
- vmd 1.8.7 - problems loading vmd state file lucie delemotte (Tue Jun 02 2009 - 10:31:26 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file John Stone (Tue Jun 02 2009 - 10:39:18 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file lucie delemotte (Tue Jun 02 2009 - 10:48:19 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file John Stone (Tue Jun 02 2009 - 11:15:39 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file lucie delemotte (Tue Jun 02 2009 - 11:42:38 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file John Stone (Tue Jun 02 2009 - 14:01:12 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file lucie delemotte (Wed Jun 03 2009 - 02:36:51 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file Axel Kohlmeyer (Wed Jun 03 2009 - 08:16:06 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file John Stone (Wed Jun 03 2009 - 14:05:48 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file John Stone (Fri Jun 05 2009 - 11:04:08 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file John Stone (Mon Jun 08 2009 - 16:15:15 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file John Stone (Tue Jun 09 2009 - 09:48:41 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file John Stone (Tue Jun 09 2009 - 11:26:01 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file John Stone (Thu Jun 11 2009 - 08:59:54 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file John Stone (Thu Jun 11 2009 - 21:30:22 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file Marius Retegan (Fri Jun 12 2009 - 08:47:39 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file John Stone (Fri Jun 12 2009 - 09:44:29 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file lucie delemotte (Fri Jun 12 2009 - 11:17:35 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file lucie delemotte (Tue Jun 02 2009 - 10:48:19 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file John Stone (Tue Jun 02 2009 - 10:39:18 CDT)
- APBS error : Cannot read output file Navendu bhatnagar (Tue Jun 02 2009 - 09:51:01 CDT)
- VMD HOLE Result Hyundeok Song (Tue Jun 02 2009 - 08:49:20 CDT)
- Memory Problem with tcl/tk script... Alberto Sergio Garay (Tue Jun 02 2009 - 07:25:16 CDT)
- adding atoms to empty molecules Thomas Evangelidis (Mon Jun 01 2009 - 13:47:07 CDT)
- VMD 1.8.7 Beta 5 -- Possible bug when typing in the VMD menu boxes. JT (Mon Jun 01 2009 - 17:29:07 CDT)
- VMD 1.8.7 beta 5 posted for download John Stone (Mon Jun 01 2009 - 16:11:31 CDT)
- Accelerating your VMD 1.8.7 calculations with an NVIDIA Tesla GPU Jacob Story (Mon Jun 01 2009 - 09:20:22 CDT)
- Linking to molfile_plugin libraries David Tanner (Fri May 29 2009 - 13:02:59 CDT)
- Macbook and VMD Tk windows madura_at_duq.edu (Fri May 29 2009 - 06:49:08 CDT)
- VMD crash snoze pa (Thu May 28 2009 - 14:45:10 CDT)
- Re: [lammps-users] LAMMPS to VMD: lmp2vmd tool Axel Kohlmeyer (Thu May 28 2009 - 10:31:42 CDT)
- problem with dispdev KIRTANA S (Wed May 27 2009 - 15:59:41 CDT)
- main window missing? BIN ZHANG (Wed May 27 2009 - 15:17:40 CDT)
- Need testers for VMD/Tachyon volumetric coloring feature :-) John Stone (Wed May 27 2009 - 14:37:59 CDT)
- Angles in psf file KIRTANA S (Tue May 26 2009 - 15:05:20 CDT)
- Re: new problem John Stone (Tue May 26 2009 - 11:05:07 CDT)
- Heat capacity zizi moradi (Sun May 24 2009 - 16:39:45 CDT)
- Isosurface and Fieldlines Not rendered in colour Burak Cankurtaran (Tue May 26 2009 - 00:15:44 CDT)
- Plugin: molfile_plugin_t filename_extension; problem and bug... Rob (Sun May 24 2009 - 22:39:33 CDT)
- VMD crashes in VolumeSlice representation Suman Chakrabarty (Sun May 24 2009 - 13:09:10 CDT)
- Problem in loading data Jae Hyun Park (Sun May 24 2009 - 10:38:24 CDT)
- "Determine file type" list is far too long... Rob (Sun May 24 2009 - 04:45:30 CDT)
- solvent accessible surface area zizi moradi (Sat May 23 2009 - 13:11:19 CDT)
- Offset for frame ids in dcd trajectory DimitryASuplatov (Sat May 23 2009 - 11:11:09 CDT)
- Operations with MD frames - acquiring time infromation DimitryASuplatov (Sat May 23 2009 - 08:16:37 CDT)
- Question3 about introducing variables in "mol selection..." Alberto Sergio Garay (Fri May 22 2009 - 16:47:25 CDT)
- Question2 about introducing variables in "mol selection..." Alberto Sergio Garay (Fri May 22 2009 - 15:31:51 CDT)
- Question about introducing variables in "mol selection..." Alberto Sergio Garay (Fri May 22 2009 - 10:06:54 CDT)
- abinit plugin for VMD not yet tried? Rob (Fri May 22 2009 - 02:08:15 CDT)
- bonds in .psf file KIRTANA S (Thu May 21 2009 - 12:32:35 CDT)
- angles and dihedrals in .psf file KIRTANA S (Thu May 21 2009 - 10:45:51 CDT)
- RMSF Maria Sanchez (Wed May 20 2009 - 23:14:17 CDT)
- pdb file generated not readable by tleap Yi Shang (Wed May 20 2009 - 14:49:26 CDT)
- Re: Distance between COM for 2 chains for each frame of trajectory Axel Kohlmeyer (Wed May 20 2009 - 14:05:27 CDT)
- Distance between COM for 2 chains for each frame of trajectory Florentina Tofoleanu (Wed May 20 2009 - 11:34:18 CDT)
- how to load a state from the command line maria goranovic (Wed May 20 2009 - 09:21:13 CDT)
- VMD 1.8.7b3 and desktop effects on Fedora 10 Nicolas Sapay (Wed May 20 2009 - 07:48:33 CDT)
- default colors MyLinkka (Wed May 20 2009 - 07:11:35 CDT)
- Why is the 'antialias' option is grey? MyLinkka (Wed May 20 2009 - 05:37:47 CDT)
- Request for change in gaussian cube reader Xavier Cartoixa Soler (Tue May 19 2009 - 13:40:37 CDT)
- NVidia GeForce 3D Vision Christoph Weber (Tue May 19 2009 - 12:38:08 CDT)
- Align mistake Andres Morales N (Tue May 19 2009 - 11:14:21 CDT)
- Average strcuture Andres Morales N (Tue May 19 2009 - 08:51:23 CDT)
- New vmd Windows version crash MyLinkka (Tue May 19 2009 - 05:14:34 CDT)
- Re: New vmd Windows version crash John Stone (Tue May 19 2009 - 21:02:57 CDT)
- Adding two separate pdb files: Lipid Bilayer's with Protein's Lalit (Mon May 18 2009 - 18:07:34 CDT)
- VMD 1.8.7 beta 3 posted for download... John Stone (Mon May 18 2009 - 15:24:21 CDT)
- Model building questions YangMingjun (Mon May 18 2009 - 08:14:38 CDT)
- VMD as a python module Ondrej Marsalek (Mon May 18 2009 - 04:45:39 CDT)
- resolved [Re: vmd / python / f10] Cameron Mura (Sun May 17 2009 - 19:07:47 CDT)
- vmd / python / f10 Cameron Mura (Sat May 16 2009 - 18:43:18 CDT)
- Change requested in lammps plugin for VMD Gopinath Subramanian (Fri May 15 2009 - 11:42:38 CDT)
- adding bonds with the mouse and writing psf Maxim Paliy. (Thu May 14 2009 - 20:01:40 CDT)
- a small bug in solvate 1.3 Maxim Paliy. (Thu May 14 2009 - 19:06:32 CDT)
- solvate v1.3 bug Íő—˛ (Thu May 14 2009 - 07:43:23 CDT)
- How to color atom by charge loc duong ding (Thu May 14 2009 - 00:46:38 CDT)
- Translate Andres Morales N (Wed May 13 2009 - 22:25:22 CDT)
- Color problem. knowlesc_at_msu.edu (Wed May 13 2009 - 13:55:31 CDT)
- Can bonds radius be controlled by tcl command? accomp lin (Wed May 13 2009 - 03:54:47 CDT)
- VMD 1.8.7 beta 2 posted for download John Stone (Wed May 13 2009 - 14:09:40 CDT)
- Axes Andres Morales N (Wed May 13 2009 - 08:42:45 CDT)
- Sphere representaion with radius from pdb field "occupancy" or "temp. fac" Thomas Zauner (Wed May 13 2009 - 05:08:50 CDT)
- Alignment Andres Morales N (Mon May 11 2009 - 21:44:55 CDT)
- selecting waters Mark M Huntress (Mon May 11 2009 - 12:35:10 CDT)
- calculate charges of the binding site residues with psfgen Thomas Evangelidis (Sat May 09 2009 - 22:54:16 CDT)
- How to compute excluded volume using volmap? Suman Chakrabarty (Sat May 09 2009 - 14:46:31 CDT)
- Paratool:Problems to load Hessian for charge distribution Sabine Leroch (Fri May 08 2009 - 11:12:05 CDT)
- volmap question Jian Dai (Fri May 08 2009 - 01:22:22 CDT)
- Thiol on gold KIRTANA S (Thu May 07 2009 - 23:57:48 CDT)
- vmd-read data from lammps H Q (Thu May 07 2009 - 20:26:53 CDT)
- namdenergy BIN ZHANG (Thu May 07 2009 - 17:26:23 CDT)
- BMP snapshot Tawhid Ezaz (Thu May 07 2009 - 14:04:58 CDT)
- Display not updated when using move() from Python in VMD 1.8.6 Pawel Kedzierski (Wed May 06 2009 - 13:50:47 CDT)
- Re: Display not updated when using move() from Python in VMD 1.8.6 Axel Kohlmeyer (Wed May 06 2009 - 18:18:54 CDT)
- calculate charges of the binding site residues with psfgen Thomas Evangelidis (Wed May 06 2009 - 20:19:54 CDT)
- Re: Display not updated when using move() from Python in VMD 1.8.6 Pawel Kedzierski (Thu May 07 2009 - 07:31:25 CDT)
- Re: Display not updated when using move() from Python in VMD 1.8.6 Axel Kohlmeyer (Thu May 07 2009 - 09:44:06 CDT)
- Re: Display not updated when using move() from Python in VMD 1.8.6 John Stone (Thu May 07 2009 - 10:19:09 CDT)
- Re: Display not updated when using move() from Python in VMD 1.8.6 Axel Kohlmeyer (Thu May 07 2009 - 10:45:00 CDT)
- Re: Display not updated when using move() from Python in VMD 1.8.6 Axel Kohlmeyer (Wed May 06 2009 - 18:18:54 CDT)
- memory allocation issue Edward Lyman (Wed May 06 2009 - 13:37:04 CDT)
- Postdoc position in computational biophysics and nanotehnology Aleksei Aksimentiev (Tue May 05 2009 - 14:28:20 CDT)
- Satellite tobacco mosaic virus images making by VMD ÖÜÎIJý (Tue May 05 2009 - 08:31:33 CDT)
- VMD 1.8.7beta1 doesn't close OpenGL window Olaf Lenz (Tue May 05 2009 - 07:53:57 CDT)
- Solvation energies using implicit ligand sampling Richard Daigle (Mon May 04 2009 - 12:21:41 CDT)
- VMD on Cray/CNL Jim Pfaendtner (Fri May 01 2009 - 01:03:07 CDT)
