VMD-L Mailing List
From: Nikhil Maroli (scinikhil_at_gmail.com)
Date: Fri Jul 29 2016 - 10:59:23 CDT
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Repost from namd-ml
Dear all,
i am calculating water permeation through nanotube which is embedded in
lipid bilayer . using flow.tcl i got results as
The net flow is 80.5 water molecules along -z
for the permeation.tcl script enter
The total number of permeation events during 1001 frames in +z direction
is: 0
The total number of permeation events during 1001 frames in -z direction
is: 0
i have changed limit as below for my channel length
# Specify the upper and lower boundaries of the nanotube layer
set upperEnd 17
set lowerEnd -17
total length of channel is 34
I can see water flow through channel using VMD so why it enter zero ?
Any advice
-- -- Regards, Nikhil Maroli
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