VMD-L Mailing List

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Starting: Thu Dec 19 1996 - 11:40:41 CST
Ending: Fri May 25 2012 - 14:34:06 CDT

$B:,>k(J $B6Q(J
- vizualization of modes (Tue Sep 30 2003 - 03:31:55 CDT)
- Re: ftp failed (Thu Aug 29 2002 - 03:21:12 CDT)
- Re: ftp failed (Tue Aug 27 2002 - 02:35:49 CDT)
Y. U. Sasidhar
- displaying hydrogen bonds when hydrogens are not available (Thu Jun 19 2008 - 07:34:23 CDT)
#WONG CHEE HOW#
- Fullerene coordinates (Fri Aug 27 2004 - 03:50:03 CDT)
- Colouring (Wed Jun 18 2003 - 01:02:39 CDT)
- RE: animation question (Fri Mar 28 2003 - 00:10:24 CST)
- Maximum number of atoms/bonds (Tue Jan 14 2003 - 19:04:54 CST)
- Loading XYZ trajectory file (Mon Dec 09 2002 - 19:17:00 CST)
- Problems with color (Mon Nov 11 2002 - 09:52:17 CST)
- Beta color of atoms (Thu Nov 07 2002 - 19:57:26 CST)
- RE: VMD 1.8 alpha 29 available for testing! (Fri Nov 01 2002 - 22:48:10 CST)
- RE: VMD 1.8 alpha 29 available for testing! (Fri Nov 01 2002 - 22:47:01 CST)
- Coloring of atoms/molecules (Thu Oct 31 2002 - 23:24:13 CST)
- How to show the strain energies of each atom (Thu Sep 19 2002 - 02:36:27 CDT)
.
- VMD 1.2b2 Linux & MSMS ... (Sun May 17 1998 - 08:55:16 CDT)
04215287d_at_polyu.edu.hk
- .pdb file from XMD (Thu Nov 02 2006 - 08:39:44 CST)
1(484)993-7152 Marty
- ! Obtain degrees from Prestigious non-accredite dUniversities (Sat Jun 23 2007 - 01:45:28 CDT)
3D SIG
- May 18th, Late abstract submission deadline for 3Dsig Structural Bioinformatics & Computational Biophysics (Wed May 11 2011 - 16:57:22 CDT)
- 3Dsig 2011: Structural Bioinformatics & Computational Biophysics, Vienna, 15-16 July 2011 (abstract deadline May 1st) (Fri Apr 15 2011 - 14:38:03 CDT)
- 3Dsig 2011: Structural Bioinformatics & Computational Biophysics, Vienna, 15-16 July 2011 (abstract deadline May 1st). (Wed Mar 23 2011 - 06:15:19 CDT)
_at_huji.ac.il
- Re: sending arguments to tcl (Sun Feb 04 2007 - 02:21:02 CST)
- sending arguments to tcl (Thu Feb 01 2007 - 13:39:20 CST)
- Re: [Fwd: pdb from trajectory] some clarification (Wed Jan 24 2007 - 04:37:40 CST)
- [Fwd: pdb from trajectory] some clarification (Tue Jan 23 2007 - 09:41:49 CST)
- pdb from trajectory (Tue Jan 23 2007 - 09:16:29 CST)
- Re: [Fwd: Re: create new topology file for new molecule] (Wed Jan 10 2007 - 03:01:50 CST)
- create new topology file for new molecule (Tue Jan 09 2007 - 10:06:25 CST)
- recenter peptide in PBC (Tue Dec 26 2006 - 04:54:20 CST)
- vmd questions (Thu Dec 21 2006 - 05:09:59 CST)
a a
- FW: How to set VMD_Plugin_path? (Sat Mar 31 2012 - 23:25:30 CDT)
- Re: redhat linux vmd (Mon May 22 2006 - 21:18:43 CDT)
- redhat linux vmd (Mon May 22 2006 - 03:51:59 CDT)
A D
- MDFF plug-in (Fri Mar 05 2010 - 15:09:06 CST)
- VMD version 1.8.7 (LINUX OpenGL, CUDA) on UBUNTU 9.10 (Mon Jan 25 2010 - 13:50:06 CST)
- PBCTools-problem getting unitcell parameters (Thu Nov 12 2009 - 19:40:31 CST)
- How to translate my diffused protein back to COM? (Mon Oct 05 2009 - 18:20:15 CDT)
- animate read and write (Wed Apr 22 2009 - 15:36:00 CDT)
- putting a set of selections in a list or an array (Sun Jan 11 2009 - 12:14:08 CST)
- vmd shuts itself down (Thu Jun 26 2008 - 19:20:58 CDT)
A. M. Carmen Pérez
- Compatibility with Orcad (PSpice) ? (Thu Sep 16 2010 - 05:06:29 CDT)
AA
- XYZ trajectory with different atom types? (Fri Jan 16 2009 - 13:21:15 CST)
Aaron Oakley
- measure sasa (Wed Feb 29 2012 - 17:50:08 CST)
- Implicit Ligand Sampling-molecule rotation issue (Sun Jan 08 2012 - 18:30:08 CST)
- Re: Maximum length of an extended peptide? (Tue Nov 15 2011 - 20:58:20 CST)
- Maximum length of an extended peptide? (Tue Nov 15 2011 - 17:53:14 CST)
- Xenon binding site free energies (Thu Oct 27 2011 - 01:30:23 CDT)
- RE: trajectory of water within 5 A of protein (Tue May 10 2011 - 05:47:47 CDT)
- Re: Issues with Paratools and Gaussian (Tue Jan 11 2011 - 19:57:49 CST)
- PMF vs distance plot from isosurface (Tue Dec 14 2010 - 22:17:48 CST)
- ILS tool fails (Fri Jul 09 2010 - 20:25:38 CDT)
- Script to rendering ANISOU records in VMD (Tue Jun 19 2007 - 21:22:51 CDT)
- Compute B-factor from MD run (Fri Sep 12 2003 - 03:02:42 CDT)
- protein/carbohydrate (Tue Sep 02 2003 - 03:07:53 CDT)
- protein/carbohydrate (Fri Aug 08 2003 - 22:48:54 CDT)
Aaron.Oakley_at_csiro.au
- RE: How to get rid of default patch for NTER and CTER (Sun Jan 18 2009 - 19:24:36 CST)
- RE: B factor calculation (Tue Nov 04 2008 - 16:27:02 CST)
- contour plots (Wed Jul 09 2008 - 22:50:54 CDT)
- problem loading trajectory in VMD under windows XP (Tue Jun 10 2008 - 18:41:24 CDT)
AB
- problem to render .cms file (Thu Aug 04 2011 - 02:11:34 CDT)
- vmd 1.9 sur doesn't work (Tue Aug 02 2011 - 13:58:43 CDT)
ABEL Stephane 175950
- RE : use gelato render with VMD 1.8.7 for movie (Fri Dec 03 2010 - 12:18:26 CST)
- RE : Plot the value of the current frame in the Progress Bar for elapsed Time (Thu Dec 02 2010 - 12:15:22 CST)
- Plot the value of the current frame in the Progress Bar for elapsed Time (Thu Dec 02 2010 - 09:51:44 CST)
- TR : Plot a time line in the movie made with VMD (Thu Dec 02 2010 - 06:48:01 CST)
- use gelato render with VMD 1.8.7 for movie (Thu Dec 02 2010 - 06:22:36 CST)
- Plot a time line in the movie made with VMD (Wed Dec 01 2010 - 11:08:39 CST)
- Time line (Tue Nov 30 2010 - 08:55:05 CST)
- RE : plot residues without hydrogen atoms (Tue May 20 2008 - 11:11:46 CDT)
- plot residues without hydrogen atoms (Tue May 20 2008 - 07:02:41 CDT)
- problem with time line plugin in VMD (Fri Jan 18 2008 - 03:36:30 CST)
Abi Ghanem josephine
- Draw a circle (Fri Mar 23 2007 - 09:47:12 CDT)
abinayar_at_imsc.res.in
- rmsf to b-factor conversion (Wed Mar 07 2012 - 04:06:29 CST)
- incorrect number of coordinates in .dcd file error (Tue Feb 21 2012 - 00:53:08 CST)
Abu Naser
- movie (Sun Nov 09 2008 - 11:06:20 CST)
- pick atom id script (Fri Jul 11 2008 - 06:07:05 CDT)
- RE: (Thu Jul 10 2008 - 11:23:19 CDT)
- (no subject) (Thu Jul 10 2008 - 10:43:17 CDT)
accomp lin
- atom name can not exceed four characters in pdb and psf? (Mon Jun 29 2009 - 21:59:36 CDT)
- Can bonds radius be controlled by tcl command? (Wed May 13 2009 - 03:54:47 CDT)
- Re: installed plugin won't show up next time (Fri Apr 24 2009 - 04:59:22 CDT)
- installed plugin won't show up next time (Thu Apr 23 2009 - 06:58:38 CDT)
- How to use " segment " in tcl script. (Wed Mar 11 2009 - 01:31:13 CDT)
accutone_at_atlsky.com
- 99 Toyotas as low as 2% over invoice (Sat Sep 05 1998 - 19:10:53 CDT)
Ada Zhan
- Timeline plugin (Thu Aug 11 2011 - 19:12:01 CDT)
- RE: ParseFEP_domain error (Tue Apr 26 2011 - 15:02:24 CDT)
- RE: RE: New NAMD version 2011-03-03 uses (Fri Apr 22 2011 - 16:04:52 CDT)
- ParseFEP_domain error (Fri Apr 22 2011 - 14:50:57 CDT)
- RE: New NAMD version 2011-03-03 uses (Fri Apr 22 2011 - 13:35:30 CDT)
Adam Kraut
- Render surface colored by electrostatic potential (Tue Oct 28 2008 - 13:27:52 CDT)
Adam Kubach
- docking (Wed Sep 29 2004 - 20:20:38 CDT)
- Phantom and VMD (Mon Sep 20 2004 - 15:18:18 CDT)
Adam Marcus
- Copying a selection (Mon Mar 22 2004 - 01:04:29 CST)
Adelene Sim
- Plotting Number of Hbonds and % Helicity with Time (Sat Nov 11 2006 - 18:11:22 CST)
adil mughal
- Re: run_vmd_tmp: Permission denied (Thu Apr 22 2010 - 11:38:37 CDT)
- run_vmd_tmp: Permission denied (Tue Apr 20 2010 - 10:37:09 CDT)
Adilah Hussien
- Tracking bond length changes in a simulation (Tue Jun 19 2007 - 04:33:22 CDT)
Aditya Padhi
- Hydrogen bond energy calculation (Wed May 23 2012 - 22:56:10 CDT)
- H-bond distance measurement (Tue Nov 01 2011 - 03:53:57 CDT)
- SASA calculation (Mon May 09 2011 - 05:26:36 CDT)
Adkins, Laura R
- RE: Atom ID/Color change with timesteps (Thu May 12 2011 - 16:04:26 CDT)
- Atom ID/Color change with timesteps (Wed May 11 2011 - 19:17:05 CDT)
Adrain Koh
- Apologies (Wed Nov 10 2004 - 04:12:55 CST)
- Conversion of trajectory files (Tue Nov 09 2004 - 21:43:52 CST)
- Re: Converting .txt trajectory files to VMD compatible format (Tue Nov 09 2004 - 21:40:18 CST)
- Converting .txt trajectory files to VMD compatible format (Fri Nov 05 2004 - 04:43:40 CST)
Adrian E. Roitberg
- pdb naming convention (Wed Apr 17 2002 - 07:59:32 CDT)
- Re: New version of VMD movie script/plugin available (Wed Mar 13 2002 - 07:22:32 CST)
- immersadesk (Tue Apr 16 2002 - 09:06:25 CDT)
Adrian Jasiñski
- paratool CHARMM style charges (Tue Dec 27 2011 - 08:24:49 CST)
Adrian Kaats
- Re: How to see the original Origin (0,0,0, coordinate) of a system (Thu Mar 27 2008 - 15:56:52 CDT)
- Re: Loading a PDB file with different atom counts in models (Tue Mar 25 2008 - 07:41:38 CDT)
- Loading a PDB file with different atom counts in models (Fri Mar 21 2008 - 09:19:35 CDT)
- atomselect protein (Thu Mar 20 2008 - 16:39:54 CDT)
- ion 'channel axis' (Wed Mar 28 2007 - 15:55:17 CDT)
- OmpF biological unit (Thu Mar 15 2007 - 18:58:17 CDT)
- Re: Displaying biological unit revisited (Thu Nov 02 2006 - 14:23:41 CST)
- Displaying biological unit revisited (Tue Oct 31 2006 - 12:22:19 CST)
Adrian Koh
- RE: Displaying Counter alongside animation (Mon Feb 11 2008 - 03:08:44 CST)
- Displaying Counter Alongside Animation (Tue Feb 05 2008 - 00:20:36 CST)
- Assigning Color Codes for stress/force in .xyz trajectory files (Fri Feb 09 2007 - 00:08:26 CST)
- Re: VMD 1.8.3 works ok for 64-bit windows, but not VMD 1.8.5 (Thu Nov 23 2006 - 23:31:49 CST)
- VMD 1.8.3 works ok for 64-bit windows, but not VMD 1.8.5 (Thu Nov 23 2006 - 22:07:27 CST)
- Installing VMD Windows version on 64-bit Windows Environment (Tue Nov 21 2006 - 21:30:01 CST)
- Re: Altering Definition of Molecular Coloring Method (Mon Jul 31 2006 - 23:18:19 CDT)
- Altering Definition of Molecular Coloring Method (Mon Jul 31 2006 - 05:08:56 CDT)
- Movie Maker in VMD (Wed Jul 05 2006 - 04:30:49 CDT)
- Re: Renaming Molecule Names in existing .xyz trajectory files (Tue Jul 04 2006 - 23:07:57 CDT)
- Renaming Molecule Names in existing .xyz trajectory files (Tue Jul 04 2006 - 01:44:28 CDT)
- Changing Graphical Representations (Wed Jan 25 2006 - 00:15:54 CST)
- Adding New Color Definitions to Color Form (Tue Jan 24 2006 - 03:08:48 CST)
- Changing Default Settings for VMD Main Window (Thu Jan 19 2006 - 05:08:23 CST)
- Error Encountered in making vmdmovie (Tue May 03 2005 - 02:42:00 CDT)
- Re: Customizing VMD Sessions (Thu Apr 14 2005 - 06:03:41 CDT)
- Customizing VMD Sessions (Thu Apr 14 2005 - 02:49:19 CDT)
- Defining Bonds in .xyz file format (Wed Feb 16 2005 - 02:29:09 CST)
Adrian Roitberg
- align axes (Wed Jun 22 2011 - 14:17:50 CDT)
- CMYK (Tue Oct 30 2007 - 16:08:37 CDT)
- RNA (Mon May 14 2007 - 14:25:03 CDT)
- vmd/gaussian cubes (Fri Mar 02 2007 - 10:11:08 CST)
- question about rotations (Fri Feb 09 2007 - 08:33:34 CST)
- Volume Slice (Wed Jan 31 2007 - 15:07:45 CST)
- Re: visualising protein dynamics (Wed Jun 22 2005 - 16:57:47 CDT)
Adrian turjanski
- Clip (Wed Sep 28 2005 - 20:49:04 CDT)
- X error (Sun Sep 04 2005 - 16:00:59 CDT)
- Problems with VMD in Federa 4 (x86_64) (Sat Aug 27 2005 - 17:22:00 CDT)
Agarwal, Silvi
- IR Spectra plugin (Wed Sep 29 2010 - 10:59:59 CDT)
Agarwal, Silvi
- RE: pbc in water count (Sat Mar 06 2010 - 11:52:55 CST)
- pbc in water count (Thu Mar 04 2010 - 12:07:37 CST)
Agnieszka Sobkiewicz
- input file (Mon Aug 09 2010 - 06:41:18 CDT)
agustina_at_cabm.rutgers.edu
- waters selection (Mon Apr 18 2011 - 15:49:09 CDT)
Ahmed Nawar
- freevr tool transformation (Thu Jan 03 2008 - 00:28:31 CST)
- FreeVR wand (Tue Dec 04 2007 - 03:42:13 CST)
- Re: cave (Tue Nov 27 2007 - 01:00:42 CST)
- cave (Mon Nov 26 2007 - 06:12:41 CST)
- RE: Suspected SpamFR:RE: cave (Mon Nov 26 2007 - 00:54:23 CST)
- RE: cave (Sun Nov 25 2007 - 09:06:37 CST)
- cave (Thu Nov 22 2007 - 06:09:24 CST)
Ahmet Bakan
- Re: Problem with generating psf using CGENFF (Fri Apr 27 2012 - 11:27:08 CDT)
- Bug in VMD main? (Sat Mar 03 2012 - 12:25:05 CST)
- Re: movie out of principal component analysis (Wed Nov 23 2011 - 21:27:45 CST)
- NMWiz - a new VMD plugin (Tue Apr 12 2011 - 11:51:36 CDT)
- Re: Tcl plugin development and debugging (Tue Apr 12 2011 - 11:38:57 CDT)
- Re: Representation problem (Thu Oct 15 2009 - 12:16:26 CDT)
- Re: Representation problem (Tue Sep 29 2009 - 09:42:41 CDT)
- Representation problem (Mon Sep 28 2009 - 16:22:36 CDT)
- RE: Counting number of hydrogen bonds in the representation (Wed Sep 15 2004 - 07:44:29 CDT)
- RE: Counting number of hydrogen bonds in the representation (Wed Sep 15 2004 - 03:39:56 CDT)
- Euro QSAR 2004 (Sun Sep 05 2004 - 15:42:27 CDT)
- RE: namd-l: cff91 force field in namd + A Question (Wed Aug 25 2004 - 10:53:59 CDT)
- How to enable Python on Windows XP (Fri Jul 30 2004 - 16:30:09 CDT)
- Average coordinates (Thu Jun 24 2004 - 13:51:12 CDT)
- RE: Torsional Angles (Mon May 31 2004 - 15:54:52 CDT)
- RE: Torsional Angles (Sun May 30 2004 - 19:41:49 CDT)
- Torsional Angles (Wed May 26 2004 - 13:52:53 CDT)
- RE: measuring distances in vmd tkon (Thu May 06 2004 - 17:45:21 CDT)
- RE: Selection problem on TkCon (Tue May 04 2004 - 18:57:39 CDT)
- RE: Selection problem on TkCon (Tue May 04 2004 - 06:47:55 CDT)
- RE: Selection problem on TkCon (Mon May 03 2004 - 13:42:43 CDT)
- RE: Selection problem on TkCon (Mon May 03 2004 - 05:56:25 CDT)
- Selection problem on TkCon (Sun May 02 2004 - 19:55:43 CDT)
- RE: MOE discussion (Wed Apr 28 2004 - 17:26:07 CDT)
- TCL string operation (Sat Apr 03 2004 - 07:48:40 CST)
- Sine Cosine (Sat Mar 13 2004 - 18:06:04 CST)
- RE: Rotatind a chain (some further Qs) (Fri Mar 12 2004 - 13:43:41 CST)
- Rotatind a chainn (Fri Mar 12 2004 - 08:59:09 CST)
ahmet yýldýrým
- gromacs trajectory file (Thu May 03 2012 - 01:49:13 CDT)
- removing all water molecules (Thu Jan 27 2011 - 06:51:34 CST)
ailong
- antialiasing problem (Thu Nov 20 2003 - 12:54:22 CST)
aiswarya pawar
- radial pair distribution problems (Wed Sep 21 2011 - 01:27:50 CDT)
- calculate the solvent molecule within a cut off from protein (Thu Sep 15 2011 - 05:36:25 CDT)
Aitor Gonzalez
- Re: bond length definition (Wed Apr 25 2001 - 04:41:32 CDT)
- Re: animation and reps (Mon Apr 09 2001 - 08:17:52 CDT)
- python vmd interface (Thu Mar 29 2001 - 08:57:32 CST)
- Re: python loop (Fri Mar 16 2001 - 12:39:34 CST)
- python loop (Fri Mar 16 2001 - 04:40:38 CST)
- Re: switching off the location axes (Fri Mar 09 2001 - 03:10:03 CST)
- switching off the location axes (Fri Mar 09 2001 - 02:48:53 CST)
- Re: making a movie with a serie of pdb's (Fri Dec 08 2000 - 05:26:00 CST)
- making a movie with a serie of pdb's (Thu Dec 07 2000 - 06:51:07 CST)
aizoon_at_gmx.net
- Arbitrary values of isosurface (Mon Oct 19 2009 - 06:25:32 CDT)
Ajasja LjubetiÄ
- Re: cg_bonds.tcl (Sat May 19 2012 - 15:07:20 CDT)
- Re: how to calculate PBC box volume in VMD? (Thu May 17 2012 - 02:25:15 CDT)
- Re: lib/stride/README (Tue Mar 20 2012 - 02:39:29 CDT)
- Re: Memory used by VMD is much less than installed (Wed Mar 07 2012 - 07:11:22 CST)
- Re: Adsorption VMD Tcl script error (Wed Feb 29 2012 - 16:09:59 CST)
- Re: incorrect number of coordinates in .dcd file error (Tue Feb 21 2012 - 02:17:37 CST)
- Re: Stand-alone VMD ? (Fri Feb 10 2012 - 07:29:36 CST)
- Re: how to display the full molecule when use "within" option? (Fri Feb 03 2012 - 06:21:29 CST)
- Re: NewRibbons/NewCartoon problem due to missing CUDA ? (Tue Jan 31 2012 - 08:32:01 CST)
- Re: how to enlarge the menu font? (Fri Jan 27 2012 - 01:29:11 CST)
- Re: VMD 1.9.1 beta 2 to be posted tonight... (Thu Jan 26 2012 - 07:06:28 CST)
- Re: VMD 1.9.1 beta 2 to be posted tonight... (Thu Jan 26 2012 - 03:04:29 CST)
- Re: script to modify cysteines with spinlabel (Tue Jan 24 2012 - 13:35:22 CST)
- Re: is it possible to hide ONLY non-polar hydrogens? (Fri Jan 20 2012 - 04:49:36 CST)
- Re: New "surf" calculations in VMD 1.9.1 beta (Wed Jan 18 2012 - 07:17:32 CST)
- Re: Using threads in VMD's tcl (Tue Jan 17 2012 - 12:40:13 CST)
- Re: Re: vmd 1.9.1 beta - quicksurf rendering artifacts (Wed Jan 04 2012 - 13:52:28 CST)
- Re: vmd 1.9.1 beta - quicksurf rendering artifacts (Wed Jan 04 2012 - 05:28:06 CST)
- vmd 1.9.1 beta - quicksurf rendering artifacts (Wed Jan 04 2012 - 05:08:18 CST)
- Re: Tachyon render problem (Fri Dec 09 2011 - 08:22:26 CST)
- Re: Coloring particular atom with particular index (Wed Dec 07 2011 - 12:57:42 CST)
- Re: average structure script (Fri Nov 25 2011 - 11:09:59 CST)
- Re: VMD never finishes reading vis. state file, stalls and hoggs CPU (Fri Nov 25 2011 - 05:05:32 CST)
- Re: VMD slows down at multiple windows (Tue Nov 15 2011 - 03:08:28 CST)
- Re: Secondary structure elements in VMD (Sat Nov 05 2011 - 03:00:01 CDT)
- Re: find avgstruct (Fri Nov 04 2011 - 06:03:16 CDT)
- Re: radius of gyration (Wed Nov 02 2011 - 16:14:59 CDT)
- Re: Locked files in Windows 7 (Thu Sep 22 2011 - 07:17:55 CDT)
- Re: Problem with measuring dihedrals (Tue Sep 20 2011 - 04:54:54 CDT)
- Re: how to rename a representation in vmd (Wed Aug 17 2011 - 05:11:31 CDT)
- Re: a file for commands of console (Sat Jul 30 2011 - 09:40:23 CDT)
- Re: creating chiral molecules (Thu Jul 28 2011 - 05:09:29 CDT)
- Re: Understand a script (Tue Jul 26 2011 - 03:54:58 CDT)
- Re: loading saved state from command line (Tue Jul 26 2011 - 01:47:56 CDT)
- Re: Mutating a residue to a nonstandard amino acid (Wed Jul 20 2011 - 16:57:49 CDT)
- Re: script (Tue Jul 12 2011 - 13:01:26 CDT)
- Re: script (Tue Jul 12 2011 - 12:08:12 CDT)
- Does this work with VMD: Nvidia 3DVision Glasses + SyncMaster 2233RZ + GTX 580 + Win7? (Sat Jul 09 2011 - 17:06:19 CDT)
- Re: Changing representations on a per-atom per-timestep basis (Tue Jun 28 2011 - 12:48:11 CDT)
- Re: Molefacture: creating model helices (Mon Jun 27 2011 - 07:10:23 CDT)
- Re: protein-water RDF (Mon Jun 27 2011 - 03:05:03 CDT)
- Re: invisible files in windows (Thu Jun 16 2011 - 02:27:34 CDT)
- Re: VMD does not exit after running closest.tcl script in combination with bigdcd (Tue Jun 07 2011 - 09:02:10 CDT)
- Re: VMD does not exit after running closest.tcl script in combination with bigdcd (Tue Jun 07 2011 - 09:07:08 CDT)
- Re: Tachyon post-render commands under Win-XP (Mon Jun 06 2011 - 09:32:09 CDT)
- Re: use variable in atomselect (Sat May 28 2011 - 02:24:03 CDT)
- Re: use variable in atomselect (Fri May 27 2011 - 16:28:34 CDT)
- Re: trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 (Wed May 25 2011 - 05:57:10 CDT)
- Re: trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 (Tue May 24 2011 - 12:22:00 CDT)
- Re: trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 (Tue May 24 2011 - 09:48:15 CDT)
- Re: problem in overlapping atoms (Sun May 22 2011 - 05:52:14 CDT)
- Re: Displaying protein AND ligand from an amber trajectory (Fri May 20 2011 - 09:11:24 CDT)
- Re: hi to all (Tue May 17 2011 - 12:27:50 CDT)
- Re: PhD position in Computational Structural Biology at MPI Muenster (Fri May 13 2011 - 07:04:26 CDT)
- Re: Save molecule in pdb format (Sat Apr 30 2011 - 02:29:35 CDT)
- Re: Generate a PSF file for small, simple molecules (Fri Apr 01 2011 - 02:15:51 CDT)
- Re: measure dipole (Wed Mar 30 2011 - 09:16:21 CDT)
- Re: phi-psi plot (Mon Mar 28 2011 - 08:08:32 CDT)
- Re: size of box (Mon Mar 28 2011 - 02:50:18 CDT)
- Re: Problem with using bigdcd.tcl (Mon Mar 21 2011 - 03:36:15 CDT)
- Re: script for projection of c-alpha atom cordinates on xy plane (Fri Mar 18 2011 - 15:23:12 CDT)
- Re: to block the information appearing during the run (Thu Mar 17 2011 - 08:16:14 CDT)
- Re: tcl script (Fri Mar 11 2011 - 10:17:15 CST)
- VMD beta3 windows installer (Wed Mar 09 2011 - 08:21:46 CST)
- Re: how to make default background color to white (Tue Mar 08 2011 - 10:29:54 CST)
- Re: Compiling on Windows (Fri Feb 18 2011 - 11:07:59 CST)
- Re: Compiling on Windows (Fri Feb 18 2011 - 04:03:41 CST)
- Re: PBC & Solvate Tool in VMD (Wed Feb 16 2011 - 03:20:25 CST)
- Re: bring z-axis along a new vector (Wed Feb 16 2011 - 03:00:01 CST)
- Re: Side-chain Dihedrals (Tue Feb 01 2011 - 16:13:36 CST)
- Re: Side-chain Dihedrals (Tue Feb 01 2011 - 14:46:23 CST)
- Re: Re: Trouble rendering tranparent atoms with Tachyon (Sat Jan 29 2011 - 06:42:06 CST)
- Re: removing all water molecules (Thu Jan 27 2011 - 07:37:57 CST)
- Re: Where can I download VMD alpha version (Sat Jan 15 2011 - 11:05:34 CST)
- Re: problem in extracting frame number (Thu Jan 13 2011 - 15:46:48 CST)
- Re: selection of amino acids with certain distance each others (Sun Dec 19 2010 - 14:07:03 CST)
- Re: delete water molecules (Fri Dec 17 2010 - 08:29:52 CST)
- Re: load of information on B factor as independent file (Tue Dec 14 2010 - 02:38:42 CST)
- Re: apocynin/1k4u (Tue Dec 07 2010 - 10:31:25 CST)
- Re: generating lipid membrane psf file (Sat Dec 04 2010 - 14:57:11 CST)
- Re: print numerical values in a Ramachandran plot (Wed Dec 01 2010 - 01:54:32 CST)
- Re: VASP crystal structure visualisation (Thu Nov 25 2010 - 14:57:13 CST)
- Re: VASP crystal structure visualisation (Thu Nov 25 2010 - 14:14:58 CST)
- Re: atom selection in vmd (Wed Nov 17 2010 - 10:25:55 CST)
- Re: Headtracking software (Tue Nov 16 2010 - 09:00:27 CST)
- Re: dynamic atom selection (Tue Nov 09 2010 - 08:06:58 CST)
- Re: Vega ZZ DCD trajectory crashes VMD (Tue Nov 09 2010 - 06:56:26 CST)
- Re: 3D protein visualization (Mon Nov 08 2010 - 15:10:33 CST)
- Re: vmd: Saving output (Mon Nov 01 2010 - 06:00:58 CDT)
- Re: Where to download Hbond plugin (Sun Oct 31 2010 - 05:50:10 CDT)
- Re: vmd: Tcl script help (Fri Oct 29 2010 - 15:10:54 CDT)
- Re: namd-I : Constraint failure in RATTLE algorithm for atom 268 (Fri Oct 29 2010 - 01:41:51 CDT)
- Re: Possible bug in freeing global selections (Thu Oct 28 2010 - 17:23:16 CDT)
- Re: Possible bug in freeing global selections (Thu Oct 28 2010 - 13:05:33 CDT)
- Re: Possible bug in freeing global selections (Thu Oct 28 2010 - 08:16:14 CDT)
- Possible bug in freeing global selections (Thu Oct 28 2010 - 06:56:02 CDT)
- Re: Vega ZZ DCD trajectory crashes VMD (Tue Oct 19 2010 - 11:56:26 CDT)
- Vega ZZ DCD trajectory crashes VMD (Tue Oct 19 2010 - 09:21:44 CDT)
- Re: Real-time ambient occlusion lighting (Wed Oct 13 2010 - 11:12:57 CDT)
- Re: Real-time ambient occlusion lighting (Wed Oct 13 2010 - 06:01:01 CDT)
- Real-time ambient occlusion lighting (Tue Oct 12 2010 - 15:54:00 CDT)
- Re: superimpose residues across several protein structures (Wed Sep 22 2010 - 08:57:04 CDT)
- Re: vmd can't display Pt-Cl bond (Mon Sep 20 2010 - 03:12:18 CDT)
- Re: turning on the tcl/tk console in .vmdrc (Tue Sep 14 2010 - 07:47:49 CDT)
- Re: Anaglyph rendering problem (Mon Sep 13 2010 - 08:55:39 CDT)
- Anaglyph rendering problem (Mon Sep 13 2010 - 03:50:27 CDT)
- Re: How to set the default mol style as VDW? (Fri Sep 03 2010 - 06:36:08 CDT)
- Re: Using Bigdcd with RMSD Trajectory tool in VMD (Tue Aug 31 2010 - 05:42:16 CDT)
- Re: DCD Based on a parameter (Thu Aug 26 2010 - 10:12:42 CDT)
- Re: (Sat Aug 21 2010 - 02:14:19 CDT)
- Re: Problem Material Studio/VMD (Wed Aug 11 2010 - 03:48:44 CDT)
- Re: Inserting amino acids to a protein (Fri Aug 06 2010 - 02:40:35 CDT)
- Re: Dihedrals Angle (Thu Jul 29 2010 - 02:13:30 CDT)
- Re: "can not find channel named ... (Wed Jul 28 2010 - 05:04:28 CDT)
- Re: Modifying amino acid to a non-standard amino acid using VMD (proline to hydroxyproline) (Fri Jul 09 2010 - 02:33:13 CDT)
- Re: calculate side-chain dihedral/torsion angles (Tue Jun 29 2010 - 09:14:08 CDT)
- Re: namd-l: Simulation configuration file not accesible (Fri Jun 25 2010 - 16:19:34 CDT)
- Re: Deleting/modifying specific molecule representations (Wed Jun 02 2010 - 11:53:00 CDT)
- Re: How to remove hydrogens from a pdb file? (Fri May 07 2010 - 02:45:30 CDT)
- Re: problem with "animate delete all" (Wed May 05 2010 - 02:44:02 CDT)
- Re: calculate side-chain dihedral/torsion angles (Mon Apr 12 2010 - 14:24:17 CDT)
- Re: calculate side-chain dihedral/torsion angles (Mon Apr 12 2010 - 12:36:36 CDT)
- Re: calculate side-chain dihedral/torsion angles (Mon Apr 12 2010 - 08:45:13 CDT)
- Re: calculate side-chain dihedral/torsion angles (Mon Apr 12 2010 - 06:38:16 CDT)
- calculate side-chain dihedral/torsion angles (Mon Apr 12 2010 - 03:43:25 CDT)
- Re: Turn off initial VMD animation and "menu tkcon on" problem (Fri Apr 09 2010 - 09:12:05 CDT)
- AutoHotkey script for managing VMD windows (Fri Apr 09 2010 - 07:56:42 CDT)
- Turn off initial VMD animation and "menu tkcon on" problem (Fri Apr 09 2010 - 07:18:57 CDT)
- Re: build dependency (Fri Apr 09 2010 - 03:43:19 CDT)
- Re: Visualisation of VTF trajectories using VMD under Windows ? (Wed Mar 24 2010 - 11:29:10 CDT)
- Re: implicit solvent (Tue Mar 23 2010 - 10:57:54 CDT)
- Re: Selecting AMBER ions Cl- and Na+ using VMD (Wed Mar 17 2010 - 09:31:12 CDT)
- Re: CUDA out of memory (Mon Mar 15 2010 - 04:41:14 CDT)
- CUDA out of memory (Fri Mar 12 2010 - 08:22:40 CST)
- Re: WIN64 build (Fri Mar 12 2010 - 07:46:55 CST)
Ajasja Ljubetiè
- Re: tcl script (Fri Mar 11 2011 - 14:12:52 CST)
- Re: Trouble rendering tranparent atoms with Tachyon (Fri Jan 28 2011 - 09:06:11 CST)
- Re: Visualisation of VTF trajectories using VMD under Windows ? (Mon Mar 29 2010 - 08:09:36 CDT)