- autopfs: unknown atom type error when processing ATP Sasha Buzko (Thu Apr 30 2009 - 16:13:41 CDT)
- Re: autopfs: unknown atom type error when processing ATP Peter Freddolino (Thu Apr 30 2009 - 16:30:30 CDT)
- Re: autopfs: unknown atom type error when processing ATP Sasha Buzko (Thu Apr 30 2009 - 16:38:51 CDT)
- Re: autopfs: unknown atom type error when processing ATP Peter Freddolino (Thu Apr 30 2009 - 16:52:18 CDT)
- Re: autopfs: unknown atom type error when processing ATP Sasha Buzko (Fri May 01 2009 - 11:39:11 CDT)
- Re: autopfs: unknown atom type error when processing ATP Peter Freddolino (Fri May 01 2009 - 22:31:52 CDT)
- Re: autopfs: unknown atom type error when processing ATP Sasha Buzko (Sat May 02 2009 - 14:17:25 CDT)
- NAMD setup for organic compounds Sasha Buzko (Thu Jul 09 2009 - 11:46:48 CDT)
- Re: NAMD setup for organic compounds Peter Freddolino (Thu Jul 09 2009 - 19:07:56 CDT)
- Re: NAMD setup for organic compounds Sasha Buzko (Thu Jul 09 2009 - 19:17:09 CDT)
- Re: autopfs: unknown atom type error when processing ATP Sasha Buzko (Thu Apr 30 2009 - 16:38:51 CDT)
- Re: autopfs: unknown atom type error when processing ATP Peter Freddolino (Thu Apr 30 2009 - 16:30:30 CDT)
- Selection "@myselection" Olaf Lenz (Thu Apr 30 2009 - 04:25:05 CDT)
- Size of a protein Khaled Barakat (Wed Apr 29 2009 - 16:06:31 CDT)
- VMD 1.8.7 beta 1 posted for download... John Stone (Wed Apr 29 2009 - 15:06:27 CDT)
- hydrogen bonds tcl script politr_at_huji.ac.il (Tue Apr 28 2009 - 09:40:12 CDT)
- Installation issue Hugh Martin (Tue Apr 28 2009 - 08:09:04 CDT)
- Can the CG model built from VMD be used as an Input of NAMD,GROMACS and any other MD program? wuxiao (Tue Apr 28 2009 - 02:52:44 CDT)
- Manipulating dcd using script in VMD DimitryASuplatov (Tue Apr 28 2009 - 01:26:05 CDT)
- Molefacture "namehead" error Sebastián Gutiérrez (Mon Apr 27 2009 - 16:43:10 CDT)
- Calculating system net charge with tcl in VMD DimitryASuplatov (Mon Apr 27 2009 - 04:43:34 CDT)
- Re: Calculating system net charge with tcl in VMD Athanassios Stavrakoudis (Mon Apr 27 2009 - 05:12:18 CDT)
- Re: Calculating system net charge with tcl in VMD Peter Freddolino (Mon Apr 27 2009 - 07:02:18 CDT)
- Re: Calculating system net charge with tcl in VMD Eduardo Cruz-Chu (Mon Apr 27 2009 - 10:50:01 CDT)
- Using clustering tool Andres Morales N (Fri Apr 24 2009 - 22:56:48 CDT)
- iTrajComp plugin. Andres Morales N (Fri Apr 24 2009 - 22:23:45 CDT)
- graphics for publication YangMingjun (Fri Apr 24 2009 - 10:14:23 CDT)
- Error processing bonds Gianluca Interlandi (Fri Apr 24 2009 - 01:41:07 CDT)
- local packing density around a chemical group (say, a methyl group or a side chain) Krishnan, Marimuthu (Thu Apr 23 2009 - 10:15:44 CDT)
- installed plugin won't show up next time accomp lin (Thu Apr 23 2009 - 06:58:38 CDT)
- animate read and write A D (Wed Apr 22 2009 - 15:36:00 CDT)
- density profiles Raul Araya (Wed Apr 22 2009 - 11:24:31 CDT)
- Select atoms using coordinates Max (Wed Apr 22 2009 - 06:09:16 CDT)
- sys.argv, python and VMD Michael Kreim (Wed Apr 22 2009 - 03:50:59 CDT)
- setbonds BIN ZHANG (Tue Apr 21 2009 - 23:01:35 CDT)
- Spaceball and OSX JT (Tue Apr 21 2009 - 12:30:04 CDT)
- Secondary Structure Depiction Daniel Gaston (Tue Apr 21 2009 - 09:25:08 CDT)
- Re: Secondary Structure Depiction L. Michel Espinoza-Fonseca (Tue Apr 21 2009 - 10:33:50 CDT)
- Re: Secondary Structure Depiction John Stone (Tue Apr 21 2009 - 10:51:48 CDT)
- Mol representation using coordinates Max (Tue Apr 21 2009 - 08:50:05 CDT)
- RMSD-gaps Karne, Sai Harish Babu (Mon Apr 20 2009 - 17:09:51 CDT)
- Solvent Accessible Surface Area zizi moradi (Sun Apr 19 2009 - 09:01:49 CDT)
- (no subject) zizi moradi (Sun Apr 19 2009 - 08:55:44 CDT)
- Possible bug in vmd 1.8.7 alpha? Cesar Millan (Sat Apr 18 2009 - 00:09:57 CDT)
- coloring by atom type Ryan Pavlovicz (Fri Apr 17 2009 - 15:53:29 CDT)
- Re: namd-l: display all frames simultaneously Samuel Coulbourn Flores 花山 (Fri Apr 17 2009 - 11:35:11 CDT)
- pbctools on alpha version Dan Lussier (Fri Apr 17 2009 - 09:05:06 CDT)
- psf file for Doxorubicin mishacat_at_udm.ru (Thu Apr 16 2009 - 08:32:14 CDT)
- Multiseq error Karne, Sai Harish Babu (Wed Apr 15 2009 - 13:48:18 CDT)
- VRPN & PHANToM Omni Mark Cunningham (Wed Apr 15 2009 - 13:40:03 CDT)
- Problem in finding the HBonds Manishi Pandey (Wed Apr 15 2009 - 02:50:29 CDT)
- (no subject) Narasimhan LOGANATHAN (Tue Apr 14 2009 - 04:33:39 CDT)
- RMSD of a protein shell, from the NAMD traj priyodorshi satpati (Sun Apr 12 2009 - 11:02:13 CDT)
- within, used with pbcwrap Neelanjana Sengupta (Fri Apr 10 2009 - 06:35:19 CDT)
- install plugin: problems with vmd_install_extension Steve Massard (Fri Apr 10 2009 - 04:35:45 CDT)
- Release of R.E.D. Server FyD (Thu Apr 09 2009 - 03:31:30 CDT)
- isosurface saving question YI Zhang (Tue Apr 07 2009 - 20:41:17 CDT)
- about TkConsole cong chen (Mon Apr 06 2009 - 23:16:19 CDT)
- Any Mac (Intel) users still running 10.4.x??? John Stone (Sun Apr 05 2009 - 10:13:08 CDT)
- OS X intel binary problem Dan Lussier (Sun Apr 05 2009 - 03:02:20 CDT)
- (no subject) Crowley, Michael (Sun Apr 05 2009 - 00:48:58 CDT)
- ligand names Katherine Parra (Fri Apr 03 2009 - 10:35:54 CDT)
- questions about the electron density map YI Zhang (Fri Apr 03 2009 - 05:38:54 CDT)
- Problem with autoionize ? Kalavera_at_gmx.net (Thu Apr 02 2009 - 08:50:49 CDT)
- H-bonds Bernhard Knapp (Thu Apr 02 2009 - 06:27:25 CDT)
- VMD atomselect Steve Massard (Thu Apr 02 2009 - 05:57:37 CDT)
- pairInteraction and NAMDEnergy Goutham (Wed Apr 01 2009 - 17:05:52 CDT)
- paratool questions Lisa Brown (Tue Mar 31 2009 - 15:25:00 CDT)
- pKa and Temperature in MD Caterina Bernini (Tue Mar 31 2009 - 14:47:39 CDT)
- Re: vmd cvs compilation with CUDA fails John Stone (Tue Mar 31 2009 - 14:26:31 CDT)
- Re: cvs plugins do not compile because of errors in the sgsmooth.C John Stone (Tue Mar 31 2009 - 13:34:05 CDT)
- helix axes Alison Grinthal (Tue Mar 31 2009 - 07:34:56 CDT)
- Re: helix axes Thomas C. Bishop (Tue Mar 31 2009 - 09:44:21 CDT)
- Re: helix axes Peter Freddolino (Tue Mar 31 2009 - 09:51:11 CDT)
- Re: helix axes Thomas C. Bishop (Tue Mar 31 2009 - 10:08:51 CDT)
- Re: helix axes Peter Freddolino (Tue Mar 31 2009 - 10:18:06 CDT)
- Re: helix axes Thomas C. Bishop (Tue Mar 31 2009 - 12:15:00 CDT)
- Re: helix axes Peter Freddolino (Tue Mar 31 2009 - 12:16:57 CDT)
- Re: helix axes Balazs Jojart (Tue Mar 31 2009 - 14:28:40 CDT)
- Re: helix axes Goutham (Tue Mar 31 2009 - 10:30:30 CDT)
- Re: helix axes Peter Freddolino (Tue Mar 31 2009 - 09:51:11 CDT)
- RE: helix axes Wei Huang (Tue Mar 31 2009 - 10:06:20 CDT)
- Re: helix axes Thomas C. Bishop (Tue Mar 31 2009 - 09:44:21 CDT)
- How to add heme to dowser plugin? Irene Newhouse (Mon Mar 30 2009 - 19:27:01 CDT)
- selection syntax Peter Jones (Mon Mar 30 2009 - 01:54:32 CDT)
- Graphical representation Francesco Pietra (Sun Mar 29 2009 - 13:59:15 CDT)
- Synchronization of statements in tcl script Raluca Mihaela ANDREI (Fri Mar 27 2009 - 12:44:32 CDT)
- openGL library Goutham (Thu Mar 26 2009 - 19:48:52 CDT)
- Searching for Number of Resname Ocar Campos (Thu Mar 26 2009 - 14:51:44 CDT)
- howto select stain reveal map Francesco Pietra (Thu Mar 26 2009 - 02:30:29 CDT)
- how to make a mivie by VMD Lan He (Wed Mar 25 2009 - 17:33:41 CDT)
- merging atomselection Goutham (Wed Mar 25 2009 - 16:54:33 CDT)
- how to block psfgen warning messages Thomas Evangelidis (Wed Mar 25 2009 - 16:11:12 CDT)
- Rosetta Academic Training Webinar Nir London (Wed Mar 25 2009 - 11:10:34 CDT)
- Command line argument Goutham (Wed Mar 25 2009 - 10:12:19 CDT)
- External renderer not rendering colors from volumetric data Höfling Martin (Wed Mar 25 2009 - 08:34:24 CDT)
- vmd_plot Francesco Pietra (Wed Mar 25 2009 - 06:16:36 CDT)
- GTP topology file tiziano gallo cassarino (Fri Mar 20 2009 - 08:54:12 CDT)
- near clip Leandro Martínez (Fri Mar 20 2009 - 07:48:51 CDT)
- VMD 1.8.7 alpha 62 posted for all mainstream platforms... John Stone (Fri Mar 20 2009 - 03:30:48 CDT)
- accessing values for selection keywords Nadja Lederer (Wed Mar 18 2009 - 05:48:43 CDT)
- accessing values for selection keywords Nadja Lederer (Wed Mar 18 2009 - 05:25:54 CDT)
- building VMD on LINUX Raluca Mihaela ANDREI (Tue Mar 17 2009 - 06:51:51 CDT)
- paratool tutorial/ complete user guide Lisa Brown (Mon Mar 16 2009 - 14:43:49 CDT)
- VMD needs your vote. Nir London (Mon Mar 16 2009 - 12:21:07 CDT)
- Posting messages to VMD-L truncates the empty spaces in lines JT (Sun Mar 15 2009 - 18:58:01 CDT)
- Re: Posting messages to VMD-L truncates the empty spaces in lines John Stone (Mon Mar 16 2009 - 17:49:34 CDT)
- Re: Posting messages to VMD-L truncates the empty spaces in lines JT (Mon Mar 16 2009 - 20:31:09 CDT)
- Re: Posting messages to VMD-L truncates the empty spaces in lines John Stone (Mon Mar 16 2009 - 20:41:58 CDT)
- Re: Posting messages to VMD-L truncates the empty spaces in lines JT (Tue Mar 17 2009 - 22:05:43 CDT)
- Re: Posting messages to VMD-L truncates the empty spaces in lines Rogan Carr (Wed Mar 18 2009 - 16:12:37 CDT)
- Re: Posting messages to VMD-L truncates the empty spaces in lines JT (Mon Mar 16 2009 - 20:31:09 CDT)
- Re: Posting messages to VMD-L truncates the empty spaces in lines John Stone (Mon Mar 16 2009 - 17:49:34 CDT)
- rlwrap bug in Ubuntu Thomas Evangelidis (Sun Mar 15 2009 - 01:11:30 CDT)
- how to find the sign of the dihedral angle (full message). karthigeyan karthigeyantp (Sat Mar 14 2009 - 00:23:47 CDT)
- isosurface from pdb with beta field Peter Varnai (Fri Mar 13 2009 - 16:09:33 CDT)
- Problem with the script mono2poly.tcl Fabio Trovato (Fri Mar 13 2009 - 11:46:44 CDT)
- color update for xyz trajectory Tawhid Ezaz (Thu Mar 12 2009 - 14:52:14 CDT)
- question of iso-surface in VMD graphical representations HeeSung Choi (Thu Mar 12 2009 - 13:04:01 CDT)
- Script problem Christopher Hartshorn (Thu Mar 12 2009 - 03:40:50 CDT)
- pops/popc lipid bilayer Jianping Lin (Wed Mar 11 2009 - 19:32:42 CDT)
- How to use " segment " in tcl script. accomp lin (Wed Mar 11 2009 - 01:31:13 CDT)
- obj export Raluca Mihaela ANDREI (Tue Mar 10 2009 - 03:27:40 CDT)
- regarding draw_arrow.tcl Falgun Shah (Mon Mar 09 2009 - 17:55:58 CDT)
- (no subject) Leonhard Henkes (Mon Mar 09 2009 - 07:08:32 CDT)
- vmd crashes bo baker (Mon Mar 09 2009 - 04:49:42 CDT)
- motion correlation map Falgun Shah (Sun Mar 08 2009 - 12:41:18 CDT)
- charmm binary ele. pot. Jure Praznikar (Sun Mar 08 2009 - 11:36:47 CDT)
- the scripting interface Dawn (Sun Mar 08 2009 - 10:00:19 CDT)
- correlation Dawn (Sun Mar 08 2009 - 03:05:49 CDT)
- problem with Dowser Irene Newhouse (Sat Mar 07 2009 - 19:50:35 CST)
- Save thousands... no one will know Olivia Reilly (Sat Mar 07 2009 - 11:23:52 CST)
- Your C0deine 0rder #247424 Fran Villa (Fri Mar 06 2009 - 19:51:11 CST)
- Charm force field for POPS lipid Jianping Lin (Fri Mar 06 2009 - 15:56:34 CST)
- Re: adding lipid bilayers Ramya Gamini (Fri Mar 06 2009 - 02:06:17 CST)
- adding lipid bilayers Goutham (Fri Mar 06 2009 - 00:46:47 CST)
- use of spring tcl script Falgun Shah (Thu Mar 05 2009 - 20:49:30 CST)
- Script for calculating hydrogen-bonding energy Jianping Lin (Thu Mar 05 2009 - 19:19:28 CST)
- Hydrophobicity Scale Goutham (Thu Mar 05 2009 - 18:58:41 CST)
- Re: selection by residue Marius Retegan (Thu Mar 05 2009 - 08:29:28 CST)
- selection by residue Marius Retegan (Thu Mar 05 2009 - 06:47:53 CST)
- Seventh European Workshop in Drug Design - Siena Lucilla Angeli (Thu Mar 05 2009 - 06:42:36 CST)
- script to resolve trajectory "jumps" on Desmond dynamic Nicola Giacche' (Wed Mar 04 2009 - 10:15:03 CST)
- Problem in IMD with Compiled VMD Amr Rizq (Wed Mar 04 2009 - 06:00:58 CST)
- OpenGL Window Max (Wed Mar 04 2009 - 05:16:54 CST)
- How to convert DCD file into Amber trajectory file in vmd Jianping Lin (Tue Mar 03 2009 - 17:30:33 CST)
- Re: How to convert DCD file into Amber trajectory file in vmd John Stone (Tue Mar 03 2009 - 18:35:31 CST)
- Re: How to convert DCD file into Amber trajectory file in vmd Jianping Lin (Wed Mar 04 2009 - 11:41:14 CST)
- Display issue on VMD for Linux Samuel Coulbourn Flores 花山 (Wed Mar 04 2009 - 19:43:59 CST)
- Re: Display issue on VMD for Linux Axel Kohlmeyer (Wed Mar 04 2009 - 21:55:04 CST)
- Re: Display issue on VMD for Linux Samuel Coulbourn Flores 花山 (Thu Mar 12 2009 - 16:54:11 CDT)
- Re: Display issue on VMD for Linux John Stone (Thu Mar 12 2009 - 17:02:21 CDT)
- Re: How to convert DCD file into Amber trajectory file in vmd Jianping Lin (Wed Mar 04 2009 - 11:41:14 CST)
- Re: How to convert DCD file into Amber trajectory file in vmd John Stone (Tue Mar 03 2009 - 18:35:31 CST)
- displaying residues within 5 A of ligand in vmd Falgun Shah (Tue Mar 03 2009 - 09:53:29 CST)
- Outline rendering style with Tachyon Heikki Kasnanen (Tue Mar 03 2009 - 02:20:08 CST)
- rmsd computation in text mode with a reference pdb Monika Sharma (Mon Mar 02 2009 - 01:18:30 CST)
- select atoms bo baker (Sun Mar 01 2009 - 22:18:42 CST)
- images for publication Falgun Shah (Sun Mar 01 2009 - 15:23:12 CST)
- Re: delete residues from trajectory bo baker (Sat Feb 28 2009 - 23:06:17 CST)
- paratool: gaussian output error Falgun Shah (Sat Feb 28 2009 - 17:15:25 CST)
- delete residues from trajectory bo baker (Sat Feb 28 2009 - 03:46:20 CST)
- delete residues from trajectory bo baker (Sat Feb 28 2009 - 03:44:06 CST)
- vmd error related to opengl FyD (Fri Feb 27 2009 - 18:12:02 CST)
- problem while integrating bigdcd into a namespace Thomas Evangelidis (Fri Feb 27 2009 - 16:19:03 CST)
- wrong bonds during loading pdb file(protein plus lipids) Nikolay Simakov (Fri Feb 27 2009 - 16:01:30 CST)
- Re: wrong bonds during loading pdb file(protein plus lipids) John Stone (Fri Feb 27 2009 - 16:23:19 CST)
- Re: wrong bonds during loading pdb file(protein plus lipids) Nikolay Simakov (Fri Feb 27 2009 - 20:07:52 CST)
- Re: wrong bonds during loading pdb file(protein plus lipids) Axel Kohlmeyer (Fri Feb 27 2009 - 20:47:32 CST)
- Re: wrong bonds during loading pdb file(protein plus lipids) Nikolay Simakov (Fri Feb 27 2009 - 21:24:13 CST)
- Re: wrong bonds during loading pdb file(protein plus lipids) Axel Kohlmeyer (Fri Feb 27 2009 - 22:01:19 CST)
- Re: wrong bonds during loading pdb file(protein plus lipids) John Stone (Mon Mar 02 2009 - 11:15:27 CST)
- Re: wrong bonds during loading pdb file(protein plus lipids) Nikolay Simakov (Fri Feb 27 2009 - 20:07:52 CST)
- Re: wrong bonds during loading pdb file(protein plus lipids) John Stone (Fri Feb 27 2009 - 16:23:19 CST)
- (no subject) Irene Newhouse (Fri Feb 27 2009 - 14:08:30 CST)
- draw command with different material BIN ZHANG (Thu Feb 26 2009 - 23:31:08 CST)
- proline trans to cis Roman Petrenko (Thu Feb 26 2009 - 19:20:07 CST)
- Does command "animate delete all" free memory? Fred (Rui FENG) (Thu Feb 26 2009 - 15:00:53 CST)
- Displaying local water molecules throughout trajectory ben rodriguez (Thu Feb 26 2009 - 14:47:26 CST)
- Weighted RMS fit bug Jumper, John (Thu Feb 26 2009 - 12:21:15 CST)
- MM/PBSA in VMD Jianping Lin (Thu Feb 26 2009 - 12:12:46 CST)
- Help: Installation Problem Lee Amy (Wed Feb 25 2009 - 09:45:12 CST)
- to get angle from matrix of rotation around an axis Yinglong Miao (Wed Feb 25 2009 - 14:55:27 CST)
- volmap masks Dan Willenbring (Wed Feb 25 2009 - 14:17:32 CST)
- embed VMD in web page Xunlei Wu (Wed Feb 25 2009 - 11:21:39 CST)
- charm27 forcefield_topology Falgun Shah (Wed Feb 25 2009 - 11:02:02 CST)
- question about "measure dihed" with COM points Lee, Hwan Kyu (NIH/NHLBI) [E] (Tue Feb 24 2009 - 19:09:27 CST)
- Re: question about "measure dihed" with COM points Axel Kohlmeyer (Tue Feb 24 2009 - 19:51:15 CST)
- Re: question about "measure dihed" with COM points J T (Tue Feb 24 2009 - 21:37:21 CST)
- Test Lee Amy (Tue Feb 24 2009 - 07:48:25 CST)
- info for computational chemistry awards, please forward Carlos Simmerling (Fri Feb 20 2009 - 10:22:27 CST)
- Adding a Water Box Mohamed Seyam (Mon Feb 23 2009 - 17:36:14 CST)
- FATAL ERROR: ABNORMAL EOF FOUND - buffer=*0 0* Chuck (Mon Feb 23 2009 - 15:52:05 CST)
- Can you show me an example of the .xyz file that is used to calculate the IR spectrum Shuo Li (Mon Feb 23 2009 - 14:05:15 CST)
- Membrane builder ?'s Christopher Hartshorn (Mon Feb 23 2009 - 13:09:16 CST)
- passing arguments to a vmd script which is executed using play or source mariagoranovic_at_gmail.com (Mon Feb 23 2009 - 04:24:14 CST)
- multiple colors for a single atom BIN ZHANG (Mon Feb 23 2009 - 00:05:50 CST)
- Is there a way to add custormized representation method to VMD Yang, Shaorui (Sun Feb 22 2009 - 22:42:19 CST)
- VMD exits immediately after starting on Windows xp Robert Mullen (Sun Feb 22 2009 - 17:35:46 CST)
- a way to create a nice image politr_at_huji.ac.il (Sat Feb 21 2009 - 08:36:44 CST)
- transparent background James Rustad (Fri Feb 20 2009 - 13:55:55 CST)
- converting trajectory files with catdcd in command line Luciano Costa (Fri Feb 20 2009 - 06:31:00 CST)
- vmd intel compiler prebuild for 64 bit Roman Petrenko (Thu Feb 19 2009 - 19:29:09 CST)
- Unrecognized Chains in VMD for tetrameric protein ben rodriguez (Thu Feb 19 2009 - 18:14:55 CST)
- SMD question Edward Lyman (Thu Feb 19 2009 - 14:00:32 CST)
- "pbcwithin" keyword Thomas Evangelidis (Thu Feb 19 2009 - 09:29:37 CST)
- making .psf file based on .gro or .pdb Hideya Nakamura (Tue Feb 17 2009 - 18:19:18 CST)
- vmd with cuda1.0 Roman Petrenko (Mon Feb 16 2009 - 21:47:16 CST)
- change cylinder surface properties Peter Varnai (Mon Feb 16 2009 - 11:42:13 CST)
- error messages "*** glibc detected *** free(): invalid pointer" Yinglong Miao (Mon Feb 16 2009 - 11:23:32 CST)
- Re: error messages "*** glibc detected *** free(): invalid pointer" John Stone (Mon Feb 16 2009 - 11:43:44 CST)
- Re: error messages "*** glibc detected *** free(): invalid pointer" Yinglong Miao (Mon Feb 16 2009 - 11:51:38 CST)
- Re: error messages "*** glibc detected *** free(): invalid pointer" John Stone (Mon Feb 16 2009 - 11:54:45 CST)
- Re: error messages "*** glibc detected *** free(): invalid pointer" Yinglong Miao (Mon Feb 16 2009 - 12:10:11 CST)
- Re: error messages "*** glibc detected *** free(): invalid pointer" John Stone (Mon Feb 16 2009 - 13:14:31 CST)
- Re: error messages "*** glibc detected *** free(): invalid pointer" John Stone (Wed Feb 18 2009 - 09:44:02 CST)
- Re: error messages "*** glibc detected *** free(): invalid pointer" Yinglong Miao (Wed Feb 18 2009 - 17:32:26 CST)
- Re: error messages "*** glibc detected *** free(): invalid pointer" John Stone (Wed Feb 18 2009 - 17:43:14 CST)
- Re: error messages "*** glibc detected *** free(): invalid pointer" Yinglong Miao (Mon Feb 16 2009 - 11:51:38 CST)
- Re: error messages "*** glibc detected *** free(): invalid pointer" Axel Kohlmeyer (Mon Feb 16 2009 - 12:26:19 CST)