Ajeeta kaushiki
- Re: script for area per lipid (Tue Mar 09 2010 - 05:04:27 CST)
- VMD 1.8.7 installation problem (Mon Jul 20 2009 - 06:55:41 CDT)
Ajith Gunaratne
- (no subject) (Sun Apr 11 2004 - 23:36:05 CDT)
Ajith Rathnaweera Rajapaksha Mudalige
- Using Measure SASA in NAMD Simulation (Mon Apr 16 2012 - 18:54:32 CDT)
Akemi Matsuno-Yagi
- Re: bonds not created as desired (Tue Jun 09 2009 - 15:09:25 CDT)
- bonds not created as desired (Tue Jun 09 2009 - 13:01:09 CDT)
Akemi Yagi
- Main window (button bars) does not start (Tue May 14 2002 - 10:02:18 CDT)
Akiyama, Jotaro
- Re: Coloring by type? (Fri Nov 12 2004 - 02:45:10 CST)
- Re: Coloring by type? (Thu Nov 11 2004 - 18:56:02 CST)
- Re: LAMMPS visualization (Thu Nov 11 2004 - 18:27:15 CST)
- Coloring by type? (Mon Nov 08 2004 - 03:06:34 CST)
Akshay Patny
- RE: measure XYZ dimensions of a system (Wed Jan 24 2007 - 12:47:47 CST)
- measure XYZ dimensions of a system (Wed Jan 24 2007 - 10:47:00 CST)
- cutting short a DMPC bilayer in VMD (Thu Oct 05 2006 - 21:23:43 CDT)
- VMD PDB to LEAP Readable PDB (Wed Oct 04 2006 - 20:09:14 CDT)
- Solvate Plug-In -b Boundary variable (Thu Sep 21 2006 - 10:18:10 CDT)
- which POPC Bilayer is better to start? (Wed Sep 20 2006 - 16:40:07 CDT)
- GPCR-Membrane Issue (Wed Sep 20 2006 - 12:29:49 CDT)
- RE: Centering GPCR onto Lipid Bilayer (Tue Sep 19 2006 - 16:19:59 CDT)
- Centering GPCR onto Lipid Bilayer (Mon Sep 18 2006 - 14:28:35 CDT)
- FW: Membrane PlugIn issue (Sat Sep 16 2006 - 14:20:23 CDT)
- RE: DPPC Bilayer Size (Fri Sep 15 2006 - 12:07:51 CDT)
- DPPC Bilayer Size (Thu Sep 14 2006 - 13:49:06 CDT)
- RE: protein in membrane (Tue Sep 12 2006 - 16:05:04 CDT)
- RE: protein in membrane (Tue Sep 12 2006 - 15:45:31 CDT)
Al Courey
- rendering high resolution images (Mon Apr 24 2006 - 16:19:52 CDT)
Al-Ali, Hassan
- C-terminus link to side chain amine (Tue Oct 12 2010 - 08:33:46 CDT)
- Link Patch? (Fri Oct 08 2010 - 23:39:15 CDT)
- Ubiquitin - patch? (Thu Oct 07 2010 - 22:33:23 CDT)
- K-linked Ub, ACE patch, and autoPSF (Tue Oct 05 2010 - 22:49:42 CDT)
- K-linked Ub, ACE patch, and autoPSF (Tue Oct 05 2010 - 22:49:37 CDT)
- K-linked Ub, ACE patch, and autoPSF (Tue Oct 05 2010 - 22:49:34 CDT)
- RE: Vmd on Fedora 9 (Wed Jul 30 2008 - 19:16:09 CDT)
- RE: Vmd on Fedora 9 (Wed Jul 30 2008 - 15:12:38 CDT)
- Vmd on Fedora 9 (Wed Jul 30 2008 - 11:43:28 CDT)
Al-Rawi, Ahlam
- external force (Tue Oct 24 2006 - 11:41:54 CDT)
- external force (Wed Oct 18 2006 - 19:33:51 CDT)
- RE: psf for protein (Tue Sep 19 2006 - 12:03:55 CDT)
- psf for protein (Mon Sep 18 2006 - 17:24:27 CDT)
- Water and protein (Wed May 03 2006 - 13:40:44 CDT)
alamng_at_uci.edu
- Replica Exchange (Fri Apr 15 2011 - 02:35:05 CDT)
- ParaTool (Sat Feb 19 2011 - 15:43:36 CST)
Alan
- Re: namdenergy and simulation with amber ff (Fri Aug 01 2008 - 02:05:23 CDT)
- VMD with amber rst7 and parm7 files (Thu Jul 31 2008 - 03:26:33 CDT)
Alan Wilter Sousa da Silva
- Re: secondary structure update (Mon Nov 03 2003 - 04:16:27 CST)
- nvidia driver (Tue Sep 30 2003 - 09:30:48 CDT)
- Re: Python's future in VMD (Tue Sep 30 2003 - 07:48:28 CDT)
- Re: stereo (Wed May 28 2003 - 13:02:00 CDT)
- Re: Surfaces/Cavities (Thu Jan 23 2003 - 06:21:18 CST)
- Re: Which drawing method is used in the picture? (Wed Apr 10 2002 - 10:20:05 CDT)
- Re: Plotting elect. pot. surface (Wed Mar 13 2002 - 08:05:14 CST)
- Re: New version of VMD movie script/plugin available (Wed Mar 13 2002 - 07:58:33 CST)
- Molscript (Wed Mar 13 2002 - 07:32:50 CST)
- Re: Removing perspective projection at startup (Thu Feb 28 2002 - 12:27:47 CST)
- Re: Plotting elect. pot. surface (Tue Feb 26 2002 - 14:16:22 CST)
- Re: Plotting elect. pot. surface (Mon Feb 25 2002 - 14:40:57 CST)
- Plotting elect. pot. surface (Mon Feb 25 2002 - 12:15:52 CST)
alarcon_at_lncc.br
- STL files (Thu Jul 17 2003 - 11:07:02 CDT)
- STL format file - rendering (Thu Dec 19 2002 - 13:39:20 CST)
Alba Colet Subirachs
- VMD 3D stereo hardware (Thu Mar 06 2008 - 03:16:25 CST)
- VMD languaje information (Tue Mar 04 2008 - 10:24:09 CST)
Albert
- how to calculate PBC box volume in VMD? (Thu May 17 2012 - 01:26:36 CDT)
- PBC missed in Amber MD (Thu May 10 2012 - 02:53:00 CDT)
- what's the Letter in figure caption meaning of TIME-LINE 2nd structure present? (Mon May 07 2012 - 10:07:43 CDT)
- Re: an old question (Tue Apr 10 2012 - 14:23:16 CDT)
- Re: an old question (Tue Apr 10 2012 - 00:08:23 CDT)
- Re: an old question (Mon Apr 09 2012 - 23:36:16 CDT)
- an old question (Sat Apr 07 2012 - 00:28:29 CDT)
- Re: python error? (Mon Apr 02 2012 - 14:17:08 CDT)
- python error? (Mon Apr 02 2012 - 11:28:14 CDT)
- Re: load propka3.1 results error (Tue Mar 13 2012 - 00:35:36 CDT)
- Re: load propka3.1 results error (Mon Mar 12 2012 - 16:18:11 CDT)
- Re: load propka3.1 results error (Mon Mar 12 2012 - 15:40:12 CDT)
- load propka3.1 results error (Mon Mar 12 2012 - 15:24:37 CDT)
- how to configure PROPKA3 in VMD 1.91? (Mon Mar 12 2012 - 15:11:39 CDT)
- Re: how to place a membrane protein with OPM ? (Wed Feb 29 2012 - 23:54:00 CST)
- Re: how to place a membrane protein with OPM ? (Wed Feb 29 2012 - 23:54:35 CST)
- how to place a membrane protein with OPM ? (Wed Feb 29 2012 - 15:33:44 CST)
- Re: problem with catdcd (Sun Feb 12 2012 - 08:24:29 CST)
- PROPKA doesn't work in recent VMD1.9.1 (Sun Feb 12 2012 - 05:25:14 CST)
- problem with catdcd (Sun Feb 12 2012 - 02:23:40 CST)
- how to display the full molecule when use "within" option? (Fri Feb 03 2012 - 05:31:10 CST)
- how to measure residues' chi angle in VMD? (Thu Feb 02 2012 - 03:34:27 CST)
- how to merge two PDB trajectories? (Wed Feb 01 2012 - 23:34:31 CST)
- is it possible to enable GPU rendering? (Wed Feb 01 2012 - 14:04:02 CST)
- how to configure Tachyon image render size? (Mon Jan 30 2012 - 11:52:02 CST)
- problem with new plugin installation. (Sat Jan 28 2012 - 08:08:16 CST)
- problem with new plugin installation. (Sat Jan 28 2012 - 01:18:14 CST)
- Re: how to enlarge the menu font? (Fri Jan 27 2012 - 01:33:48 CST)
- how to enlarge the menu font? (Fri Jan 27 2012 - 00:18:36 CST)
- is it possible to hide ONLY non-polar hydrogens? (Fri Jan 20 2012 - 03:54:32 CST)
albert albert
- removed all proton in protein with vmd (Mon Jul 27 2009 - 01:40:34 CDT)
Albert Sun
- Re: Picking atoms: romoving or changing the position of atoms (Mon Jul 19 2004 - 11:51:50 CDT)
- Picking atoms: romoving or changing the position of atoms (Sun Jul 18 2004 - 09:17:00 CDT)
- could not make avi file (Tue Apr 13 2004 - 10:58:49 CDT)
- subscribe and questions (Fri Nov 14 2003 - 13:06:34 CST)
alberto baldelli
- view temperature, forces and velocities (Fri Mar 04 2011 - 09:35:18 CST)
Alberto Perez
- Re: complete residues within (Thu Mar 06 2008 - 04:38:02 CST)
Alberto Sergio Garay
- Problem using rotate command in a script ...(2) (Fri Jun 10 2011 - 07:10:05 CDT)
- Problem using rotate command in a script ...(2) (Thu Jun 09 2011 - 13:11:01 CDT)
- Problem using rotate command in a script .... (Thu Jun 09 2011 - 09:36:33 CDT)
- Problem using rotate in a script .... (Wed Jun 08 2011 - 10:33:49 CDT)
- Re: tcl script problem using -dispdev text .. (Fri Nov 19 2010 - 04:33:33 CST)
- tcl script problem using -dispdev text .. (Thu Nov 18 2010 - 07:12:46 CST)
- Is it possible to load a part of a big xtc file faster... (Wed Aug 18 2010 - 09:44:56 CDT)
- Question about running tcl/tk script without graphic interface (vmd option -dispdev none ...) (Fri Oct 16 2009 - 17:48:04 CDT)
- Re: Funny tcl/tk script behavior.... (Tue Jun 30 2009 - 12:08:32 CDT)
- Funny tcl/tk script behavior.... (Tue Jun 30 2009 - 08:02:57 CDT)
- Re: Problem using pbc wrap..... (Fri Jun 26 2009 - 15:01:35 CDT)
- Problem using pbc wrap..... (Fri Jun 26 2009 - 07:13:44 CDT)
- Memory Problem with tcl/tk script...(Solved!) (Thu Jun 04 2009 - 07:08:19 CDT)
- Memory Problem with tcl/tk script...(3) (Wed Jun 03 2009 - 14:17:07 CDT)
- Memory Problem with tcl/tk script...(2) (Wed Jun 03 2009 - 12:54:53 CDT)
- Memory Problem with tcl/tk script... (Tue Jun 02 2009 - 07:25:16 CDT)
- Question3 about introducing variables in "mol selection..." (Fri May 22 2009 - 16:47:25 CDT)
- Question2 about introducing variables in "mol selection..." (Fri May 22 2009 - 15:31:51 CDT)
- Question about introducing variables in "mol selection..." (Fri May 22 2009 - 10:06:54 CDT)
- VMD Animation example doesn't work... (Fri Dec 19 2008 - 06:52:05 CST)
- VMD Animation example doesn't work... (Tue Dec 16 2008 - 04:43:23 CST)
- rmsd per residue (Tue Jul 01 2008 - 05:36:46 CDT)
- Slow tcl/tk script for trajectory analysis (Fri May 16 2008 - 14:34:40 CDT)
Alberto Torres
- Color of bond betwen atoms with different colors (Fri May 16 2008 - 15:35:40 CDT)
aldo jongejan
- Babel and VMD (Tue Mar 03 1998 - 11:05:07 CST)
Ale Gomez
- Re: installation problem (Tue Dec 22 2009 - 20:54:29 CST)
- Re: vmd bug in ubuntu 9.10 (Wed Nov 11 2009 - 17:56:44 CST)
- Re: Align membrane (Fri Oct 16 2009 - 19:18:41 CDT)
- Align membrane (Fri Oct 16 2009 - 13:24:48 CDT)
- Lipid Membrane (Sun Oct 11 2009 - 22:58:08 CDT)
Alec Robertson
- Re: fglrx driver workaround? (Thu Mar 31 2005 - 10:18:45 CST)
- fglrx driver workaround? (Thu Mar 31 2005 - 09:53:21 CST)
Alejandro Ortega
- Re: TXT program editor (Fri Aug 29 2008 - 13:11:13 CDT)
- TXT program editor (Thu Aug 28 2008 - 14:43:14 CDT)
- Maximum velocities (Thu Jul 03 2008 - 16:03:13 CDT)
- Writepdb with Solvation Box (Tue May 06 2008 - 12:50:23 CDT)
- Topology file (Fri Apr 04 2008 - 11:24:14 CDT)
- DCD file (Fri Mar 07 2008 - 12:07:23 CST)
Aleksander Debinski
- lags on VDW (Mon Dec 12 2005 - 03:54:33 CST)
Aleksandr Kivenson
- How to parse very large trajectories? (Wed Nov 09 2011 - 14:41:55 CST)
Aleksei Aksimentiev
- Re: ellipsoidal particles (Mon May 03 2010 - 16:14:13 CDT)
- Postdoc position in computational biophysics and nanotehnology (Tue May 05 2009 - 14:28:20 CDT)
Alessandro Cembran
- Trajectory title (Wed Apr 16 2008 - 07:53:47 CDT)
- Re: how to visualize Charmm generated files (Wed Jun 06 2007 - 18:15:41 CDT)
- NAMD Energy - Hexagonal Cell (Mon Mar 12 2007 - 18:10:14 CDT)
- Re: namd-l: Re: ionize (big, big, big system!) (Mon Feb 12 2007 - 18:57:05 CST)
- Re: namd-l: Re: ionize (big, big, big system!) (Mon Feb 12 2007 - 11:37:20 CST)
Alessandro.Maiorana_at_roma2.infn.it
- Remove PBC (Sun Dec 21 2008 - 04:09:38 CST)
Alessio Alexiadis
- dipole (Wed Mar 19 2008 - 06:54:21 CDT)
- combine together two PBD/PSF files (Wed Nov 07 2007 - 07:38:42 CST)
- merge pbd psf files (update) (Wed Nov 07 2007 - 07:47:48 CST)
- time step (Wed Oct 03 2007 - 07:44:13 CDT)
- hbonds (how to count) (Wed Oct 03 2007 - 03:28:52 CDT)
Alex Angerhofer
- rendering question (Thu Jan 19 2012 - 10:56:59 CST)
Alex Hahn
- H Bond Plug-in Questions (Thu Sep 29 2011 - 11:53:13 CDT)
Alex Liu
- RMSF measurement (Wed Feb 23 2011 - 12:51:16 CST)
- average structure/solute and solvent (Wed Nov 24 2010 - 10:19:28 CST)
- average structure/solute and solvent (Tue Nov 23 2010 - 09:21:31 CST)
- Re: atom selection in vmd (Mon Nov 22 2010 - 16:16:45 CST)
- atom selection in vmd (Wed Nov 17 2010 - 08:49:55 CST)
Alex Vakhrouchev
- Re: console in vmd-1.8.3 amd64 is blank (like white text on white background) so I can't see any output messages (Tue Jun 07 2005 - 00:09:22 CDT)
Alexander A. Vakhrushev
- Re: Windows version: Loading/writing files (Mon Oct 13 2008 - 08:49:21 CDT)
- Re: Fw: VMD 1.8.6 for UBUNTU 8.04LTS (Wed Oct 08 2008 - 23:37:06 CDT)
- Re: Problems after installation (ubuntu 8.04) (Tue Oct 07 2008 - 12:08:35 CDT)
- Re: Problems after installation (ubuntu 8.04) (Tue Oct 07 2008 - 12:03:16 CDT)
- Re: Problems after installation (ubuntu 8.04) (Fri Oct 03 2008 - 22:55:52 CDT)
- Re: Problems after installation (ubuntu 8.04) (Fri Oct 03 2008 - 08:43:39 CDT)
- Re: water box (Tue Sep 30 2008 - 09:24:43 CDT)
- Re: water box (Tue Sep 30 2008 - 04:55:46 CDT)
- Re: question about sscache (Fri Sep 26 2008 - 22:41:50 CDT)
- Re: counting gas molecules inside the nanotube (Thu Sep 18 2008 - 12:11:04 CDT)
Alexander Balaeff
- Re: [VMD TECH] Tracing VMD Variables (Part II) (Thu May 01 1997 - 16:29:52 CDT)
- Re: RMSD (Sun Mar 18 2012 - 12:59:28 CDT)
- Re: ionic radii of sodium and chloride (Fri Jan 20 2012 - 13:59:55 CST)
- VMD stereo for NVidia Quadro 5000? (Mon Dec 19 2011 - 12:07:18 CST)
- Re: Assign velocities so I can color by velocity (Mon Dec 19 2011 - 11:37:36 CST)
- Files closing/Memory issues in VMD (Mon Feb 19 2007 - 14:03:54 CST)
Alexander Farley
- Re: Chromium (Sun Sep 08 2002 - 09:44:58 CDT)
- Re: stereo on linux: DTI monitors? (Sun Sep 08 2002 - 09:36:48 CDT)
Alexander Metz
- How to get rubber-like surface with Tachyon renderer (Mon Feb 25 2008 - 09:37:02 CST)
Alexander Peyser
- Re: VMD 1.8.2 and 1.8.3 fail on MacOS X after upgrade to 10.3.8 (Wed Mar 02 2005 - 12:45:30 CST)
- Re: User colors and povray (Wed Feb 23 2005 - 16:01:19 CST)
Alexander Spaar
- Re: AMBER pbsa electrostatic potential map (Tue Apr 19 2005 - 03:58:55 CDT)
- UHBD-grids (Fri Apr 15 2005 - 04:12:57 CDT)
Alexandr Bezginov
- Fullscreen mode in VMD (Tue Oct 07 2008 - 12:34:59 CDT)
Alexandr Isayev
- Re: MultiSeq on the windows vista OS (Mon Sep 24 2007 - 14:25:00 CDT)
- Re: Displaying the periodic box ... (Thu May 24 2007 - 10:59:08 CDT)
- Re: Tachyon renderer (Wed May 16 2007 - 23:40:54 CDT)
- count variable number of molecules (Wed Feb 28 2007 - 14:23:11 CST)
- Re: rendering time bars or other vmd added graphics with povray (Mon Feb 05 2007 - 11:23:12 CST)
- Re: Beginner's problem (Tue Nov 14 2006 - 12:01:36 CST)
- Re: .pdb file from XMD (Thu Nov 02 2006 - 09:18:20 CST)
- Re: CPK Graphical Representation (Fri Oct 20 2006 - 11:48:40 CDT)
- Re: movie (Wed Oct 11 2006 - 18:46:16 CDT)
- Re: puts format (Wed Sep 13 2006 - 16:18:04 CDT)
- Re: Movie Maker in VMD (Wed Jul 05 2006 - 10:27:02 CDT)
- Re: Making a Movie (Tue Jun 20 2006 - 13:07:45 CDT)
Alexandr Kornev
- NetCDF plugin (Tue Sep 20 2011 - 17:55:59 CDT)
alexandra.marques_at_fc.up.pt
- secondary_struct script (Wed Apr 18 2007 - 11:28:43 CDT)
- hbond calculation (Mon Mar 26 2007 - 15:49:19 CDT)
- hbonds problem (Sat Feb 17 2007 - 17:52:45 CST)
- Re: sasa by residue (Thu Jan 11 2007 - 13:42:07 CST)
- sasa by residue (Mon Jan 08 2007 - 19:01:04 CST)
- python (Sun Nov 12 2006 - 11:23:39 CST)
- Re: output file format (Fri Sep 01 2006 - 14:20:35 CDT)
- output file format (Thu Aug 31 2006 - 10:20:14 CDT)
- Re: water numbering (Mon Aug 28 2006 - 10:52:03 CDT)
- water numbering (Mon Aug 28 2006 - 06:50:33 CDT)
- gyration radius for a trajectory (Fri Aug 25 2006 - 05:38:06 CDT)
- large mdcrd files (Sun Aug 20 2006 - 07:56:30 CDT)
Alexandre A. Vakhrouchev
- Re: contour plots (Mon Jul 21 2008 - 02:25:51 CDT)
- Re: Away from VMD-L/email until July 8th... (Thu Jun 19 2008 - 21:09:17 CDT)
- Re: Dipole moment? (Sat Jun 07 2008 - 13:25:40 CDT)
- Dipole moment? (Sat Jun 07 2008 - 07:21:55 CDT)
- Re: Total list of Tcl features (Sat Jun 07 2008 - 10:31:31 CDT)
- Re: Total list of Tcl features (Sat Jun 07 2008 - 01:14:37 CDT)
- Total list of Tcl features (Sat Jun 07 2008 - 00:15:05 CDT)
- Re: Individual atoms trajectory (Fri May 16 2008 - 02:08:59 CDT)
- Re: Individual atoms trajectory (Fri May 16 2008 - 01:08:22 CDT)
- Energy plot script (Wed May 14 2008 - 22:11:19 CDT)
- Individual atoms trajectory (Wed May 14 2008 - 00:34:38 CDT)
- Re: Recompile VMD with larger index types (Sun May 11 2008 - 11:20:47 CDT)
- Recompile VMD with larger index types (Sat May 10 2008 - 07:36:43 CDT)
- Atomselect in loops (Fri Nov 24 2006 - 03:50:34 CST)
Alexandre Suman de Araujo
- Re: Does Paratool support CgenFF? (Wed Sep 28 2011 - 09:28:14 CDT)
- Re: Does Paratool support CgenFF? (Wed Sep 28 2011 - 08:39:04 CDT)
- Does Paratool support CgenFF? (Wed Sep 14 2011 - 07:22:33 CDT)
- Re: Problem with creation of child fragment in Molefacture (Wed Apr 21 2010 - 08:06:07 CDT)
- Re: Problem with creation of child fragment in Molefacture (Tue Apr 20 2010 - 20:04:05 CDT)
- Problem with creation of child fragment in Molefacture (Tue Apr 20 2010 - 14:04:31 CDT)
- Re: MergeStructs Plugin in text mode (Fri Mar 12 2010 - 13:40:03 CST)
- Re: MergeStructs Plugin in text mode (Thu Mar 11 2010 - 12:04:44 CST)
- Re: MergeStructs Plugin in text mode (Wed Mar 10 2010 - 06:03:01 CST)
- MergeStructs Plugin in text mode (Tue Mar 09 2010 - 12:24:46 CST)
- Problem using psfgen and carbohydrate charmm parameters. (Thu Oct 08 2009 - 16:19:26 CDT)
- Building polymer psf from monomer topology (Thu Jul 30 2009 - 14:48:13 CDT)
- Bug in molefacture proline residue of official version (1.8.6 LINUXAMD64) (Mon Feb 02 2009 - 12:51:46 CST)
- Problems to load Gaussian .log file in Paratool (Mon Jul 30 2007 - 13:05:56 CDT)
- Molecular Display component (Mon Mar 28 2005 - 10:56:17 CST)
- Adding Atoms in Colors Menu (Fri Apr 02 2004 - 03:33:52 CST)
Alexandre Vakhrouchev
- (no subject) (Wed Nov 19 2003 - 02:11:14 CST)
- Re: POV-Ray (Wed Nov 12 2003 - 03:33:03 CST)
- (no subject) (Thu Nov 06 2003 - 06:43:18 CST)
- VMD and Mandrake Linux 9.1 (Thu Nov 06 2003 - 02:59:04 CST)
Alexe Bojovschi
- Small molecules alignment with VMD (Sun Jun 04 2006 - 23:16:47 CDT)
Alexei Podtelezhnikov
- RE: dihedral angles cleaned up (Fri Aug 05 2005 - 17:47:13 CDT)
- dihedral angles cleaned up! (Thu Aug 04 2005 - 11:19:31 CDT)
- dihedral angles cleaned up (Thu Aug 04 2005 - 10:09:38 CDT)
Alexey Kozlenkov
- python disabled (Wed Jan 30 2002 - 14:53:54 CST)
- 3 simple questions from a newbie (Mon Jul 23 2001 - 07:01:43 CDT)
Alexis Salas
- problem with DPPC topology (Tue Mar 08 2005 - 14:29:43 CST)
- Activation energy (Thu Aug 19 2004 - 13:33:36 CDT)
- Solvating with TIP4 or SPC (Tue Aug 03 2004 - 16:01:03 CDT)
- TIP3 by TIP4 (Tue Aug 03 2004 - 13:57:40 CDT)
- How i can changue the charge of my protein (Mon Aug 02 2004 - 13:13:06 CDT)
Alfred Shaohui Zheng
- how to draw the bonds in VMD? (Sat Sep 06 2008 - 03:07:16 CDT)
Alfredo Quevedo
- Re: Question about the Main Menu window display (Wed Oct 15 2008 - 13:31:58 CDT)
- Question about the Main Menu window display (Fri Oct 10 2008 - 14:15:47 CDT)
Alfredo Valles
- Re: Python's future in VMD (Tue Sep 30 2003 - 08:01:05 CDT)
- python question 2 (Mon Aug 25 2003 - 04:02:10 CDT)
- python question (Sat Aug 23 2003 - 09:41:37 CDT)
- hi (Sat Aug 23 2003 - 06:15:08 CDT)
Ali Deyhim
- Re: free sample!!! (Wed May 09 2001 - 10:35:13 CDT)
Ali, Rejwan
- RE: Issues with Paratools and Gaussian (Wed Jan 12 2011 - 12:13:54 CST)
- FW: Issues with Paratools and Gaussian (Wed Jan 12 2011 - 11:57:16 CST)
- RE: Issues with Paratools and Gaussian (Wed Jan 12 2011 - 11:54:33 CST)
- Issues with Paratools and Gaussian (Tue Jan 11 2011 - 14:51:18 CST)
Alicia Hopkins
- measuring h-bonds (Sun Sep 19 2004 - 08:42:12 CDT)
- measuring h-bonds (Thu Sep 16 2004 - 09:24:33 CDT)
- measuring h-bond distances (Sat Sep 11 2004 - 12:01:58 CDT)
Alisha \
- cyclic peptides (Fri Jul 22 2011 - 13:09:55 CDT)
- Mutating a residue to a nonstandard amino acid (Tue Jul 19 2011 - 16:14:56 CDT)
Alison Grinthal
- list of residue contacts (Wed Sep 23 2009 - 15:02:23 CDT)
- Re: measure rmsf (Fri Jul 10 2009 - 13:10:14 CDT)
- measure rmsf (Fri Jul 10 2009 - 08:31:26 CDT)
- alignment (Fri Jun 19 2009 - 09:45:28 CDT)
- movie maker (Tue Jun 16 2009 - 09:44:48 CDT)
- helix axes (Tue Mar 31 2009 - 07:34:56 CDT)
- center of mass (Mon Jan 12 2009 - 13:51:43 CST)
- plotting on Mac (Fri Aug 10 2007 - 14:50:11 CDT)
- overlay (Tue May 29 2007 - 15:58:18 CDT)
- overlay (Mon May 28 2007 - 06:45:38 CDT)
Althea Lake
- You and a Rolex watch (Tue Apr 15 2008 - 17:12:00 CDT)
Amadeu
- Re: povray problem: degenerate cylinder (Fri May 05 2006 - 09:48:43 CDT)
- povray problem: degenerate cylinder (Fri May 05 2006 - 07:09:51 CDT)
Amarda Shehu
- Re: how to reset a timed out connection (Tue Apr 24 2007 - 13:55:24 CDT)
- how to reset a timed out connection (Tue Apr 24 2007 - 09:23:44 CDT)
- Re: Best fit plane axis (Fri Dec 08 2006 - 14:21:19 CST)
- special instructions in psfgen for circular proteins? (Thu Mar 30 2006 - 16:50:02 CST)
- understanding NOE restraints (Mon May 02 2005 - 18:56:34 CDT)
- criteria for detecting hydrogen bonds (Sun Apr 17 2005 - 18:14:21 CDT)
- handling electron density maps (.mrc and .map files) (Sat Dec 18 2004 - 15:29:30 CST)
- outputing xyz coordinates of selection (Sat Oct 23 2004 - 14:58:21 CDT)
- Re: superimposing frames (Wed Sep 22 2004 - 12:16:56 CDT)
- superimposing frames (Wed Sep 22 2004 - 10:51:57 CDT)
Amaury Pupo Meriño
- saltbr plugging problem: too many open files (Fri Dec 21 2007 - 09:31:07 CST)
amin_at_imtech.res.in
- Re: gromacs trajectory file (Thu May 03 2012 - 02:51:23 CDT)
- Re: Free software for building peptide (Wed May 02 2012 - 04:06:30 CDT)
- Re:Problem with generating psf using CGENFF (Fri Apr 27 2012 - 22:46:21 CDT)
- Re:Problem with generating psf using CGENFF (Fri Apr 27 2012 - 22:35:16 CDT)
- RE: Problem with generating psf using CGENFF (Thu Apr 26 2012 - 23:34:55 CDT)
- Re: Problem with generating psf using CGENFF (Thu Apr 26 2012 - 13:00:01 CDT)
- Re: Problem with generating psf using CGENFF (Thu Apr 26 2012 - 12:26:50 CDT)
- Re: Problem with generating psf using CGENFF (Thu Apr 26 2012 - 11:37:56 CDT)
- Problem with generating psf using CGENFF (Thu Apr 26 2012 - 04:42:40 CDT)
- segmentation fault with NAMDenergy (Thu Apr 19 2012 - 20:12:53 CDT)
- Simulations with alpha methylated amino acids (Wed Mar 14 2012 - 20:17:04 CDT)
Amir Hajiahmadi Farmahini
- RDF and Coordination Number (Fri May 28 2010 - 05:40:15 CDT)
- Re: Atom Selection for RDF (Sat May 22 2010 - 12:15:36 CDT)
- Atom Selection for RDF (Sat May 22 2010 - 09:19:18 CDT)
Amit
- Small molecules (Fri Oct 12 2007 - 18:02:51 CDT)
amit dong
- glycerol box (Thu Jun 28 2007 - 11:14:12 CDT)
- H-bonds (Tue Apr 24 2007 - 10:58:13 CDT)
- contact map (over all frames) (Fri Apr 13 2007 - 15:53:24 CDT)
- H-bond energy (Thu Jan 18 2007 - 18:13:11 CST)
Amit Paliwal
- dcd to coor files (Fri May 14 2004 - 15:18:26 CDT)
- Re: trouble loading dcd files (Sun May 09 2004 - 09:48:37 CDT)
- Re: RE: trouble loading dcd files (Sun May 09 2004 - 09:53:07 CDT)
- trouble loading dcd files (Sat May 08 2004 - 23:43:13 CDT)
amit_at_mbu.iisc.ernet.in
- Dynamic selection of residues on a trajectory (Tue Nov 07 2006 - 11:07:13 CST)
- Dynamic selection of residues on a trajectory (Tue Nov 07 2006 - 10:45:19 CST)
- Selection of residues in a trajectory (Tue Oct 31 2006 - 13:50:23 CST)
amodzelewska_at_dns.iimcb.gov.pl
- autoionize script (Sun May 16 2004 - 13:21:58 CDT)
amodzelewska_at_iimcb.gov.pl
- Re: error when solvating protein/vmd1.8.4a22 (Tue Nov 08 2005 - 08:44:30 CST)
Amor San Juan
- VMD: Ability to add terminal carbonyl oxygen (Sun Nov 07 2010 - 23:32:20 CST)
Amr Rizq
- RE: Problem in IMD with Compiled VMD (Wed Mar 04 2009 - 09:20:20 CST)
- RE: Problem in IMD with Compiled VMD (Wed Mar 04 2009 - 08:55:33 CST)
- Problem in IMD with Compiled VMD (Wed Mar 04 2009 - 06:00:58 CST)
- Equivalent Mouse Capabilities to Tracker CAVELib (Mon Feb 09 2009 - 07:06:26 CST)
Amrit Kalra
- Viewing Amber6 trajectory with VMD 1.8.1 (Mon Oct 20 2003 - 01:21:03 CDT)
Ana Celia Araujo Vila Verde
- RE: tcl variable withing variable name (Thu Apr 19 2007 - 10:29:43 CDT)
- RE: Calculate End-End distance for DCD (Tue Mar 13 2007 - 16:17:48 CDT)
- RE: Delete frames in a script (Tue Jan 30 2007 - 10:08:50 CST)
- RE: rotation to align (Fri Jan 19 2007 - 07:59:55 CST)
- script to load dcds from Replica Exchange simulations by Temperature (Mon Jan 15 2007 - 17:30:44 CST)
- RE: imposing period boundary conditions in a simulation with a crystal (Wed Sep 06 2006 - 08:31:59 CDT)
- imposing period boundary conditions in a simulation with a crystal (Tue Sep 05 2006 - 11:13:06 CDT)
- Re: problem with measure command (Fri Jun 23 2006 - 11:02:14 CDT)
- problem with measure command (Fri Jun 23 2006 - 10:22:49 CDT)
- the crystal structure of gold: questions about making the psf and about visualization in VMD; update (Tue May 23 2006 - 14:47:00 CDT)
- the crystal structure of gold: questions about making the psf and about visualization in VMD (Tue May 23 2006 - 11:36:54 CDT)
- RE: problem with script to get RMSD-solved (Tue Feb 21 2006 - 10:53:16 CST)
- RE: problem with script to get RMSD (Fri Feb 17 2006 - 14:10:10 CST)
- RE: problem with script to get RMSD (Fri Feb 17 2006 - 08:41:20 CST)
- RE: problem with script to get RMSD (Thu Feb 16 2006 - 15:49:23 CST)
- problem with script to get RMSD (Thu Feb 16 2006 - 13:31:28 CST)
- RE: printing to a file from a procedure to get RMSD (Thu Feb 02 2006 - 08:35:30 CST)
- printing to a file from a procedure to get RMSD (Tue Jan 31 2006 - 10:28:37 CST)
- psfgen error: MOLECULE DESTROYED BY FATAL ERROR (Tue Nov 22 2005 - 13:13:15 CST)
Ana Celia Vila Verde
- Re: diffusion coefficient plug-in in VMD (Tue May 08 2012 - 11:17:41 CDT)
- Re: counting specific atom types (Tue May 08 2012 - 09:31:23 CDT)
- Re: get avg ca distance (Fri Mar 09 2012 - 02:10:56 CST)
- Re: Using VMD to plot coordination number of solvated ion v/s time (Fri Mar 02 2012 - 10:15:23 CST)