- Re: error messages "*** glibc detected *** free(): invalid pointer" John Stone (Mon Feb 16 2009 - 11:43:44 CST)
- Cannot read MSMS facet file BIN ZHANG (Sun Feb 15 2009 - 23:54:52 CST)
- The display windows is out of my screen G.H. Zuo (Sun Feb 15 2009 - 00:21:05 CST)
- about measuring volume of the binding site Falgun Shah (Sat Feb 14 2009 - 15:58:14 CST)
- Membrane Proteins Tutorial Marcos Sotomayor (Fri Feb 13 2009 - 16:25:15 CST)
- Atom distances from trajotory bo baker (Thu Feb 12 2009 - 23:50:21 CST)
- Problem when labeling atoms on machine with intel X4500HD integreted graphic card Shi, Chuanyin (Thu Feb 12 2009 - 15:25:45 CST)
- installation Fernanda S. (Thu Feb 12 2009 - 13:08:19 CST)
- Re: installation John Stone (Thu Feb 12 2009 - 13:40:02 CST)
- Re: installation John Stone (Sat Feb 14 2009 - 14:32:53 CST)
- Re: installation Fernanda S. (Sat Feb 14 2009 - 17:18:57 CST)
- Re: installation John Stone (Sat Feb 14 2009 - 19:34:29 CST)
- Re: installation Fernanda S. (Sun Feb 15 2009 - 08:05:10 CST)
- Re: installation Axel Kohlmeyer (Sun Feb 15 2009 - 12:46:34 CST)
- Re: installation John Stone (Sun Feb 15 2009 - 12:54:29 CST)
- Re: installation Fernanda S. (Sun Feb 15 2009 - 13:32:20 CST)
- Re: installation Ramon Crehuet (Fri Feb 13 2009 - 05:08:51 CST)
- Re: installation John Stone (Thu Feb 12 2009 - 13:40:02 CST)
- Atom distances from trajotory bo baker (Thu Feb 12 2009 - 03:27:20 CST)
- Load multiple files bo baker (Wed Feb 11 2009 - 22:43:35 CST)
- problem Barbault Florent (Wed Feb 11 2009 - 02:41:52 CST)
- Flow Fields Roland Schulz (Tue Feb 10 2009 - 16:04:23 CST)
- How to specify processors for running VMD on a cluster? Yinglong Miao (Tue Feb 10 2009 - 10:45:27 CST)
- Equivalent Mouse Capabilities to Tracker CAVELib Amr Rizq (Mon Feb 09 2009 - 07:06:26 CST)
- multiplot : integration of undrawing command (?) Nadja Lederer (Thu Feb 05 2009 - 05:14:43 CST)
- "Hands-On" Workshop on Computational Biophysics, July 6-10 and August 10-14, 2009 TCBG Workshop (Thu Feb 05 2009 - 15:52:29 CST)
- Take a look at jaxtr! Sudipta Sinha (Sun Feb 08 2009 - 22:20:40 CST)
- concatenate protein and 2 ligand files Thomas Evangelidis (Sat Feb 07 2009 - 11:02:30 CST)
- International opportunity robert (Fri Feb 06 2009 - 11:25:07 CST)
- VMD and IED on Windows XP Roland Schmucki (Thu Feb 05 2009 - 20:57:34 CST)
- Progress Bar for the Elapsed Time: rendering problem Suman Chakrabarty (Thu Feb 05 2009 - 16:42:20 CST)
- Render alpha-carbon trace as cartoon Patrick Buck (Thu Feb 05 2009 - 13:57:54 CST)
- trajectory path script Katherine Parra (Thu Feb 05 2009 - 11:00:12 CST)
- Atomselect in NAMD GUI bo baker (Thu Feb 05 2009 - 05:02:45 CST)
- "Sorry, this version VMD was compiled with Python support disabled" Maxim Paliy (Wed Feb 04 2009 - 09:19:49 CST)
- Apologies Lucas Fernandez Seivane (Tue Feb 03 2009 - 17:34:58 CST)
- problem with "measure fit " Leontyev Igor (Tue Feb 03 2009 - 15:51:02 CST)
- property iterate over a range (representation / draw style) bonicoli_at_loria.fr (Tue Feb 03 2009 - 11:16:12 CST)
- rmsd matrix Andres Morales N (Tue Feb 03 2009 - 10:01:28 CST)
- deleting specific residues or atoms maria goranovic (Tue Feb 03 2009 - 09:57:54 CST)
- add a new representation style to VMD Vlad Cojocaru (Tue Feb 03 2009 - 08:22:24 CST)
- pictures with frame BIN ZHANG (Tue Feb 03 2009 - 01:40:32 CST)
- selecting set of residue Falgun Shah (Mon Feb 02 2009 - 14:44:45 CST)
- Bug in molefacture proline residue of official version (1.8.6 LINUXAMD64) Alexandre Suman de Araujo (Mon Feb 02 2009 - 12:51:46 CST)
- rmsd matrix Andres Morales N (Mon Feb 02 2009 - 10:59:50 CST)
- Link between the electrostatic potential on the surface and the grid.dx generated by APBS Emeline Leproult (Mon Feb 02 2009 - 09:57:02 CST)
- scriptable way to add hydrogens Thomas Evangelidis (Sat Jan 31 2009 - 16:25:16 CST)
- How to install the inorganicbuilder on Windows vista Hideya Nakamura (Thu Jan 29 2009 - 19:41:45 CST)
- Unable to run VMD in graphical mode/ ubuntu 8.10 / Open GL problem Katya Lyakhova (Wed Jan 28 2009 - 09:19:35 CST)
- [patch] potential CUDA acceleration - load-balancing on different CUDA devices Martin Aumüller (Wed Jan 28 2009 - 06:35:19 CST)
- get a PDB file from DCD file Andres Morales N (Tue Jan 27 2009 - 07:58:23 CST)
- Rosetta Academic Training Workshop Nir London (Tue Jan 27 2009 - 07:05:12 CST)
- VMD & NAMD atoms naming convention? Javier Goicochea (Tue Jan 27 2009 - 03:05:09 CST)
- Note to VMD-L about posting attachments etc... John Stone (Mon Jan 26 2009 - 15:58:53 CST)
- Re: (Resend) Re: Breaking Bonds in VMD John Stone (Mon Jan 26 2009 - 15:55:29 CST)
- (no subject) Andres Morales N (Mon Jan 26 2009 - 14:37:40 CST)
- (no subject) gurunath katagi (Mon Jan 26 2009 - 03:19:30 CST)
- how to set color parameters differently for different molecules Thomas Evangelidis (Sun Jan 25 2009 - 12:09:10 CST)
- Re: how to set color parameters differently for different molecules Axel Kohlmeyer (Sun Jan 25 2009 - 13:18:10 CST)
- Re: how to set color parameters differently for different molecules Thomas Evangelidis (Thu Jan 29 2009 - 15:34:31 CST)
- Re: how to set color parameters differently for different molecules John Stone (Thu Jan 29 2009 - 15:41:18 CST)
- Re: how to set color parameters differently for different molecules Thomas Evangelidis (Thu Jan 29 2009 - 19:08:08 CST)
- Re: how to set color parameters differently for different molecules Axel Kohlmeyer (Thu Jan 29 2009 - 20:35:35 CST)
- Re: how to set color parameters differently for different molecules Thomas Evangelidis (Thu Jan 29 2009 - 15:34:31 CST)
- Re: how to set color parameters differently for different molecules MQO. Carlos Javier Núñez Aguero (Thu Jan 29 2009 - 19:03:40 CST)
- Re: how to set color parameters differently for different molecules Axel Kohlmeyer (Sun Jan 25 2009 - 13:18:10 CST)
- VMD not loading in Suse 11.1 Andrew James Bennett (Fri Jan 23 2009 - 05:43:05 CST)
- Tcl script Leonardo Trabuco (Thu Jan 22 2009 - 00:01:39 CST)
- Tcl script varsha gautham (Wed Jan 21 2009 - 22:45:29 CST)
- accessing bonds angles dihedrals etc lists after PSF file is read into VMD Maxim Paliy (Wed Jan 21 2009 - 15:29:54 CST)
- Re: accessing bonds angles dihedrals etc lists after PSF file is read into VMD John Stone (Thu Jan 22 2009 - 11:33:21 CST)
- Re: accessing bonds angles dihedrals etc lists after PSF file is read into VMD Iman Salehinia (Thu Jan 22 2009 - 18:21:59 CST)
- Re: accessing bonds angles dihedrals etc lists after PSF file is read into VMD Peter Freddolino (Thu Jan 22 2009 - 18:38:36 CST)
- Re: accessing bonds angles dihedrals etc lists after PSF file is read into VMD Axel Kohlmeyer (Fri Jan 23 2009 - 16:20:30 CST)
- Re: accessing bonds angles dihedrals etc lists after PSF file is read into VMD John Stone (Mon Jan 26 2009 - 15:42:17 CST)
- Re: accessing bonds angles dihedrals etc lists after PSF file is read into VMD Iman Salehinia (Mon Jan 26 2009 - 16:10:39 CST)
- Re: accessing bonds angles dihedrals etc lists after PSF file is read into VMD Iman Salehinia (Thu Jan 22 2009 - 18:21:59 CST)
- Re: accessing bonds angles dihedrals etc lists after PSF file is read into VMD John Stone (Thu Jan 22 2009 - 11:33:21 CST)
- Breaking Bonds in VMD nicholas lee (Tue Jan 20 2009 - 10:40:46 CST)
- VMD Installation problem on Ubuntu 8.10 maria goranovic (Tue Jan 20 2009 - 08:27:12 CST)
- VMD plugin for Desmond ÖÜÎIJý (Tue Jan 20 2009 - 08:23:13 CST)
- VMD window transparent in Opensuse 11.1 ATI system Ramon Crehuet (Tue Jan 20 2009 - 06:09:27 CST)
- Re: VMD window transparent in Opensuse 11.1 ATI system John Stone (Tue Jan 20 2009 - 08:44:57 CST)
- Re: VMD window transparent in Opensuse 11.1 ATI system John Stone (Tue Jan 20 2009 - 10:36:12 CST)
- Re: VMD window transparent in Opensuse 11.1 ATI system Dan Wright (Tue Jan 20 2009 - 15:13:21 CST)
- Re: VMD window transparent in Opensuse 11.1 ATI system John Stone (Tue Jan 20 2009 - 15:15:14 CST)
- Re: VMD window transparent in Opensuse 11.1 ATI system Ramon Crehuet (Tue Jan 27 2009 - 11:35:15 CST)
- Re: VMD window transparent in Opensuse 11.1 ATI system John Stone (Tue Jan 27 2009 - 11:56:00 CST)
- Re: VMD window transparent in Opensuse 11.1 ATI system John Stone (Tue Jan 20 2009 - 10:36:12 CST)
- Re: VMD window transparent in Opensuse 11.1 ATI system Axel Kohlmeyer (Tue Jan 20 2009 - 08:56:12 CST)
- Re: VMD window transparent in Opensuse 11.1 ATI system John Stone (Tue Jan 20 2009 - 08:44:57 CST)
- Fwd: Tcl script varsha gautham (Tue Jan 20 2009 - 02:11:56 CST)
- Problems with tcl/tk 8.5 Bernd Doser (Tue Jan 20 2009 - 02:08:05 CST)
- Download the newest version of VMD ÖÜÎIJý (Mon Jan 19 2009 - 04:15:52 CST)
- How to get rid of default patch for NTER and CTER Jianping Lin (Sun Jan 18 2009 - 15:45:34 CST)
- Test builds of VMD 1.8.7 using Tcl/Tk 8.5.x... John Stone (Fri Jan 16 2009 - 15:34:21 CST)
- XYZ trajectory with different atom types? AA (Fri Jan 16 2009 - 13:21:15 CST)
- trans routine Edward Lyman (Fri Jan 16 2009 - 12:49:24 CST)
- Problem with Install bo baker (Fri Jan 16 2009 - 05:12:34 CST)
- ANGLES and DIHEDRALS ... location in VMD code? Javier Goicochea (Fri Jan 16 2009 - 02:17:00 CST)
- helicity score? BIN ZHANG (Thu Jan 15 2009 - 23:39:21 CST)
- Understanding topology files? Javier Goicochea (Thu Jan 15 2009 - 08:03:50 CST)
- loosing color when rendering molecular surface in VMD Michael Klein (Wed Jan 14 2009 - 20:17:23 CST)
- Data fields in vmd Cesar Luis Avila (Wed Jan 14 2009 - 15:02:25 CST)
- updating DCD frames in python Michael Kreim (Wed Jan 14 2009 - 09:55:06 CST)
- building loops riya doreen (Tue Jan 13 2009 - 18:53:09 CST)
- Dobule and triple bonds Max (Tue Jan 13 2009 - 04:32:04 CST)
- center of mass Alison Grinthal (Mon Jan 12 2009 - 13:51:43 CST)
- Release of the R.E.D.-III.1 tools FyD (Mon Jan 12 2009 - 05:59:14 CST)
- VMD for Linux bo baker (Mon Jan 12 2009 - 05:14:50 CST)
- : about complexing protein and ligand! Shirin Awasthi (Sun Jan 11 2009 - 22:40:48 CST)
- odd render problems with Vista Irene Newhouse (Sun Jan 11 2009 - 13:26:57 CST)
- Re: odd render problems with Vista Peter Freddolino (Sun Jan 11 2009 - 14:05:18 CST)
- Re: odd render problems with Vista Axel Kohlmeyer (Sun Jan 11 2009 - 14:37:10 CST)
- RE: odd render problems with Vista Irene Newhouse (Sun Jan 11 2009 - 18:21:59 CST)
- Re: odd render problems with Vista Peter Freddolino (Sun Jan 11 2009 - 18:50:51 CST)
- RE: odd render problems with Vista Irene Newhouse (Sun Jan 11 2009 - 19:49:29 CST)
- Re: odd render problems with Vista Eric H. Lee (Sun Jan 11 2009 - 20:53:13 CST)
- 4x4 trafo matrices to get "homo-two-protein-complex" Sebastian Stolzenberg (Sun Jan 11 2009 - 22:58:47 CST)
- Re: 4x4 trafo matrices to get "homo-two-protein-complex" Axel Kohlmeyer (Mon Jan 12 2009 - 09:05:41 CST)
- Re: 4x4 trafo matrices to get "homo-two-protein-complex" Sebastian Stolzenberg (Mon Jan 12 2009 - 12:09:50 CST)
- Re: 4x4 trafo matrices to get "homo-two-protein-complex" Peter Freddolino (Mon Jan 12 2009 - 12:17:53 CST)
- Re: 4x4 trafo matrices to get "homo-two-protein-complex" Sebastian Stolzenberg (Mon Jan 12 2009 - 12:42:00 CST)
- Re: 4x4 trafo matrices to get "homo-two-protein-complex" Peter Freddolino (Mon Jan 12 2009 - 19:30:51 CST)
- Re: 4x4 trafo matrices to get "homo-two-protein-complex" Axel Kohlmeyer (Mon Jan 12 2009 - 14:32:27 CST)
- Re: odd render problems with Vista Axel Kohlmeyer (Sun Jan 11 2009 - 14:27:58 CST)
- Re: odd render problems with Vista Benjamin Bouvier (Sun Jan 11 2009 - 14:20:04 CST)
- Re: odd render problems with Vista Peter Freddolino (Sun Jan 11 2009 - 14:05:18 CST)
- putting a set of selections in a list or an array A D (Sun Jan 11 2009 - 12:14:08 CST)
- cube file question Jun Cheng (Fri Jan 09 2009 - 05:12:20 CST)
- Functional Groups Max (Fri Jan 09 2009 - 04:51:39 CST)
- Calculating acyl chain order parameter profile on phospholipid vesicles Cesar Luis Avila (Thu Jan 08 2009 - 15:43:55 CST)
- which model in pdb vill VMD present? Steven W (Wed Jan 07 2009 - 12:21:59 CST)
- measure rmsf - command (step argument) Nadja Lederer (Wed Jan 07 2009 - 05:20:42 CST)
- Large dcd file jouko_at_berkeley.edu (Tue Jan 06 2009 - 16:31:46 CST)
- Problems with NewCartoon Cartoon Representations haosheng_at_hec.utah.edu (Tue Jan 06 2009 - 15:39:43 CST)
- eliminate atoms from psf and pdb files caterinabernini_at_unisi.it (Tue Jan 06 2009 - 11:40:15 CST)
- changing bond color jfgaff_at_ncsu.edu (Tue Jan 06 2009 - 11:39:20 CST)
- tcl scripts in parallel in VMD? Maxim Paliy (Tue Jan 06 2009 - 08:14:41 CST)
- a problem on Red Hat Enterprise Linux 5 Seungho Choe (Mon Jan 05 2009 - 10:48:32 CST)
- list of all the file type keywords for "mol load"? Maxim Paliy (Mon Jan 05 2009 - 10:00:20 CST)
- Changing the Secondary Structure of a Protein MIke S (Sun Dec 28 2008 - 01:18:23 CST)
- I need a bid trajectory please!!! Thomas Evangelidis (Thu Dec 25 2008 - 16:54:44 CST)
- Space distribution functions aneesh cna (Wed Dec 24 2008 - 23:08:03 CST)
- beta column format in PDB BIN ZHANG (Wed Dec 24 2008 - 13:41:23 CST)
- SBCG membrane Dolan, Michael (NIH/NIAID) [C] (Wed Dec 24 2008 - 11:59:25 CST)
- difficulties referencing a variable within a namespace Thomas Evangelidis (Sun Dec 21 2008 - 21:00:38 CST)
- Remove PBC Alessandro.Maiorana_at_roma2.infn.it (Sun Dec 21 2008 - 04:09:38 CST)
- VMD Animation example doesn't work... Alberto Sergio Garay (Fri Dec 19 2008 - 06:52:05 CST)
- CHARMM to AMBER trajectory conversion Peter Jones (Thu Dec 18 2008 - 22:40:53 CST)
- known issues with measure hbonds Harindar Keer (Thu Dec 18 2008 - 17:59:34 CST)
- How to get all the angle combinations? BIN ZHANG (Wed Dec 17 2008 - 23:07:16 CST)
- QM Geometry optimization bo baker (Tue Dec 16 2008 - 23:59:49 CST)
- VMD Animation example doesn't work... Alberto Sergio Garay (Tue Dec 16 2008 - 04:43:23 CST)
- defintion of alpha helix in vmd? Bernhard Knapp (Tue Dec 16 2008 - 03:30:03 CST)
- haptics device "novint falcon" angel_at_cbuc.cl (Mon Dec 15 2008 - 09:13:31 CST)
- the exact definition of the keyword "radius" of the atom selection Lan Hua (Sat Dec 13 2008 - 14:10:40 CST)
- paratool dont recognize gaussian output angel_at_cbuc.cl (Fri Dec 12 2008 - 10:10:13 CST)
- VMD, VRPN, Phantom Desktop Nicholas Labello (Fri Dec 12 2008 - 09:43:19 CST)
- coloring of an item created by canvas Nadja Lederer (Wed Dec 10 2008 - 04:07:51 CST)
- Problem finding center of mass for all the frames ramya narasimhan (Wed Dec 10 2008 - 01:31:38 CST)
- How to get number of electrons of an atom in VMD? BIN ZHANG (Mon Dec 08 2008 - 15:31:42 CST)
- equilibrating a membrane patch Edward Lyman (Mon Dec 08 2008 - 13:25:30 CST)
- regarding writemol2 jani sahil (Sat Dec 06 2008 - 00:34:19 CST)
- reagsrding writemol2 jani sahil (Fri Dec 05 2008 - 00:11:42 CST)
- How to generate an index (.ind) file? Anirban Ghosh (Fri Dec 05 2008 - 00:07:49 CST)
- atom selection aneesh cna (Wed Dec 03 2008 - 05:32:57 CST)
- To find the residues on each side of the protein ramya narasimhan (Wed Dec 03 2008 - 02:42:33 CST)
- undrawing lines in multiplot? Nadja Lederer (Wed Dec 03 2008 - 02:29:57 CST)
- memory leak found Ondrej Marsalek (Tue Dec 02 2008 - 09:08:09 CST)
- Rotation of molecules Björn Windshügel (Tue Dec 02 2008 - 08:20:30 CST)
- Getting data as vector or matrix Iman Salehinia (Tue Dec 02 2008 - 00:48:29 CST)
- Running VMD on Mac OS X Christopher Share (Mon Dec 01 2008 - 23:23:08 CST)
- prepare initial structure oguz gurbulak (Mon Dec 01 2008 - 13:52:31 CST)
- script that reacts on movement of frameslider in vmd main Nadja Lederer (Mon Dec 01 2008 - 07:41:36 CST)
- how to prevent view reset on data load Ondrej Marsalek (Sat Nov 29 2008 - 10:52:45 CST)
- transparent or translucent backgrond for images Neelanjana Sengupta (Sat Nov 29 2008 - 06:18:46 CST)
- total number of donors and acceptors Roman Petrenko (Wed Nov 26 2008 - 18:27:16 CST)
- Desmond trajectory conversion to dcd format Dong Xu (Wed Nov 26 2008 - 16:24:57 CST)
- Other color scales than the predefined ones? Berit Hinnemann (Wed Nov 26 2008 - 07:00:17 CST)
- Re: bug in comments interpretation of vmd John Stone (Wed Nov 26 2008 - 11:13:49 CST)
- Re: multiplot: control reaction for click on datapoints? Nadja Lederer (Wed Nov 26 2008 - 11:12:20 CST)
- Other color scales than the predefined ones Berit Hinnemann (Wed Nov 26 2008 - 09:52:23 CST)
- tcl fscript or Removeing protein flucutation karthigeyan karthigeyantp (Wed Nov 26 2008 - 05:45:33 CST)
- Movie of a xyz trajectory Roberto Gaspari (Wed Nov 26 2008 - 03:09:43 CST)
- multiplot: control reaction for click on datapoints? Nadja Lederer (Wed Nov 26 2008 - 02:34:31 CST)
- drawing lines Ryan Pavlovicz (Tue Nov 25 2008 - 12:38:31 CST)
- unloading volumetric data Ondrej Marsalek (Mon Nov 24 2008 - 10:18:39 CST)
- CG bead definition BIN ZHANG (Sun Nov 23 2008 - 23:56:12 CST)
- entropy calculations Roman Petrenko (Fri Nov 21 2008 - 15:23:07 CST)
- entropy calculations Roman Petrenko (Fri Nov 21 2008 - 15:16:40 CST)
- Calculating volumes enclosed by SAS Ghaleb El Masri (Fri Nov 21 2008 - 14:44:39 CST)
- need tcl help, please Irene Newhouse (Fri Nov 21 2008 - 12:57:03 CST)
- view only parts of the loaded volumetric data Vlad Cojocaru (Fri Nov 21 2008 - 04:18:11 CST)
- Loading .vel file in VMD dipti lele (Thu Nov 20 2008 - 23:03:42 CST)
- question Wojciech Rajchel (Thu Nov 20 2008 - 11:08:31 CST)
- running a script Mark M Huntress (Thu Nov 20 2008 - 10:03:10 CST)
- how to get temperature fluctuations maria goranovic (Thu Nov 20 2008 - 08:36:06 CST)
- 3D Graphics Jesper Soerensen (Thu Nov 20 2008 - 05:50:51 CST)
- [patch] Autodetection of formats supported by openbabel FX (Thu Nov 20 2008 - 05:07:17 CST)
- H-bond occupancy Irene Newhouse (Wed Nov 19 2008 - 12:23:58 CST)
- representation ColorID in Tcl David Tanner (Wed Nov 19 2008 - 11:25:42 CST)
- IED analysis ÖÜÎIJý (Wed Nov 19 2008 - 02:19:19 CST)
- Autoionize plugin Rabab Toubar (Tue Nov 18 2008 - 19:40:24 CST)
- use configure.options Chen Chen (Mon Nov 17 2008 - 19:34:24 CST)
- General question about the memory usage of VMD tinifcarter_at_gmail.com (Mon Nov 17 2008 - 11:48:00 CST)
- how to run catdcd from within a proc Thomas Evangelidis (Mon Nov 17 2008 - 10:42:44 CST)
- Installation problems on openSUSE 10.3 Lawrence Wickert (Sat Nov 15 2008 - 20:22:44 CST)
- (no subject) Lawrence Wickert (Sat Nov 15 2008 - 20:19:35 CST)
- How to set the default properties of drawing methods? Heikki Kasnanen (Thu Nov 13 2008 - 08:39:43 CST)
- combine.tcl error Jennifer Brookes (Thu Nov 13 2008 - 04:23:03 CST)
- About Hydrogen bond calculation ÖÜÎIJý (Thu Nov 13 2008 - 03:20:03 CST)
- wavefront and VMD Sandro Canavezzi de Abreu (Wed Nov 12 2008 - 14:07:36 CST)
- (no subject) Anirban Ghosh (Tue Nov 11 2008 - 07:17:04 CST)
- OpenGL Display max_at_liaad.up.pt (Tue Nov 11 2008 - 04:03:12 CST)
- doubling a membrane Edward Lyman (Mon Nov 10 2008 - 16:42:13 CST)