- possible memory leak with pbc wrap (Fri Feb 24 2012 - 09:16:59 CST)
- package ::struct::set not available (Thu Jan 26 2012 - 08:36:56 CST)
- RE: a question about dcd files (Thu Feb 02 2006 - 08:32:35 CST)
- a question about dcd files (Wed Feb 01 2006 - 13:53:39 CST)
Ana Célia Vila Verde
- problem with density map obtained by volmap (Sun Sep 20 2009 - 08:01:12 CDT)
Ana Vila Verde
- Re: measure hbonds between protein and water - problem with periodic boundary conditions (Thu Apr 17 2008 - 05:54:50 CDT)
- measure hbonds between protein and water - problem with periodic boundary conditions (Thu Apr 17 2008 - 02:54:08 CDT)
Anand Kaushal
- python callback!!!! (Wed Jul 28 2004 - 16:19:15 CDT)
Ananyo Bandyopadhyay
- Creating a cuboid box to fit in atoms (Thu Sep 25 2008 - 13:29:15 CDT)
- Movie maker problem in VMD (Wed Sep 24 2008 - 11:11:14 CDT)
Anatoliy
- question about ionization (Wed Nov 07 2007 - 12:10:12 CST)
- question about water sphere script (Mon Nov 05 2007 - 11:21:54 CST)
andras.borosy_at_givaudan.com
- unique opportunity - 20% discount for the EuroQSAR 2006 (Tue Aug 15 2006 - 10:54:04 CDT)
- Periodic builder? (Tue Aug 08 2006 - 07:26:51 CDT)
Andre Farias de Moura
- Re: mpg image speed (Mon Apr 11 2005 - 09:40:46 CDT)
- drawing the edges of a non-rectangular box (Fri Mar 11 2005 - 06:17:46 CST)
- center of mass position (Tue Aug 24 2004 - 07:07:24 CDT)
Andrea Bernini
- H-bonds? (Wed Mar 05 1997 - 06:36:47 CST)
Andrea Carotti
- Bigdcd and Namdenergy batch problem (Wed Feb 24 2010 - 10:21:34 CST)
- Atom sorting according to resid (Wed Oct 21 2009 - 10:16:33 CDT)
- CatDCD Desmond Support (Wed Oct 07 2009 - 10:31:53 CDT)
- SAS values for a residue (Wed Jul 27 2005 - 07:58:45 CDT)
- Re: Script for automated selection (Wed Jun 22 2005 - 03:28:54 CDT)
- Script for automated selection (Mon Jun 20 2005 - 09:38:51 CDT)
Andrea Cristiani
- Fixed number of solvatation water (Wed Apr 25 2007 - 04:56:41 CDT)
Andrea Holfelder
- Re: Saving ionized.psf from add ions plug in of VMD (Wed Aug 31 2011 - 14:27:04 CDT)
- Saving ionized.psf from add ions plug in of VMD (Wed Aug 31 2011 - 10:35:45 CDT)
andrea spitaleri
- Re: silly rmsd script doesn' t work ... (Fri May 30 2008 - 08:28:40 CDT)
- silly rmsd script doesn' t work ... (Fri May 30 2008 - 07:17:16 CDT)
- Re: resolution screen in Linux (Mon Apr 28 2008 - 02:54:15 CDT)
- resolution screen in Linux (Thu Apr 24 2008 - 07:33:24 CDT)
- color by frame? (Mon May 07 2007 - 04:58:40 CDT)
- rmsf (Tue Sep 19 2006 - 10:40:15 CDT)
- select only border of the water box (Fri Aug 04 2006 - 04:41:00 CDT)
- Re: number of frames in pdb file? (Fri May 26 2006 - 03:01:41 CDT)
- rms and align strucs (Wed Apr 19 2006 - 06:05:50 CDT)
- contact map lig-pro (Wed Apr 19 2006 - 05:37:23 CDT)
- Re: dict command (Thu Apr 06 2006 - 02:43:21 CDT)
- dict command (Wed Apr 05 2006 - 09:44:50 CDT)
- find neighbour ligand-protein (Thu Mar 23 2006 - 08:53:40 CST)
- Re: VMD script (Tue Mar 14 2006 - 05:05:00 CST)
- Re: VMD script (Mon Mar 13 2006 - 04:19:55 CST)
- Re: tcl-reading files (Mon Feb 13 2006 - 08:42:49 CST)
- Re: vmd installation on the server (Tue Jan 31 2006 - 03:25:19 CST)
- vmd installation on the server (Mon Jan 30 2006 - 09:31:46 CST)
- contact map [Re: vmd-xplor and noe call ] (Thu Dec 15 2005 - 10:13:30 CST)
- vmd-xplor and noe call (Thu Dec 15 2005 - 05:16:58 CST)
- discriminate aromatic ring face (Mon Dec 05 2005 - 09:54:38 CST)
- Re: s-s bond in vmd not visualized (Mon Dec 05 2005 - 03:24:16 CST)
- Re: s-s bond in vmd not visualized (Tue Nov 29 2005 - 03:22:52 CST)
- Re: s-s bond in vmd not visualized (Wed Nov 23 2005 - 03:05:39 CST)
- s-s bond in vmd not visualized (Tue Nov 22 2005 - 07:03:52 CST)
- Re: calculate rmsd in a loop:feedback [sorry if you get it twice] (Fri Nov 18 2005 - 10:16:01 CST)
- Re: calculate rmsd in a loop:feedback [sorry if you get it twice] (Fri Nov 18 2005 - 05:31:21 CST)
- Re: calculate rmsd in a loop:feedback [sorry if you get it twice] (Fri Nov 18 2005 - 03:42:29 CST)
- Re: Réf. : calculate rmsd in a loop:feedback [sorry if you get it twice] (Thu Nov 17 2005 - 04:14:01 CST)
- calculate rmsd in a loop:feedback [sorry if you get it twice] (Thu Nov 17 2005 - 02:50:19 CST)
- increase size membrane (Fri Nov 04 2005 - 02:58:43 CST)
- Re: position of protein respect to membrane (Tue Sep 27 2005 - 04:00:31 CDT)
- Re: position of protein respect to membrane (Tue Sep 27 2005 - 03:41:35 CDT)
- position of protein respect to membrane (Mon Sep 26 2005 - 09:35:10 CDT)
Andrea.Cristiani_at_pharm.unige.ch
- Create a PSF (Fri Sep 21 2007 - 04:16:37 CDT)
Andreas Wagenmann
- Re: Frame creation (Fri Sep 25 2009 - 02:01:27 CDT)
- Frame creation (Thu Sep 24 2009 - 09:28:50 CDT)
Andrei A Golosov
- Re: electrostatic potential maps in vmd (Fri Mar 10 2006 - 12:17:50 CST)
- electrostatic potential maps in vmd (Fri Mar 10 2006 - 10:52:14 CST)
Andres Bynum
- Your Pharm4cy 0rder #3747312 (Sat Apr 21 2007 - 19:50:21 CDT)
Andres Morales
- Andres Morales sent you a little gift (Sun Apr 11 2010 - 20:33:52 CDT)
Andres Morales N
- FW: Disulfide bonds (Tue Oct 13 2009 - 01:02:30 CDT)
- Disulfude bonds (Tue Oct 13 2009 - 01:00:39 CDT)
- Average structure and NamdEnergy (Thu Sep 17 2009 - 00:03:36 CDT)
- Average structure and NamdEnergy (Wed Sep 16 2009 - 14:27:23 CDT)
- get coordinates (Sat Sep 12 2009 - 12:05:35 CDT)
- RE: namd-l: Re: rmsd matrix (Thu Sep 03 2009 - 15:00:30 CDT)
- rmsd matrix (Thu Sep 03 2009 - 07:45:06 CDT)
- NAMDEnergy Plugin (Tue Jul 28 2009 - 00:34:43 CDT)
- NAMDEnergy (Wed Jun 10 2009 - 08:59:51 CDT)
- NAMDEnergy (Sun Jun 07 2009 - 15:23:35 CDT)
- NAMDEnergy (Sun Jun 07 2009 - 15:24:33 CDT)
- Energy (Wed Jun 03 2009 - 21:50:41 CDT)
- Align mistake (Tue May 19 2009 - 11:14:21 CDT)
- RE: Average strcuture (Tue May 19 2009 - 10:21:28 CDT)
- Average strcuture (Tue May 19 2009 - 08:51:23 CDT)
- Translate (Wed May 13 2009 - 22:25:22 CDT)
- Axes (Wed May 13 2009 - 08:42:45 CDT)
- Alignment (Mon May 11 2009 - 21:44:55 CDT)
- Using clustering tool (Fri Apr 24 2009 - 22:56:48 CDT)
- iTrajComp plugin. (Fri Apr 24 2009 - 22:23:45 CDT)
- RE: Load multiple files (Thu Feb 12 2009 - 08:59:39 CST)
- rmsd matrix (Tue Feb 03 2009 - 10:01:28 CST)
- rmsd matrix (Mon Feb 02 2009 - 10:59:50 CST)
- get a PDB file from DCD file (Tue Jan 27 2009 - 07:58:23 CST)
- (no subject) (Mon Jan 26 2009 - 14:37:40 CST)
Andres Palencia
- Re: duration of video mpeg (Mon Dec 04 2006 - 06:12:51 CST)
- Re: duration of video mpeg (Sun Dec 03 2006 - 13:07:28 CST)
- duration of video mpeg (Sat Dec 02 2006 - 11:39:04 CST)
- VMD installation problem (Fri Nov 10 2006 - 10:38:41 CST)
Andrew
- Re: surface representation question (Thu Dec 09 2010 - 18:47:43 CST)
- Re: Graphics card for VMD, number of atoms, file format (Mon Nov 08 2010 - 14:29:07 CST)
- Re: VMD / Tachyon Questions (Tue Jul 06 2010 - 17:05:13 CDT)
- VMD / Tachyon Questions (Sun Jun 27 2010 - 19:27:21 CDT)
Andrew Dalke
- Re: translations with fixed and unfixed molecules (Thu Apr 15 1999 - 23:18:33 CDT)
- Re: moving molecules and getting the new positions (Tue Mar 30 1999 - 18:50:35 CST)
- Re: questions about MSMS and H-bonds (Fri Mar 05 1999 - 15:04:39 CST)
- Re: questions about MSMS and H-bonds (Fri Mar 05 1999 - 14:54:07 CST)
- Re: extracting distances (Thu Dec 10 1998 - 20:06:25 CST)
- convex hull and VMD (Mon Sep 28 1998 - 17:31:10 CDT)
- Re: Transparent graphics (Fri Sep 18 1998 - 12:32:30 CDT)
- Re: VMDTECH: CONECTing atoms (Mon Aug 24 1998 - 15:01:05 CDT)
- Re: calculation of RMS values (Wed Aug 19 1998 - 13:49:12 CDT)
- VMDTECH: CONECTing atoms (Fri Aug 14 1998 - 17:16:26 CDT)
- Re: The pdb format of vmd (Thu Jan 22 1998 - 12:02:32 CST)
- protein surface and volume code (Wed Jan 14 1998 - 22:17:10 CST)
- Re: VMD on a DEC? (Wed Jan 14 1998 - 22:07:30 CST)
- Re: problem with getting started. (Sun Dec 21 1997 - 11:47:00 CST)
- Re: unable to animate alanine.dcd (Mon Dec 08 1997 - 13:34:06 CST)
- Re: unable to animate alanine.dcd (Sun Dec 07 1997 - 23:16:55 CST)
- Re: tcl script for writinging modified pdb co-ordinates (Thu Dec 04 1997 - 18:41:03 CST)
- Re: drawing spheres (Wed Nov 19 1997 - 08:03:35 CST)
- Re: VMD only read 58 frames from XYZ file (Thu Nov 06 1997 - 04:24:54 CST)
- Re: MSMS in VMD (Wed Oct 15 1997 - 00:30:42 CDT)
- Re: VMD & PoV files (Wed Oct 08 1997 - 12:12:54 CDT)
- Re: reading minimalised pdb files (Tue Oct 07 1997 - 04:34:33 CDT)
- Exporting VMD images to Alias (Thu Jul 24 1997 - 14:28:40 CDT)
- residue-residue distances and atom selection bug (Tue Jun 10 1997 - 13:05:11 CDT)
- [VMDTECH] Schedule Change (Fri Apr 18 1997 - 18:07:35 CDT)
- [VMDTECH] Smoothing Animations (Sun Apr 13 1997 - 01:28:43 CDT)
- Re: Segmentation error! (Wed Apr 09 1997 - 10:46:36 CDT)
- [VMDTECH] Tracing Atom Picks (Fri Apr 04 1997 - 18:27:57 CST)
- [VMDTECH] Morphing (Fri Mar 28 1997 - 12:14:17 CST)
- Two (small) VMD 1.2b1 bugs (Wed Mar 26 1997 - 13:55:16 CST)
- Re: [VMDTECH] VMD 1.2b1 is now available (Tue Mar 25 1997 - 03:03:32 CST)
- [VMDTECH] VMD 1.2b1 is now available (Tue Mar 25 1997 - 02:09:57 CST)
- [VMDTECH] Drawing Methods, Part II (Fri Mar 14 1997 - 16:40:47 CST)
- Re: Wavefront obj output (Wed Mar 12 1997 - 15:19:48 CST)
- [VMDTECH] Drawing Methods, Part I (Fri Mar 07 1997 - 16:22:57 CST)
- VMD now uses Tcl 7.6 (Wed Mar 05 1997 - 22:47:42 CST)
- Re: why does VMD quit automatically? (Wed Mar 05 1997 - 11:50:27 CST)
- Re: H-bonds? (Wed Mar 05 1997 - 09:37:55 CST)
- Re: why does VMD quit automatically? (Wed Mar 05 1997 - 08:58:34 CST)
- [VMDTECH] Secondary Structure (Fri Feb 28 1997 - 16:38:21 CST)
- [VMDTECH] Small things (Fri Feb 21 1997 - 13:02:34 CST)
- VMD workshop material (Tue Feb 18 1997 - 17:43:13 CST)
- [VMDTECH] Making Movies (Fri Feb 14 1997 - 12:56:27 CST)
- [VMDTECH] RMSD and best-fit alignments (Fri Feb 07 1997 - 14:37:24 CST)
- [Tech] Customizing VMD: hot keys and popup menus (Fri Jan 31 1997 - 12:10:02 CST)
- Re: textures in VMD and rayshade scripts (Mon Jan 27 1997 - 15:42:15 CST)
- Re: [Tech] Colors in VMD (Fri Jan 24 1997 - 15:24:38 CST)
- [Tech] Colors in VMD (Fri Jan 24 1997 - 11:44:45 CST)
- Special Christmas binary (Fri Dec 20 1996 - 04:01:38 CST)
- Welcome to VMD-L! (Thu Dec 19 1996 - 11:40:38 CST)
- Re: Counting number of water molecules (Wed Dec 09 2009 - 17:20:43 CST)
- Re: Save State Fails (Thu Jul 23 2009 - 13:11:46 CDT)
- Re: ResdueType and hydrophobicity scale (Wed Jul 16 2008 - 05:45:13 CDT)
- Re: What's the main reason of the structure or function of a protein? (Thu Mar 06 2008 - 00:25:03 CST)
- Re: What's the main reason of the structure or function of a protein? (Wed Mar 05 2008 - 16:32:42 CST)
- Re: VMD languaje information (Tue Mar 04 2008 - 14:44:16 CST)
- Re: VMD and Cyclotides... (Tue Apr 05 2005 - 02:59:29 CDT)
- Re: displaying double, triple bonds (Tue Mar 29 2005 - 17:05:33 CST)
- Re: atom index starting at 0 (Fri Jan 07 2005 - 17:36:50 CST)
- Re: Tube representation of alpha carbons (Wed Dec 08 2004 - 01:53:05 CST)
- Re: Tube representation of alpha carbons (Tue Dec 07 2004 - 19:46:58 CST)
- Re: Elliptic molecules (Thu Jul 15 2004 - 15:35:47 CDT)
- Re: Van der Waal's radii of atoms (Wed Jun 02 2004 - 23:21:30 CDT)
- Re: attempting to source a script (Thu Feb 12 2004 - 08:41:46 CST)
- Re: "nucleic" selection (Wed Nov 12 2003 - 13:29:15 CST)
- Re: Python's future in VMD (Tue Sep 30 2003 - 12:19:46 CDT)
- Re: question about selection (Thu Sep 04 2003 - 18:57:00 CDT)
- Re: simple question (Tue Sep 02 2003 - 19:40:49 CDT)
- Re: Some improvements for 1.8.2 (Fri Jul 25 2003 - 20:18:57 CDT)
- Re: selection (Fri Jul 25 2003 - 18:22:25 CDT)
- Re: conect2psf (Wed Jul 24 2002 - 04:51:04 CDT)
- conect2psf (Tue Jul 23 2002 - 23:35:06 CDT)
- Re: Regular Expression problem with $ (Tue Apr 30 2002 - 20:38:10 CDT)
- Re: Which drawing method is used in the picture? (Tue Apr 09 2002 - 15:04:19 CDT)
- Re: boolean operators in graphics (Thu Mar 14 2002 - 22:32:38 CST)
- Re: Superimposing two frames (Tue Oct 30 2001 - 16:12:03 CST)
- Re: rasmol script (Tue Mar 20 2001 - 22:45:49 CST)
- Re: Spheres with OpenGL (was Re: linux graphics adapters?) (Sun Jul 16 2000 - 20:54:55 CDT)
- Re: VMD and GRASP Qu.II (Thu Jun 15 2000 - 04:23:39 CDT)
Andrew DeYoung
- Making only a subset of atoms transparent (or otherwise non-emphasized) (Tue May 15 2012 - 12:49:22 CDT)
- RE: Units of Isovalue Slider in Isovalue Drawing Method (Wed Apr 18 2012 - 20:52:13 CDT)
- Units of Isovalue Slider in Isovalue Drawing Method (Wed Apr 18 2012 - 20:08:53 CDT)
- Is it possible to save the position and angle of the camera for future VMD sessions? (Fri Apr 13 2012 - 13:07:20 CDT)
- Drawing a high resolution transparent or translucent sphere (Wed Apr 11 2012 - 20:37:20 CDT)
- RE: Dynamically displaying the length of hydrogen bonds (Fri Mar 30 2012 - 11:54:56 CDT)
- Dynamically displaying the length of hydrogen bonds (Fri Mar 30 2012 - 10:30:08 CDT)
- Drawing the simulation box from a Gromacs trajectory (Mon Mar 12 2012 - 12:43:23 CDT)
Andrew Fenley
- Re: Mac OS X 64 bit Issues (Tue Nov 15 2011 - 17:47:41 CST)
- Mac OS X 64 bit Issues (Tue Nov 15 2011 - 15:00:56 CST)
- Re: color with name (Fri Sep 16 2011 - 16:11:17 CDT)
Andrew Gormanly
- RPM spec file (Tue Oct 17 2006 - 08:03:45 CDT)
Andrew Hall
- GRASP files (Wed Jun 14 2000 - 10:17:27 CDT)
- Remote control of VMD on SGI-NT mixture (Wed Apr 26 2000 - 11:11:50 CDT)
- MSMS help (Mon Apr 03 2000 - 15:04:30 CDT)
Andrew Huang
- Bond lengths from PDB and PSF (Mon May 12 2008 - 16:36:18 CDT)
Andrew James Bennett
- VMD not loading in Suse 11.1 (Fri Jan 23 2009 - 05:43:05 CST)
Andrew Jewett
- Re: Individual components of RMSD? (Tue Mar 06 2012 - 20:31:31 CST)
- Re: how to place a membrane protein with OPM ? (Wed Feb 29 2012 - 19:24:10 CST)
- Re: Feedback wanted from Linux VMD users with ATI/AMD graphics chipsets (Thu Nov 03 2011 - 15:56:37 CDT)
- Re: Feedback wanted from Linux VMD users with ATI/AMD graphics chipsets (Thu Nov 03 2011 - 16:07:46 CDT)
- Re: Compiling vmd 1.9 plugins (Wed Oct 26 2011 - 16:44:48 CDT)
- Re: a guide for installing vmd-1.8.7 on ubuntu10.10 (LINUXAMD64) (Mon Jan 10 2011 - 22:27:39 CST)
- a guide for installing vmd-1.8.7 on ubuntu10.10 (LINUXAMD64) (Mon Jan 10 2011 - 19:56:23 CST)
- Re: menus unresponsive in ubuntu 10.10 (Sun Oct 31 2010 - 18:55:33 CDT)
- Re: menus unresponsive in ubuntu 10.10 (Sat Oct 30 2010 - 02:22:06 CDT)
- menus unresponsive in ubuntu 10.10 (Thu Oct 28 2010 - 02:42:15 CDT)
- request ability to append in CatDCD (and NAMD) (Fri Aug 08 2008 - 14:15:46 CDT)
Andrew M. Simms
- RE: mol urlload -- this doesn't seem to work in Windows (it does seem to work from Linux) (Fri Apr 16 2010 - 18:18:16 CDT)
- RE: mol urlload -- this doesn't seem to work in Windows (it does seem to work from Linux) (Fri Apr 16 2010 - 17:48:11 CDT)
- mol urlload -- this doesn't seem to work in Windows (it does seem to work from Linux) (Fri Apr 16 2010 - 11:30:09 CDT)
andrew ritchie
- aligning multiple trajectories to a single .pdb file (Wed May 18 2011 - 13:30:54 CDT)
Andrew Watts
- (no subject) (Fri Apr 23 2004 - 15:26:37 CDT)
Andrés Morales
- Loop for (Thu May 10 2012 - 18:40:58 CDT)
- Re: Thickness of bilayer script (Thu Apr 19 2012 - 20:58:35 CDT)
- Re: Average angle between the lipid dipole vector and the bilayer normal. (Wed Apr 11 2012 - 16:43:01 CDT)
- Problems with for loop (Tue Apr 10 2012 - 11:43:10 CDT)
- Average angle between the lipid dipole vector and the bilayer normal. (Mon Apr 09 2012 - 12:55:17 CDT)
- Average angle between the lipid dipole vector and the bilayer normal. (Mon Apr 09 2012 - 12:45:44 CDT)
- Re: Change coordinates (Thu Nov 24 2011 - 10:38:15 CST)
- Change coordinates (Thu Nov 24 2011 - 02:14:02 CST)
- lipid bilayer thickness (Sun Nov 06 2011 - 00:07:36 CDT)
- Calculating parameters in lipid bilayers (Thu Oct 20 2011 - 22:04:03 CDT)
- area per lipid (Thu Oct 20 2011 - 01:12:14 CDT)
aneamtu_at_iasi.mednet.ro
- E-D stereo glasses (Sat Mar 03 2007 - 04:44:51 CST)
aneesh cna
- Script for counting water molecules (Mon Nov 08 2010 - 07:06:33 CST)
- Check out my photos on Facebook (Tue Sep 28 2010 - 04:27:52 CDT)
- Re: Regarding coordinates transformation (Thu Feb 25 2010 - 23:51:15 CST)
- Regarding coordinates transformation (Wed Feb 24 2010 - 01:04:27 CST)
- Space distribution functions (Wed Dec 24 2008 - 23:08:03 CST)
- atom selection (Wed Dec 03 2008 - 05:32:57 CST)
- algorithm for finding center of mass of the side chains in the protein (Fri Aug 29 2008 - 07:26:26 CDT)
- Re: Percentage Helicity calculation in VMD (Fri Feb 01 2008 - 03:18:53 CST)
- Percentage Helicity calculation in VMD (Thu Jan 31 2008 - 22:54:53 CST)
- problem with timeline plugin (Fri Jan 25 2008 - 00:12:17 CST)
- problem with superimposing two proteins (Thu Jan 10 2008 - 05:33:21 CST)
- Re: Hydrophobicity plots in VMD (Mon Nov 26 2007 - 23:31:43 CST)
- Re: Hydrophobicity plots in VMD (Mon Nov 26 2007 - 04:09:44 CST)
- Re: Hydrophobicity plots in VMD (Sat Nov 24 2007 - 22:50:51 CST)
- Hydrophobicity plots in VMD (Sat Nov 24 2007 - 00:33:38 CST)
- problem with loading trajectories in timline plugin (Thu Nov 22 2007 - 00:24:00 CST)
- stride binaries for windows XP OS (Mon Nov 12 2007 - 23:21:34 CST)
- problem with colouring the surface with electroststic potential (Mon Nov 12 2007 - 23:15:25 CST)
- problem with timeline plugin (Mon Sep 17 2007 - 05:33:29 CDT)
- problem regarding timeline (Mon Sep 10 2007 - 10:54:01 CDT)
- problem regarding stride (Mon Aug 13 2007 - 05:31:32 CDT)
- problem regarding stride (Mon Aug 13 2007 - 00:58:09 CDT)
angel
- Load (Thu Aug 17 2006 - 13:14:06 CDT)
- Compiling problem (Mon Jun 19 2006 - 14:23:04 CDT)
- Compilation propblem (Mon Jun 19 2006 - 12:26:52 CDT)
- Compilation (Wed May 24 2006 - 17:44:39 CDT)
- Plugin compilation problem (Thu May 18 2006 - 17:41:16 CDT)
- Plugin compilation (Fri May 12 2006 - 16:19:47 CDT)
- Compiling problem (Wed Apr 26 2006 - 14:59:31 CDT)
- Compiling problem (Fri Mar 31 2006 - 15:57:47 CST)
- Some errors (Mon Mar 27 2006 - 18:51:51 CST)
angel_at_cbuc.cl
- haptics device "novint falcon" (Mon Dec 15 2008 - 09:13:31 CST)
- paratool dont recognize gaussian output (Fri Dec 12 2008 - 10:10:13 CST)
Angelo R. Rossi
- Re: Problem with Starting vmd after Debian System Upgrade (Wed Jun 08 2011 - 07:27:05 CDT)
- Re:vmd, linux & dri (Tue Feb 13 2001 - 08:20:42 CST)
Angelo Rossi
- Problem with Starting vmd after Debian System Upgrade (Tue Jun 07 2011 - 11:26:06 CDT)
- Re: Need Guidance with pbctools (Sun Jul 12 2009 - 08:02:21 CDT)
- Need Guidance with pbctools (Sat Jul 11 2009 - 13:47:11 CDT)
angelo vargas
- vmd customization (Thu Oct 28 2004 - 03:57:25 CDT)
Anil Kumar
- VMD movie from XYZ coordinate if file has two type of atoms (Sun Dec 09 2007 - 22:12:58 CST)
- Re: VMD movie from XYZ coordinate if file has two type of atoms] (Wed Dec 12 2007 - 01:48:06 CST)
- Re: VMD movie from XYZ coordinate if file has two type of atoms] (Tue Dec 11 2007 - 21:00:58 CST)
- VMD movie from XYZ coordinate if file has two type of atoms] (Tue Dec 11 2007 - 04:20:07 CST)
- VMD movie from XYZ coordinate if file has two type of atoms (Mon Dec 10 2007 - 22:43:49 CST)
Anirban Ghosh
- How to generate an index (.ind) file? (Fri Dec 05 2008 - 00:07:49 CST)
- Re: use configure.options (Mon Nov 17 2008 - 22:34:14 CST)
- Re: Re: (Tue Nov 11 2008 - 22:27:15 CST)
- Re: Re: (Tue Nov 11 2008 - 21:59:01 CST)
- (no subject) (Tue Nov 11 2008 - 07:17:04 CST)
- CG Map Tool Syntax Error (Wed Nov 05 2008 - 04:48:32 CST)
- Re: PSFGEN problem with URA residues (Mon Oct 20 2008 - 08:30:49 CDT)
- Re: Catdcd? (Mon Oct 20 2008 - 06:31:25 CDT)
- PSFGEN problem with URA residues (Mon Oct 20 2008 - 06:27:06 CDT)
- Re: Problems after installation (ubuntu 8.04) (Sat Oct 04 2008 - 13:04:09 CDT)
- Restarting a simulation $ Langevin (Fri Sep 19 2008 - 07:17:12 CDT)
- How to ionize a Shape Based CG Model? (Mon Sep 15 2008 - 08:09:07 CDT)
Anna
- Mailing list problems (Wed Aug 24 2011 - 14:53:46 CDT)
- Re: Mailing list problems (Wed Aug 24 2011 - 15:12:02 CDT)
- Fwd: Initial configuration reorientation (Wed Aug 24 2011 - 12:34:11 CDT)
- Initial configuration reorientation (Wed Aug 24 2011 - 11:48:38 CDT)
- Re: DNA hairpin (Sat Aug 20 2011 - 04:30:52 CDT)
- Re: Vmd molecule rotation and translation (Tue Aug 09 2011 - 01:27:37 CDT)
- Fwd: Vmd molecule rotation and translation (Mon Aug 08 2011 - 19:45:53 CDT)
- Vmd molecule rotation and translation (Mon Aug 08 2011 - 18:41:49 CDT)
- Re: [lammps-users] Initial configurations / topology for LAMMPS (Thu Jul 14 2011 - 17:17:56 CDT)
Anna Aagaard
- Which drawing method is used in the picture? (Tue Apr 09 2002 - 14:40:17 CDT)
Anna Amat
- surface of an atomic property (Wed May 25 2011 - 11:44:38 CDT)
- surface from a generic atomic property (Wed May 25 2011 - 11:15:11 CDT)
Anna Ceguerra
- Re: LAMMPS trajectory file (Tue May 11 2010 - 03:32:52 CDT)
- LAMMPS trajectory file (Mon May 10 2010 - 21:12:28 CDT)
Anna Karawajczyk
- new coordinates (Thu Oct 06 2005 - 02:57:55 CDT)
- new coordinates (Thu Oct 06 2005 - 02:35:09 CDT)
- small figures (Fri Aug 19 2005 - 07:47:30 CDT)
Anna Kuznetsova
- script to modify cysteines with spinlabel (Mon Jan 23 2012 - 14:55:50 CST)
- How can I operate on multiple .pdb structures in a list (Wed Mar 23 2011 - 18:49:02 CDT)
Anna Modzelewska
- Re: tcl-reading files (Mon Feb 13 2006 - 08:52:19 CST)
- tcl-reading files (Mon Feb 13 2006 - 07:35:26 CST)
- Re: secondary structure's display - problem (Thu Jan 12 2006 - 10:21:07 CST)
- Re: secondary structure's display - problem (Thu Jan 12 2006 - 06:23:56 CST)
- Re: secondary structure's display - problem (Wed Jan 11 2006 - 09:03:28 CST)
- secondary structure's display - problem (Tue Jan 10 2006 - 10:29:43 CST)
- error when solvating protein/vmd1.8.4a22 (Mon Nov 07 2005 - 07:31:59 CST)
- saving macros (Wed Nov 02 2005 - 05:35:09 CST)
- Re: autoimd on windows (Wed Jun 22 2005 - 11:51:22 CDT)
- Re: autoimd on windows (Wed Jun 22 2005 - 05:29:52 CDT)
- autoimd on windows (Mon Jun 20 2005 - 06:40:29 CDT)
- autoimd error (Wed Jun 15 2005 - 09:35:01 CDT)
- Re: problem in autoionize (Thu Sep 30 2004 - 04:18:38 CDT)
- stereo with GForce video board (Thu Jul 29 2004 - 04:20:31 CDT)
- periodic box lines (Mon Dec 01 2003 - 06:50:05 CST)
Anna Whitney
- Long atom types from CGenFF causing charge problems (Tue Aug 09 2011 - 16:01:09 CDT)
Annabelle Posey
- You can save 80% (Thu Apr 17 2008 - 17:58:17 CDT)
annalisa_at_biotec.tu-dresden.de
- combine.tcl (Tue Nov 21 2006 - 15:06:50 CST)
Anneta Tzampazi
- Problem with creating psf file from structure made by inorganic builder (Fri Oct 03 2008 - 04:43:19 CDT)
- Concerning protein rotation (Mon Sep 08 2008 - 05:22:40 CDT)
- Inquiry concerning the plugin "Inorganic builder" (Mon Jun 23 2008 - 05:23:46 CDT)
anshudx_at_indiatimes.com
- Info regarding residue based CG simulation (Thu May 15 2008 - 13:04:11 CDT)
Anshul Shah
- Re: Amber prmtop/inpcrd files (Mon Jul 28 2003 - 17:17:29 CDT)
- Amber prmtop/inpcrd files (Mon Jul 28 2003 - 15:45:05 CDT)
Anssi Nurminen
- RMSD heatmapper -plugin (Mon Sep 19 2011 - 12:03:51 CDT)
- Re: Tcl plugin development and debugging (Tue Apr 12 2011 - 12:11:47 CDT)
- Re: Tcl plugin development and debugging (Tue Apr 12 2011 - 11:55:16 CDT)
- Re: Tcl plugin development and debugging (Tue Apr 12 2011 - 11:21:56 CDT)
- Re: Tcl plugin development and debugging (Tue Apr 12 2011 - 10:49:32 CDT)
- Re: Tcl plugin development and debugging (Tue Apr 12 2011 - 09:33:01 CDT)
- Tcl plugin development and debugging (Tue Apr 12 2011 - 06:14:36 CDT)
Anthony Cruz
- Re: Analysis (Thu Mar 23 2006 - 14:01:45 CST)
- Big trr trajectory (Thu Mar 23 2006 - 13:27:17 CST)
- Re: Analysis (Thu Mar 23 2006 - 10:20:13 CST)
- Re: Analysis (Mon Mar 20 2006 - 12:33:53 CST)
- Analysis (Wed Mar 08 2006 - 13:37:21 CST)
- Re: selection of atoms on INSIDE protein (Mon Mar 06 2006 - 11:26:12 CST)
- Re: selection of atoms on INSIDE protein (Mon Mar 06 2006 - 10:20:08 CST)
- representation using COM (Fri Feb 24 2006 - 16:53:27 CST)
- RMSD or RMSF value (Tue Dec 20 2005 - 13:17:32 CST)
- Re: APBS plugin (Thu Dec 08 2005 - 14:07:37 CST)
- APBS plugin (Wed Dec 07 2005 - 14:06:06 CST)
- Protein volume and cavityes (Wed Dec 07 2005 - 13:01:53 CST)
- macros and variables (Thu Dec 01 2005 - 15:09:07 CST)
Anthony Cruz Balberdi
- Plugins use after compilation question (Mon Feb 27 2012 - 12:38:01 CST)
Anthony Ivetac
- Re: Labelling Coordinates (not Atoms) (Wed Jun 18 2008 - 21:32:03 CDT)
- Labelling Coordinates (not Atoms) (Wed Jun 18 2008 - 17:52:09 CDT)
- Re: Rendering Labels with Tachyon (Thu Apr 24 2008 - 17:43:08 CDT)
- Re: Rendering Labels with Tachyon (Thu Apr 24 2008 - 11:58:52 CDT)
- Rendering Labels with Tachyon (Wed Apr 23 2008 - 18:18:33 CDT)
- PPMTOMPEG Quality (Thu Apr 17 2008 - 14:40:15 CDT)
- Drawing Vectors (Tue Nov 16 2004 - 08:53:35 CST)
- Tachyon Internal Rendering (Mon Jul 26 2004 - 08:34:05 CDT)
- Visualising Helix Dipole Moment (Mon Jul 19 2004 - 05:25:54 CDT)
- Non-protein Multiple-Frame File (Mon May 24 2004 - 06:44:54 CDT)