- fasta2pdb Roman Petrenko (Mon Nov 10 2008 - 14:33:24 CST)
- movie Abu Naser (Sun Nov 09 2008 - 11:06:20 CST)
- usage for the patch 5DP (there is no information in the tutorial) OZGE ENGIN (Sat Nov 08 2008 - 03:17:41 CST)
- usage for the pacth 5DP (there is no information in the tutorial) OZGE ENGIN (Sat Nov 08 2008 - 03:10:17 CST)
- usage for the patch 5DP (there is no information in the tutorial) OZGE ENGIN (Fri Nov 07 2008 - 19:04:35 CST)
- load MSMS files into vmd Prevost Martine (Fri Nov 07 2008 - 09:29:34 CST)
- Multiple incompatible definitions warning Subramanian Vaitheeswaran (Thu Nov 06 2008 - 11:25:01 CST)
- RMSD error "Matrix: Warning: no convergence" Maria Sanchez (Thu Nov 06 2008 - 09:16:20 CST)
- Sequentially numbering atom names in pdb file Subramanian Vaitheeswaran (Wed Nov 05 2008 - 14:29:24 CST)
- CG Map Tool Syntax Error Anirban Ghosh (Wed Nov 05 2008 - 04:48:32 CST)
- B factor calculation AyĹźe Ă–zlem Aykut (Tue Nov 04 2008 - 10:51:24 CST)
- Average position of atom set Christopher Hartshorn (Tue Nov 04 2008 - 09:59:56 CST)
- Psfgen : apply patches Nicolas Floquet (Tue Nov 04 2008 - 06:51:57 CST)
- conformations of a linker Edward Lyman (Fri Oct 31 2008 - 14:07:08 CDT)
- [Fwd: problems with manipulating control switches on VMS main menu] Piotr Cieplak (Fri Oct 31 2008 - 12:57:15 CDT)
- Per-frame 'graphics'? Benjamin Bouvier (Fri Oct 31 2008 - 10:46:03 CDT)
- VMD crashes on displaying NewRibbons or New Cartoon Jufang Shan (Fri Oct 31 2008 - 10:13:32 CDT)
- Visualizing multiple molecules max_at_liaad.up.pt (Fri Oct 31 2008 - 07:26:00 CDT)
- PMEpot units jirasak wong-ekkabut (Thu Oct 30 2008 - 15:10:05 CDT)
- problems with manipulating control switches on VMS main menu Piotr Cieplak (Wed Oct 29 2008 - 19:52:24 CDT)
- Render surface colored by electrostatic potential Adam Kraut (Tue Oct 28 2008 - 13:27:52 CDT)
- isosurface question Raluca Mihaela ANDREI (Tue Oct 28 2008 - 12:48:14 CDT)
- move matrix definition Edward Lyman (Tue Oct 28 2008 - 11:39:42 CDT)
- Free Trial of New Toxicity Prediction Software (LD50, MRDD, side effects) is now available Maxim Kholin (Tue Oct 28 2008 - 09:00:25 CDT)
- reading multiples molecules. no tengo nombre (Tue Oct 28 2008 - 05:05:19 CDT)
- A question about the namd energy plugin of VMD wayj86 wayj86 (Sun Oct 26 2008 - 08:58:21 CDT)
- Camera in VMD!!! Iman Salehinia (Fri Oct 24 2008 - 23:10:35 CDT)
- Warning: no convergence in alignment Jianhui Tian (Fri Oct 24 2008 - 17:02:08 CDT)
- PBCtools verison 2.3: how to obtain it? mon_sharma_at_research.iiit.ac.in (Fri Oct 24 2008 - 09:19:37 CDT)
- advanced selections (or explicit pair list) for measure gofr ? Maxim Paliy (Fri Oct 24 2008 - 07:48:40 CDT)
- independent stereo display Petrica GASCA (Thu Oct 23 2008 - 11:39:07 CDT)
- create movie from multiple frames Petrica GASCA (Thu Oct 23 2008 - 08:25:17 CDT)
- extraction of bound water molecules in a trajectory mon_sharma_at_research.iiit.ac.in (Thu Oct 23 2008 - 04:39:07 CDT)
- change the radius of atoms Iman Salehinia (Wed Oct 22 2008 - 21:35:36 CDT)
- Multiseq error: 'can't read 'SequenceIDtoMolID(122)': no such element in array' Perreault, Roger Edward (Wed Oct 22 2008 - 20:34:57 CDT)
- Re: A question about the plugin of salt bridge plugin Leonardo Trabuco (Wed Oct 22 2008 - 11:24:09 CDT)
- dcd format JONATHAN BLACK (Wed Oct 22 2008 - 04:30:19 CDT)
- Extract parameters of Shape-based Coarse Graining model from AA simulation dongsheng lei (Wed Oct 22 2008 - 01:54:54 CDT)
- convert THR and SER to the phosphorylated forms bo baker (Tue Oct 21 2008 - 19:06:11 CDT)
- Querry dipti lele (Tue Oct 21 2008 - 08:42:18 CDT)
- fitting structure to map generated by Volmap Tomek Wlodarski (Tue Oct 21 2008 - 07:55:09 CDT)
- Re: fitting structure to map generated by Volmap Axel Kohlmeyer (Tue Oct 21 2008 - 09:01:22 CDT)
- Re: fitting structure to map generated by Volmap Tomek Wlodarski (Tue Oct 21 2008 - 14:46:15 CDT)
- Re: fitting structure to map generated by Volmap Axel Kohlmeyer (Tue Oct 21 2008 - 14:53:57 CDT)
- Re: fitting structure to map generated by Volmap Tomek Wlodarski (Tue Oct 21 2008 - 15:30:46 CDT)
- Re: fitting structure to map generated by Volmap Axel Kohlmeyer (Tue Oct 21 2008 - 15:53:07 CDT)
- Re: fitting structure to map generated by Volmap Tomek Wlodarski (Wed Oct 22 2008 - 04:56:03 CDT)
- Re: fitting structure to map generated by Volmap Axel Kohlmeyer (Wed Oct 22 2008 - 10:38:15 CDT)
- Re: fitting structure to map generated by Volmap Tomek Wlodarski (Tue Oct 21 2008 - 14:46:15 CDT)
- Re: fitting structure to map generated by Volmap Axel Kohlmeyer (Tue Oct 21 2008 - 09:01:22 CDT)
- volmap Panagiota Georgoulia (Tue Oct 21 2008 - 06:17:51 CDT)
- (no subject) JONATHAN BLACK (Tue Oct 21 2008 - 04:16:29 CDT)
- Selecting some atoms and changing the color of them Iman Salehinia (Tue Oct 21 2008 - 01:55:03 CDT)
- animated gif Panagiota Georgoulia (Mon Oct 20 2008 - 06:37:32 CDT)
- PSFGEN problem with URA residues Anirban Ghosh (Mon Oct 20 2008 - 06:27:06 CDT)
- feature request Tamara Rogers (Sun Oct 19 2008 - 12:38:18 CDT)
- Improving VMD performance on Linux? nbabcock_at_qis.ucalgary.ca (Sat Oct 18 2008 - 14:06:35 CDT)
- Out of town until November 1 John Stone (Thu Oct 16 2008 - 15:53:42 CDT)
- Catdcd? Christopher Hartshorn (Thu Oct 16 2008 - 11:37:15 CDT)
- saving trajectories from the command line Jim Pfaendtner (Thu Oct 16 2008 - 07:28:00 CDT)
- Problem in text mode Wei Huang (Thu Oct 16 2008 - 00:25:07 CDT)
- velocity calculations Ryan Pavlovicz (Wed Oct 15 2008 - 10:18:50 CDT)
- Deleting frames / molecules does not free up memory! Benjamin Bouvier (Tue Oct 14 2008 - 10:26:55 CDT)
- why atomselection "protein" can not choose all the protein atoms with different alternate locations? Lan Hua (Mon Oct 13 2008 - 16:49:07 CDT)
- Re: why atomselection "protein" can not choose all the protein atoms with different alternate locations? Axel Kohlmeyer (Mon Oct 13 2008 - 18:23:35 CDT)
- Re: why atomselection "protein" can not choose all the protein atoms with different alternate locations? John Stone (Tue Oct 14 2008 - 11:43:43 CDT)
- How to specify color based on dihedral angle? Suman Chakrabarty (Mon Oct 13 2008 - 13:09:53 CDT)
- Windows version: Loading/writing files Neelanjana Sengupta (Mon Oct 13 2008 - 07:53:41 CDT)
- CHARMM TO AMBER FORMAT CONVERT Semorale (Sun Oct 12 2008 - 18:20:28 CDT)
- Error in "measure fit" Stephen Hicks (Sat Oct 11 2008 - 15:05:45 CDT)
- Density distribution plots mahesh naalla (Fri Oct 10 2008 - 15:39:30 CDT)
- STRIDE analysis of beta-sheets in VMD Tristan Bereau (Fri Oct 10 2008 - 15:28:33 CDT)
- Question about the Main Menu window display Alfredo Quevedo (Fri Oct 10 2008 - 14:15:47 CDT)
- loading python Ryan Pavlovicz (Thu Oct 09 2008 - 15:21:15 CDT)
- Density distribution plots mahesh naalla (Thu Oct 09 2008 - 13:28:31 CDT)
- Povray render cuts litorice,bond,cpk representations schwarz_at_titus.u-strasbg.fr (Thu Oct 09 2008 - 05:14:20 CDT)
- Fw: VMD 1.8.6 for UBUNTU 8.04LTS Mamta Mohan (Wed Oct 08 2008 - 20:21:11 CDT)
- pbctools usage Subramanian Vaitheeswaran (Wed Oct 08 2008 - 08:21:10 CDT)
- How to visualize only parts of a molecular surface schwarz (Wed Oct 08 2008 - 08:11:47 CDT)
- Fullscreen mode in VMD Alexandr Bezginov (Tue Oct 07 2008 - 12:34:59 CDT)
- Vmd on MACOSX awkward msg at startup and error when running Ubq simulation Montoya, Jesus Gerardo Galaz (Mon Oct 06 2008 - 14:58:39 CDT)
- lipid tail selection BIN ZHANG (Sun Oct 05 2008 - 01:16:45 CDT)
- VMD 1.8.6 for UBUNTU 8.04LTS Mamta Mohan (Fri Oct 03 2008 - 14:03:28 CDT)
- Pairwise RMSD Dong Xu (Fri Oct 03 2008 - 10:10:16 CDT)
- Re: Problems after installation (ubuntu 8.04) Alexander A. Vakhrushev (Fri Oct 03 2008 - 08:43:39 CDT)
- Re: Problems after installation (ubuntu 8.04) John Stone (Fri Oct 03 2008 - 09:49:22 CDT)
- Re: Problems after installation (ubuntu 8.04) Tomek Wlodarski (Fri Oct 03 2008 - 16:23:41 CDT)
- Re: Problems after installation (ubuntu 8.04) Alexander A. Vakhrushev (Fri Oct 03 2008 - 22:55:52 CDT)
- Re: Problems after installation (ubuntu 8.04) John Stone (Tue Oct 07 2008 - 11:46:41 CDT)
- Re: Problems after installation (ubuntu 8.04) Alexander A. Vakhrushev (Tue Oct 07 2008 - 12:03:16 CDT)
- Re: Problems after installation (ubuntu 8.04) John Stone (Tue Oct 07 2008 - 12:05:17 CDT)
- Re: Problems after installation (ubuntu 8.04) Alexander A. Vakhrushev (Tue Oct 07 2008 - 12:08:35 CDT)
- Re: Problems after installation (ubuntu 8.04) Tomek Wlodarski (Fri Oct 03 2008 - 16:23:41 CDT)
- Re: Problems after installation (ubuntu 8.04) Anirban Ghosh (Sat Oct 04 2008 - 13:04:09 CDT)
- Re: Problems after installation (ubuntu 8.04) John Stone (Fri Oct 03 2008 - 09:49:22 CDT)
- Problems after installation (ubuntu 8.04) Tomek Wlodarski (Fri Oct 03 2008 - 07:23:25 CDT)
- Problem with creating psf file from structure made by inorganic builder Anneta Tzampazi (Fri Oct 03 2008 - 04:43:19 CDT)
- TAB key in vmd terminal BIN ZHANG (Thu Oct 02 2008 - 23:32:00 CDT)
- suggested graphic card for Mac Pro Joaquim Rui Rodrigues (Thu Oct 02 2008 - 12:09:32 CDT)
- volumetric maps markus.mooslechner_at_chello.at (Thu Oct 02 2008 - 07:18:38 CDT)
- volumetric maps markus.mooslechner_at_chello.at (Thu Oct 02 2008 - 07:08:11 CDT)
- Does VMD support cfg file format? zhjjvmd (Wed Oct 01 2008 - 03:52:32 CDT)
- atom type Rudra Banerjee (Tue Sep 30 2008 - 23:28:58 CDT)
- water box Rudra Banerjee (Tue Sep 30 2008 - 03:48:37 CDT)