Anthony Rey
- Re: to use tcl script in command line (Thu Dec 08 2011 - 07:38:04 CST)
- Analyzing a 10ns simulation on Mac aborts (Tue Dec 06 2011 - 23:25:17 CST)
- Re: Run a variable through VMD Tk/Tcl console .vmdrc file (Mon Oct 31 2011 - 02:09:42 CDT)
- Run a variable through VMD Tk/Tcl console .vmdrc file (Sun Oct 30 2011 - 06:55:06 CDT)
- Run a variable through VMD Tk/Tcl console /// .vmdrc file (Sun Oct 30 2011 - 06:14:22 CDT)
- Re: Quick TCl scripting question (Thu Sep 22 2011 - 00:02:54 CDT)
- Quick TCl scripting question (Wed Sep 21 2011 - 22:49:02 CDT)
Anthony Samiotakis
- Ramachandran plot tcl script (Sat Feb 23 2008 - 15:54:50 CST)
Anton Arkhipov
- Re: sbcg with multimers (Sun Jan 17 2010 - 23:37:48 CST)
- Re: Restraints on coarse grained model (Wed Dec 09 2009 - 10:58:56 CST)
- Re: CG lipid bilayer vmd 1.8.7 (Mon Dec 07 2009 - 10:15:53 CST)
- Re: CG lipid bilayer vmd 1.8.7 (Sun Dec 06 2009 - 00:35:46 CST)
- Re: problems with CG protein-lipidbilayer-water system (Mon Nov 23 2009 - 00:51:43 CST)
- Re: CG bead definition (Mon Aug 31 2009 - 23:24:05 CDT)
- Re: residue based CG model (Fri Jul 10 2009 - 10:47:00 CDT)
- Re: Satellite tobacco mosaic virus images making by VMD (Tue May 05 2009 - 12:48:10 CDT)
- Re: Can the CG model built from VMD be used as an Input of NAMD,GROMACS and any other MD program? (Tue Apr 28 2009 - 10:34:04 CDT)
- Re: selection syntax (Mon Mar 30 2009 - 09:03:47 CDT)
- Re: how to make a mivie by VMD (Wed Mar 25 2009 - 18:00:10 CDT)
- Re: SBCG membrane (Wed Dec 24 2008 - 15:01:38 CST)
- Re: CG bead definition (Mon Nov 24 2008 - 18:36:23 CST)
- Re: CG bead definition (Mon Nov 24 2008 - 16:43:28 CST)
- Re: CG Map Tool Syntax Error (Wed Nov 05 2008 - 16:16:59 CST)
- Re: Extract parameters of Shape-based Coarse Graining model from AA simulation (Wed Oct 22 2008 - 10:28:02 CDT)
- Re: volmap (Tue Oct 21 2008 - 10:43:40 CDT)
- Re: How to render an image like this one with VMD? (Thu Sep 25 2008 - 11:29:20 CDT)
- Re: viewing an embryo (Tue Sep 23 2008 - 15:03:01 CDT)
- Re: viewing an embryo (Tue Sep 23 2008 - 14:37:15 CDT)
- Re: How to ionize a Shape Based CG Model? (Mon Sep 15 2008 - 10:15:23 CDT)
- Re: How to ionize a Shape Based CG Model? (Mon Sep 15 2008 - 09:10:04 CDT)
Anton B. Guliaev
- Potential map display in VMD (GRASP) (Wed Sep 28 2005 - 18:33:59 CDT)
Antonija Tomiæ
- per-residue alignment (Wed Dec 01 2010 - 02:24:33 CST)
Anuradha Mittal
- Re: RMSD (Wed Apr 12 2006 - 09:24:45 CDT)
- RMSD (Tue Apr 11 2006 - 13:47:06 CDT)
- solvation (Wed Mar 22 2006 - 17:38:38 CST)
- contact map (Wed Jun 01 2005 - 14:56:06 CDT)
- hbond (Mon Apr 11 2005 - 12:24:05 CDT)
- rmsd (Tue Apr 05 2005 - 11:24:28 CDT)
ANURAG JHA
- connectivity in RBCG file(pdb extension) (Tue Sep 27 2011 - 18:46:20 CDT)
Anurag Sethi
- Re: Maximum length of an extended peptide? (Tue Nov 15 2011 - 21:57:44 CST)
- Re: Clustering MD trajectories (Fri Sep 16 2011 - 17:04:29 CDT)
- Re: Multiseq in text mode (Tue Feb 08 2011 - 12:11:29 CST)
- Re: Finding residues with some distance (Wed Mar 03 2010 - 18:25:11 CST)
Anwaar Al-Zireeni
- Adding Single Residues to a Protein (Thu Jul 15 2010 - 18:34:56 CDT)
apeyser_at_newssun.med.miami.edu
- Re: User colors and povray (Wed Feb 23 2005 - 15:45:26 CST)
- User colors and povray (Tue Feb 22 2005 - 13:34:47 CST)
- vmd on ppc (G4) (Mon Feb 23 2004 - 14:07:25 CST)
- Compiling vmd for ppc linux (Fri Feb 20 2004 - 13:46:50 CST)
- Compiling vmd for ppc linux (Fri Feb 20 2004 - 13:55:41 CST)
arash azari
- pbwithin selection (Thu Nov 10 2011 - 07:58:28 CST)
- catdcd and velocity dcd file (Fri Jul 01 2011 - 10:06:11 CDT)
Ardy Davari
- Re: color charmm dcd by kinetic energy (Tue Jul 06 2010 - 09:30:27 CDT)
- color charmm dcd by kinetic energy (Mon Jul 05 2010 - 15:59:22 CDT)
- Color by velocity (speed?) (Wed Jun 16 2010 - 12:04:04 CDT)
Arent, Michael
- Some newbie questions (Fri Apr 20 2001 - 08:44:27 CDT)
Arham Amouie
- camera position and scale (Mon Jan 09 2012 - 08:09:46 CST)
Arian Arian
- Input File Format (Wed Oct 21 2009 - 14:03:01 CDT)
Aric Newton
- Do H-bonds cross periodic boundaries? Re: Hbonds Analysis. (Thu Feb 16 2012 - 10:27:38 CST)
- Re: Hbonds Analysis (Wed Feb 15 2012 - 18:11:58 CST)
- Hbonds Analysis (Tue Feb 14 2012 - 14:22:27 CST)
- Re: Reading MatStudio/ LAMMPS structures to VMD (Fri Oct 29 2010 - 09:16:30 CDT)
- Reading MatStudio/ LAMMPS structures to VMD (Sat Oct 23 2010 - 18:45:06 CDT)
Arieana Moore
- problems with Autoimd on mac os x ( panther ) (Thu Apr 29 2004 - 19:02:09 CDT)
Ariel Mitchell
- The affordable watch alternative (Fri May 02 2008 - 20:35:12 CDT)
Arienti, Marco UTRC
- more on lammps and VMD coordinates (Tue Feb 26 2008 - 11:18:37 CST)
Arindam Ganguly
- Replica exchange molecular dynamics (REMD) (Tue Mar 20 2007 - 21:22:15 CDT)
- Re: making movie from GROMACS trajectory (Thu Aug 17 2006 - 15:43:43 CDT)
- making movie from GROMACS trajectory (Wed Aug 09 2006 - 18:05:36 CDT)
Armen Nalian
- Re: custom db in Multiseq (Fri May 18 2007 - 12:29:41 CDT)
- custom db in Multiseq (Thu May 17 2007 - 18:48:01 CDT)
- RE: trouble with autopsf (Mon Oct 24 2005 - 16:56:41 CDT)
- RE: trouble with autopsf (Sun Oct 23 2005 - 23:36:09 CDT)
- APBS error (Wed Feb 16 2005 - 18:58:54 CST)
Arnab Chakrabarty
- Re: Unable to see VDW , CPK representations (Sat Feb 16 2008 - 17:51:04 CST)
- Unable to see VDW , CPK representations (Fri Feb 15 2008 - 16:25:23 CST)
Arnab Mukherjee
- Re: vmd crashes on startup (Fri Jul 06 2007 - 15:24:42 CDT)
- vmd crashes on startup (Wed Jul 04 2007 - 16:11:36 CDT)
Arneh Babakhani
- Re: Calculating the Tilt Angle of a non-helical peptide (Wed Mar 19 2008 - 21:37:45 CDT)
- Calculating the Tilt Angle of a non-helical peptide (Wed Mar 19 2008 - 20:24:38 CDT)
- Re: Render Snapshot from the Tcl console (jpg gif format) (Sun Dec 02 2007 - 23:24:35 CST)
- Re: Render Snapshot from the Tcl console (jpg gif format) (Sun Dec 02 2007 - 20:57:41 CST)
- Re: Render Snapshot from the Tcl console (jpg gif format) (Sun Dec 02 2007 - 20:45:38 CST)
- Re: Render Snapshot from the Tcl console (jpg gif format) (Sun Dec 02 2007 - 18:31:17 CST)
- Render Snapshot from the Tcl console (jpg gif format) (Sun Dec 02 2007 - 15:02:52 CST)
- Re: peptide builder (Fri Sep 07 2007 - 10:50:23 CDT)
- Re: Changing the Index values of a molecule (the differenece between gro and pdb files) (Wed Aug 15 2007 - 13:06:17 CDT)
- Changing the Index values of a molecule (the differenece between gro and pdb files) (Wed Aug 15 2007 - 12:39:08 CDT)
- Running a vmd tcl script in the background (Mon Aug 13 2007 - 19:05:20 CDT)
- Re: Deleting bonds based on length (Fri Jul 27 2007 - 07:58:41 CDT)
- Deleting bonds based on length (Thu Jul 26 2007 - 23:41:11 CDT)
- Recognized atom types by VMD PDB reader (Fri Jul 20 2007 - 12:52:48 CDT)
- Re: Reading a pdbqt file (generated from AutoDock) (Fri Jul 20 2007 - 12:35:24 CDT)
- Re: Reading a pdbqt file (generated from AutoDock) (Fri Jul 20 2007 - 09:19:00 CDT)
- Reading a pdbqt file (generated from AutoDock) (Thu Jul 19 2007 - 18:01:01 CDT)
- Re: Making a selection from another selection (Tue Jul 17 2007 - 20:41:29 CDT)
- Re: Making a selection from another selection (Tue Jul 17 2007 - 20:35:19 CDT)
- Making a selection from another selection (Tue Jul 17 2007 - 20:02:49 CDT)
- Re: Divide by Zero Error , but can't find the zero! (Thu Jul 05 2007 - 20:03:45 CDT)
- Divide by Zero Error , but can't find the zero! (Thu Jul 05 2007 - 14:57:03 CDT)
- Re: Using VMD just to plot some coordinates from a mathematical/geometrical model (Sat Jun 23 2007 - 10:29:11 CDT)
- Re: Using VMD just to plot some coordinates from a mathematical/geometrical model (Fri Jun 22 2007 - 20:04:40 CDT)
- Using VMD just to plot some coordinates from a mathematical/geometrical model (Fri Jun 22 2007 - 17:51:35 CDT)
- Re: Loading up PDB files in absolute coordinates (Fri Jun 22 2007 - 15:04:24 CDT)
- Re: Loading up PDB files in absolute coordinates (Fri Jun 22 2007 - 14:38:42 CDT)
- Re: Loading up PDB files in absolute coordinates (Fri Jun 22 2007 - 14:26:12 CDT)
- Re: Loading up PDB files in absolute coordinates (Fri Jun 22 2007 - 13:50:59 CDT)
- Loading up PDB files in absolute coordinates (Fri Jun 22 2007 - 13:10:06 CDT)
- Re: Measuring hbonds between selections from different molecules (Tue Jun 05 2007 - 20:57:11 CDT)
- Measuring hbonds between selections from different molecules (Tue Jun 05 2007 - 20:13:15 CDT)
- Move labels (Wed May 23 2007 - 16:21:33 CDT)
- Re: Error while running scripts: terminate called after throwing an instance of 'std::bad_alloc' (Mon Feb 05 2007 - 10:59:04 CST)
- Re: Error while running scripts: terminate called after throwing an instance of 'std::bad_alloc' (Sun Feb 04 2007 - 21:58:19 CST)
- Re: Error while running scripts: terminate called after throwing an instance of 'std::bad_alloc' (Fri Feb 02 2007 - 20:04:29 CST)
- Error while running scripts: terminate called after throwing an instance of 'std::bad_alloc' (Fri Feb 02 2007 - 16:16:04 CST)
- Re: Segmentation fault when trying to load GROMACS trajectories (Mon Jun 12 2006 - 14:10:19 CDT)
- Segmentation fault when trying to load GROMACS trajectories (Mon Jun 12 2006 - 11:47:06 CDT)
- Re: Launching Tk Console (Wed May 10 2006 - 19:00:57 CDT)
- Launching Tk Console (Wed May 10 2006 - 11:23:42 CDT)
- Secondary Structure along a trajectory (Wed Apr 26 2006 - 18:44:21 CDT)
Artem Mamonov
- Memory leak using "moveby" command inside a loop (Wed Apr 14 2004 - 21:34:20 CDT)
Arturas
- solid color clipping plane - render with "scratches" (Tue Oct 25 2005 - 04:49:45 CDT)
- VMD shows bad structure with 'line' type (Fri Apr 02 2004 - 06:27:38 CST)
- Re: configure do nothing in Linux (???) - thank you ! (Thu Apr 01 2004 - 03:23:39 CST)
- configure do nothing (Linux) (Wed Mar 31 2004 - 09:22:54 CST)
- configure do nothing in Linux(???) (Wed Mar 31 2004 - 09:27:36 CST)
Arturas Ziemys
- Fast routines for distance evaluations using PBC. (Fri May 11 2007 - 11:52:49 CDT)
- polyethylene topology (Tue Dec 05 2006 - 12:05:57 CST)
- gofr (Wed Oct 11 2006 - 13:22:54 CDT)
- Recentering the box on target molecule and wraping (Mon Sep 11 2006 - 10:39:55 CDT)
- charmm toppology : internal coordinates (Tue Aug 22 2006 - 16:39:00 CDT)
- Manipulation on loaded MSMS surface (Tue Aug 15 2006 - 16:19:18 CDT)
- loading trajectory file (Mon Aug 07 2006 - 11:38:34 CDT)
Arturo Fernandez
- You can save 80% (Fri Apr 25 2008 - 05:58:21 CDT)
Arun Krishnan
- Re: Changing Beta values for each frame of a trajectory.. (Wed Jun 20 2007 - 23:39:21 CDT)
- Changing Beta values for each frame of a trajectory.. (Wed Jun 20 2007 - 22:08:17 CDT)
Asfa Ali
- regarding installation (Fri Apr 09 2010 - 10:45:45 CDT)
- VMD (Thu Feb 25 2010 - 13:18:21 CST)
- RMSD trajectory tools (Fri Feb 12 2010 - 06:16:22 CST)
Ashlynne Monroe
- capping or patching protein ends (Thu Mar 03 2011 - 10:40:37 CST)
asimplefunguy_at_netscape.net
- nvidia drivers and 64bit OS VMD/PYMOL (Mon Oct 24 2005 - 09:10:23 CDT)
Asmaa Elsheshiny
- apbs with vmd, no output (Tue May 10 2011 - 12:14:08 CDT)
- "can not find channel named ... (Wed Jul 28 2010 - 04:14:31 CDT)
Assa Sittner
- viewing .brix maps (Sun Mar 13 2005 - 04:58:03 CST)
Athanassios Stavrakoudis
- Re: Calculating system net charge with tcl in VMD (Mon Apr 27 2009 - 05:12:18 CDT)
Atila Iamarino
- removing water molecules (Mon Jun 04 2007 - 13:21:33 CDT)
- Re: Saving mol2 file (Wed Apr 18 2007 - 10:50:57 CDT)
- Saving mol2 file (Mon Apr 16 2007 - 12:36:00 CDT)
atila petrosian
- contact map for Protein-DNA interaction (Mon Jul 12 2010 - 02:19:13 CDT)
Audrey Salazar
- Questions abt VMD plugins (Fri Sep 14 2007 - 08:59:48 CDT)
- Re: Installing VMD to work with MSMS (Tue Aug 14 2007 - 13:42:35 CDT)
- Installing VMD to work with MSMS (Tue Aug 14 2007 - 11:07:38 CDT)
- Archived Spam in the VMD-L Mailing List (Tue Aug 14 2007 - 10:00:30 CDT)
- Re: Automatic PSF Builder Help (Mon Aug 06 2007 - 14:47:08 CDT)
- Re: Automatic PSF Builder Help (Mon Aug 06 2007 - 14:27:52 CDT)
- Automatic PSF Builder Help (Mon Aug 06 2007 - 11:16:12 CDT)
Aurelie.DeLuca_at_sanofi-aventis.com
- RMSD between two structures without the same number of atoms (Fri Apr 18 2008 - 08:08:39 CDT)
Aurore Zyto
- Cartoon representation for large molecules (Wed Dec 31 2003 - 15:43:11 CST)
Aurum Bai
- About "Visualization and Analysis of CPMD data with VMD" tutorial (Thu Dec 10 2009 - 02:29:22 CST)
- Is it the bug of VMD1.87_partool? (Wed Nov 18 2009 - 06:29:56 CST)
- How to compile the source of VMD1.8.7 on linux system (Fri Aug 07 2009 - 00:10:40 CDT)
- Why the win_version of vmd1.86 can not change to python interpreter? (Sat Aug 01 2009 - 08:21:06 CDT)
Austin Small
- RE: Can't execvp vmd_SOLARISX86 (Tue Sep 25 2007 - 16:14:16 CDT)
- Can't execvp vmd_SOLARISX86 (Sun Sep 23 2007 - 23:42:50 CDT)
- vmdbasename: Undefined variable (Sat Sep 08 2007 - 12:13:41 CDT)
AustinSmall_at_comcast.net
- VMD plugin error src/webpdbplugin.c (Sun Aug 12 2007 - 18:08:17 CDT)
- Re: gmake invalid option --c install (Sat Aug 11 2007 - 12:52:32 CDT)
- gmake invalid option --c install (Sat Aug 11 2007 - 10:47:45 CDT)
- VMD plugins error (Mon Aug 06 2007 - 22:18:52 CDT)
- (no subject) (Thu Jul 26 2007 - 16:06:23 CDT)
- installation errors with src/hesstrans_wrap.C (Thu Jul 26 2007 - 16:16:39 CDT)
Avell Diroll
- Re: Hydrophobicity plots in VMD (Tue Nov 27 2007 - 03:22:21 CST)
- Re: Moving volume data with molecule (Thu Mar 29 2007 - 11:59:01 CDT)
- Moving volume data with molecule (Thu Mar 29 2007 - 10:05:40 CDT)
- Re: read the pdb file using VMD (Wed Mar 07 2007 - 17:39:38 CST)
- Re: Isosurface rendering (Thu Feb 22 2007 - 08:11:28 CST)
- Re: Isosurface rendering (Wed Feb 21 2007 - 06:42:05 CST)
- Isosurface rendering (Tue Feb 20 2007 - 08:52:35 CST)
avl211_at_lehigh.edu
- Problem With Psfgen again (Fri Jul 17 2009 - 13:53:49 CDT)
- Problems with psfgen (Thu Jul 16 2009 - 16:06:31 CDT)
Axel Berg
- questions about MSMS and H-bonds (Fri Mar 05 1999 - 06:38:48 CST)
- MSMS in VMD (Tue Oct 14 1997 - 07:58:11 CDT)
Axel Kohlmeyer
- Re: Movie making with smoothed trajectories (Thu May 24 2012 - 12:03:04 CDT)
- Re: TR: VMD atomselect with cartesian reference (Thu May 24 2012 - 09:13:04 CDT)
- Re: vmd on Ubuntu: tcl howto (Wed May 23 2012 - 07:09:28 CDT)
- Re: RMSF and bigdcd (Tue May 22 2012 - 18:53:22 CDT)
- Re: libGLU.so missing? (Fri May 18 2012 - 19:53:59 CDT)
- Re: file splitting (Thu May 17 2012 - 11:11:00 CDT)
- Re: panel missing! (Thu May 17 2012 - 10:16:40 CDT)
- Re: file splitting (Thu May 17 2012 - 07:34:47 CDT)
- Re: how to calculate PBC box volume in VMD? (Thu May 17 2012 - 02:31:06 CDT)
- Re: panel missing! (Wed May 16 2012 - 12:23:18 CDT)
- Re: Making only a subset of atoms transparent (or otherwise non-emphasized) (Tue May 15 2012 - 13:38:17 CDT)
- Re: APBS for small molecules (Tue May 15 2012 - 09:22:02 CDT)
- Re: APBS for small molecules (Tue May 15 2012 - 00:41:56 CDT)
- Re: Loop for (Thu May 10 2012 - 22:06:41 CDT)
- Re: Loop for (Thu May 10 2012 - 20:00:51 CDT)
- Re: VMD1.9.1 is crashing my system (Thu May 10 2012 - 17:19:50 CDT)
- Re: PBC missed in Amber MD (Thu May 10 2012 - 13:43:31 CDT)
- Re: flashing the VMD (Thu May 10 2012 - 10:49:11 CDT)
- Re: PBC missed in Amber MD (Thu May 10 2012 - 09:05:04 CDT)
- Re: flashing the VMD (Thu May 10 2012 - 08:41:00 CDT)
- Re: flashing the VMD (Wed May 09 2012 - 11:01:54 CDT)
- Re: flashing the VMD (Tue May 08 2012 - 16:26:26 CDT)
- Re: flashing the VMD (Tue May 08 2012 - 16:22:57 CDT)
- Re: flashing the VMD (Tue May 08 2012 - 09:18:17 CDT)
- Re: counting specific atom types (Tue May 08 2012 - 09:24:20 CDT)
- Re: flashing the VMD (Tue May 08 2012 - 09:09:27 CDT)
- Re: diffusion coefficient plug-in in VMD (Tue May 08 2012 - 08:12:35 CDT)
- Re: flasshing the VMD (Tue May 08 2012 - 08:16:53 CDT)
- Re: flasshing the VMD (Mon May 07 2012 - 22:10:30 CDT)
- Re: strange coloring (Mon May 07 2012 - 16:05:49 CDT)
- Re: .trr files slow to load (Mon May 07 2012 - 12:55:52 CDT)
- Re: %-sign shortcut for mouse->force->atom not working (Sun May 06 2012 - 14:01:37 CDT)
- Re: Make "Load all at once" the default? Adding representations? (Tue May 01 2012 - 19:13:11 CDT)
- Re: Problem with moving protein for all frames (Tue May 01 2012 - 17:04:37 CDT)
- Re: Make "Load all at once" the default? Adding representations? (Tue May 01 2012 - 16:54:49 CDT)
- Re: helical content script (Tue May 01 2012 - 07:28:05 CDT)
- Re: 3D density in the specific part of the simulation box (Tue May 01 2012 - 07:34:55 CDT)
- Re: visualization of HOMO&LUMO in vmd (Tue May 01 2012 - 07:31:29 CDT)
- Re: how to use the AutoIMD "Tool control" panel. (Mon Apr 30 2012 - 12:34:07 CDT)
- Re: writing pair/bond/angle/dihedral information for lammps input (Sun Apr 29 2012 - 23:52:25 CDT)
- Re: writing pair/bond/angle/dihedral information for lammps input (Sun Apr 29 2012 - 18:18:24 CDT)
- Re: measure gofr script (Sat Apr 28 2012 - 12:33:09 CDT)
- Re: measure gofr script (Sat Apr 28 2012 - 10:11:58 CDT)
- Re: water mean residence time (Fri Apr 27 2012 - 18:30:21 CDT)
- Re: Problem with generating psf using CGENFF (Thu Apr 26 2012 - 12:41:38 CDT)
- Re: H-H dynamic bonds (Mon Apr 23 2012 - 18:10:58 CDT)
- Re: openGL x,y position (Sun Apr 22 2012 - 22:12:58 CDT)
- Re: openGL x,y position (Sun Apr 22 2012 - 21:46:14 CDT)
- Re: Re: Movie Plugin (Sun Apr 22 2012 - 12:32:41 CDT)
- Re: HOOMD problems (Fri Apr 20 2012 - 20:19:43 CDT)
- Re: gofr limit, Kirkwood-Buff integrals (Fri Apr 20 2012 - 17:50:26 CDT)
- Re: HOOMD problems (Fri Apr 20 2012 - 16:37:56 CDT)
- Re: gofr limit, Kirkwood-Buff integrals (Fri Apr 20 2012 - 14:11:28 CDT)
- Re: Valence bond force field in NAMD (Thu Apr 19 2012 - 12:53:26 CDT)
- Re: Misfunction of some plugins if compiled (Wed Apr 18 2012 - 21:18:53 CDT)
- Re: Units of Isovalue Slider in Isovalue Drawing Method (Wed Apr 18 2012 - 21:10:24 CDT)
- Re: Saving coordinates that meet selection criteria for each frame (Tue Apr 17 2012 - 19:20:56 CDT)
- Re: Is it possible to save the position and angle of the camera for future VMD sessions? (Fri Apr 13 2012 - 18:57:22 CDT)
- Re: Default representation style in command line (Fri Apr 13 2012 - 07:21:39 CDT)
- Re: Drawing a high resolution transparent or translucent sphere (Wed Apr 11 2012 - 23:45:18 CDT)
- Re: saving dcd file different if by script or by interactive mode (Tue Apr 10 2012 - 18:16:03 CDT)
- Re: topotools writelammps data (Tue Apr 10 2012 - 18:15:16 CDT)
- Re: VMD QUESTION( Movie making ) (Mon Apr 09 2012 - 17:45:21 CDT)
- Re: IMD - remove forces on mouse release (Sun Apr 08 2012 - 14:12:19 CDT)
- Re: using min. image. conven. for transport properties (Wed Apr 04 2012 - 09:13:37 CDT)
- Re: Auto Bead Display Size using topotools (Mon Apr 02 2012 - 15:59:06 CDT)
- Re: python error? (Mon Apr 02 2012 - 13:48:02 CDT)
- Re: Printing Coordinates with Tcl/Tk (Fri Mar 30 2012 - 13:38:57 CDT)
- Re: Plotting of Co-ordinates on VMD (Fri Mar 30 2012 - 12:49:51 CDT)
- Re: bondsrecalc question (Fri Mar 30 2012 - 12:46:52 CDT)
- Re: Dynamically displaying the length of hydrogen bonds (Fri Mar 30 2012 - 12:44:35 CDT)
- Re: Is there any way to stop the display of bonds for bonded atoms on opposite sides of a periodic boundary without unwrapping? (Fri Mar 30 2012 - 08:13:09 CDT)
- Re: secondary structure calculation (Thu Mar 29 2012 - 08:01:38 CDT)
- Re: kill source'd tcl script (Wed Mar 28 2012 - 08:50:02 CDT)
- Re: secondary structure calculation (Tue Mar 27 2012 - 15:26:26 CDT)
- Re: starting tkcon (Wed Mar 21 2012 - 11:20:36 CDT)
- Re: Define "color Element" through rgb values (Mon Mar 19 2012 - 12:55:31 CDT)
- Re: Desmond Trajectory Files on the fly in VMD (Tue Mar 13 2012 - 08:56:45 CDT)
- Re: Drawing the simulation box from a Gromacs trajectory (Mon Mar 12 2012 - 14:30:23 CDT)
- Re: make movies with user-defined script (Fri Mar 09 2012 - 19:35:32 CST)
- Re: VMD Display Error - Detected X11 'Composite' extension (Thu Mar 08 2012 - 21:06:08 CST)
- Re: Individual components of RMSD? (Thu Mar 08 2012 - 13:07:49 CST)
- Re: Memory used by VMD is much less than installed (Wed Mar 07 2012 - 06:34:44 CST)
- Re: information regarding tcl script for cell volume changing with each frame (Sat Mar 03 2012 - 17:25:43 CST)
- Re: information regarding tcl script for cell volume changing with each frame (Sat Mar 03 2012 - 14:45:14 CST)
- Re: Calculating RDF from xyz file (Thu Mar 01 2012 - 17:36:46 CST)
- Re: Adsorption VMD Tcl script error (Wed Feb 29 2012 - 16:56:31 CST)
- Re: How to change the python include and linkage path in configure script (Mon Feb 27 2012 - 13:33:18 CST)
- Re: Plugins use after compilation question (Mon Feb 27 2012 - 13:30:49 CST)
- Re: From Vmd to lammps data file (Mon Feb 27 2012 - 09:19:31 CST)
- Re: From Vmd to lammps data file (Mon Feb 27 2012 - 08:07:24 CST)
- Re: [request] Best practices for rendering frames and making movies (Tue Feb 21 2012 - 18:29:19 CST)
- Re: .xyz bond (Mon Feb 20 2012 - 06:07:02 CST)
- Re: Distance between center of mass of two amino acid residues. (Sun Feb 19 2012 - 14:43:17 CST)
- Re: Distance between center of mass of two amino acid residues. (Sun Feb 19 2012 - 11:37:25 CST)
- Re: quicksurf and PBC (Sat Feb 18 2012 - 10:57:01 CST)
- Re: trajector@VMD (Fri Feb 17 2012 - 09:38:26 CST)
- Re: append glow lights to a VMD/Tachyon scene (Fri Feb 17 2012 - 08:11:53 CST)
- Re: Create multiple tcl interpreter child instances within VMD to run several scripts at once (Thu Feb 16 2012 - 12:46:48 CST)
- Re: Hbonds Analysis (Wed Feb 15 2012 - 18:14:24 CST)
- Re: Hbonds Analysis (Tue Feb 14 2012 - 15:36:13 CST)
- Re: radial distribution funtion (Mon Feb 13 2012 - 21:59:32 CST)
- Re: Timestep (Mon Feb 13 2012 - 16:57:22 CST)
- Re: radial distribution funtion (Mon Feb 13 2012 - 16:21:16 CST)
- Re: PROPKA doesn't work in recent VMD1.9.1 (Sun Feb 12 2012 - 09:47:21 CST)
- Re: charges in VMD 1.9 vs. VMD 1.8.7 (Fri Feb 10 2012 - 08:38:12 CST)
- Re: radial distribution function (Thu Feb 09 2012 - 21:09:54 CST)
- Re: charge visualization (Tue Feb 07 2012 - 19:49:17 CST)
- Re: Use variable in atomselect command (Tue Feb 07 2012 - 16:15:55 CST)
- Re: Configure VMD while GROMACS Installation (Tue Feb 07 2012 - 05:52:22 CST)
- Re: Tcl script error (Mon Feb 06 2012 - 11:54:35 CST)
- Re: PSFGEN and Reading Bonds from PDB Files (Mon Feb 06 2012 - 11:52:27 CST)
- Re: Tcl script error (Mon Feb 06 2012 - 12:02:47 CST)
- Re: Tcl script error (Mon Feb 06 2012 - 11:46:43 CST)
- Re: PSFGEN and Reading Bonds from PDB Files (Sun Feb 05 2012 - 15:36:29 CST)
- Re: The spheres become oval, getting close to the screen borders (Sun Feb 05 2012 - 11:07:34 CST)
- Re: create images in vmd (Fri Feb 03 2012 - 06:34:53 CST)
- Re: how to display the full molecule when use "within" option? (Fri Feb 03 2012 - 06:32:34 CST)
- Re: NewRibbons/NewCartoon problem due to missing CUDA ? (Thu Feb 02 2012 - 07:52:24 CST)
- Re: namd-l: Gromacs analysis tools for Namd output (Wed Feb 01 2012 - 11:48:47 CST)
- Re: Rmsd script with arguments (Tue Jan 31 2012 - 15:55:06 CST)
- Re: NewRibbons/NewCartoon problem due to missing CUDA ? (Tue Jan 31 2012 - 07:18:10 CST)
- Re: Quantitative meaning of volmap isosurface (Tue Jan 31 2012 - 07:25:02 CST)
- Re: how to fix structural alignment pdbs (Tue Jan 31 2012 - 07:22:44 CST)
- Re: how to configure Tachyon image render size? (Mon Jan 30 2012 - 15:46:42 CST)
- Re: problem with new plugin installation. (Sat Jan 28 2012 - 10:33:50 CST)
- Re: Cutting a sphere with a specified radius along a trajectory (Fri Jan 27 2012 - 17:24:23 CST)
- Re: package ::struct::set not available (Thu Jan 26 2012 - 09:40:06 CST)
- Re: VMD 1.9.1 beta 2 to be posted tonight... (Thu Jan 26 2012 - 06:52:27 CST)
- Re: unit cell volume is zero (Wed Jan 25 2012 - 16:03:04 CST)
- Re: Re: atomselect counting (Wed Jan 25 2012 - 14:46:05 CST)
- Re: atomselect counting (Wed Jan 25 2012 - 09:12:16 CST)
- Re: Topotools - limit to size of system it can be used for? (Tue Jan 24 2012 - 08:46:25 CST)
- Re: Topotools - limit to size of system it can be used for? (Tue Jan 24 2012 - 07:13:27 CST)
- Re: ERROR) measure gofr: bad frame range given. max (Mon Jan 23 2012 - 16:25:37 CST)
- Re: ImportError: cannot import name AtomSel (Mon Jan 23 2012 - 16:33:29 CST)
- Re: ERROR) measure gofr: bad frame range given. max (Mon Jan 23 2012 - 14:13:02 CST)
- Re: ERROR) measure gofr: bad frame range given. max (Mon Jan 23 2012 - 12:51:41 CST)
- Re: ERROR) measure gofr: bad frame range given. max (Mon Jan 23 2012 - 11:53:04 CST)
- Re: ERROR) measure gofr: bad frame range given. max (Mon Jan 23 2012 - 11:55:22 CST)
- Re: ERROR) measure gofr: bad frame range given. max (Mon Jan 23 2012 - 09:29:37 CST)
- Re: VMD and Centos 6 (Sun Jan 22 2012 - 10:19:06 CST)
- Re: ionic radii of sodium and chloride (Fri Jan 20 2012 - 20:17:22 CST)
- Re: ionic radii of sodium and chloride (Fri Jan 20 2012 - 11:03:06 CST)
- Re: ionic radii of sodium and chloride (Thu Jan 19 2012 - 21:12:49 CST)
- Re: Generating a psf file using VMD (Thu Jan 19 2012 - 17:55:01 CST)