- periodic box image in tcl script Brian Kidd (Mon Sep 29 2008 - 11:27:39 CDT)
- question about sscache qwang_at_mail.uh.edu (Sun Sep 28 2008 - 19:33:02 CDT)
- (no subject) studier_at_life.illinois.edu (Sat Sep 27 2008 - 16:22:10 CDT)
- question about sscache qwang_at_mail.uh.edu (Fri Sep 26 2008 - 14:00:07 CDT)
- visualisation problem with bonds and PBC Jennifer Williams (Fri Sep 26 2008 - 09:32:42 CDT)
- Atoms numbers in VMD Nd S (Thu Sep 25 2008 - 14:07:30 CDT)
- Creating a cuboid box to fit in atoms Ananyo Bandyopadhyay (Thu Sep 25 2008 - 13:29:15 CDT)
- Re: psf file generation: once again Rudra Banerjee (Wed Sep 24 2008 - 23:11:04 CDT)
- psf file generation: once again Rudra Banerjee (Wed Sep 24 2008 - 22:45:49 CDT)
- How to render an image like this one with VMD? Dong Xu (Wed Sep 24 2008 - 20:58:12 CDT)
- water residence time L. Michel Espinoza-Fonseca (Wed Sep 24 2008 - 15:56:53 CDT)
- Re: Help, my molecule is being destroyed John Stone (Wed Sep 24 2008 - 15:46:14 CDT)
- Movie maker problem in VMD Ananyo Bandyopadhyay (Wed Sep 24 2008 - 11:11:14 CDT)
- weird behavior with RMSD Irene Newhouse (Tue Sep 23 2008 - 16:21:02 CDT)
- viewing an embryo markt_at_mskcc.org (Tue Sep 23 2008 - 14:04:41 CDT)
- Re: namd-l: solvate a molecule Chang, Christopher (Tue Sep 23 2008 - 11:57:58 CDT)
- Periodic BC Nd S (Mon Sep 22 2008 - 15:26:20 CDT)
- solvate a molecule Rudra Banerjee (Sat Sep 20 2008 - 01:08:03 CDT)
- rotation around phi/psi Roman Petrenko (Fri Sep 19 2008 - 21:05:24 CDT)
- Solvation Box Navdeep (Fri Sep 19 2008 - 16:43:25 CDT)
- Projection of a vector on to another. Katherine Parra (Fri Sep 19 2008 - 13:56:01 CDT)
- running simulation on dual core processor Mamta Mohan (Fri Sep 19 2008 - 10:44:27 CDT)
- Restarting a simulation $ Langevin Anirban Ghosh (Fri Sep 19 2008 - 07:17:12 CDT)
- difficulty in installing VMD on linux. Deepti Mishra (Fri Sep 19 2008 - 05:47:18 CDT)
- trouble with running vmd after installation , machine gets hung shiladitya_at_jncasr.ac.in (Fri Sep 19 2008 - 04:30:01 CDT)
- Re: trouble with running vmd after installation , machine gets hung Axel Kohlmeyer (Fri Sep 19 2008 - 06:05:42 CDT)
- Re: trouble with running vmd after installation , machine gets hung shiladitya_at_jncasr.ac.in (Sat Sep 20 2008 - 23:14:50 CDT)
- Re: trouble with running vmd after installation , machine gets hung John Stone (Sun Sep 21 2008 - 02:36:43 CDT)
- Re: trouble with running vmd after installation , machine gets hung Axel Kohlmeyer (Sun Sep 21 2008 - 03:13:41 CDT)
- Re: trouble with running vmd after installation , machine gets hung shiladitya_at_jncasr.ac.in (Mon Sep 22 2008 - 18:45:30 CDT)
- Re: trouble with running vmd after installation , machine gets hung shiladitya_at_jncasr.ac.in (Sat Sep 20 2008 - 23:14:50 CDT)
- Re: trouble with running vmd after installation , machine gets hung Axel Kohlmeyer (Fri Sep 19 2008 - 06:05:42 CDT)
- Error generating psf files Nd S (Thu Sep 18 2008 - 18:55:28 CDT)
- Solid Support Problem Christopher Hartshorn (Thu Sep 18 2008 - 13:33:07 CDT)
- Fw: warning during psfgen file Mamta Mohan (Thu Sep 18 2008 - 13:08:29 CDT)
- warning during psfgen file Mamta Mohan (Thu Sep 18 2008 - 10:11:33 CDT)
- counting gas molecules inside the nanotube mishacat_at_udm.ru (Thu Sep 18 2008 - 06:52:51 CDT)
- Trouble installing VMD on LINUX machine Gregor Kladnik (Thu Sep 18 2008 - 06:43:14 CDT)
- Re: problem with psf file generation Rudra Banerjee (Thu Sep 18 2008 - 03:29:07 CDT)
- psfgen problem Rudra Banerjee (Thu Sep 18 2008 - 01:45:55 CDT)
- problem with psf file generation Rudra Banerjee (Thu Sep 18 2008 - 01:12:44 CDT)
- apbs electrostatics James Haven (Wed Sep 17 2008 - 15:15:08 CDT)
- solvation Mamta Mohan (Wed Sep 17 2008 - 13:28:55 CDT)
- simulation image question Mamta Mohan (Wed Sep 17 2008 - 12:42:34 CDT)
- problem downloading VMD 1.8.6 source code Lai, Massimo (Wed Sep 17 2008 - 09:59:40 CDT)
- Interface Propensity bo baker (Wed Sep 17 2008 - 05:56:20 CDT)
- regarding rotating dihedral jani sahil (Tue Sep 16 2008 - 22:26:17 CDT)
- Installing VMD on Fedora Neelanjana Sengupta (Tue Sep 16 2008 - 08:25:54 CDT)
- parallel VMD Benjamin Stauch (Tue Sep 16 2008 - 07:47:16 CDT)
- electrostatic potential Raluca Mihaela ANDREI (Tue Sep 16 2008 - 03:28:02 CDT)
- Re: electrostatic potential John Stone (Tue Sep 16 2008 - 11:01:18 CDT)
- Re: electrostatic potential Raluca Mihaela ANDREI (Thu Sep 18 2008 - 07:33:00 CDT)
- Re: electrostatic potential John Stone (Sat Sep 20 2008 - 02:19:15 CDT)
- Re: electrostatic potential Raluca Mihaela ANDREI (Wed Sep 24 2008 - 10:46:54 CDT)
- Re: electrostatic potential John Stone (Wed Sep 24 2008 - 10:50:29 CDT)
- Re: electrostatic potential Raluca Mihaela ANDREI (Fri Sep 26 2008 - 09:38:52 CDT)
- Re: electrostatic potential John Stone (Mon Sep 29 2008 - 16:57:39 CDT)
- Re: electrostatic potential Raluca Mihaela ANDREI (Thu Sep 18 2008 - 07:33:00 CDT)
- Re: electrostatic potential John Stone (Tue Sep 16 2008 - 11:01:18 CDT)
- extract centers et radii of beads model Matthieu Chavent (Mon Sep 15 2008 - 13:25:13 CDT)
- Fwd: ACS awards John Stone (Mon Sep 15 2008 - 12:53:34 CDT)
- Tachyon render and Tcl scripting Shay Amram (Mon Sep 15 2008 - 11:42:00 CDT)
- How to ionize a Shape Based CG Model? Anirban Ghosh (Mon Sep 15 2008 - 08:09:07 CDT)
- Alias histidine residue Rabab Toubar (Fri Sep 12 2008 - 23:31:47 CDT)
- a VMD script similar to "Rahmachandran plot' applicable to nucleic acids ? Maxim Paliy (Fri Sep 12 2008 - 19:14:04 CDT)
- problems with VMD under linux/64-bit machine Irene Newhouse (Fri Sep 12 2008 - 15:17:56 CDT)
- How to use Inorganic Builder Nd S (Fri Sep 12 2008 - 03:19:12 CDT)
- Rendering problem lillestolen (Thu Sep 11 2008 - 14:16:29 CDT)
- Calculating the torsion angles in nucleic acids mon_sharma_at_research.iiit.ac.in (Thu Sep 11 2008 - 06:40:54 CDT)
- Measure hbonds equivalent in Python interface? Chang, Christopher (Wed Sep 10 2008 - 18:52:43 CDT)
- Volume slice: slice color pontes_at_if.usp.br (Wed Sep 10 2008 - 10:31:55 CDT)
- long bonds Marcelo Carignano (Wed Sep 10 2008 - 07:35:36 CDT)
- problems with autopsf & psfgen Irene Newhouse (Tue Sep 09 2008 - 13:50:10 CDT)
- How to generate more segments? mishacat_at_udm.ru (Tue Sep 09 2008 - 01:30:05 CDT)
- Extensions menu is blank Janet Jacobsen (Mon Sep 08 2008 - 18:46:07 CDT)
- saving charges snoze pa (Mon Sep 08 2008 - 12:14:15 CDT)
- feedback on pc-over-ip technology? Tru Huynh (Mon Sep 08 2008 - 10:40:24 CDT)
- Concerning protein rotation Anneta Tzampazi (Mon Sep 08 2008 - 05:22:40 CDT)
- Superimposition: atomselect for reverse topology guillaume.santini_at_free.fr (Sat Sep 06 2008 - 09:34:52 CDT)
- generate psf structure Rudra Banerjee (Sat Sep 06 2008 - 04:15:25 CDT)
- how to draw the bonds in VMD? Alfred Shaohui Zheng (Sat Sep 06 2008 - 03:07:16 CDT)
- Protein coordinate rotation ianboru_at_email.arizona.edu (Fri Sep 05 2008 - 12:40:48 CDT)
- Running without interface Emily Moore (Thu Sep 04 2008 - 11:29:02 CDT)
- DIHE in topology file politr_at_huji.ac.il (Thu Sep 04 2008 - 02:31:52 CDT)
- CONECT Records in .pdb file - bonds not getting plotted Paul T. Bauman (Wed Sep 03 2008 - 10:42:10 CDT)
- newbie issues markus mooslechner (Tue Sep 02 2008 - 13:39:19 CDT)
- pbc join Edward Lyman (Tue Sep 02 2008 - 13:34:46 CDT)
- Is position dependent color possible? Suman Chakrabarty (Tue Sep 02 2008 - 12:17:59 CDT)
- Merge psf and pdb max_at_liaad.up.pt (Tue Sep 02 2008 - 04:28:53 CDT)
- Re: Merge psf and pdb Axel Kohlmeyer (Tue Sep 02 2008 - 08:15:39 CDT)
- Re: Merge psf and pdb bo liu (Tue Sep 02 2008 - 10:02:26 CDT)
- Re: Merge psf and pdb Axel Kohlmeyer (Tue Sep 02 2008 - 10:46:07 CDT)
- solvating a water molecule Rabab Toubar (Tue Sep 02 2008 - 13:54:47 CDT)
- Re: solvating a water molecule John Stone (Tue Sep 02 2008 - 16:16:49 CDT)
- Re: solvating a water molecule Rabab Toubar (Tue Sep 02 2008 - 22:35:50 CDT)
- Re: solvating a water molecule John Stone (Mon Sep 08 2008 - 11:41:45 CDT)
- Re: solvating a water molecule gaurav nandrajog (Tue Sep 09 2008 - 01:01:33 CDT)
- Re: solvating a water molecule John Stone (Tue Sep 09 2008 - 01:48:46 CDT)
- Re: Merge psf and pdb bo liu (Wed Sep 03 2008 - 00:17:13 CDT)
- Re: Merge psf and pdb bo liu (Tue Sep 02 2008 - 10:02:26 CDT)
- Re: Merge psf and pdb Axel Kohlmeyer (Tue Sep 02 2008 - 08:15:39 CDT)
- Py_atomsel.C: invalid conversion Chang, Christopher (Fri Aug 29 2008 - 13:01:04 CDT)
- algorithm for finding center of mass of the side chains in the protein aneesh cna (Fri Aug 29 2008 - 07:26:26 CDT)
- Calculating pocket volume ben rodriguez (Thu Aug 28 2008 - 16:37:55 CDT)
- TXT program editor Alejandro Ortega (Thu Aug 28 2008 - 14:43:14 CDT)
- Re: TXT program editor Peter Freddolino (Thu Aug 28 2008 - 15:06:53 CDT)
- Re: TXT program editor Emily Moore (Thu Aug 28 2008 - 17:09:42 CDT)
- Re: TXT program editor Axel Kohlmeyer (Thu Aug 28 2008 - 17:51:39 CDT)
- Re: TXT program editor Emily Moore (Thu Aug 28 2008 - 18:13:01 CDT)
- Re: TXT program editor bo liu (Fri Aug 29 2008 - 03:17:57 CDT)
- Re: TXT program editor Suman Chakrabarty (Fri Aug 29 2008 - 08:38:29 CDT)
- Re: TXT program editor Peter Freddolino (Fri Aug 29 2008 - 09:34:29 CDT)
- Re: TXT program editor L. Michel Espinoza-Fonseca (Fri Aug 29 2008 - 10:58:59 CDT)
- Re: TXT program editor Alejandro Ortega (Fri Aug 29 2008 - 13:11:13 CDT)
- Re: TXT program editor Emily Moore (Thu Aug 28 2008 - 17:09:42 CDT)
- Re: TXT program editor Axel Kohlmeyer (Thu Aug 28 2008 - 15:50:21 CDT)
- Re: TXT program editor Sabuj Pattanayek (Thu Aug 28 2008 - 17:03:11 CDT)
- Re: namd-l: TXT program editor Giovanni Bellesia (Thu Aug 28 2008 - 16:21:03 CDT)
- Re: TXT program editor Peter Freddolino (Thu Aug 28 2008 - 15:06:53 CDT)
- diffusion coefficient from rmsd Rudra Banerjee (Wed Aug 27 2008 - 21:55:28 CDT)
- HOLE PROGRAM Semorale (Wed Aug 27 2008 - 18:23:10 CDT)
- catDCD Robert Fenwick (Wed Aug 27 2008 - 08:01:38 CDT)
- segfault using VMD 1.8.6 32-bit Linux and chromium 1.9 Chris Berthiaume (Mon Aug 25 2008 - 20:50:12 CDT)
- Failure to open PDB files hzf101_at_psu.edu (Mon Aug 25 2008 - 13:12:52 CDT)
- resid of water that is hydrogen bonded nahren manuel (Mon Aug 25 2008 - 07:35:22 CDT)
- measure gofr - how is g(r) normalised? Maxim Paliy (Mon Aug 25 2008 - 05:07:37 CDT)
- Python callbacks in VMD James E. Magee (Wed Aug 20 2008 - 06:41:52 CDT)
- Inorganic Builder Plugin max_at_liaad.up.pt (Wed Aug 20 2008 - 04:57:09 CDT)
- Trouble updating frames in script Emily Moore (Tue Aug 19 2008 - 12:21:11 CDT)
- how to call dssp in a script Yuan Feng (Sun Aug 17 2008 - 18:51:56 CDT)
- Question about trace vmd_frame(molid) Oren Elrad (Fri Aug 15 2008 - 11:33:02 CDT)
- RMSD SCRIPT Semorale (Fri Aug 15 2008 - 05:12:11 CDT)
- LAMMPS Trajectory Bond Specification nicholas lee (Thu Aug 14 2008 - 14:25:07 CDT)
- axes Nazanin Samadi (Wed Aug 13 2008 - 14:21:06 CDT)
- renumbering residues Roman Petrenko (Wed Aug 13 2008 - 13:50:44 CDT)
- label all residues Roman Petrenko (Wed Aug 13 2008 - 10:09:17 CDT)
- catDCD- convert DCD format Semorale (Tue Aug 12 2008 - 16:10:27 CDT)
- protein-water hydrogen bonds Roman Petrenko (Tue Aug 12 2008 - 10:05:46 CDT)
- rmsd Shadi Mirzae (Mon Aug 11 2008 - 13:52:14 CDT)
- problem controlling orientation of the simulation box drawn by pbctools shiladitya_at_jncasr.ac.in (Sun Aug 10 2008 - 10:52:54 CDT)
- save selected residues bo baker (Sun Aug 10 2008 - 06:04:37 CDT)
- backbone dihedral angles over trajectory Roman Petrenko (Fri Aug 08 2008 - 17:05:59 CDT)
- request ability to append in CatDCD (and NAMD) Andrew Jewett (Fri Aug 08 2008 - 14:15:46 CDT)
- Depth Cueing and dispdev none Oleg Stroganov (Thu Aug 07 2008 - 16:10:36 CDT)
- VMD files to SDF max_at_liaad.up.pt (Thu Aug 07 2008 - 05:20:59 CDT)
- Problems with Newcartoon representation Cesar Luis Avila (Wed Aug 06 2008 - 11:17:58 CDT)
- NAMDENERGY crashing repeatedly Chandra Ramananjara (Tue Aug 05 2008 - 09:27:12 CDT)
- How to reduce memory usage of a script? David Poger (Mon Aug 04 2008 - 20:31:10 CDT)
- How to embed 3-D image into powerpoint Claw Isthelaw (Mon Aug 04 2008 - 15:15:33 CDT)
- suggested video card for linux Burcin Temel (Mon Aug 04 2008 - 07:32:03 CDT)
- SURF and broken surface Vivek Sharma (Fri Aug 01 2008 - 23:16:14 CDT)
- ionize with VMD a TOP file rebeca_at_mmb.pcb.ub.es (Fri Aug 01 2008 - 07:14:40 CDT)
- vmd-rmsd-color-tool Bernhard Knapp (Fri Aug 01 2008 - 02:27:48 CDT)
- Re: namdenergy and simulation with amber ff Alan (Fri Aug 01 2008 - 02:05:23 CDT)
- problem using pbc wrap: broken molecule Jianhui Tian (Thu Jul 31 2008 - 20:32:47 CDT)
- Gromacs reading: Why scaling?? Nicolas Bigaouette (Thu Jul 31 2008 - 18:33:26 CDT)
- VMD crasch Lixia Jin Day (Thu Jul 31 2008 - 15:58:28 CDT)
- VMD with amber rst7 and parm7 files Alan (Thu Jul 31 2008 - 03:26:33 CDT)
- Hot repl1ca w4tches from 2008 Villa Tory Mohr (Wed Jul 30 2008 - 21:06:33 CDT)
- How to disable automatic view rotations? Roman Petrenko (Wed Jul 30 2008 - 13:08:31 CDT)
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- Re: periodic boundary conditions (yes, i read the tutorials) Roman Petrenko (Mon Jul 28 2008 - 19:50:12 CDT)
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- Re: Selecting the sides of a benzene ring Ignacio Fernández Galván (Wed Jul 23 2008 - 02:39:23 CDT)
- Re: Selecting the sides of a benzene ring Axel Kohlmeyer (Wed Jul 23 2008 - 06:36:25 CDT)
- Re: Selecting the sides of a benzene ring John Stone (Wed Jul 23 2008 - 09:15:18 CDT)
- Re: Selecting the sides of a benzene ring Ignacio Fernández Galván (Wed Jul 30 2008 - 02:24:58 CDT)
- Re: Selecting the sides of a benzene ring John Stone (Wed Jul 30 2008 - 10:31:50 CDT)
- Re: Selecting the sides of a benzene ring Ignacio Fernández Galván (Wed Jul 23 2008 - 02:39:23 CDT)
- Re: Selecting the sides of a benzene ring Schreiner Eduard (Tue Jul 22 2008 - 11:01:39 CDT)
- Re: Selecting the sides of a benzene ring Axel Kohlmeyer (Tue Jul 22 2008 - 11:45:54 CDT)
- Re: Selecting the sides of a benzene ring Eduardo Cruz-Chu (Tue Jul 22 2008 - 11:21:42 CDT)
- Problem to find the number of frames of a trajectory David Poger (Mon Jul 21 2008 - 20:19:01 CDT)
- Re: Problem to find the number of frames of a trajectory John Stone (Mon Jul 21 2008 - 23:50:56 CDT)
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- Missing angles and dihedrals Rene Prieto (Mon Jul 21 2008 - 18:25:52 CDT)
- You can s4ve 80% Villa Norberto Martinez (Mon Jul 21 2008 - 01:18:56 CDT)
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- Error message in VMD console when I try to switch to Python mode. Katherine Parra (Wed Jul 16 2008 - 13:16:28 CDT)
- Re: Error message in VMD console when I try to switch to Python mode. John Stone (Wed Jul 16 2008 - 13:28:55 CDT)
- Re: Error message in VMD console when I try to switch to Python mode. Katherine Parra (Wed Jul 16 2008 - 14:06:06 CDT)
- Re: Error message in VMD console when I try to switch to Python mode. John Stone (Wed Jul 16 2008 - 14:19:51 CDT)
- Re: Error message in VMD console when I try to switch to Python mode. Katherine Parra (Thu Jul 17 2008 - 09:13:14 CDT)
- Re: Error message in VMD console when I try to switch to Python mode. John Stone (Thu Jul 17 2008 - 09:21:29 CDT)
- Re: Error message in VMD console when I try to switch to Python mode. Katherine Parra (Thu Jul 17 2008 - 09:30:22 CDT)
- Re: Error message in VMD console when I try to switch to Python mode. John Stone (Thu Jul 17 2008 - 16:50:42 CDT)
- Re: Error message in VMD console when I try to switch to Python mode. Katherine Parra (Tue Jul 22 2008 - 11:07:56 CDT)
- Re: Error message in VMD console when I try to switch to Python mode. Katherine Parra (Wed Jul 16 2008 - 14:06:06 CDT)
- Re: Error message in VMD console when I try to switch to Python mode. John Stone (Wed Jul 16 2008 - 13:28:55 CDT)
- Creating a VMD movie from a Tcl script Samir Unni (Wed Jul 16 2008 - 09:32:37 CDT)
- Re: Creating a VMD movie from a Tcl script John Stone (Thu Jul 17 2008 - 17:02:05 CDT)
- Re: Creating a VMD movie from a Tcl script Samir Unni (Thu Jul 17 2008 - 21:18:24 CDT)
- Re: Creating a VMD movie from a Tcl script Samir Unni (Mon Jul 21 2008 - 07:57:59 CDT)
- Re: Creating a VMD movie from a Tcl script John Stone (Mon Jul 21 2008 - 10:31:28 CDT)
- Re: Creating a VMD movie from a Tcl script Samir Unni (Mon Jul 21 2008 - 11:35:51 CDT)
- Re: Creating a VMD movie from a Tcl script John Stone (Mon Jul 21 2008 - 11:44:58 CDT)
- Re: Creating a VMD movie from a Tcl script Samir Unni (Mon Jul 21 2008 - 12:16:53 CDT)
- Re: Creating a VMD movie from a Tcl script Axel Kohlmeyer (Mon Jul 21 2008 - 14:13:59 CDT)
- Re: Creating a VMD movie from a Tcl script Samir Unni (Mon Jul 21 2008 - 15:18:22 CDT)
- Re: Creating a VMD movie from a Tcl script Axel Kohlmeyer (Mon Jul 21 2008 - 12:01:22 CDT)
- Re: Creating a VMD movie from a Tcl script Samir Unni (Mon Jul 21 2008 - 12:22:20 CDT)
- Re: Creating a VMD movie from a Tcl script John Stone (Mon Jul 21 2008 - 12:46:17 CDT)
- Re: Creating a VMD movie from a Tcl script John Stone (Tue Jul 22 2008 - 13:51:41 CDT)
- Re: Creating a VMD movie from a Tcl script Axel Kohlmeyer (Mon Jul 21 2008 - 14:09:46 CDT)
- Re: Creating a VMD movie from a Tcl script Axel Kohlmeyer (Tue Jul 22 2008 - 15:59:42 CDT)
- Re: Creating a VMD movie from a Tcl script John Stone (Tue Jul 22 2008 - 16:16:15 CDT)
- Re: Creating a VMD movie from a Tcl script John Stone (Thu Jul 17 2008 - 17:02:05 CDT)
- Problem writing trajectory to "crd" (Amber) format? Ian (Wed Jul 16 2008 - 04:43:24 CDT)
- Fwd: memory overflow problem of Tcl scripting when dealing with trajectories(sorry for cross mailing...) bo liu (Wed Jul 16 2008 - 03:18:43 CDT)
- problem with correct visualization of residues L. Michel Espinoza-Fonseca (Tue Jul 15 2008 - 12:50:58 CDT)
- Re: problem with correct visualization of residues John Stone (Tue Jul 15 2008 - 13:04:18 CDT)
- Re: problem with correct visualization of residues L. Michel Espinoza-Fonseca (Tue Jul 15 2008 - 13:08:55 CDT)
- Re: problem with correct visualization of residues Axel Kohlmeyer (Tue Jul 15 2008 - 13:39:06 CDT)
- Re: problem with correct visualization of residues L. Michel Espinoza-Fonseca (Tue Jul 15 2008 - 13:44:13 CDT)
- Re: problem with correct visualization of residues L. Michel Espinoza-Fonseca (Tue Jul 15 2008 - 13:53:54 CDT)
- Re: problem with correct visualization of residues L. Michel Espinoza-Fonseca (Tue Jul 15 2008 - 13:08:55 CDT)
- Re: problem with correct visualization of residues Axel Kohlmeyer (Tue Jul 15 2008 - 13:21:57 CDT)
- Re: problem with correct visualization of residues John Stone (Tue Jul 15 2008 - 13:04:18 CDT)
- pick atom id script Abu Naser (Fri Jul 11 2008 - 06:07:05 CDT)
- purple bacteria and psfgen brosbam_at_berkeley.edu (Tue Jul 15 2008 - 12:37:30 CDT)
- Fwd: PDB Bonds versus "distance" bonds Sergey Ivanov (Tue Jul 15 2008 - 10:49:43 CDT)