- Re: Re: CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? (Thu Jan 19 2012 - 13:55:04 CST)
- Re: rendering question (Thu Jan 19 2012 - 11:55:22 CST)
- Re: Haptic devices for IMD (Wed Jan 18 2012 - 11:24:19 CST)
- Re: New "surf" calculations in VMD 1.9.1 beta (Wed Jan 18 2012 - 08:00:54 CST)
- Re: Using threads in VMD's tcl (Tue Jan 17 2012 - 17:17:25 CST)
- Re: Question regarding HBond analysis (Tue Jan 17 2012 - 13:19:21 CST)
- Re: Using threads in VMD's tcl (Tue Jan 17 2012 - 11:05:20 CST)
- Re: Question regarding HBond analysis (Mon Jan 16 2012 - 18:13:55 CST)
- Re: Problems in setting up low pH systems (Wed Jan 11 2012 - 21:26:28 CST)
- Re: vmd-density-profile (Sat Jan 07 2012 - 10:23:44 CST)
- Re: method for user-defined coloring (Fri Jan 06 2012 - 12:44:15 CST)
- Re: select whole residues (Tue Jan 03 2012 - 18:39:05 CST)
- Re: represent water molecules (Mon Jan 02 2012 - 13:19:41 CST)
- Re: external field application (Mon Jan 02 2012 - 12:21:06 CST)
- Re: represent water molecules (Mon Jan 02 2012 - 11:42:41 CST)
- Re: external field application (Sun Jan 01 2012 - 11:11:24 CST)
- Re: using xtc file to generate pdb's (Tue Dec 27 2011 - 17:32:59 CST)
- Re: paratool CHARMM style charges (Tue Dec 27 2011 - 09:46:32 CST)
- Re: Change Color Scale (Wed Dec 21 2011 - 15:04:07 CST)
- Re: Ionization (Wed Dec 21 2011 - 08:25:16 CST)
- Re: Assign velocities so I can color by velocity (Mon Dec 19 2011 - 12:32:34 CST)
- Re: vmd-l DynamicBond between two given type of atoms (Mon Dec 19 2011 - 12:08:37 CST)
- Re: Assign velocities so I can color by velocity (Mon Dec 19 2011 - 12:05:45 CST)
- Re: Solvating with Nonaqueous Solvent (Thu Dec 15 2011 - 16:38:26 CST)
- Re: Solvating with Nonaqueous Solvent (Tue Dec 13 2011 - 14:16:12 CST)
- Re: package MDEnergy (Tue Dec 13 2011 - 13:44:01 CST)
- Re: Povray renders labels always centered (Mon Dec 12 2011 - 10:08:49 CST)
- Re: Tachyon render problem (Sun Dec 11 2011 - 18:09:43 CST)
- Re: Tachyon render problem (Fri Dec 09 2011 - 09:55:22 CST)
- Re: TCL strangeness (Thu Dec 08 2011 - 22:37:16 CST)
- Re: Script for Angular Distribution Function? (Wed Dec 07 2011 - 10:48:47 CST)
- Re: topology and parameter files for H2 and O2 (Tue Dec 06 2011 - 07:46:33 CST)
- Re: out-of-order writegmx with topotools 1.2 (Mon Dec 05 2011 - 00:07:18 CST)
- Re: Rendering long and high-quality movies from VMD (Sun Dec 04 2011 - 23:19:35 CST)
- Re: Rendering long and high-quality movies from VMD (Sun Dec 04 2011 - 23:27:48 CST)
- Re: out-of-order writegmx with topotools 1.2 (Sat Dec 03 2011 - 18:18:38 CST)
- Re: Viewing System of Molecules where coordinates are in text file. (Thu Dec 01 2011 - 22:28:12 CST)
- Re: convertind dcd to xyz file (Tue Nov 29 2011 - 17:43:05 CST)
- Re: Can Catdcd Write Out Periodic Cell Size Information? (Mon Nov 28 2011 - 17:13:02 CST)
- Re: Can Catdcd Write Out Periodic Cell Size Information? (Mon Nov 28 2011 - 11:45:47 CST)
- Re: VMD never finishes reading vis. state file, stalls and hoggs CPU (Mon Nov 28 2011 - 10:21:20 CST)
- Re: vmd solvate (Sun Nov 27 2011 - 15:00:26 CST)
- Re: tcl script (Fri Nov 25 2011 - 14:52:32 CST)
- Re: tcl script (Fri Nov 25 2011 - 13:16:32 CST)
- Re: VMD never finishes reading vis. state file, stalls and hoggs CPU (Fri Nov 25 2011 - 09:38:01 CST)
- Re: how to convert Desmond trajectories into PDB in text mode? (Thu Nov 24 2011 - 14:48:44 CST)
- Re: How to save Automatic psf builder script (Thu Nov 24 2011 - 14:45:59 CST)
- Re: Change coordinates (Thu Nov 24 2011 - 14:42:53 CST)
- Re: POPE CHARMM36 generations error. (Thu Nov 24 2011 - 14:46:47 CST)
- Re: movie out of principal component analysis (Tue Nov 22 2011 - 08:10:39 CST)
- Re: bash scripts quits after few frames (Tue Nov 22 2011 - 06:20:24 CST)
- Re: compile VMD 1.9 with FLTK 1.3 (Mon Nov 21 2011 - 08:37:31 CST)
- Re: Maximum length of an extended peptide? (Tue Nov 15 2011 - 22:57:45 CST)
- Re: Maximum length of an extended peptide? (Tue Nov 15 2011 - 19:55:57 CST)
- Re: pbc wrap (Mon Nov 14 2011 - 09:57:06 CST)
- Re: how to place polymers on carbon nanotube surface (Fri Nov 11 2011 - 13:27:35 CST)
- Re: topotools (Fri Nov 11 2011 - 10:14:23 CST)
- Re: Re: Save "Visulaization State" from within Tk Console (Fri Nov 11 2011 - 08:57:13 CST)
- Re: Save "Visulaization State" from within Tk Console (Fri Nov 11 2011 - 08:41:38 CST)
- Re: topotools (Fri Nov 11 2011 - 07:27:27 CST)
- Re: UPDATE OCCUPANCY (Fri Nov 11 2011 - 07:34:53 CST)
- Re: Couldn't locate ppmtompeg (Thu Nov 10 2011 - 15:47:31 CST)
- Re: pbwithin selection (Thu Nov 10 2011 - 09:27:47 CST)
- Re: How to parse very large trajectories? (Wed Nov 09 2011 - 15:44:30 CST)
- Re: Suppress "Info)" messages (Mon Nov 07 2011 - 13:15:19 CST)
- Re: tcl procedure to set data (Sun Nov 06 2011 - 20:31:00 CST)
- Re: lipid bilayer thickness (Sun Nov 06 2011 - 06:14:50 CST)
- Re: Batch image creation (Fri Nov 04 2011 - 18:07:41 CDT)
- Re: find avgstruct (Fri Nov 04 2011 - 07:29:32 CDT)
- Re: radius of gyration (Wed Nov 02 2011 - 15:49:19 CDT)
- Re: VRPN-ICMS conflict with NVidia driver (Tue Nov 01 2011 - 19:08:07 CDT)
- Re: Use of RBCG to convert multiple frames from atomistic trajectory to Coarse grained (Tue Nov 01 2011 - 17:09:50 CDT)
- Re: Finding resname without using atomselect? (Tue Nov 01 2011 - 16:50:51 CDT)
- Re: VRPN-ICMS conflict with NVidia driver (Tue Nov 01 2011 - 08:15:36 CDT)
- Re: haptic devices VMD/NAMD/IMD (Mon Oct 31 2011 - 16:55:56 CDT)
- Re: Dynamic lines (Mon Oct 31 2011 - 14:32:47 CDT)
- Re: Is it possible to automatically label all bonds? (Mon Oct 31 2011 - 08:10:08 CDT)
- Re: Run a variable through VMD Tk/Tcl console .vmdrc file (Sun Oct 30 2011 - 10:04:09 CDT)
- Re: Is it possible to automatically label all bonds? (Thu Oct 27 2011 - 12:42:02 CDT)
- Re: Selecting Atoms within a Volume, Manipulating Volumetric Data (Tue Oct 25 2011 - 08:03:13 CDT)
- Re: superimposing groups of three atoms (Fri Oct 21 2011 - 13:07:16 CDT)
- Re: coloring bonds on the same segments differently from those between segments (Thu Oct 20 2011 - 20:10:23 CDT)
- Re: angle calculation trajectory (Tue Oct 18 2011 - 13:22:15 CDT)
- Re: atomselect and macro (Sat Oct 15 2011 - 17:33:49 CDT)
- Re: Problem building POPE membrane with plugin using CHARMM36 (Fri Oct 14 2011 - 13:38:52 CDT)
- Re: Error running IED with VMD (Fri Oct 14 2011 - 10:09:16 CDT)
- Re: Installing VMD on Debian Linux (Fri Oct 14 2011 - 07:47:38 CDT)
- Re: How to select whole residues when at least one atom is within a specific distance (Thu Oct 13 2011 - 14:37:24 CDT)
- Re: topotools (Wed Oct 12 2011 - 16:46:59 CDT)
- Re: amber traj to pqr - radii error (Mon Oct 10 2011 - 13:40:51 CDT)
- Re: GPU choice for large systems (Sun Oct 02 2011 - 14:34:39 CDT)
- Re: GPU choice for large systems (Sat Oct 01 2011 - 08:53:36 CDT)
- Re: methanol_solvent box (Sat Oct 01 2011 - 08:31:05 CDT)
- Re: GPU choice for large systems (Sat Oct 01 2011 - 07:58:19 CDT)
- Re: methanol_solvent box (Sat Oct 01 2011 - 07:08:44 CDT)
- Re: VMD with LAMMPS trjaectory - help? (Thu Sep 29 2011 - 10:08:37 CDT)
- Re: Re: vmd topotools 1.2 (Thu Sep 29 2011 - 08:16:39 CDT)
- Re: VMD meets Andy Warhol/Campbell's Soup on display wall (Thu Sep 29 2011 - 08:22:26 CDT)
- Re: VMD with LAMMPS trjaectory - help? (Wed Sep 28 2011 - 19:27:16 CDT)
- Re: VMD meets Andy Warhol/Campbell's Soup on display wall (Wed Sep 28 2011 - 19:46:03 CDT)
- Re: vmd topotools 1.2 error (Wed Sep 28 2011 - 10:01:43 CDT)
- Re: vmd topotools 1.2 error (Wed Sep 28 2011 - 09:06:59 CDT)
- Re: Associating .crd file extension with COR Plugin (Wed Sep 28 2011 - 08:51:38 CDT)
- Re: question on "Recompile VMD with larger index types" (Wed Sep 28 2011 - 05:44:13 CDT)
- Re: problem of exceeding max atom number (Tue Sep 27 2011 - 13:41:45 CDT)
- Re: Re: Selecting a laptop for VMD and NAMD (was: CUDA cores seen by VMD on GT540M) (Tue Sep 27 2011 - 10:36:20 CDT)
- Re: convert .coor to pdb (Mon Sep 26 2011 - 07:04:11 CDT)
- Re: RDF related problems (Sat Sep 24 2011 - 16:19:21 CDT)
- Re: Locked files in Windows 7 (Thu Sep 22 2011 - 07:49:47 CDT)
- Re: NetCDF plugin (Tue Sep 20 2011 - 18:59:11 CDT)
- Re: select each element of array (Tue Sep 20 2011 - 07:20:43 CDT)
- Re: Problem with measuring dihedrals (Tue Sep 20 2011 - 04:55:10 CDT)
- Re: select each element of array (Mon Sep 19 2011 - 20:18:35 CDT)
- Re: RMSD heatmapper -plugin (Mon Sep 19 2011 - 12:49:40 CDT)
- Re: select each element of array (Mon Sep 19 2011 - 12:10:44 CDT)
- Re: Adding water in protein (Mon Sep 19 2011 - 07:01:15 CDT)
- Re: topotools readvarxyz (Mon Sep 19 2011 - 07:03:25 CDT)
- Re: bug in Hbond Option (Mon Sep 19 2011 - 06:51:38 CDT)
- RE: RDF calculation for production steps (Thu Sep 15 2011 - 10:38:16 CDT)
- Re: LINK or PACTH command in VMD (Wed Sep 14 2011 - 13:38:40 CDT)
- Re: Does Paratool support CgenFF? (Wed Sep 14 2011 - 09:37:26 CDT)
- Re: RDF calculation for production steps (Tue Sep 13 2011 - 23:51:17 CDT)
- Re: Showing and Calculating the amount of water molecules inside carbon nanotube (Tue Sep 13 2011 - 23:54:39 CDT)
- Re: linux issues (Mon Sep 12 2011 - 12:03:04 CDT)
- Re: Displaying residues on chain A within X of chain B (Fri Sep 09 2011 - 20:27:25 CDT)
- Re: Displaying residues on chain A within X of chain B (Fri Sep 09 2011 - 17:51:33 CDT)
- Re: output values in my script (Thu Sep 08 2011 - 19:51:54 CDT)
- Re: Visualizing Trajectory file: .pdb or .xyz (Wed Sep 07 2011 - 18:11:44 CDT)
- Re: Visualizing Trajectory file: .pdb or .xyz (Wed Sep 07 2011 - 14:55:10 CDT)
- Re: draw intersection volume between two spheres (Wed Sep 07 2011 - 10:35:43 CDT)
- Re: VMD align to principal axis (Tue Sep 06 2011 - 23:31:11 CDT)
- Re: define water cavity using atom selection in graphical representations window (Tue Sep 06 2011 - 09:28:45 CDT)
- Re: define water cavity using atom selection in graphical representations window (Tue Sep 06 2011 - 05:11:00 CDT)
- Re: define water cavity using atom selection in graphical representations window (Tue Sep 06 2011 - 05:31:23 CDT)
- Re: plugin (Mon Sep 05 2011 - 14:37:19 CDT)
- Re: Density Profile in VMD (Mon Sep 05 2011 - 08:39:31 CDT)
- Re: Radial distribution function (Sat Sep 03 2011 - 16:25:05 CDT)
- Re: How to read pdbqt file? (Sat Sep 03 2011 - 15:53:58 CDT)
- Re: Radial distribution function (Sat Sep 03 2011 - 11:20:33 CDT)
- Re: Movie maker in VMD (Fri Sep 02 2011 - 12:14:32 CDT)
- Re: Fw: Fw: Hbond in VMD (Wed Aug 31 2011 - 15:56:52 CDT)
- Re: loading a trajectory where particles aren't conservd (Wed Aug 31 2011 - 15:42:14 CDT)
- Re: Fw: Hbond in VMD (Wed Aug 31 2011 - 13:27:21 CDT)
- Re: Fw: Hbond in VMD (Wed Aug 31 2011 - 13:16:11 CDT)
- Re: Saving ionized.psf from add ions plug in of VMD (Wed Aug 31 2011 - 11:34:08 CDT)
- Re: CUDA cores seen by VMD on GT540M (Wed Aug 31 2011 - 10:17:39 CDT)
- Re: Hbond in VMD (Wed Aug 31 2011 - 07:45:45 CDT)
- Re: VMD display residues (Wed Aug 31 2011 - 06:22:04 CDT)
- Re: VMD display residues (Tue Aug 30 2011 - 13:19:46 CDT)
- Re: Fw: Lammps Output data format (Tue Aug 30 2011 - 12:45:15 CDT)
- Re: VMD movie (Tue Aug 30 2011 - 12:22:29 CDT)
- Re: VMD movie (Tue Aug 30 2011 - 11:28:37 CDT)
- Re: Lammps Output data format (Tue Aug 30 2011 - 10:54:19 CDT)
- Re: loading a trajectory where particles aren't conservd (Mon Aug 29 2011 - 17:26:22 CDT)
- Re: Lammps Output data format (Mon Aug 29 2011 - 13:20:02 CDT)
- Re: 3d viz? (Mon Aug 29 2011 - 10:37:24 CDT)
- Re: how to load Orient package in VMD (Wed Aug 24 2011 - 16:57:50 CDT)
- Re: how to load Orient package in VMD (Wed Aug 24 2011 - 16:47:49 CDT)
- Re: Mailing list problems (Wed Aug 24 2011 - 15:57:59 CDT)
- Re: visualizing unrealistic bonds (Tue Aug 23 2011 - 10:18:00 CDT)
- Re: making movie (Tue Aug 23 2011 - 09:59:59 CDT)
- Re: RMSD calculator extension (Tue Aug 23 2011 - 09:48:38 CDT)
- Re: Problem with psfgen (Tue Aug 23 2011 - 09:33:39 CDT)
- Re: visualizing unrealistic bonds (Tue Aug 23 2011 - 09:30:52 CDT)
- Re: Re: Wrap PBC inside unit cellâ€ (Tue Aug 23 2011 - 09:27:20 CDT)
- Re: making movie (Tue Aug 23 2011 - 09:28:57 CDT)
- Re: Wrap PBC inside unit cellâ€ (Tue Aug 23 2011 - 09:26:09 CDT)
- Re: Turning Label Info output off in vmd console (Fri Aug 19 2011 - 18:14:30 CDT)
- Re: Turning Label Info output off in vmd console (Thu Aug 18 2011 - 19:28:04 CDT)
- Re: How can I draw secondary structures if I only have the carbon alpha coordinates (Thu Aug 18 2011 - 13:27:42 CDT)
- Re: Re: namd-l: MMTools (Wed Aug 17 2011 - 20:28:28 CDT)
- Re: namd-l: MMTools (Wed Aug 17 2011 - 10:15:50 CDT)
- Re: changing label format with some arithmetic (Wed Aug 17 2011 - 10:13:09 CDT)
- Re: visualizing unrealistic bonds (Mon Aug 15 2011 - 12:07:13 CDT)
- Re: Re: Solvating a Protein in VMD using NON STANDARD SOLVENT (Sun Aug 14 2011 - 00:09:28 CDT)
- Re: Re: Solvating a Protein in VMD using NON STANDARD SOLVENT (Sat Aug 13 2011 - 08:47:57 CDT)
- Re: Re: Solvating a Protein in VMD using NON STANDARD SOLVENT (Sat Aug 13 2011 - 08:22:08 CDT)
- Re: package require help (Fri Aug 12 2011 - 03:51:27 CDT)
- Re: rmsf (Fri Aug 12 2011 - 03:52:10 CDT)
- Re: Vmd Problem (Thu Aug 11 2011 - 16:35:56 CDT)
- Re: Update selection every frame command (Thu Aug 11 2011 - 07:23:04 CDT)
- Re: Molefacture - VMD agreement (Thu Aug 11 2011 - 00:14:01 CDT)
- Re: namd-l: Solvation in VMD using Non Standard Solvent System (Wed Aug 10 2011 - 07:47:35 CDT)
- Re: TCL and Plugins (Tue Aug 09 2011 - 13:48:48 CDT)
- Re: script (Mon Aug 08 2011 - 22:37:15 CDT)
- Re: xtc plugin writing ability (Fri Aug 05 2011 - 09:09:00 CDT)
- Re: specden - IR spectral density calculator plugin (Thu Aug 04 2011 - 13:49:06 CDT)
- Re: viewing dcd files (Thu Aug 04 2011 - 13:44:33 CDT)
- Re: about psf file generation (Tue Aug 02 2011 - 07:43:29 CDT)
- Re: moveby command (Sun Jul 31 2011 - 09:50:29 CDT)
- Re: different number of atoms in each frame of the trajectory file (Fri Jul 29 2011 - 18:05:32 CDT)
- Re: Nvidia quadro Fx1300 problem (Fri Jul 29 2011 - 10:39:19 CDT)
- Re: How to save image in SVG format? (Tue Jul 26 2011 - 01:36:14 CDT)
- Re: Question about eval (Mon Jul 25 2011 - 14:33:37 CDT)
- Re: Understand a script (Mon Jul 25 2011 - 10:50:47 CDT)
- Re: Understand a script (Mon Jul 25 2011 - 10:23:31 CDT)
- Re: Avoid vmd closing with script (Mon Jul 25 2011 - 09:31:45 CDT)
- Re: namd-l: how to generate transparent figures? (Mon Jul 25 2011 - 03:48:10 CDT)
- Re: shades of licorice representation (Wed Jul 20 2011 - 08:57:58 CDT)
- Re: shades of licorice representation (Tue Jul 19 2011 - 10:02:52 CDT)
- Re: shades of licorice representation (Tue Jul 19 2011 - 08:44:13 CDT)
- Re: Hydration dynamics:Phrase selection problem in vmd (Mon Jul 18 2011 - 09:40:28 CDT)
- Re: Problem of installing VMD 1.8.3 on Fedora14 (Sun Jul 17 2011 - 16:52:34 CDT)
- Re: [lammps-users] Initial configurations / topology for LAMMPS (Thu Jul 14 2011 - 15:29:08 CDT)
- Re: How to change the VMD working Directory (Thu Jul 14 2011 - 09:58:26 CDT)
- Re: Add user output to DCD trajectories (Thu Jul 14 2011 - 09:23:45 CDT)
- Re: how to draw different set of points for different frames in a trajectory my script does not work (Tue Jul 12 2011 - 15:17:50 CDT)
- Re: script (Tue Jul 12 2011 - 11:58:55 CDT)
- Re: Retrieving Cremer-Pople parameters (Tue Jul 12 2011 - 09:03:56 CDT)
- Re: PBCwrap tools (Sun Jul 10 2011 - 11:38:26 CDT)
- Re: PBCwrap tools (Sun Jul 10 2011 - 05:34:09 CDT)
- Re: stereo anaglyph rendering (Sun Jul 10 2011 - 05:36:00 CDT)
- Re: PBCwrap tools (Sat Jul 09 2011 - 18:33:24 CDT)
- Re: import selection in array for script (Fri Jul 08 2011 - 15:04:46 CDT)
- Re: how to draw different set of points for different frames in a trajectory my script does not work (Fri Jul 08 2011 - 11:20:11 CDT)
- Re: how to draw different set of points for different frames in a trajectory my script does not work (Fri Jul 08 2011 - 08:31:17 CDT)
- Re: Re: Problem with for loop. (Thu Jul 07 2011 - 16:59:46 CDT)
- Re: script (Wed Jul 06 2011 - 19:01:31 CDT)
- Re: Re: Problem with for loop. (Wed Jul 06 2011 - 10:57:44 CDT)
- Re: Problem with for loop. (Wed Jul 06 2011 - 10:26:10 CDT)
- Re: Distance between atoms in frame (Tue Jul 05 2011 - 20:10:04 CDT)
- Re: Computer hangs on trying to launch VMD CUDA (Tue Jul 05 2011 - 15:08:03 CDT)
- Re: contacts and pbc (Sun Jul 03 2011 - 11:21:39 CDT)
- Re: Problem with loop. it s not going to the next peptide (Fri Jul 01 2011 - 17:06:25 CDT)
- Re: catdcd and velocity dcd file (Fri Jul 01 2011 - 10:45:16 CDT)
- Re: Display Multiple Bond Order (Wed Jun 29 2011 - 12:41:50 CDT)
- Re: About psf file (Wed Jun 29 2011 - 08:31:02 CDT)
- Re: Installation problem -Solvate (Wed Jun 29 2011 - 05:25:15 CDT)
- Re: Total Dipole Moment (Tue Jun 28 2011 - 20:02:59 CDT)
- Re: Total Dipole Moment (Tue Jun 28 2011 - 20:11:47 CDT)
- Re: Normalization of RDFs in gofr plugin (Tue Jun 28 2011 - 18:08:31 CDT)
- Re: Normalization of RDFs in gofr plugin (Tue Jun 28 2011 - 13:06:49 CDT)
- Re: Bond between two hydrogen atoms (Tue Jun 28 2011 - 12:56:11 CDT)
- Re: Changing representations on a per-atom per-timestep basis (Tue Jun 28 2011 - 12:14:19 CDT)
- Re: Re: best fit lines through two selections per each molecule ( I have 80 molecules) and the angle with another vector for each molecule (Tue Jun 28 2011 - 09:55:40 CDT)
- Re: VMD-I: rsmd calculation (Tue Jun 28 2011 - 09:53:26 CDT)
- Re: Total Dipole Moment (Tue Jun 28 2011 - 09:48:33 CDT)
- Re: color trajectory using specific values rather than color scale (Mon Jun 27 2011 - 10:32:51 CDT)
- Re: protein-water RDF (Mon Jun 27 2011 - 09:08:35 CDT)
- Re: not to display atoms in certain region (Fri Jun 24 2011 - 16:09:33 CDT)
- Re: align axes (Thu Jun 23 2011 - 13:42:44 CDT)
- Re: APBS installation problem (Wed Jun 22 2011 - 13:17:30 CDT)
- Re: Rotating a non-coordinate file (Wed Jun 22 2011 - 05:56:04 CDT)
- Re: invisible files in windows (Wed Jun 15 2011 - 17:37:36 CDT)
- Re: water is forming bonds between hydrogens (Wed Jun 15 2011 - 10:38:26 CDT)
- Re: rdf for specific group of atoms (Wed Jun 15 2011 - 09:14:46 CDT)
- Re: color sidechains differently (Tue Jun 14 2011 - 22:21:07 CDT)
- Re: Vmd vs QUANTA (Tue Jun 14 2011 - 04:55:11 CDT)
- Re: VolMap Tool Question (Mon Jun 13 2011 - 14:31:47 CDT)
- Re: showperiodic - not self? (Mon Jun 13 2011 - 12:51:04 CDT)
- Re: simulation in Nitrogen box (Sat Jun 11 2011 - 10:21:45 CDT)
- Re: topotools {.top} for Gromacs {.tpr} generation (Tue Jun 07 2011 - 15:24:30 CDT)
- Re: Problem with Starting vmd after Debian System Upgrade (Tue Jun 07 2011 - 12:19:42 CDT)
- Re: saving dcd with less frames (Tue Jun 07 2011 - 05:08:17 CDT)
- Re: Dipole Moment Monitoring (Mon Jun 06 2011 - 21:45:08 CDT)
- Re: topotools {.top} for Gromacs {.tpr} generation (Mon Jun 06 2011 - 19:14:57 CDT)
- Re: topotools {.top} for Gromacs {.tpr} generation (Mon Jun 06 2011 - 18:26:46 CDT)
- Re: For loops decelerate (Mon Jun 06 2011 - 16:36:31 CDT)
- Re: Tachyon post-render commands under Win-XP (Mon Jun 06 2011 - 09:25:14 CDT)
- Re: For loops decelerate (Fri Jun 03 2011 - 14:19:12 CDT)
- Re: For loops decelerate (Fri Jun 03 2011 - 13:57:27 CDT)
- Re: For loops decelerate (Thu Jun 02 2011 - 06:27:04 CDT)
- Re: charge information for the PMEpot plugin (Wed Jun 01 2011 - 12:25:04 CDT)
- Re: .gro format to .pqr format (Wed Jun 01 2011 - 10:52:24 CDT)
- Re: [lammps-users] using topotools to view lammps output (Wed Jun 01 2011 - 08:48:04 CDT)
- Re: problem with bigdcd rmsd calculaton output (Mon May 30 2011 - 23:16:30 CDT)
- Re: Issue with NAMD/VMD tutorial (Mon May 30 2011 - 14:49:19 CDT)
- Re: Issue with NAMD/VMD tutorial (Mon May 30 2011 - 13:15:58 CDT)
- Re: Protein cavities (Sun May 29 2011 - 17:31:44 CDT)
- Re: Save Coordinates for Multiple Loads (Sun May 29 2011 - 10:17:22 CDT)
- Re: Protein cavities (Sun May 29 2011 - 03:17:08 CDT)
- Re: use variable in atomselect (Fri May 27 2011 - 17:05:16 CDT)
- Re: measure fit - wrong alignment (Thu May 26 2011 - 13:17:43 CDT)
- Re: Mean value of el. potential ? (Wed May 25 2011 - 19:51:55 CDT)
- Re: surface of an atomic property (Wed May 25 2011 - 14:01:44 CDT)
- Re: trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 (Wed May 25 2011 - 05:35:42 CDT)
- Re: trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 (Tue May 24 2011 - 14:08:26 CDT)
- Re: trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 (Tue May 24 2011 - 12:14:39 CDT)
- Re: size for render (Tue May 24 2011 - 06:47:25 CDT)
- Re: vmd calculating wrong number of frames in xtc file using molinfo numframes ? (Mon May 23 2011 - 11:11:52 CDT)
- Re: Non-cuda version of VMD on Linux? (Sun May 22 2011 - 05:17:34 CDT)
- Re: color atom by stress (Sat May 21 2011 - 16:25:18 CDT)
- Re: Displaying protein AND ligand from an amber trajectory (Fri May 20 2011 - 09:07:14 CDT)
- Re: Aligning two proteins of varying atom numbers (Fri May 20 2011 - 05:47:18 CDT)
- Re: Aligning two proteins of varying atom numbers (Thu May 19 2011 - 11:17:37 CDT)
- Re: run and close vmd with bash script? (Wed May 18 2011 - 10:42:53 CDT)
- Re: run and close vmd with bash script? (Wed May 18 2011 - 08:23:49 CDT)
- Re: Do psf generated by psfgen and psf produced by "$sel writepsf" function in VMD have different impact on MD simulation using NAMD? (Tue May 17 2011 - 09:44:26 CDT)
- Re: convert prmtop to psf (Tue May 17 2011 - 05:56:15 CDT)
- Re: sharing atoms (Mon May 16 2011 - 09:43:13 CDT)
- Re: PhD position in Computational Structural Biology at MPI Muenster (Sun May 15 2011 - 16:47:40 CDT)
- Re: PhD position in Computational Structural Biology at MPI Muenster (Sun May 15 2011 - 11:51:22 CDT)
- Re: Compiling plugins without netcdf support returns an error. (Thu May 12 2011 - 19:40:17 CDT)
- RE: Atom ID/Color change with timesteps (Thu May 12 2011 - 16:21:21 CDT)
- Re: Compiling plugins without netcdf support returns an error. (Thu May 12 2011 - 15:56:52 CDT)
- Re: Large positive non-integer charge (Thu May 12 2011 - 13:56:44 CDT)
- Re: Atom ID/Color change with timesteps (Thu May 12 2011 - 13:54:23 CDT)
- Re: Atom ID/Color change with timesteps (Wed May 11 2011 - 19:58:38 CDT)
- Re: Slice through molecule (Wed May 11 2011 - 09:16:40 CDT)
- Re: changing the color of Sn atom (Wed May 11 2011 - 08:37:46 CDT)
- Re: save coordinate POSCAR (Tue May 10 2011 - 13:50:39 CDT)
- Re: save coordinate POSCAR (Tue May 10 2011 - 13:30:03 CDT)
- Re: bad window parameter (Tue May 10 2011 - 10:39:44 CDT)
- Re: Re: Calculating RMSD on two sets of points (Tue May 10 2011 - 10:43:51 CDT)
- Re: plotting spin density (Thu May 05 2011 - 22:45:20 CDT)
- Re: Cartoons and secondary structure prediction (Tue May 03 2011 - 07:05:39 CDT)
- Re: SASA calculation using periodic images? (Tue May 03 2011 - 07:10:56 CDT)
- Re: Reconstruction of XST data from DCD data (Sun May 01 2011 - 20:15:06 CDT)
- Re: psfgen: error processing bonds (Sun May 01 2011 - 16:20:45 CDT)
- Re: X & Y co-ordinate data (Sun May 01 2011 - 12:12:09 CDT)
- Re: question regarding H-bond calculation (Sun May 01 2011 - 11:32:09 CDT)
- Re: psfgen: error processing bonds (Sat Apr 30 2011 - 10:45:17 CDT)
- Re: Save molecule in pdb format (Sat Apr 30 2011 - 04:42:15 CDT)
- Re: psfgen: error processing bonds (Fri Apr 29 2011 - 15:11:54 CDT)
- Re: Questions about trajectory files obtained from LAMMPS Molecular dynamics with Reax Force field (Fri Apr 29 2011 - 08:36:01 CDT)
- Re: psfgen: error processing bonds (Fri Apr 29 2011 - 08:40:55 CDT)
- Re: hello (Thu Apr 28 2011 - 10:01:18 CDT)
- Re: running plugin from the command line (Wed Apr 27 2011 - 15:34:10 CDT)
- Re: making a movie (Tue Apr 26 2011 - 18:36:48 CDT)
- Re: generating .xsc files using periodic information (Tue Apr 26 2011 - 11:31:28 CDT)
- Re: Generating Topo Bond Data from LAMMPS Data File (Wed Apr 20 2011 - 11:17:34 CDT)
- Re: Simple Question regarding psf generation (Tue Apr 19 2011 - 09:24:57 CDT)
- Re: waters selection (Mon Apr 18 2011 - 16:20:51 CDT)
- Re: compiling on LINUXAMD64 problem (Sun Apr 17 2011 - 11:16:56 CDT)
- Re: compiling on LINUXAMD64 problem (Sun Apr 17 2011 - 08:51:28 CDT)
- Re: compiling on LINUXAMD64 problem (Sun Apr 17 2011 - 08:34:54 CDT)
- Re: compiling on LINUXAMD64 problem (Sun Apr 17 2011 - 08:16:45 CDT)
- Re: compiling on LINUXAMD64 problem (Sun Apr 17 2011 - 03:26:32 CDT)
- Re: Re: using vmd to view gromacs trajectory (Thu Apr 14 2011 - 11:43:36 CDT)
- Re: Tcl plugin development and debugging (Tue Apr 12 2011 - 12:05:24 CDT)
- Re: Tcl plugin development and debugging (Tue Apr 12 2011 - 11:38:34 CDT)
- Re: Tcl plugin development and debugging (Tue Apr 12 2011 - 10:38:19 CDT)
- Re: Tcl plugin development and debugging (Tue Apr 12 2011 - 10:56:17 CDT)
- Re: trajectory generation using gaussian cube files (Mon Apr 11 2011 - 16:47:48 CDT)
- Re: box vectores in .trr (Sat Apr 09 2011 - 15:17:23 CDT)
- Re: Water Models (Sat Apr 02 2011 - 05:34:38 CDT)
- Re: How to create bonds in VMD? (Fri Apr 01 2011 - 11:59:54 CDT)
- Re: viewing trajectory (Tue Mar 29 2011 - 19:32:41 CDT)
- Re: Save Coordinates Question ... (Fri Mar 25 2011 - 13:04:44 CDT)
- Re: measure dipole (Fri Mar 25 2011 - 09:14:47 CDT)
- Re: measure dipole (Thu Mar 24 2011 - 13:53:10 CDT)
- Re: How can I operate on multiple .pdb structures in a list (Wed Mar 23 2011 - 19:43:49 CDT)
- Re: ANALYZING DESMOND OUTPUT IN VMD (Sun Mar 20 2011 - 15:49:12 CDT)
- Re: "non-grid" volumetric data (Sat Mar 19 2011 - 17:53:16 CDT)
- Re: "non-grid" volumetric data (Sat Mar 19 2011 - 04:32:27 CDT)
- Re: Linkage problem when compiling fortran bindings for VMD molfile plugins (Fri Mar 18 2011 - 11:14:31 CDT)
- Re: MSD calculation from VMD RMSD plugin. (Wed Mar 16 2011 - 14:23:30 CDT)
- Re: pdb file with different number of molecules (Wed Mar 16 2011 - 13:20:42 CDT)
- Re: MSD calculation from VMD RMSD plugin. (Wed Mar 16 2011 - 10:54:41 CDT)
- Re: Linkage problem when compiling fortran bindings for VMD molfile plugins (Mon Mar 14 2011 - 18:08:53 CDT)
- Re: Linkage problem when compiling fortran bindings for VMD molfile plugins (Mon Mar 14 2011 - 13:43:28 CDT)
- Re: zero box vector (Sun Mar 13 2011 - 11:49:26 CDT)
- Re: zero box vector (Sat Mar 12 2011 - 05:20:48 CST)
- Re: tcl script (Fri Mar 11 2011 - 11:49:39 CST)
- Re: 2 Issues in VMD 1.9 beta3 (Fri Mar 11 2011 - 08:14:02 CST)
- Re: problem on making a movie (Fri Mar 11 2011 - 05:58:33 CST)
- Re: Not calculate bonds by default. (Thu Mar 10 2011 - 19:08:44 CST)
- Re: zero box vector (Thu Mar 10 2011 - 12:37:31 CST)
- Re: Triclinic boxes in VMD using the LAMMPS file format (Thu Mar 10 2011 - 09:44:13 CST)
- Re: Triclinic boxes in VMD using the LAMMPS file format (Thu Mar 10 2011 - 08:18:03 CST)
- Re: tcl script (Wed Mar 09 2011 - 09:41:31 CST)
- Re: Extra bond in TIP3 water (Wed Mar 09 2011 - 06:04:00 CST)
- Re: how to make default background color to white (Wed Mar 09 2011 - 04:31:00 CST)
- Re: ERROR (Wed Mar 09 2011 - 04:17:56 CST)
- Re: how to make default background color to white (Tue Mar 08 2011 - 10:45:40 CST)
- Re: measure energy elect vs. NAMDenergy (Tue Mar 08 2011 - 06:23:07 CST)
- Re: Android support (Sun Mar 06 2011 - 12:38:38 CST)
- Re: view temperature, forces and velocities (Sat Mar 05 2011 - 12:27:23 CST)
- Re: Error in coordinate information of PDB file after merging (Wed Mar 02 2011 - 10:39:01 CST)
- Re: VMD.RC Question (Tue Mar 01 2011 - 16:51:49 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins (Tue Mar 01 2011 - 12:33:03 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins (Tue Mar 01 2011 - 11:23:36 CST)
- Re: Pot.dx files (Sat Feb 26 2011 - 17:29:50 CST)
- Re: Pot.dx files (Sat Feb 26 2011 - 15:50:57 CST)
- Re: Server for structural models of the unfolded state of proteins (Fri Feb 25 2011 - 19:48:08 CST)
- Re: lindex related question (Fri Feb 25 2011 - 16:11:42 CST)
- Re: lindex related question (Fri Feb 25 2011 - 15:49:48 CST)
- Re: Adding bonds between many metal atoms (Fri Feb 25 2011 - 10:33:27 CST)
- Re: Using the MovieMaker (Thu Feb 24 2011 - 16:57:19 CST)
- Re: Incorrect results from 'measure dipole -masscenter' (Wed Feb 23 2011 - 09:12:37 CST)
- Re: how to write out the dcd file by vmd python command? (Tue Feb 22 2011 - 07:19:28 CST)
- Re: Drawing using variables (Mon Feb 21 2011 - 17:14:58 CST)
- Re: VMD Volmap ILS Error & Orient Function (Mon Feb 21 2011 - 15:17:52 CST)
- Re: memory leak 1.8.7 and 1.9b1 (Mon Feb 21 2011 - 10:10:41 CST)
- Re: ParaTool (Sun Feb 20 2011 - 12:25:46 CST)
- Re: atoms selection (Sun Feb 20 2011 - 12:18:56 CST)
- Re: VMD Volmap ILS Error & Orient Function (Sun Feb 20 2011 - 12:32:15 CST)
- Re: Application Error while use of Auto PSF Builder (Sun Feb 20 2011 - 09:42:19 CST)
- Re: scripts CGTools (Fri Feb 18 2011 - 07:25:44 CST)
- Re: VMD Volmap ILS Error & Orient Function (Thu Feb 17 2011 - 13:54:49 CST)
- Re: VMD 1.9 beta 1 posted for download... (Thu Feb 17 2011 - 10:15:08 CST)
- Re: Dynamically updating water colors for each frame of a trajectory (Wed Feb 16 2011 - 18:01:35 CST)
- Re: latest vmd (Sat Feb 12 2011 - 19:06:57 CST)
- Re: setting different bond length for different atom pair (Fri Feb 11 2011 - 13:00:56 CST)
- Re: multiple topology files and resetpsf (Tue Feb 08 2011 - 16:38:35 CST)
- Re: Displaying an overlay of multiple structures with VMD (Tue Feb 08 2011 - 16:28:23 CST)
- Re: VMD Volmap ILS Error (Tue Feb 08 2011 - 16:25:00 CST)
- Re: Multiseq in text mode (Mon Feb 07 2011 - 19:33:48 CST)
- Re: VMD Volmap ILS Error (Mon Feb 07 2011 - 19:25:54 CST)
- Re: graphical representations over a number of molecule files (Sun Feb 06 2011 - 15:43:12 CST)
- Re: Re: convert prmtop to psf (Wed Feb 02 2011 - 15:45:16 CST)
- Re: Re: convert prmtop to psf (Wed Feb 02 2011 - 09:26:32 CST)
- Re: Re: USING IED for essential dynamics in VMD (Tue Feb 01 2011 - 19:34:30 CST)
- Re: Re: convert prmtop to psf (Tue Feb 01 2011 - 17:41:31 CST)
- Re: water molecule count (Tue Feb 01 2011 - 11:33:34 CST)
- Re: How to use VMD script "PorcupinePlot.tcl" (Mon Jan 31 2011 - 11:59:50 CST)
- Re: CG Builder (Sun Jan 30 2011 - 08:54:59 CST)
- Re: CG Builder (Sun Jan 30 2011 - 05:53:54 CST)
- Re: Re: Trouble rendering tranparent atoms with Tachyon (Fri Jan 28 2011 - 09:56:06 CST)
- Re: illegal stereo mode (Fri Jan 28 2011 - 09:23:45 CST)
- Re: vrml2 output crashes VTK/Paraview (Thu Jan 27 2011 - 20:05:25 CST)
- RE: How can I add bonds ? (Thu Jan 27 2011 - 14:49:19 CST)
- Re: removing all water molecules (Thu Jan 27 2011 - 08:28:46 CST)
- Re: Slower FPS in dual monitor systems? (Thu Jan 27 2011 - 08:17:19 CST)
- Re: removing all water molecules (Thu Jan 27 2011 - 08:08:27 CST)
- Re: Question regarding g(r) utility (Wed Jan 26 2011 - 18:35:47 CST)
- Re: How can I add bonds ? (Wed Jan 26 2011 - 10:02:42 CST)
- Re: duplicate frames / slow down movie (Tue Jan 25 2011 - 08:55:42 CST)
- Re: Secondary Structure of alkane polymers (Mon Jan 24 2011 - 21:27:07 CST)
- Re: Secondary Structure of alkane polymers (Mon Jan 24 2011 - 16:42:43 CST)
- Re: How can I add bonds ? (Mon Jan 24 2011 - 09:58:19 CST)
- Re: Displaying Bead and Bonds (Wed Jan 19 2011 - 14:30:29 CST)
- Re: Where can I download VMD alpha version (Sat Jan 15 2011 - 10:45:14 CST)
- Re: volumetric trajectory (Fri Jan 14 2011 - 12:49:50 CST)
- Re: VTF trajectory from coarse grained ESPReSo simulations. Visualization in Windows. (Wed Jan 12 2011 - 11:40:12 CST)
- Re: namd energy plugin error: toplevel (Tue Jan 11 2011 - 09:22:22 CST)
- Re: volumetric trajectory (Mon Jan 10 2011 - 17:29:39 CST)
- Re: vmd with 3d vision (Fri Jan 07 2011 - 16:59:21 CST)
- Re: vmd with 3d vision (Fri Jan 07 2011 - 16:50:24 CST)
- Re: vmd with 3d vision (Fri Jan 07 2011 - 16:34:33 CST)
- Re: vmd with 3d vision (Fri Jan 07 2011 - 16:20:40 CST)
- Re: Binary request (Fri Jan 07 2011 - 08:15:18 CST)
- Re: Binary request (Fri Jan 07 2011 - 09:01:48 CST)
- Re: Re: How to show dynamic bonds? (Thu Jan 06 2011 - 08:27:52 CST)
- Re: orientation of protein molecule (Wed Jan 05 2011 - 19:17:55 CST)
- Re: VMD 1.8.7 and lammpsplugin.so error (Wed Jan 05 2011 - 16:48:16 CST)
- Re: How to show dynamic bonds? (Tue Jan 04 2011 - 09:28:39 CST)
- Re: (Mon Jan 03 2011 - 05:04:23 CST)
- Re: error in the conversion of dcd to pdb files (Mon Jan 03 2011 - 04:58:45 CST)
- Re: the IR spetra calculation module - from MD trajectory (Sat Jan 01 2011 - 16:09:04 CST)
- Re: error in the conversion of dcd to pdb files (Fri Dec 31 2010 - 04:54:08 CST)
- Re: Volmap Tool: Angular or spatial correlation function around a center molecule (Thu Dec 30 2010 - 14:53:56 CST)
- Re: MOE and NAMD (Thu Dec 30 2010 - 14:43:20 CST)
- Re: psfgen or autopsf (Sun Dec 26 2010 - 09:25:08 CST)
- Re: conversion of gromacs trajectory file (xtc) to amber trajectory file (mdcrd) (Sat Dec 25 2010 - 11:20:06 CST)
- Re: Bad Length and GLXBadLargeRequest errors (Thu Dec 23 2010 - 04:01:03 CST)
- Re: Installing vmd-1.8.7 on LINUXAMD64 (Tue Dec 21 2010 - 08:49:30 CST)
- Re: selection of amino acids with certain distance each others (Sun Dec 19 2010 - 13:59:02 CST)
- Re: xterm (Sat Dec 18 2010 - 04:42:42 CST)
- Re: Save Atom Selection to DCD (Thu Dec 16 2010 - 04:29:53 CST)
- Re: Rv: Re: Phonon spectrum and VACF (Tue Dec 14 2010 - 13:08:07 CST)
- Re: Adsorption and diffusion (Tue Dec 14 2010 - 04:21:44 CST)
- Re: how to measure some constants (Tue Dec 14 2010 - 04:13:41 CST)
- Re: load of information on B factor as independent file (Tue Dec 14 2010 - 02:33:54 CST)
- Re: HBONDS bug? (Tue Dec 14 2010 - 02:36:38 CST)
- Re: automatic PSF builder (Mon Dec 13 2010 - 04:03:50 CST)
- Re: color change on atoms selected using mouse (Thu Dec 09 2010 - 11:04:44 CST)
- Re: Plotting potential energy (Thu Dec 09 2010 - 05:27:57 CST)
- Re: Phonon spectrum and VACF (Thu Dec 09 2010 - 05:26:13 CST)
- Re: surface representation question (Thu Dec 09 2010 - 02:46:16 CST)
- Re: RE : Plot the value of the current frame in the Progress Bar for elapsed Time (Thu Dec 02 2010 - 13:44:37 CST)
- Re: Plot the value of the current frame in the Progress Bar for elapsed Time (Thu Dec 02 2010 - 10:47:31 CST)
- Re: generating lipid membrane psf file (Thu Dec 02 2010 - 10:39:53 CST)
- Re: Output of forces (Thu Dec 02 2010 - 04:29:05 CST)
- Re: VASP crystal structure visualisation (Fri Nov 26 2010 - 16:11:41 CST)
- Re: VASP crystal structure visualisation (Thu Nov 25 2010 - 17:10:04 CST)
- Re: how to display bond btw backbone atom and sidechain atom (Wed Nov 24 2010 - 06:07:32 CST)
- Re: Test Graphic card performance using VMD as benchmark (Fri Nov 19 2010 - 15:50:23 CST)
- Re: .xsf triclinic cell contents (Fri Nov 19 2010 - 14:49:31 CST)
- Re: rgyr calculation problem (Fri Nov 19 2010 - 13:35:45 CST)
- Re: tcl script problem using -dispdev text .. (Fri Nov 19 2010 - 06:27:46 CST)
- Re: radial distribution function from the center of mass (Thu Nov 18 2010 - 20:27:55 CST)
- Re: radial distribution function from the center of mass (Thu Nov 18 2010 - 20:20:18 CST)
- Re: .xsf triclinic cell contents (Thu Nov 18 2010 - 15:41:28 CST)
- Re: does vmd allow change in volume (Thu Nov 18 2010 - 14:34:29 CST)
- Re: tcl script problem using -dispdev text .. (Thu Nov 18 2010 - 08:28:41 CST)
- Re: missing operator at _@_in expression "$i _@_$n" (Wed Nov 17 2010 - 10:39:07 CST)
- Re: atom selection in vmd (Wed Nov 17 2010 - 09:56:35 CST)
- Re: Rendering .dat files created from Movie Maker using Tachyon (Tue Nov 16 2010 - 10:43:38 CST)
- Re: Headtracking software (Tue Nov 16 2010 - 10:48:32 CST)
- Re: question on color assignment on trajectories (Mon Nov 15 2010 - 22:06:45 CST)
- Re: Water molecules within a definite radius (Mon Nov 15 2010 - 18:34:23 CST)
- Re: Background gradient in image (Mon Nov 15 2010 - 16:48:25 CST)
- Re: Water molecules within a definite radius (Mon Nov 15 2010 - 16:22:49 CST)
- Interactive MD driver/controller software no longer in beta (Fri Nov 12 2010 - 09:41:59 CST)
- Re: rgyr calculation problem (Wed Nov 10 2010 - 12:40:40 CST)
- Re: rgyr calculation problem (Wed Nov 10 2010 - 11:12:06 CST)
- Re: dynamic atom selection (Tue Nov 09 2010 - 11:06:31 CST)
- RE: Graphics card for VMD, number of atoms, file format (Tue Nov 09 2010 - 10:51:32 CST)
- Re: dynamic atom selection (Tue Nov 09 2010 - 08:10:49 CST)
- Re: 3D protein visualization (Mon Nov 08 2010 - 13:22:50 CST)
- Re: Graphics card for VMD, number of atoms, file format (Mon Nov 08 2010 - 12:38:46 CST)
- Re: regarding merging of protein and a ligand (Sat Nov 06 2010 - 16:54:53 CDT)
- Re: rgyr calculation problem (Fri Nov 05 2010 - 17:09:31 CDT)
- Re: VMD text mode/unwrap (Tue Nov 02 2010 - 08:43:42 CDT)
- Re: psf format (Sun Oct 31 2010 - 13:54:12 CDT)
- Re: Contour plots for XYZ format (Sat Oct 30 2010 - 19:17:46 CDT)
- Re: Contour plots for XYZ format (Sat Oct 30 2010 - 10:56:04 CDT)
- Re: menus unresponsive in ubuntu 10.10 (Sat Oct 30 2010 - 10:58:17 CDT)
- Re: Where to download Hbond plugin (Sat Oct 30 2010 - 11:01:01 CDT)
- Re: Reading MatStudio/ LAMMPS structures to VMD (Fri Oct 29 2010 - 11:37:11 CDT)
- Re: Possible bug in freeing global selections (Thu Oct 28 2010 - 13:11:30 CDT)
- Re: Possible bug in freeing global selections (Thu Oct 28 2010 - 09:22:13 CDT)
- Re: Reading MatStudio/ LAMMPS structures to VMD (Tue Oct 26 2010 - 09:43:48 CDT)
- Re: Reading MatStudio/ LAMMPS structures to VMD (Sun Oct 24 2010 - 17:02:38 CDT)
- Re: problem at convert single trajectory frame to pdb (Tue Oct 19 2010 - 22:04:44 CDT)
- Re: problem at convert single trajectory frame to pdb (Tue Oct 19 2010 - 12:53:31 CDT)
- Re: Vega ZZ DCD trajectory crashes VMD (Tue Oct 19 2010 - 11:02:34 CDT)
- Re: Novint Falcon (Tue Oct 19 2010 - 08:19:49 CDT)
- Re: Best way for model post processing? (Mon Oct 18 2010 - 12:11:55 CDT)
- Re: psf format (Sun Oct 17 2010 - 13:36:34 CDT)
- Re: Memory leak with "mol modselect" and index (Sun Oct 17 2010 - 13:29:22 CDT)
- Re: Bond Colors (Thu Oct 14 2010 - 11:58:09 CDT)
- Re: Bond Colors (Wed Oct 13 2010 - 12:38:18 CDT)
- Re: Bond Colors (Wed Oct 13 2010 - 09:41:00 CDT)
- Re: IED 2.02 and VMD 1.8.7 (Wed Oct 13 2010 - 09:23:19 CDT)
- Re: How to stop a script (eg : source myscript.tcl) ? (Mon Oct 11 2010 - 09:23:14 CDT)
- Re: trouble with measure hbonds (Mon Oct 04 2010 - 16:02:13 CDT)
- Re: IR Spectra plugin (Wed Sep 29 2010 - 12:03:13 CDT)
- Re: missing atoms (Mon Sep 27 2010 - 10:29:25 CDT)
- Re: protein breaks into parts after converting trajectory file to pdb file (Mon Sep 27 2010 - 10:32:58 CDT)
- Re: ppmtompeg (Wed Sep 22 2010 - 10:54:35 CDT)
- Re: vmd_pdb file format (Fri Sep 17 2010 - 12:35:27 CDT)
- Re: maximum trajectory size? (Thu Sep 16 2010 - 16:12:11 CDT)
- Re: compile vmd (Wed Sep 15 2010 - 13:09:28 CDT)
- Re: Draw a box cell for a crystal (Wed Sep 15 2010 - 08:15:50 CDT)
- Re: compile windows binary in linux (Mon Sep 13 2010 - 15:13:13 CDT)
- Re: Visualization problem with aromatic bromo atom? (Sun Sep 12 2010 - 14:59:54 CDT)
- (no subject) (Sun Sep 12 2010 - 12:33:25 CDT)
- Re: Hydrogen bond angle (Fri Aug 27 2010 - 09:41:22 CDT)
- Re: DCD Based on a parameter (Thu Aug 26 2010 - 11:11:07 CDT)
- Re: converting old LAMMPS ASCII dumps (Tue Aug 24 2010 - 09:48:26 CDT)
- Re: Structure won't move after loading trajectory (Mon Aug 23 2010 - 20:39:30 CDT)
- Re: converting old LAMMPS ASCII dumps (Mon Aug 23 2010 - 20:04:32 CDT)
- Re: OSX 10.6 support? (Mon Aug 23 2010 - 17:28:21 CDT)
- Re: RMSF calculation: residue wise (Fri Aug 20 2010 - 12:13:21 CDT)
- Re: VMD plus Phantom (Wed Aug 18 2010 - 14:13:53 CDT)
- Re: tcl script (Wed Aug 18 2010 - 04:01:00 CDT)
- Re: RSMD of coarse grained molecules (Mon Aug 16 2010 - 22:21:50 CDT)
- Re: VMD 3D movies rendering (Mon Aug 16 2010 - 08:40:36 CDT)
- Re: where can I download Tachyon version 0.98.10 ? (Sun Aug 15 2010 - 04:28:42 CDT)
- Re: where can I download Tachyon version 0.98.10 ? (Sat Aug 14 2010 - 08:19:12 CDT)
- Re: cant connect Novint Falcon with VMD (Fri Aug 13 2010 - 14:30:28 CDT)
- Re: VMD questions about animating residue distance lines and contact maps (Fri Aug 13 2010 - 11:12:55 CDT)
- Re: cant connect Novint Falcon with VMD (Fri Aug 13 2010 - 00:03:51 CDT)
- Re: About Atom Index Order (Thu Aug 12 2010 - 18:20:52 CDT)
- Re: cant connect Novint Falcon with VMD (Thu Aug 12 2010 - 14:22:13 CDT)
- Re: cant connect Novint Falcon with VMD (Thu Aug 12 2010 - 14:37:14 CDT)
- Re: About Atom Index Order (Thu Aug 12 2010 - 04:52:38 CDT)
- Re: About Atom Index Order (Wed Aug 11 2010 - 22:01:11 CDT)
- Re: Problem Material Studio/VMD (Wed Aug 11 2010 - 04:26:56 CDT)
- Re: Solvate plug-in (Tue Aug 10 2010 - 23:28:11 CDT)
- Re: Writing Python Plugins properly (Tue Aug 10 2010 - 21:38:07 CDT)
- Re: Superimpose protein - plot water position - visualize water pathway (Sat Aug 07 2010 - 20:42:05 CDT)
- Re: NAMD energy plugin (Thu Aug 05 2010 - 08:53:18 CDT)
- Re: povray rendering help (Fri Jul 30 2010 - 08:41:35 CDT)
- Re: "can not find channel named ... (Wed Jul 28 2010 - 06:55:13 CDT)
- Re: PC suitable for visualisation of large systems, maximum namuber of atoms in a .pdb file (Wed Jul 21 2010 - 09:09:19 CDT)
- Re: PC suitable for visualisation of large systems, maximum namuber of atoms in a .pdb file (Wed Jul 21 2010 - 08:11:34 CDT)
- Re: trajectory sort by RMSD or other (Tue Jul 20 2010 - 17:17:33 CDT)
- Re: trajectory sort by RMSD or other (Tue Jul 20 2010 - 13:04:57 CDT)
- Re: Adding other online PDB data bases to VMD (Fri Jul 16 2010 - 19:58:22 CDT)
- Re: making a movie of an unusual trajectory (Fri Jul 16 2010 - 13:05:49 CDT)
- Re: making a movie of an unusual trajectory (Fri Jul 16 2010 - 12:47:26 CDT)
- Re: Graphics Representation - Drawing methods (Tue Jul 13 2010 - 18:08:18 CDT)
- Re: VMD cuda (Mon Jul 12 2010 - 16:50:26 CDT)
- Re: Autoionize does not neutralize the system (Tue Jul 06 2010 - 16:01:03 CDT)
- Re: Autoionize does not neutralize the system (Tue Jul 06 2010 - 09:49:19 CDT)
- Re: color charmm dcd by kinetic energy (Mon Jul 05 2010 - 17:02:53 CDT)
- Re: contact map (Mon Jul 05 2010 - 11:47:31 CDT)
- Re: Conversion of DCD trajectories to AMBER ones ? (Mon Jul 05 2010 - 05:54:16 CDT)
- Re: Re: convert prmtop to psf (Tue Jun 22 2010 - 14:01:36 CDT)
- Re: OpenGL Display slow/freeze (Tue Jun 22 2010 - 08:45:15 CDT)
- Re: vmd on Microsoft 2000 and Phantom (Tue Jun 22 2010 - 08:48:53 CDT)
- Re: OpenGL Display slow/freeze (Mon Jun 21 2010 - 22:52:13 CDT)
- Re: Re: convert prmtop to psf (Mon Jun 21 2010 - 17:25:22 CDT)
- Re: structure file for big molecules (Sun Jun 20 2010 - 18:55:39 CDT)
- Re: namdenergy: writepdb failed (Sun Jun 20 2010 - 08:25:03 CDT)
- Re: Hydrophobic interaction (Fri Jun 18 2010 - 08:10:23 CDT)
- Re: Hydrophobic interaction (Fri Jun 18 2010 - 08:25:36 CDT)
- Re: visualize trajectories from lammps parallel results (Thu Jun 17 2010 - 15:34:31 CDT)
- Re: Color by velocity (speed?) (Wed Jun 16 2010 - 13:01:21 CDT)
- Re: particular set of xyz coordinates in PDB causes seg fault (Tue Jun 15 2010 - 15:02:45 CDT)
- Re: particular set of xyz coordinates in PDB causes seg fault (Tue Jun 15 2010 - 12:56:50 CDT)
- Re: topotools (Tue Jun 15 2010 - 12:00:00 CDT)
- Re: topotools (Tue Jun 15 2010 - 11:31:40 CDT)
- Re: top2psf.tcl (Tue Jun 15 2010 - 10:31:42 CDT)
- Re: top2psf.tcl (Tue Jun 15 2010 - 08:59:42 CDT)
- Re: top2psf.tcl (Tue Jun 15 2010 - 08:29:32 CDT)
- Re: top2psf.tcl (Sun Jun 13 2010 - 07:19:12 CDT)
- Re: Problems with Linux install... (Wed Jun 09 2010 - 21:26:53 CDT)
- Re: Rending to png format using tachyon or otherwise ? (Wed Jun 09 2010 - 13:08:57 CDT)
- Re: topotools and Partial charges (Wed Jun 09 2010 - 11:49:55 CDT)
- Re: about vmd solvation plugin (Wed Jun 09 2010 - 07:11:11 CDT)
- Re: about vmd solvation plugin (Sat Jun 05 2010 - 19:32:54 CDT)
- Re: Re: Problems with Linux install... (Fri Jun 04 2010 - 14:18:40 CDT)
- Re: Trouble compiling from source - Mac OS X (Fri Jun 04 2010 - 13:11:08 CDT)
- Re: about ".cpmd" format (Fri Jun 04 2010 - 00:50:48 CDT)
- Re: about paratool (Thu Jun 03 2010 - 04:59:08 CDT)
- Re: Interaction Energy (Wed Jun 02 2010 - 17:00:48 CDT)
- Re: Visualize intersection of overlapping spheres? (Wed Jun 02 2010 - 13:46:02 CDT)
- Re: Compiling without graphics (Tue Jun 01 2010 - 21:55:58 CDT)
- Re: RMSD Trajectory Tool (Tue Jun 01 2010 - 22:02:36 CDT)
- Re: RDF and Coordination Number (Fri May 28 2010 - 08:52:10 CDT)
- Re: Modelling program that does hydrogen adjust (Fri May 28 2010 - 08:30:34 CDT)
- Re: Residue Number Assignment by VMD (Fri May 28 2010 - 08:24:45 CDT)
- Re: radial distribution function problem (Wed May 26 2010 - 11:26:30 CDT)
- Re: monomer transposes boundary box (Tue May 25 2010 - 08:29:22 CDT)
- Re: monomer transposes boundary box (Tue May 25 2010 - 08:16:51 CDT)
- Re: monomer transposes boundary box (Tue May 25 2010 - 08:35:22 CDT)
- Re: Tachyon 0.9.10 and recommende version of cuda? (Mon May 24 2010 - 07:45:24 CDT)
- Re: LAMMPS Trajectory (Sun May 23 2010 - 17:24:08 CDT)
- Re: Atom Selection for RDF (Sat May 22 2010 - 12:46:48 CDT)
- Re: Atom Selection for RDF (Sat May 22 2010 - 10:25:06 CDT)
- Re: Frames-Movie (Wed May 19 2010 - 14:39:12 CDT)
- Re: Cutting a bond (Wed May 19 2010 - 14:33:01 CDT)
- Re: Adding an atom to the existing pdb (Wed May 19 2010 - 06:36:59 CDT)
- Re: compile error (Tue May 18 2010 - 06:27:22 CDT)
- Re: Radial distribution function: "y" axis (Mon May 17 2010 - 17:13:23 CDT)
- Re: Radial distribution function: "y" axis (Sun May 16 2010 - 14:01:26 CDT)
- Re: append pdb (Sun May 16 2010 - 11:00:52 CDT)
- Re: Xrequest in VMD (Wed May 12 2010 - 06:44:02 CDT)
- Re: Selecting CUDA devices in VMD 1.8.7 (Tue May 11 2010 - 20:08:25 CDT)
- Re: Selecting CUDA devices in VMD 1.8.7 (Tue May 11 2010 - 19:19:21 CDT)
- Re: units of "measure dipole" (Tue May 11 2010 - 16:23:51 CDT)
- Re: units of "measure dipole" (Tue May 11 2010 - 15:53:29 CDT)
- Re: units of "measure dipole" (Tue May 11 2010 - 15:29:59 CDT)
- Re: namd-l: Atom movement within a range of Z value (Tue May 11 2010 - 15:27:44 CDT)
- Re: LAMMPS trajectory file (Mon May 10 2010 - 23:25:23 CDT)
- Re: Creating AVI movies (Mon May 10 2010 - 08:21:13 CDT)
- Re: Stereoscopic visualization (Sun May 09 2010 - 14:12:14 CDT)
- Re: Stereoscopic visualization (Sun May 09 2010 - 11:58:13 CDT)
- Re: adding atomselections? (Sat May 08 2010 - 19:34:30 CDT)
- Re: selecting from different molecules simultaneously (Thu May 06 2010 - 19:55:33 CDT)
- Re: G(r) tcl script not including intramolecular correlations (Thu May 06 2010 - 19:46:26 CDT)
- Re: selecting from different molecules simultaneously (Wed May 05 2010 - 21:39:54 CDT)
- Re: animation with variable number/names of atoms (Tue May 04 2010 - 07:40:37 CDT)
- Re: animation with variable number/names of atoms (Mon May 03 2010 - 16:47:05 CDT)
- Re: ellipsoidal particles (Sun May 02 2010 - 15:08:54 CDT)
- Re: choice of VDW radius (Fri Apr 30 2010 - 08:34:36 CDT)
- Re: paratools charmm partial charges (Fri Apr 30 2010 - 08:38:27 CDT)
- Re: Paratools Question (Wed Apr 28 2010 - 23:47:45 CDT)
- Re: topotools (Wed Apr 28 2010 - 15:30:47 CDT)
- Re: topotools (Wed Apr 28 2010 - 10:37:36 CDT)
- Re: topotools (Wed Apr 28 2010 - 04:46:11 CDT)
- Re: Is nvidia 3D Vision + quadro working in linux (Tue Apr 27 2010 - 18:20:38 CDT)
- Re: Run Python Scripts in VMD on Mac OS X (Tue Apr 27 2010 - 08:38:32 CDT)
- Re: representation question (Mon Apr 26 2010 - 15:09:17 CDT)
- Re: Conversion of GAMESS Quantum MD trajectory file (Mon Apr 26 2010 - 15:01:16 CDT)
- VRPN driver for Novint Falcon haptic device available - Looking for Testers (Fri Apr 23 2010 - 15:59:34 CDT)
- Re: Coloring atoms based on timeframe range? (Thu Apr 22 2010 - 10:11:05 CDT)
- Re: vmd does not read pqr file correct, vmd parse chain information incorrect. (Tue Apr 20 2010 - 19:18:09 CDT)
- Re: Problem with vmd and pqr file (Sun Apr 18 2010 - 18:50:33 CDT)
- Re: Problem with vmd and pqr file (Sun Apr 18 2010 - 11:14:01 CDT)
- Re: Colouring atoms named with the same first letter (Fri Apr 16 2010 - 12:03:24 CDT)
- Re: recognizing TCL variables in a matrix argument (Thu Apr 15 2010 - 19:45:15 CDT)
- Re: how to download & install QMTool plugin (Wed Apr 14 2010 - 10:42:52 CDT)
- Re: calculate side-chain dihedral/torsion angles (Mon Apr 12 2010 - 08:58:28 CDT)
- Re: calculate side-chain dihedral/torsion angles (Mon Apr 12 2010 - 08:08:08 CDT)
- Re: calculate side-chain dihedral/torsion angles (Mon Apr 12 2010 - 05:43:37 CDT)
- Re: DynamicBonding (Fri Apr 09 2010 - 15:43:03 CDT)
- Re: DynamicBonding (Fri Apr 09 2010 - 15:23:38 CDT)
- Re: Turn off initial VMD animation and "menu tkcon on" problem (Fri Apr 09 2010 - 08:37:36 CDT)
- Re: build dependency (Fri Apr 09 2010 - 04:37:59 CDT)
- Re: question about vmd use (Fri Apr 09 2010 - 04:42:49 CDT)
- Re: center of unit cell (Thu Apr 08 2010 - 11:13:45 CDT)
- Re: Way to change ColorScale Method to single color gradient? (Wed Apr 07 2010 - 08:43:19 CDT)
- Re: Way to change ColorScale Method to single color gradient? (Wed Apr 07 2010 - 06:08:23 CDT)
- Re: Generating nanotubes psf file (Mon Apr 05 2010 - 16:05:34 CDT)
- Re: Generating nanotubes psf file (Mon Apr 05 2010 - 14:30:21 CDT)
- Re: Generating nanotubes psf file (Mon Apr 05 2010 - 11:56:07 CDT)
- Re: Generating nanotubes psf file (Mon Apr 05 2010 - 09:52:55 CDT)
- Re: [Help] cross-sections (Sun Apr 04 2010 - 05:27:44 CDT)
- Re: Creating length dependent coloured bonds in VMD (Tue Mar 30 2010 - 15:12:28 CDT)
- Re: problem with ied and vmd,ImportError: liblapack.so.3: cannot open shared object file: No such file or directory (Thu Mar 25 2010 - 10:49:09 CDT)
- Re: problem with ied and vmd,ImportError: liblapack.so.3: cannot open shared object file: No such file or directory (Thu Mar 25 2010 - 06:01:48 CDT)
- Re: Visualisation of VTF trajectories using VMD under Windows ? (Wed Mar 24 2010 - 12:04:45 CDT)
- Re: implicit solvent (Tue Mar 23 2010 - 12:00:04 CDT)
- Re: writepdb using selection form different molecules (Mon Mar 22 2010 - 13:16:43 CDT)
- Re: Running IMD interactivelly under the shell (Thu Mar 18 2010 - 17:56:52 CDT)
- Re: Running IMD interactivelly under the shell (Thu Mar 18 2010 - 16:54:42 CDT)
- Re: was: Selecting Cl- Na; now: redefining key words in VMD (Wed Mar 17 2010 - 17:20:02 CDT)
- Re: CGenFF atom types (Sun Mar 14 2010 - 21:19:30 CDT)
- Re: running ILS under Windows 7 (Sun Mar 14 2010 - 14:11:16 CDT)
- Re: Fwd: trajectory_path.tcl queries (Sun Mar 14 2010 - 10:10:02 CDT)
- Re: Topotools1.0 (Sat Mar 13 2010 - 14:03:22 CST)
- Re: Patch for Three or More monomers (Fri Mar 12 2010 - 11:32:10 CST)
- Re: water molecules around proteins (Fri Mar 12 2010 - 09:20:07 CST)
- Re: MergeStructs Plugin in text mode (Fri Mar 12 2010 - 09:11:24 CST)
- Re: water molecules around proteins (Thu Mar 11 2010 - 11:51:01 CST)
- Re: water molecules around proteins (Wed Mar 10 2010 - 17:41:03 CST)
- Re: Problems with "animate next" inside for-loops (Wed Mar 10 2010 - 17:23:04 CST)
- Re: MergeStructs Plugin in text mode (Wed Mar 10 2010 - 07:57:38 CST)
- Re: Isosurface wraps in PME Electrostatics calc'n (Tue Mar 09 2010 - 14:59:13 CST)
- Re: MergeStructs Plugin in text mode (Tue Mar 09 2010 - 13:24:49 CST)
- Re: analyzing gromacs trajectory (.trr) with VMD (Tue Mar 09 2010 - 04:47:13 CST)
- Re: trajectory_path.tcl queries (Sun Mar 07 2010 - 10:53:39 CST)
- Re: CUDA issues (Thu Mar 04 2010 - 13:16:58 CST)
- Re: Problem with New cartoon representation (Mon Mar 01 2010 - 03:33:05 CST)
- Re: Rotating user-defined graphics? (Fri Feb 26 2010 - 13:24:30 CST)
- Re: about command measure dipole (Wed Feb 24 2010 - 13:22:51 CST)
- Re: a problem in visualizing dump files with vmd (Tue Feb 23 2010 - 05:44:27 CST)
- Re: Numeric Library of Python for VMD 1.8.7 (Wed Feb 17 2010 - 23:36:39 CST)
- Re: slowing down movie maker (Wed Feb 17 2010 - 21:24:14 CST)
- Re: get view direction (Tue Feb 16 2010 - 06:21:23 CST)
- Re: xyz file and VASP CHGCAR file do not overlap (Mon Feb 15 2010 - 11:22:28 CST)
- Re: running namd2 on Mac PPC cluster (Sun Feb 14 2010 - 15:16:22 CST)
- Re: top_all22_prot.inp & par_all22_prot.inp (Sun Feb 14 2010 - 13:06:20 CST)
- Re: Retrieving an atom and its coordinates (Sat Feb 13 2010 - 17:20:59 CST)
- Re: psfgen generates 0 atom .psf file (Fri Feb 12 2010 - 22:52:25 CST)
- Re: xyz file and VASP CHGCAR file do not overlap (Fri Feb 12 2010 - 15:00:45 CST)
- Re: RMSD trajectory tools (Fri Feb 12 2010 - 07:20:42 CST)
- Re: Boolean operators and the new atomsel type (Wed Feb 10 2010 - 14:35:37 CST)
- RE: Blank thumbnails and non-working snapshots (Tue Feb 09 2010 - 08:24:14 CST)
- Re: Blank thumbnails and non-working snapshots (Mon Feb 08 2010 - 11:47:35 CST)
- Re: problem with generating PSF file for guanine based molecule (Sun Feb 07 2010 - 14:05:19 CST)
- Re: molecular dipole moment (Thu Feb 04 2010 - 05:11:59 CST)
- Re: VMD script: save coordinates problem (Mon Feb 01 2010 - 21:10:15 CST)
- Re: running LAMMPS output via VMD (Mon Feb 01 2010 - 07:37:44 CST)
- Re: Number of H bond formation in VMD (Fri Jan 29 2010 - 09:18:32 CST)
- Re: About Paratool (Wed Jan 27 2010 - 04:48:11 CST)
- Re: Number of Hydrogen Bonds among Water an Protein (Tue Jan 26 2010 - 15:39:18 CST)
- Re: VMD version 1.8.7 (LINUX OpenGL, CUDA) on UBUNTU 9.10 (Mon Jan 25 2010 - 16:08:58 CST)
- Re: Number of Hydrogen Bonds among Water an Protein (Mon Jan 25 2010 - 08:55:05 CST)
- Re: Graphics card for molecular graphics (Sun Jan 24 2010 - 13:09:26 CST)
- Re: bad text display in tk console (ubuntu 8.04 VMD 1.8.7 linux 32 bit) (Wed Jan 20 2010 - 11:42:57 CST)
- Re: How to display real time when reading trr file? (Wed Jan 20 2010 - 05:06:06 CST)
- Re: masure distance trajectory - delete variable (Sun Jan 17 2010 - 11:54:03 CST)
- Re: Topotools plugin: guessimpropers? (Fri Jan 15 2010 - 22:36:14 CST)
- Re: Topotools plugin: guessimpropers? (Fri Jan 15 2010 - 18:12:12 CST)
- Re: bad text display in tk console (ubuntu 8.04 VMD 1.8.7 linux 32 bit) (Fri Jan 15 2010 - 12:11:21 CST)
- Re: Topotools plugin: guessimpropers? (Fri Jan 15 2010 - 09:10:27 CST)
- Re: labeling bonds between two atoms (Thu Jan 14 2010 - 17:17:35 CST)
- Re: Topotools plugin: guessimpropers? (Wed Jan 13 2010 - 11:08:36 CST)
- Re: Topotools plugin: guessimpropers? (Wed Jan 13 2010 - 09:19:16 CST)
- Re: HOOMD plugin (Tue Jan 12 2010 - 13:11:32 CST)
- Re: PME isosurface not superimposed on protein (Mon Jan 11 2010 - 16:59:59 CST)
- Re: vmd installation in linux (Fri Jan 08 2010 - 10:35:48 CST)
- Re: vmd installation in linux (Fri Jan 08 2010 - 08:27:06 CST)
- Re: allowing negative 'resid' numbers in selection strings (Fri Jan 08 2010 - 08:49:01 CST)
- Re: VMD lammps plugin: a possible bug (Fri Jan 08 2010 - 08:19:15 CST)
- Re: vmd 1.8.7 getting the terminal free (Fri Jan 08 2010 - 08:03:21 CST)
- Re: vmd 1.8.7 getting the terminal free (Fri Jan 08 2010 - 06:26:43 CST)
- Re: vmd 1.8.7 getting the terminal free (Fri Jan 08 2010 - 06:25:40 CST)
- Re: VMD lammps plugin: a possible bug (Thu Jan 07 2010 - 12:03:23 CST)
- Re: VMD hangs up with a file size ~ 1.2 GB ? (Thu Jan 07 2010 - 06:04:14 CST)
- Re: VMD hangs up with a file size ~ 1.2 GB ? (Thu Jan 07 2010 - 05:55:29 CST)
- Re: VMD hangs up with a file size ~ 1.2 GB ? (Wed Jan 06 2010 - 22:22:56 CST)
- Re: VMD hangs up with a file size ~ 1.2 GB ? (Wed Jan 06 2010 - 10:48:28 CST)
- Re: VMD hangs up with a file size ~ 1.2 GB ? (Wed Jan 06 2010 - 07:41:05 CST)
- Re: (Tue Jan 05 2010 - 08:12:16 CST)
- Re: vmd installation in linux (Sun Jan 03 2010 - 05:23:58 CST)
- Re: Re: Re: Re: Superposition of Multiple Trajectory Timesteps (Sat Jan 02 2010 - 16:24:07 CST)
- Re: About the criterion of H bond (Sat Jan 02 2010 - 03:33:38 CST)
- Re: Re: Re: Superposition of Multiple Trajectory Timesteps (Fri Jan 01 2010 - 10:16:38 CST)
- Re: Re: Superposition of Multiple Trajectory Timesteps (Thu Dec 31 2009 - 10:57:08 CST)
- Re: Superposition of Multiple Trajectory Timesteps (Thu Dec 31 2009 - 08:08:03 CST)
- Re: IMD in VMD (Wed Dec 30 2009 - 00:58:00 CST)
- Re: UNIT CELL (Tue Dec 29 2009 - 10:37:59 CST)
- Re: vmd 1.8.7 - console window fullscreen (Fri Dec 25 2009 - 02:23:27 CST)
- Re: installation problem (Wed Dec 23 2009 - 14:30:56 CST)
- Re: installation problem (Wed Dec 23 2009 - 02:14:47 CST)
- Re: rdf curve (Tue Dec 22 2009 - 09:08:20 CST)
- Re: superimposed structure (Sun Dec 20 2009 - 09:55:04 CST)
- Re: pbc wrap center on protein (Sat Dec 19 2009 - 14:45:59 CST)
- Re: Graphics card for VMD (Tue Dec 15 2009 - 12:26:08 CST)
- Re: superimposed structure (Tue Dec 15 2009 - 09:34:12 CST)
- Re: hbonds.tcl selection problem in command-line (Tue Dec 15 2009 - 06:17:46 CST)
- Re: Counting number of water molecules (Wed Dec 09 2009 - 17:32:07 CST)
- Re: Re: vmd 1.8.7 on Intel 64 bit: segmentation fault (Tue Dec 08 2009 - 16:53:15 CST)
- Re: Broken bonds in trajectory due to pbc (Tue Dec 08 2009 - 16:32:01 CST)
- Re: building VMD is tricky -please help (Tue Dec 01 2009 - 18:31:54 CST)
- Re: Cant start IED (Tue Dec 01 2009 - 07:26:44 CST)
- Re: coloring by difference in beta factors (Tue Dec 01 2009 - 07:30:43 CST)
- Re: Polyhedra with two selections? (Mon Nov 30 2009 - 05:10:54 CST)
- Re: Color by position behavior (Sun Nov 29 2009 - 03:47:08 CST)
- Re: problems with CG protein-lipidbilayer-water system (Sat Nov 21 2009 - 16:54:04 CST)
- Re: aquire coordinates from the points of the solvent representation (Fri Nov 20 2009 - 13:23:11 CST)
- Re: solvate error (Thu Nov 19 2009 - 12:29:08 CST)
- Re: xzy format and ResType (Tue Nov 17 2009 - 14:40:46 CST)
- Re: polymer bead spring model file format (Tue Nov 17 2009 - 12:40:49 CST)
- Re: PBCTools-problem getting unitcell parameters (Thu Nov 12 2009 - 20:25:30 CST)
- Re: problems displaying newcartoon representation (Thu Nov 12 2009 - 12:09:16 CST)
- Re: bad_alloc error (Wed Nov 11 2009 - 10:43:34 CST)
- plugin for reading (and writing) trajectories with a varying number of atoms (Fri Nov 06 2009 - 14:51:02 CST)
- Re: running under Shell using VMD (Tue Nov 03 2009 - 21:43:33 CST)
- Re: RBCG bead diameter (Sat Oct 31 2009 - 14:42:05 CDT)
- Re: using NAMD with SPC water (Sat Oct 31 2009 - 14:23:13 CDT)
- Re: namd-l: abnormal water surface after nvt and npt for POPC membrane (Wed Oct 28 2009 - 10:55:16 CDT)
- Re: Unable to find Stride output file: /usr/tmp/... (Tue Oct 27 2009 - 13:18:17 CDT)
- Re: Tachyon Rendering (Tue Oct 27 2009 - 11:23:48 CDT)
- Re: using NAMD with SPC water (Mon Oct 26 2009 - 10:42:13 CDT)
- Re: using NAMD with SPC water (Mon Oct 26 2009 - 10:08:08 CDT)
- Re: using NAMD with SPC water (Mon Oct 26 2009 - 08:48:24 CDT)
- Re: VMD and Intel X3100 GPU (Sat Oct 24 2009 - 17:28:33 CDT)
- Re: Input File Format (Wed Oct 21 2009 - 14:52:05 CDT)
- Re: bond connectivity not displayed in VMD (Wed Oct 21 2009 - 12:58:15 CDT)
- Re: questions (Wed Oct 21 2009 - 13:03:57 CDT)
- Re: Atom sorting according to resid (Wed Oct 21 2009 - 11:21:58 CDT)
- Re: Translating an atom along a specific direction and saving the pdb files (Tue Oct 20 2009 - 10:38:17 CDT)
- Re: X server is not capable of displaying double RGB images with a Z buffer (Tue Oct 20 2009 - 10:40:59 CDT)
- Re: NAMD can't malloc() error (Mon Oct 19 2009 - 13:29:20 CDT)
- Re: Arbitrary values of isosurface (Mon Oct 19 2009 - 08:58:17 CDT)
- Re: paratool: unable to load optimized geometry (Mon Oct 19 2009 - 08:51:46 CDT)
- Re: Calculate Free Volume? (Mon Oct 19 2009 - 08:59:32 CDT)
- Re: Re: Water Sphere Solvation (Sun Oct 18 2009 - 09:25:30 CDT)
- Re: Question about running tcl/tk script without graphic interface (vmd option -dispdev none ...) (Fri Oct 16 2009 - 18:25:07 CDT)
- Re: Problems with selecting atoms for representations (Tue Oct 13 2009 - 11:29:09 CDT)
- Re: writing gromacs .trr format with nonorthorhomic cells (Tue Oct 13 2009 - 08:59:59 CDT)
- Re: colour residues (Mon Oct 12 2009 - 19:05:13 CDT)
- Re: covalently bonded atoms (Mon Oct 12 2009 - 12:41:31 CDT)
- Re: format of pdb file (Mon Oct 12 2009 - 10:10:06 CDT)
- Re: catdcd (Mon Oct 12 2009 - 10:43:42 CDT)
- Re: Load struture form memory (Mon Oct 12 2009 - 08:35:22 CDT)
- Re: Lipid Membrane (Mon Oct 12 2009 - 08:39:20 CDT)
- RE: how to display the periodic box in VMD (Thu Oct 08 2009 - 14:30:27 CDT)
- Re: how to display the periodic box in VMD (Wed Oct 07 2009 - 18:39:55 CDT)
- Re: Bond representation of coarse grained molecules (Wed Oct 07 2009 - 09:39:42 CDT)
- Re: How to translate my diffused protein back to COM? (Mon Oct 05 2009 - 20:31:13 CDT)
- Re: Tracking atoms automatically (Mon Oct 05 2009 - 13:24:17 CDT)
- Re: distance of two center of mass (Mon Oct 05 2009 - 06:04:33 CDT)
- Re: Breaking a trajectory into separate files with tcl (Mon Oct 05 2009 - 01:41:49 CDT)
- Re: Problems with Stride (Fri Oct 02 2009 - 13:06:45 CDT)
- Re: Reading output of quantum packages and plotting orbitals (Fri Oct 02 2009 - 11:52:09 CDT)
- Re: how to load an external file to user field (Thu Oct 01 2009 - 16:12:41 CDT)
- Re: Reading output of quantum packages and plotting orbitals (Wed Sep 30 2009 - 17:38:26 CDT)
- Re: H_Bonds (Mon Sep 28 2009 - 14:16:12 CDT)
- Re: text timer in vmd animations (Mon Sep 28 2009 - 10:40:38 CDT)
- Re: Return value of a vector (Mon Sep 28 2009 - 09:35:25 CDT)
- Re: user field (Mon Sep 28 2009 - 09:28:03 CDT)
- Re: text timer in vmd animations (Mon Sep 28 2009 - 09:30:19 CDT)
- Re: ERROR) Error reading bond information. (Fri Sep 25 2009 - 12:16:30 CDT)
- Re: ERROR) Error reading bond information. (Fri Sep 25 2009 - 10:02:52 CDT)
- Re: ERROR) Error reading bond information. (Fri Sep 25 2009 - 09:11:49 CDT)
- Re: ERROR) Error reading bond information. (Fri Sep 25 2009 - 07:55:47 CDT)
- Re: Frame creation (Fri Sep 25 2009 - 05:14:03 CDT)
- Re: Velocity Auto Correlation (Thu Sep 24 2009 - 21:49:01 CDT)
- Re: Velocity Auto Correlation (Thu Sep 24 2009 - 09:30:33 CDT)
- Re: Frame creation (Thu Sep 24 2009 - 10:13:16 CDT)
- Re: atom selection (Mon Sep 21 2009 - 14:22:08 CDT)
- Re: Resize window from TCL (Mon Sep 21 2009 - 13:08:14 CDT)
- Re: automated loading (Mon Sep 21 2009 - 11:18:17 CDT)
- Re: problem with density map obtained by volmap (Sun Sep 20 2009 - 13:44:03 CDT)
- Re: Question about PSF generation (Sun Sep 20 2009 - 13:34:12 CDT)
- Re: Velocity Auto Correlation (Sat Sep 19 2009 - 10:14:22 CDT)
- Re: water molecules around proteins (Sat Sep 19 2009 - 09:55:57 CDT)
- Re: Velocity Auto Correlation (Fri Sep 18 2009 - 16:18:44 CDT)
- Re: Velocity Auto Correlation (Fri Sep 18 2009 - 15:36:45 CDT)
- Re: Reading new amber prmtop formats. (Wed Sep 16 2009 - 13:28:37 CDT)
- Re: PSF for AMBER top + crd files (Tue Sep 15 2009 - 17:10:32 CDT)
- Re: Segmentation fault on linux Fedora 11 (Mon Sep 14 2009 - 14:45:02 CDT)
- Re: get coordinates (Sat Sep 12 2009 - 13:01:35 CDT)
- Re: psf for CNT? (Wed Sep 09 2009 - 10:46:49 CDT)
- Re: VMD on Suse 11.1 w/ NVIDIA dies. (Wed Sep 09 2009 - 09:17:55 CDT)
- Re: Bond representation of coarse grained molecules (Sat Sep 05 2009 - 14:45:59 CDT)
- Re: VMD on Suse 11.1 w/ NVIDIA dies. (Sat Sep 05 2009 - 14:33:34 CDT)
- Re: Script error (Tue Sep 01 2009 - 12:55:26 CDT)
- Re: User field (Fri Aug 28 2009 - 16:14:00 CDT)
- Re: viewing MOs (Fri Aug 28 2009 - 10:29:57 CDT)
- Re: tinkerxyz (Tue Aug 25 2009 - 21:21:28 CDT)
- Re: problem with 1.8.7 installation (Tue Aug 25 2009 - 06:43:51 CDT)
- Re: Color bar (Thu Aug 20 2009 - 17:28:26 CDT)
- Re: Pyhton Mode (Thu Aug 20 2009 - 08:10:51 CDT)
- Re: Render command not executed (Wed Aug 19 2009 - 04:30:36 CDT)
- Re: Turn off the autobond feature in VMD (Wed Aug 12 2009 - 09:40:08 CDT)
- Re: Periodic Bonding (Wed Aug 12 2009 - 09:42:00 CDT)
- Re: Why the win_version of vmd1.86 can not change to python interpreter? (Sat Aug 01 2009 - 09:30:12 CDT)
- Re: vmd Linux 64 (Fri Jul 31 2009 - 07:50:20 CDT)
- Re: visualization problem (Fri Jul 31 2009 - 07:44:29 CDT)
- Re: Stripping out H20 (Sun Jul 26 2009 - 20:09:45 CDT)
- Re: File to benchmark a new GPU system (Sun Jul 26 2009 - 20:07:37 CDT)
- Re: PDB COORDINATES (Sun Jul 26 2009 - 19:59:55 CDT)
- Re: Stripping out H20 (Sun Jul 26 2009 - 18:47:33 CDT)
- Re: File to benchmark a new GPU system (Sun Jul 26 2009 - 18:22:59 CDT)
- Re: question about atomselect and periodic condition (Fri Jul 24 2009 - 09:17:13 CDT)
- Re: time-averaged RMSD per residue (Fri Jul 24 2009 - 09:19:52 CDT)
- Re: Problem: VMD 1.8.7 beta 5 does not launch on AIX (Fri Jul 24 2009 - 09:22:09 CDT)
- Re: drawing bond for coarse grained model (Thu Jul 23 2009 - 14:06:53 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer (Thu Jul 23 2009 - 12:29:49 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer (Thu Jul 23 2009 - 11:23:34 CDT)
- Re: Disable the set output (Thu Jul 23 2009 - 07:45:34 CDT)
- Re: error using Molecule.save() (vmd python) (Tue Jul 21 2009 - 08:43:21 CDT)
- Re: IMD interface for VASP (Mon Jul 20 2009 - 19:03:45 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer (Mon Jul 20 2009 - 15:43:56 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer (Mon Jul 20 2009 - 11:36:28 CDT)
- Re: VMD 1.8.7 installation problem (Mon Jul 20 2009 - 08:49:00 CDT)
- Re: File conversion for from Amber to Charmm (Mon Jul 20 2009 - 08:54:41 CDT)
- Re: Re PSF file generation (Mon Jul 20 2009 - 08:49:33 CDT)
- Re: Problem With Psfgen again (Fri Jul 17 2009 - 14:37:13 CDT)
- Re: File conversion for from Amber to Charmm (Fri Jul 17 2009 - 10:14:24 CDT)
- Re: error after changing of PYTHONPATH variable (Fri Jul 17 2009 - 09:16:22 CDT)
- Re: error after changing of PYTHONPATH variable (Fri Jul 17 2009 - 08:22:13 CDT)
- Re: File conversion for from Amber to Charmm (Fri Jul 17 2009 - 07:23:35 CDT)
- Re: Problems with psfgen (Thu Jul 16 2009 - 17:30:59 CDT)
- Re: make movie w/ VMD in SUSE environment (Thu Jul 16 2009 - 11:40:03 CDT)
- Re: A problem on PBC (Thu Jul 16 2009 - 11:56:57 CDT)
- Re: ied and gypython (Thu Jul 16 2009 - 09:22:39 CDT)
- Re: python and vmd (Wed Jul 15 2009 - 07:46:20 CDT)
- Re: getting other variables out of LAMMPS ascii dump files (Tue Jul 14 2009 - 18:00:35 CDT)
- Re: getting other variables out of LAMMPS ascii dump files (Mon Jul 13 2009 - 14:21:03 CDT)
- Re: How to make a selection in atomselect using an element in a list? (Wed Jul 08 2009 - 11:17:14 CDT)
- Re: namd-l: Re: Hardware for NAMD / VMD machine (Mon Jul 06 2009 - 16:46:40 CDT)
- Re: NAMDenergy: problems on changing VMD version/platform (Sun Jul 05 2009 - 13:58:50 CDT)
- Re: NAMDenergy: problems on changing VMD version/platform (Sat Jul 04 2009 - 11:54:50 CDT)
- Re: namd-l: Hardware for NAMD / VMD machine (Fri Jul 03 2009 - 11:56:08 CDT)
- Re: Curious about analytical capabilities of VMD (Fri Jul 03 2009 - 11:04:53 CDT)
- Re: Manunlly Assign Secondary Structure (May Not Be Realistic) (Thu Jul 02 2009 - 14:42:30 CDT)
- Re: superimposing proteins based on a few residues (Wed Jul 01 2009 - 17:13:25 CDT)
- Re: Coloring atoms by a general scalar (Wed Jul 01 2009 - 08:12:52 CDT)
- Re: Some VMD questions (Tue Jun 30 2009 - 13:56:02 CDT)
- Re: Coloring atoms by a general scalar (Tue Jun 30 2009 - 12:53:26 CDT)
- Re: Funny tcl/tk script behavior.... (Tue Jun 30 2009 - 09:48:45 CDT)
- Re: atom name can not exceed four characters in pdb and psf? (Mon Jun 29 2009 - 22:32:22 CDT)
- GPGPU Programming summer school at University of Tennessee, Aug 10-14. (Mon Jun 29 2009 - 14:44:15 CDT)
- Re: running vmd on computer node (Mon Jun 29 2009 - 13:46:51 CDT)
- Re: Curious about analytical capabilities of VMD (Mon Jun 29 2009 - 08:51:01 CDT)
- Re: Curious about analytical capabilities of VMD (Fri Jun 26 2009 - 07:09:06 CDT)
- Re: Rejecting plugin... (Wed Jun 24 2009 - 14:30:15 CDT)
- Re: vmd error message in Fedora 11 (Wed Jun 24 2009 - 12:07:24 CDT)
- bigdcd v3 available. testers needed. (Wed Jun 24 2009 - 09:07:14 CDT)
- Re: alignment (Fri Jun 19 2009 - 10:56:09 CDT)
- Re: "Re: ABINIT plugin ready for testing: can read GEO and DEN files. (Thu Jun 18 2009 - 11:13:59 CDT)
- Re: Re: ABINIT plugin ready for testing: can read GEO and DEN files. (Wed Jun 17 2009 - 12:01:30 CDT)
- Re: Re: ABINIT plugin ready for testing: can read GEO and DEN files. (Tue Jun 16 2009 - 22:59:20 CDT)
- Re: Re: ABINIT plugin ready for testing: can read GEO and DEN files. (Tue Jun 16 2009 - 07:31:03 CDT)
- Re: "Save coordinates..." silently overwrites existing files... (Mon Jun 15 2009 - 11:29:10 CDT)
- Re: Memory allocation problem (Mon Jun 15 2009 - 10:00:02 CDT)
- Re: ABINIT plugin ready for testing: can read GEO and DEN files. (Mon Jun 15 2009 - 10:18:34 CDT)
- Re: Ho to save exactly the screen structure? (Mon Jun 15 2009 - 10:20:28 CDT)
- Re: vmdnumpy for IED... (Sun Jun 14 2009 - 18:23:41 CDT)
- Re: Ho to save exactly the screen structure? (Sun Jun 14 2009 - 16:58:32 CDT)
- RE: Re: [lammps-users] LAMMPS to VMD: lmp2vmd tool (Sat Jun 13 2009 - 17:00:27 CDT)
- Re: Tcl commands and X11 (Fri Jun 12 2009 - 13:26:59 CDT)
- Re: FW: Unable to render electrostatic potential cube files with most non-HF densities (Thu Jun 11 2009 - 09:19:21 CDT)
- Re: Transparency settings (Wed Jun 10 2009 - 09:38:57 CDT)
- RE: Re: [lammps-users] LAMMPS to VMD: lmp2vmd tool (Wed Jun 10 2009 - 08:36:44 CDT)
- Re: plugin: can I load volumetric data as frames (i.e. timesteps)? (Wed Jun 10 2009 - 08:16:58 CDT)
- Re: disulphide bond formation (Fri Jun 05 2009 - 10:45:12 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file (Fri Jun 05 2009 - 11:09:59 CDT)
- debugging tool for atomselect (Thu Jun 04 2009 - 17:05:10 CDT)
- Re: Energy (Wed Jun 03 2009 - 22:29:45 CDT)
- Re: Memory Problem with tcl/tk script...(2) (Wed Jun 03 2009 - 13:57:40 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file (Wed Jun 03 2009 - 08:16:06 CDT)
- Re: adding atoms to empty molecules (Tue Jun 02 2009 - 09:22:43 CDT)
- Re: Memory Problem with tcl/tk script... (Tue Jun 02 2009 - 09:27:22 CDT)
- Re: Macbook and VMD Tk windows (Fri May 29 2009 - 08:07:21 CDT)
- Re: VMD crash (Thu May 28 2009 - 19:46:33 CDT)
- Re: VMD crash (Thu May 28 2009 - 19:05:48 CDT)
- Re: [lammps-users] LAMMPS to VMD: lmp2vmd tool (Thu May 28 2009 - 10:31:42 CDT)
- Re: problem with dispdev (Wed May 27 2009 - 16:20:37 CDT)
- Re: main window missing? (Wed May 27 2009 - 16:01:33 CDT)
- Re: Isosurface and Fieldlines Not rendered in colour (Tue May 26 2009 - 08:44:49 CDT)
- Re: default colors (Mon May 25 2009 - 16:10:47 CDT)
- bigdcd are related issues. was: Re: VMD 1.8.7 beta 3 posted for download... (Mon May 25 2009 - 11:42:59 CDT)
- Re: Plugin: molfile_plugin_t filename_extension; problem and bug... (Mon May 25 2009 - 09:52:04 CDT)
- Re: Re: abinit plugin for VMD not yet tried? (Mon May 25 2009 - 10:05:30 CDT)
- Re: VMD 1.8.7 beta 3 posted for download... (Sun May 24 2009 - 19:52:41 CDT)
- Re: How to compute excluded volume using volmap? (Sun May 24 2009 - 14:32:20 CDT)
- Re: VMD crashes in VolumeSlice representation (Sun May 24 2009 - 13:49:41 CDT)
- Re: "Determine file type" list is far too long... (Sun May 24 2009 - 11:40:33 CDT)
- Re: Problem in loading data (Sun May 24 2009 - 11:08:09 CDT)
- Re: "Determine file type" list is far too long... (Sun May 24 2009 - 08:52:35 CDT)
- Re: Re: abinit plugin for VMD not yet tried? (Sun May 24 2009 - 08:38:11 CDT)
- Re: Question3 about introducing variables in "mol selection..." (Fri May 22 2009 - 17:09:08 CDT)
- Re: Question2 about introducing variables in "mol selection..." (Fri May 22 2009 - 16:10:24 CDT)
- Re: Question about introducing variables in "mol selection..." (Fri May 22 2009 - 11:34:03 CDT)
- Re: pdb file generated not readable by tleap (Fri May 22 2009 - 10:08:06 CDT)
- Re: abinit plugin for VMD not yet tried? (Fri May 22 2009 - 10:05:14 CDT)
- Re: bonds in .psf file (Thu May 21 2009 - 12:48:40 CDT)
- Re: angles and dihedrals in .psf file (Thu May 21 2009 - 11:28:15 CDT)
- Re: Adding two separate pdb files: Lipid Bilayer's with Protein's (Wed May 20 2009 - 16:34:45 CDT)
- Re: pdb file generated not readable by tleap (Wed May 20 2009 - 16:28:54 CDT)
- Re: Distance between COM for 2 chains for each frame of trajectory (Wed May 20 2009 - 14:05:27 CDT)
- Re: Distance between COM for 2 chains for each frame of trajectory (Wed May 20 2009 - 12:09:39 CDT)
- Re: how to load a state from the command line (Wed May 20 2009 - 09:51:47 CDT)
- Re: default colors (Wed May 20 2009 - 09:38:40 CDT)
- Re: VMD 1.8.7b3 and desktop effects on Fedora 10 (Wed May 20 2009 - 08:43:16 CDT)
- Re: Request for change in gaussian cube reader (Tue May 19 2009 - 14:32:10 CDT)
- Re: VMD 1.8.7 beta 3 posted for download... (Mon May 18 2009 - 20:29:44 CDT)
- Re: VMD as a python module (Mon May 18 2009 - 09:27:16 CDT)
- Re: vmd / python / f10 (Sun May 17 2009 - 08:37:47 CDT)
- Re: namdenergy missing for -dispdev none (vmd 1.8.6) (Fri May 15 2009 - 13:27:22 CDT)
- Re: Change requested in lammps plugin for VMD (Fri May 15 2009 - 12:32:48 CDT)
- Re: adding bonds with the mouse and writing psf (Fri May 15 2009 - 10:28:59 CDT)
- Re: How to color atom by charge (Thu May 14 2009 - 07:01:32 CDT)
- Re: Color problem. (Wed May 13 2009 - 17:45:44 CDT)
- Re: Can bonds radius be controlled by tcl command? (Wed May 13 2009 - 17:55:17 CDT)
- Re: Sphere representaion with radius from pdb field "occupancy" or "temp. fac" (Wed May 13 2009 - 05:56:32 CDT)
- Re: How to compute excluded volume using volmap? (Tue May 12 2009 - 08:47:43 CDT)
- Re: selecting waters (Mon May 11 2009 - 13:11:50 CDT)
- Re: calculate charges of the binding site residues with psfgen (Sun May 10 2009 - 07:00:29 CDT)
- Re: Thiol on gold (Fri May 08 2009 - 10:17:49 CDT)
- Re: vmd-read data from lammps (Thu May 07 2009 - 21:22:51 CDT)
- Re: Display not updated when using move() from Python in VMD 1.8.6 (Thu May 07 2009 - 10:45:00 CDT)
- Re: Display not updated when using move() from Python in VMD 1.8.6 (Thu May 07 2009 - 09:44:06 CDT)
- Re: Display not updated when using move() from Python in VMD 1.8.6 (Wed May 06 2009 - 18:18:54 CDT)
- Re: VMD 1.8.7beta1 doesn't close OpenGL window (Tue May 05 2009 - 08:26:03 CDT)
- Re: selecting ribose atoms? (Fri May 01 2009 - 19:48:34 CDT)
- Re: Size of a protein (Wed Apr 29 2009 - 16:50:25 CDT)
- Re: hydrogen bonds tcl script (Tue Apr 28 2009 - 10:17:26 CDT)
- Re: Can the CG model built from VMD be used as an Input of NAMD,GROMACS and any other MD program? (Tue Apr 28 2009 - 08:32:24 CDT)
- Re: Manipulating dcd using script in VMD (Tue Apr 28 2009 - 08:24:04 CDT)
- Re: graphics for publication (Fri Apr 24 2009 - 11:26:58 CDT)
- Re: Error processing bonds (Fri Apr 24 2009 - 08:42:34 CDT)
- Re: local packing density around a chemical group (say, a methyl group or a side chain) (Thu Apr 23 2009 - 11:27:20 CDT)
- Re: Select atoms using coordinates (Thu Apr 23 2009 - 08:48:57 CDT)
- Re: installed plugin won't show up next time (Thu Apr 23 2009 - 08:45:51 CDT)
- Re: sys.argv, python and VMD (Wed Apr 22 2009 - 10:42:58 CDT)
- Re: Secondary Structure Depiction (Tue Apr 21 2009 - 14:07:41 CDT)
- Re: Secondary Structure Depiction (Tue Apr 21 2009 - 11:23:10 CDT)
- Re: pbctools on alpha version (Sat Apr 18 2009 - 10:11:47 CDT)
- Re: Possible bug in vmd 1.8.7 alpha? (Sat Apr 18 2009 - 10:15:24 CDT)
- Re: display all frames simultaneously (Thu Apr 16 2009 - 22:11:12 CDT)
- Re: Problem in finding the HBonds (Wed Apr 15 2009 - 07:56:52 CDT)
- Re: (Tue Apr 14 2009 - 07:25:54 CDT)
- Re: install plugin: problems with vmd_install_extension (Fri Apr 10 2009 - 10:13:57 CDT)
- Re: install plugin: problems with vmd_install_extension (Fri Apr 10 2009 - 09:10:13 CDT)
- Re: within, used with pbcwrap (Fri Apr 10 2009 - 09:03:36 CDT)
- Re: about TkConsole (Tue Apr 07 2009 - 21:32:40 CDT)
- Re: about TkConsole (Tue Apr 07 2009 - 12:58:48 CDT)
- Re: OS X intel binary problem (Sun Apr 05 2009 - 09:48:37 CDT)
- Re: too many bonds (Sun Apr 05 2009 - 08:57:59 CDT)
- Re: OS X intel binary problem (Sun Apr 05 2009 - 09:05:07 CDT)
- Re: Problem with autoionize ? (Thu Apr 02 2009 - 11:46:33 CDT)
- Re: Problem with autoionize ? (Thu Apr 02 2009 - 09:25:33 CDT)
- Re: How to add heme to dowser plugin? (Mon Mar 30 2009 - 20:24:24 CDT)
- Re: openGL library (Thu Mar 26 2009 - 20:20:31 CDT)
- Re: howto select stain reveal map (Thu Mar 26 2009 - 06:41:07 CDT)
- Re: how to block psfgen warning messages (Wed Mar 25 2009 - 17:17:19 CDT)
- Re: merging atomselection (Wed Mar 25 2009 - 17:20:45 CDT)
- Re: Command line argument (Wed Mar 25 2009 - 10:57:22 CDT)
- Re: vmd_plot (Wed Mar 25 2009 - 07:47:14 CDT)
- Re: building VMD on LINUX (Tue Mar 17 2009 - 08:58:38 CDT)
- Re: rlwrap bug in Ubuntu (Sun Mar 15 2009 - 15:14:45 CDT)
- Re: rlwrap bug in Ubuntu (Sun Mar 15 2009 - 09:32:49 CDT)
- Re: regarding draw_arrow.tcl (Fri Mar 13 2009 - 09:51:23 CDT)
- Re: regarding draw_arrow.tcl (Wed Mar 11 2009 - 11:30:30 CDT)
- Re: How to use " segment " in tcl script. (Wed Mar 11 2009 - 10:15:05 CDT)
- Re: obj export (Tue Mar 10 2009 - 10:25:07 CDT)
- Re: obj export (Tue Mar 10 2009 - 09:24:01 CDT)
- Re: charmm binary ele. pot. (Mon Mar 09 2009 - 13:59:25 CDT)
- <please insert a decent subject here next time, thanks> (Mon Mar 09 2009 - 12:08:49 CDT)
- Re: charmm binary ele. pot. (Mon Mar 09 2009 - 11:57:21 CDT)
- Re: correlation (Sun Mar 08 2009 - 10:33:03 CDT)
- Re: problem with Dowser (Sat Mar 07 2009 - 20:18:42 CST)
- Re: Display issue on VMD for Linux (Wed Mar 04 2009 - 21:55:04 CST)
- Re: Problem in IMD with Compiled VMD (Wed Mar 04 2009 - 08:55:24 CST)
- Re: OpenGL Window (Wed Mar 04 2009 - 07:55:24 CST)
- Re: select atoms (Mon Mar 02 2009 - 20:24:55 CST)
- Re: Help: Installation Problem (Sat Feb 28 2009 - 07:45:27 CST)
- Re: wrong bonds during loading pdb file(protein plus lipids) (Fri Feb 27 2009 - 22:01:19 CST)
- Re: wrong bonds during loading pdb file(protein plus lipids) (Fri Feb 27 2009 - 20:47:32 CST)
- Re: (Fri Feb 27 2009 - 14:48:42 CST)
- Re: Displaying local water molecules throughout trajectory (Thu Feb 26 2009 - 15:20:50 CST)
- Re: Help: Installation Problem (Thu Feb 26 2009 - 10:57:30 CST)
- Re: embed VMD in web page (Wed Feb 25 2009 - 12:03:34 CST)
- Re: question about "measure dihed" with COM points (Tue Feb 24 2009 - 19:51:15 CST)
- Re: Adding a Water Box (Mon Feb 23 2009 - 19:00:55 CST)
- Re: Can you show me an example of the .xyz file that is used to calculate the IR spectrum (Mon Feb 23 2009 - 14:46:18 CST)
- Re: passing arguments to a vmd script which is executed using play or source (Mon Feb 23 2009 - 10:20:55 CST)
- Re: passing arguments to a vmd script which is executed using play or source (Mon Feb 23 2009 - 09:15:44 CST)
- Re: passing arguments to a vmd script which is executed using play or source (Mon Feb 23 2009 - 09:08:58 CST)
- Re: a way to create a nice image (Sun Feb 22 2009 - 11:16:17 CST)
- Re: a way to create a nice image (Sat Feb 21 2009 - 11:03:44 CST)
- Re: transparent background (Fri Feb 20 2009 - 14:39:17 CST)
- Re: converting trajectory files with catdcd in command line (Fri Feb 20 2009 - 08:02:38 CST)
- Re: "pbcwithin" keyword (Thu Feb 19 2009 - 11:00:48 CST)
- Re: change cylinder surface properties (Mon Feb 16 2009 - 18:29:11 CST)
- Re: error messages "*** glibc detected *** free(): invalid pointer" (Mon Feb 16 2009 - 12:26:19 CST)
- Re: installation (Sun Feb 15 2009 - 12:46:34 CST)
- Re: problem (Wed Feb 11 2009 - 09:01:42 CST)
- Re: Flow Fields (Tue Feb 10 2009 - 16:53:19 CST)
- Re: How to specify processors for running VMD on a cluster? (Tue Feb 10 2009 - 15:35:46 CST)
- Re: How to specify processors for running VMD on a cluster? (Tue Feb 10 2009 - 12:24:58 CST)
- Re: multiplot : integration of undrawing command (?) (Sun Feb 08 2009 - 23:48:49 CST)
- Re: Progress Bar for the Elapsed Time: rendering problem (Thu Feb 05 2009 - 17:23:40 CST)
- Re: trajectory path script (Thu Feb 05 2009 - 11:39:06 CST)
- Re: property iterate over a range (representation / draw style) (Tue Feb 03 2009 - 12:10:49 CST)
- Re: deleting specific residues or atoms (Tue Feb 03 2009 - 10:55:28 CST)
- Re: scriptable way to add hydrogens (Sat Jan 31 2009 - 17:35:53 CST)
- Re: how to set color parameters differently for different molecules (Thu Jan 29 2009 - 20:35:35 CST)
- Re: VMD & NAMD atoms naming convention? (Tue Jan 27 2009 - 08:35:34 CST)
- Re: get a PDB file from DCD file (Tue Jan 27 2009 - 08:42:18 CST)
- Re: Re: How to change title of display window? (Mon Jan 26 2009 - 12:13:13 CST)
- Re: Re: How to change title of display window? (Sun Jan 25 2009 - 21:08:18 CST)
- Re: how to set color parameters differently for different molecules (Sun Jan 25 2009 - 13:18:10 CST)
- Re: accessing bonds angles dihedrals etc lists after PSF file is read into VMD (Fri Jan 23 2009 - 16:20:30 CST)
- Re: VMD not loading in Suse 11.1 (Fri Jan 23 2009 - 09:04:18 CST)
- Re: Breaking Bonds in VMD (Tue Jan 20 2009 - 17:21:16 CST)
- Re: Test builds of VMD 1.8.7 using Tcl/Tk 8.5.x... (Tue Jan 20 2009 - 17:31:19 CST)
- Re: Problems with tcl/tk 8.5 (Tue Jan 20 2009 - 08:53:02 CST)
- Re: VMD plugin for Desmond (Tue Jan 20 2009 - 08:58:24 CST)
- Re: VMD window transparent in Opensuse 11.1 ATI system (Tue Jan 20 2009 - 08:56:12 CST)
- Re: Fwd: Tcl script (Tue Jan 20 2009 - 08:49:21 CST)
- Re: Download the newest version of VMD (Mon Jan 19 2009 - 10:09:33 CST)
- Re: XYZ trajectory with different atom types? (Fri Jan 16 2009 - 14:00:00 CST)
- Re: Data fields in vmd (Thu Jan 15 2009 - 14:10:26 CST)
- Re: Understanding topology files? (Thu Jan 15 2009 - 14:06:16 CST)
- Re: Data fields in vmd (Wed Jan 14 2009 - 14:56:10 CST)
- Re: updating DCD frames in python (Wed Jan 14 2009 - 11:11:45 CST)
- Re: center of mass (Mon Jan 12 2009 - 14:37:05 CST)
- Re: 4x4 trafo matrices to get "homo-two-protein-complex" (Mon Jan 12 2009 - 14:32:27 CST)
- Re: VMD for Linux (Mon Jan 12 2009 - 09:11:00 CST)
- Re: 4x4 trafo matrices to get "homo-two-protein-complex" (Mon Jan 12 2009 - 09:05:41 CST)
- Re: : about complexing protein and ligand! (Mon Jan 12 2009 - 08:54:21 CST)
- Re: odd render problems with Vista (Sun Jan 11 2009 - 14:37:10 CST)
- Re: odd render problems with Vista (Sun Jan 11 2009 - 14:27:58 CST)
- Re: putting a set of selections in a list or an array (Sun Jan 11 2009 - 13:53:41 CST)
- Re: cube file question (Fri Jan 09 2009 - 08:23:16 CST)
- Re: Functional Groups (Fri Jan 09 2009 - 08:16:12 CST)
- Re: measure rmsf - command (step argument) (Wed Jan 07 2009 - 10:44:18 CST)
- Re: Large dcd file (Tue Jan 06 2009 - 19:04:46 CST)
- Re: Large dcd file (Tue Jan 06 2009 - 19:01:25 CST)
- Re: eliminate atoms from psf and pdb files (Tue Jan 06 2009 - 12:33:37 CST)
- Re: changing bond color (Tue Jan 06 2009 - 12:30:19 CST)
- Re: tcl scripts in parallel in VMD? (Tue Jan 06 2009 - 10:06:25 CST)
- Re: list of all the file type keywords for "mol load"? (Mon Jan 05 2009 - 10:44:03 CST)
- Re: I need a bid trajectory please!!! (Fri Dec 26 2008 - 14:20:38 CST)
- Re: Space distribution functions (Fri Dec 26 2008 - 14:15:58 CST)
- Re: beta column format in PDB (Wed Dec 24 2008 - 15:53:27 CST)
- Re: beta column format in PDB (Wed Dec 24 2008 - 14:33:53 CST)
- Re: CHARMM to AMBER trajectory conversion (Fri Dec 19 2008 - 09:56:01 CST)
- Re: QM Geometry optimization (Wed Dec 17 2008 - 13:53:09 CST)
- Re: QM Geometry optimization (Wed Dec 17 2008 - 09:23:33 CST)
- Re: the exact definition of the keyword "radius" of the atom selection (Sat Dec 13 2008 - 16:37:11 CST)
- Re: To find the residues on each side of the protein (Wed Dec 03 2008 - 05:17:48 CST)
- Re: memory leak found (Tue Dec 02 2008 - 12:58:25 CST)
- Re: Rotation of molecules (Tue Dec 02 2008 - 11:29:25 CST)
- Re: memory leak found (Tue Dec 02 2008 - 11:23:28 CST)
- Re: transparent or translucent backgrond for images (Sun Nov 30 2008 - 05:37:01 CST)
- Re: how to prevent view reset on data load (Sun Nov 30 2008 - 05:46:45 CST)
- Re: tcl fscript or Removeing protein flucutation (Wed Nov 26 2008 - 10:24:18 CST)
- Re: Other color scales than the predefined ones? (Wed Nov 26 2008 - 10:21:02 CST)
- Re: Movie of a xyz trajectory (Wed Nov 26 2008 - 05:12:34 CST)
- Re: view only parts of the loaded volumetric data (Fri Nov 21 2008 - 05:01:21 CST)
- Re: Loading .vel file in VMD (Fri Nov 21 2008 - 03:45:39 CST)
- Re: question (Thu Nov 20 2008 - 11:55:59 CST)
- Re: running a script (Thu Nov 20 2008 - 11:54:38 CST)
- Re: representation ColorID in Tcl (Wed Nov 19 2008 - 12:24:51 CST)
- Re: General question about the memory usage of VMD (Mon Nov 17 2008 - 14:31:02 CST)
- Re: how to run catdcd from within a proc (Mon Nov 17 2008 - 12:48:52 CST)
- Re: wavefront and VMD (Mon Nov 17 2008 - 09:12:55 CST)
- Re: movie (Sun Nov 09 2008 - 11:56:35 CST)
- Re: Sequentially numbering atom names in pdb file (Wed Nov 05 2008 - 16:24:57 CST)
- Re: [Fwd: problems with manipulating control switches on VMS main menu] (Fri Oct 31 2008 - 18:05:46 CDT)
- Re: Per-frame 'graphics'? (Fri Oct 31 2008 - 16:59:44 CDT)
- Re: reading multiples molecules. (Wed Oct 29 2008 - 11:07:55 CDT)
- Re: reading multiples molecules. (Wed Oct 29 2008 - 10:14:50 CDT)
- Re: Render surface colored by electrostatic potential (Tue Oct 28 2008 - 14:03:47 CDT)
- Re: move matrix definition (Tue Oct 28 2008 - 12:14:13 CDT)
- Re: using the beta and occupancy columns as state variables (Tue Oct 28 2008 - 09:17:03 CDT)
- Re: reading multiples molecules. (Tue Oct 28 2008 - 09:20:54 CDT)
- Re: A question about the namd energy plugin of VMD (Sun Oct 26 2008 - 13:12:06 CDT)
- Re: PBCtools verison 2.3: how to obtain it? (Fri Oct 24 2008 - 10:32:16 CDT)
- Re: advanced selections (or explicit pair list) for measure gofr ? (Fri Oct 24 2008 - 10:31:13 CDT)
- Re: independent stereo display (Thu Oct 23 2008 - 14:15:13 CDT)
- Re: dcd format (Wed Oct 22 2008 - 15:59:08 CDT)
- Re: dcd format (Wed Oct 22 2008 - 14:17:22 CDT)
- RE: dcd format (Wed Oct 22 2008 - 12:49:56 CDT)
- Re: fitting structure to map generated by Volmap (Wed Oct 22 2008 - 10:38:15 CDT)
- Re: fitting structure to map generated by Volmap (Tue Oct 21 2008 - 15:53:07 CDT)
- Re: fitting structure to map generated by Volmap (Tue Oct 21 2008 - 14:53:57 CDT)
- Re: fitting structure to map generated by Volmap (Tue Oct 21 2008 - 09:01:22 CDT)
- Re: feature request (Sun Oct 19 2008 - 13:26:42 CDT)
- Re: Catdcd? (Thu Oct 16 2008 - 13:23:14 CDT)
- RE: Problem in text mode (Thu Oct 16 2008 - 09:53:50 CDT)
- Re: saving trajectories from the command line (Thu Oct 16 2008 - 09:11:17 CDT)
- Re: velocity calculations (Wed Oct 15 2008 - 11:20:33 CDT)
- Re: Deleting frames / molecules does not free up memory! (Tue Oct 14 2008 - 11:13:11 CDT)
- Re: why atomselection "protein" can not choose all the protein atoms with different alternate locations? (Mon Oct 13 2008 - 18:23:35 CDT)
- Re: How to specify color based on dihedral angle? (Mon Oct 13 2008 - 14:25:11 CDT)
- Re: CHARMM TO AMBER FORMAT CONVERT (Sun Oct 12 2008 - 19:26:18 CDT)
- Re: intersurf in vmd (Sat Oct 11 2008 - 18:44:10 CDT)
- Re: STRIDE analysis of beta-sheets in VMD (Fri Oct 10 2008 - 16:50:59 CDT)
- Re: Density distribution plots (Fri Oct 10 2008 - 16:26:20 CDT)
- Re: Question about the Main Menu window display (Fri Oct 10 2008 - 14:47:28 CDT)
- Re: loading python (Fri Oct 10 2008 - 11:37:28 CDT)
- Re: loading python (Thu Oct 09 2008 - 16:31:13 CDT)
- Re: Density distribution plots (Thu Oct 09 2008 - 14:14:57 CDT)
- Re: Fw: VMD 1.8.6 for UBUNTU 8.04LTS (Wed Oct 08 2008 - 20:57:54 CDT)
- Re: pbctools usage (Wed Oct 08 2008 - 10:23:44 CDT)
- Re: lipid tail selection (Mon Oct 06 2008 - 09:18:15 CDT)
- Re: atom type (Thu Oct 02 2008 - 13:16:47 CDT)
- Re: volumetric maps (Thu Oct 02 2008 - 10:57:45 CDT)
- Re: (Sun Sep 28 2008 - 13:15:18 CDT)
- Re: visualisation problem with bonds and PBC (Fri Sep 26 2008 - 11:46:39 CDT)
- Re: viewing an embryo (Tue Sep 23 2008 - 15:10:02 CDT)
- Re: trouble with running vmd after installation , machine gets hung (Sun Sep 21 2008 - 03:13:41 CDT)
- Re: trouble with running vmd after installation , machine gets hung (Fri Sep 19 2008 - 06:05:42 CDT)
- Re: Alias histidine residue (Sat Sep 13 2008 - 09:09:31 CDT)
- Re: Rendering problem (Fri Sep 12 2008 - 01:25:43 CDT)
- Re: long bonds (Wed Sep 10 2008 - 10:23:18 CDT)
- Re: saving charges (Mon Sep 08 2008 - 14:13:46 CDT)
- Re: Superimposition: atomselect for reverse topology (Sun Sep 07 2008 - 14:09:44 CDT)
- Re: generate psf structure (Sun Sep 07 2008 - 13:50:39 CDT)
- Re: how to draw the bonds in VMD? (Sun Sep 07 2008 - 13:41:30 CDT)
- Re: Running without interface (Thu Sep 04 2008 - 12:06:44 CDT)
- Re: newbie issues (Tue Sep 02 2008 - 14:10:19 CDT)
- Re: Merge psf and pdb (Tue Sep 02 2008 - 10:46:07 CDT)
- Re: Merge psf and pdb (Tue Sep 02 2008 - 08:15:39 CDT)
- Re: TXT program editor (Thu Aug 28 2008 - 17:51:39 CDT)
- Re: TXT program editor (Thu Aug 28 2008 - 15:50:21 CDT)
- Re: namd-l: diffusion coefficient from rmsd (Wed Aug 27 2008 - 22:39:52 CDT)
- Re: resid of water that is hydrogen bonded (Mon Aug 25 2008 - 14:56:41 CDT)
- Re: measure gofr - how is g(r) normalised? (Mon Aug 25 2008 - 15:14:35 CDT)
- Re: Failure to open PDB files (Mon Aug 25 2008 - 14:52:38 CDT)
- Re: Trouble updating frames in script (Tue Aug 19 2008 - 15:14:42 CDT)
- Re: Trouble updating frames in script (Tue Aug 19 2008 - 13:06:44 CDT)
- Re: how to call dssp in a script (Mon Aug 18 2008 - 10:42:14 CDT)
- Re: Question about trace vmd_frame(molid) (Fri Aug 15 2008 - 13:55:54 CDT)
- Re: Question about trace vmd_frame(molid) (Fri Aug 15 2008 - 12:12:03 CDT)
- Re: LAMMPS Trajectory Bond Specification (Thu Aug 14 2008 - 16:24:13 CDT)
- Re: protein-water hydrogen bonds (Tue Aug 12 2008 - 10:53:35 CDT)
- Re: protein-water hydrogen bonds (Tue Aug 12 2008 - 10:37:45 CDT)
- Re: rdf for big systems (Mon Aug 11 2008 - 13:35:11 CDT)
- Re: save selected residues (Mon Aug 11 2008 - 11:01:48 CDT)
- Re: problem controlling orientation of the simulation box drawn by pbctools (Sun Aug 10 2008 - 11:11:34 CDT)
- Re: save selected residues (Sun Aug 10 2008 - 09:48:15 CDT)
- Re: How to embed 3-D image into powerpoint (Mon Aug 04 2008 - 15:57:41 CDT)
- Re: problem using pbc wrap: broken molecule (Fri Aug 01 2008 - 16:29:59 CDT)
- Re: problem using pbc wrap: broken molecule (Fri Aug 01 2008 - 10:00:18 CDT)
- Re: vmd-rmsd-color-tool (Fri Aug 01 2008 - 09:27:35 CDT)
- Re: ionize with VMD a TOP file (Fri Aug 01 2008 - 09:28:58 CDT)
- Re: Gromacs reading: Why scaling?? (Thu Jul 31 2008 - 19:51:10 CDT)
- Re: Gromacs reading: Why scaling?? (Thu Jul 31 2008 - 19:11:11 CDT)
- Re: VMD with amber rst7 and parm7 files (Thu Jul 31 2008 - 09:02:29 CDT)
- Re: g(r) (Thu Jul 31 2008 - 08:57:34 CDT)
- Re: Vmd on Fedora 9 (Wed Jul 30 2008 - 15:24:29 CDT)
- Re: g(r) (Wed Jul 30 2008 - 14:31:55 CDT)
- Re: Vmd on Fedora 9 (Wed Jul 30 2008 - 12:18:11 CDT)
- Re: Selecting atoms that have real SASA greater than 0, Not using "Surface" (Tue Jul 29 2008 - 20:40:30 CDT)
- Re: Re: periodic boundary conditions (yes, i read the tutorials) (Mon Jul 28 2008 - 20:44:41 CDT)
- Re: solvating protein, fixed residue (Mon Jul 28 2008 - 13:52:42 CDT)
- Re: solvation and box size (Mon Jul 28 2008 - 06:30:07 CDT)
- Re: Python for OS X (Sat Jul 26 2008 - 12:56:18 CDT)
- Re: questions relating to VolMapTool (Wed Jul 23 2008 - 06:30:55 CDT)
- Re: Selecting the sides of a benzene ring (Wed Jul 23 2008 - 06:36:25 CDT)
- Re: rdf for big systems (Tue Jul 22 2008 - 19:09:09 CDT)
- Re: rdf for big systems (Tue Jul 22 2008 - 17:06:30 CDT)
- Re: Creating a VMD movie from a Tcl script (Tue Jul 22 2008 - 15:59:42 CDT)
- Re: vecsub command (Tue Jul 22 2008 - 11:48:31 CDT)
- Re: Selecting the sides of a benzene ring (Tue Jul 22 2008 - 11:45:54 CDT)
- Re: Periodic image and transformation matrix (Mon Jul 21 2008 - 19:50:24 CDT)
- Re: Missing angles and dihedrals (Mon Jul 21 2008 - 19:31:48 CDT)
- Re: Creating a VMD movie from a Tcl script (Mon Jul 21 2008 - 14:13:59 CDT)
- Re: Creating a VMD movie from a Tcl script (Mon Jul 21 2008 - 14:09:46 CDT)
- Re: Creating a VMD movie from a Tcl script (Mon Jul 21 2008 - 12:01:22 CDT)
- Re: real coordinates (Fri Jul 18 2008 - 12:08:25 CDT)
- Re: Tetrahedral representation (Wed Jul 16 2008 - 18:24:09 CDT)
- Re: Problem writing trajectory to "crd" (Amber) format? (Wed Jul 16 2008 - 09:31:59 CDT)
- Re: problem with correct visualization of residues (Tue Jul 15 2008 - 13:39:06 CDT)
- Re: problem with correct visualization of residues (Tue Jul 15 2008 - 13:21:57 CDT)
- Re: Fwd: PDB Bonds versus "distance" bonds (Tue Jul 15 2008 - 11:20:53 CDT)
- Re: speed of movie (Sun Jul 13 2008 - 15:49:02 CDT)
- Re: pick atom id script (Fri Jul 11 2008 - 09:37:49 CDT)
- Re: trajectory to xyz file. (Mon Jul 07 2008 - 15:11:30 CDT)
- Re: Dihedrale angles in VMD (Thu Jul 03 2008 - 12:24:16 CDT)
- Re: Loading Problem (Thu Jul 03 2008 - 12:28:18 CDT)
- Re: The maximal size which can be displayed by VMD? (Wed Jul 02 2008 - 16:36:57 CDT)
- Re: VMDMODULATERIBBON or sausage representation (Tue Jul 01 2008 - 14:07:42 CDT)
- Re: Mac OSX crash with bus error/segmentation fault upon loading pdb/dcd (Mon Jun 30 2008 - 13:17:20 CDT)
- Re: Error using namdstat.tcl script (Mon Jun 30 2008 - 11:42:26 CDT)
- Re: Problem of Movie Maker Plugin (Sat Jun 28 2008 - 11:19:02 CDT)
- Re: how to make a movie of 2 or more trajectories (Fri Jun 27 2008 - 20:57:18 CDT)
- Re: mutate by D-residues... (Fri Jun 27 2008 - 20:47:58 CDT)
- Re: select cylindrical slab (Fri Jun 27 2008 - 12:51:26 CDT)
- Re: Compiling from source on Mac OS X 10.5 (Fri Jun 27 2008 - 14:23:44 CDT)
- Re: Compiling from source on Mac OS X 10.5 (Fri Jun 27 2008 - 13:54:36 CDT)
- Re: vmd shuts itself down (Fri Jun 27 2008 - 09:23:12 CDT)
- Re: How to delete anwanted waters in a special area ? (Wed Jun 25 2008 - 11:51:29 CDT)
- Re: How to visualize iron and chlorine properly. (Mon Jun 23 2008 - 10:13:41 CDT)
- Re: Re: Re: PSF works in NAMD but not in VMD (Mon Jun 23 2008 - 10:18:33 CDT)
- Re: Inquiry concerning the plugin "Inorganic builder" (Mon Jun 23 2008 - 10:11:04 CDT)
- Re: how to export into postscript with MultiPlot in tcl mode? (Mon Jun 23 2008 - 10:03:21 CDT)
- Re: Re: PSF works in NAMD but not in VMD (Fri Jun 20 2008 - 09:57:37 CDT)
- Re: displaying hydrogen bonds when hydrogens are not available (Thu Jun 19 2008 - 09:31:53 CDT)
- Re: About occupancy volume maps (Thu Jun 19 2008 - 05:20:24 CDT)
- Re: Labelling Coordinates (not Atoms) (Wed Jun 18 2008 - 18:43:57 CDT)
- Re: render "color by volume" (Tue Jun 17 2008 - 18:34:28 CDT)
- Re: specify a rtf file when generating a psf file. (Tue Jun 17 2008 - 14:50:55 CDT)
- Re: render "color by volume" (Tue Jun 17 2008 - 14:51:28 CDT)
- Re: opening gromacs .gro file gives warning messsage and does not display the molecule (Tue Jun 17 2008 - 09:11:03 CDT)
- Re: Question: Too many arguments (Mon Jun 16 2008 - 09:45:36 CDT)
- Re: User defined charges with PMEpot (Fri Jun 13 2008 - 07:34:42 CDT)
- Re: User defined charges with PMEpot (Thu Jun 12 2008 - 22:24:15 CDT)
- Re: problem loading trajectory in VMD under windows XP (Tue Jun 10 2008 - 20:21:24 CDT)
- Re: IED on MacOSX 10.3.9 (Tue Jun 10 2008 - 07:03:30 CDT)
- Re: Image rendering using pov-ray (Mon Jun 09 2008 - 21:34:57 CDT)
- Re: Image rendering using pov-ray (Mon Jun 09 2008 - 21:30:35 CDT)
- Re: Dipole moment? (Sat Jun 07 2008 - 12:47:19 CDT)
- Re: Total list of Tcl features (Sat Jun 07 2008 - 09:41:05 CDT)
- Re: Total list of Tcl features (Sat Jun 07 2008 - 10:21:27 CDT)
- Re: Solvation (Fri Jun 06 2008 - 09:04:27 CDT)
- Re: Long file paths in Mac OS 10.5.3 (Wed Jun 04 2008 - 16:17:25 CDT)
- Re: Create atom selection from list of integers (Mon Jun 02 2008 - 11:08:16 CDT)
- Re: silly rmsd script doesn' t work ... (Fri May 30 2008 - 07:49:45 CDT)
- Re: Exceeded maximum number of bonds (Thu May 29 2008 - 13:54:24 CDT)
- Re: [lammps-users] MDAnalysis (slightly OT) (Tue May 27 2008 - 12:54:41 CDT)
- Re: IMD per TCL (Tue May 27 2008 - 04:39:51 CDT)
- Re: Label on Movie (Mon May 26 2008 - 14:06:52 CDT)
- Re: Label on Movie (Mon May 26 2008 - 12:02:08 CDT)
- Re: mass weighted rms fit (Sun May 25 2008 - 11:20:56 CDT)
- Re: How to discard certain atoms (Sun May 25 2008 - 07:59:23 CDT)
- Re: Measure gofr with large DCD files (Possibly use bigdcd ???) (Fri May 23 2008 - 18:59:33 CDT)
- Re: Movies using Cygwin's ImageMagick? (Thu May 22 2008 - 09:33:30 CDT)
- Re: Crystal water (Thu May 22 2008 - 05:23:24 CDT)
- Re: scale trajectory coords (Wed May 21 2008 - 22:58:01 CDT)
- Re: your mail (Wed May 21 2008 - 09:17:12 CDT)
- Re: Using NAMD Energy Plugin (Tue May 20 2008 - 07:42:39 CDT)
- Re: plot residues without hydrogen atoms (Tue May 20 2008 - 07:40:19 CDT)
- Re: Color of bond betwen atoms with different colors (Fri May 16 2008 - 16:35:50 CDT)
- Re: Slow tcl/tk script for trajectory analysis (Fri May 16 2008 - 14:46:11 CDT)
- Re: Draw in a new layer problems (Fri May 16 2008 - 10:48:12 CDT)
- Re: membrane builder (Tue May 13 2008 - 17:31:47 CDT)
- Re: Bond lengths from PDB and PSF (Mon May 12 2008 - 17:32:55 CDT)
- Re: 'within' command in VMD (Sun May 11 2008 - 13:22:18 CDT)
- Re: Recompile VMD with larger index types (Sun May 11 2008 - 11:18:17 CDT)
- Re: 'within' command in VMD (Sun May 11 2008 - 03:35:53 CDT)
- Re: Recompile VMD with larger index types (Sat May 10 2008 - 10:19:36 CDT)
- bigdcd v2.0 testers needed... (Wed May 07 2008 - 15:21:47 CDT)
- Re: Writepdb with Solvation Box (Tue May 06 2008 - 13:25:34 CDT)
- Re: memorry problem (Fri May 02 2008 - 15:04:02 CDT)
- Re: problem using pbc wrap (Tue Apr 29 2008 - 06:49:20 CDT)
- Re: Can not enter text in VMD plugin window (Fri Apr 25 2008 - 21:52:12 CDT)
- Re: Rendering Labels with Tachyon (Thu Apr 24 2008 - 17:29:10 CDT)
- Re: Rendering Labels with Tachyon (Thu Apr 24 2008 - 14:45:02 CDT)
- Re: problem with "within" command of VMD (Thu Apr 24 2008 - 08:43:19 CDT)
- Re: resolution screen in Linux (Thu Apr 24 2008 - 08:15:59 CDT)
- Re: measure distance (Wed Apr 23 2008 - 09:04:00 CDT)
- Re: memorry problem (Wed Apr 23 2008 - 06:58:42 CDT)
- Re: bug in the g(r) evaluation? (Tue Apr 22 2008 - 14:32:07 CDT)
- Re: bug in the g(r) evaluation? (Tue Apr 22 2008 - 10:10:35 CDT)
- Re: warnings during plugin build (Tue Apr 22 2008 - 05:39:59 CDT)
- RE: warnings during plugin build (Mon Apr 21 2008 - 18:45:50 CDT)
- RE: warnings during plugin build (Sun Apr 20 2008 - 13:33:29 CDT)
- RE: warnings during plugin build (Sat Apr 19 2008 - 18:40:41 CDT)
- Re: warnings during plugin build (Sat Apr 19 2008 - 09:21:04 CDT)
- Re: RMSD between two structures without the same number of atoms (Fri Apr 18 2008 - 09:20:29 CDT)
- Re: PPMTOMPEG Quality (Thu Apr 17 2008 - 16:23:34 CDT)
- Re: atomselect (Thu Apr 17 2008 - 11:07:27 CDT)
- Re: measure hbonds between protein and water - problem with periodic boundary conditions (Thu Apr 17 2008 - 04:52:29 CDT)
- Re: Trajectory title (Wed Apr 16 2008 - 11:06:05 CDT)
- Re: Timer in VMD (Tue Apr 15 2008 - 18:58:46 CDT)
- Re: catDCD (Mon Apr 14 2008 - 12:08:34 CDT)
- Re: compilation with python 2.5 and file permissions from the CVS repository (Mon Apr 14 2008 - 05:16:19 CDT)
- RE: compilation with python 2.5 and file permissions from the CVS repository (Sun Apr 13 2008 - 15:00:12 CDT)
- Re: compilation with python 2.5 and file permissions from the CVS repository (Sun Apr 13 2008 - 12:58:26 CDT)
- Re: change residue name and write a trajectory file (Thu Apr 10 2008 - 18:19:12 CDT)
- Re: some questions about the RDF plugin (Mon Apr 07 2008 - 16:01:54 CDT)
- Re: some questions about the RDF plugin (Mon Apr 07 2008 - 15:32:29 CDT)
- Re: Insall Problem VMD Linux 1.8.6 Part II! (Sun Apr 06 2008 - 23:50:58 CDT)
- Re: Install problem VMD Linux 1.8.6 (Sun Apr 06 2008 - 20:21:11 CDT)
- Re: About Tcl command (Sun Apr 06 2008 - 00:58:40 CDT)
- Re: How to read specific DCD frames directly in Fortran? (Sat Apr 05 2008 - 18:08:23 CDT)
- Re: Topology file (Fri Apr 04 2008 - 11:52:27 CDT)
- Re: Compiling VMD under Windows XP (Tue Apr 01 2008 - 06:06:22 CDT)
- Re: Compiling VMD under Windows XP (Mon Mar 31 2008 - 21:47:02 CDT)
- Re: using cvs under Windows XP (Mon Mar 31 2008 - 09:37:54 CDT)
- Re: porcupine plot (Mon Mar 31 2008 - 04:01:53 CDT)
- Re: Problems with PDB file format in VMD (Thu Mar 27 2008 - 20:42:45 CDT)
- Re: Tcl 8.5.x in upcoming versions of VMD... (Thu Mar 27 2008 - 18:14:23 CDT)
- Re: Tcl 8.5.x in upcoming versions of VMD... (Thu Mar 27 2008 - 17:32:20 CDT)
- Re: How to see the original Origin (0,0,0, coordinate) of a system (Thu Mar 27 2008 - 11:57:58 CDT)
- Re: problem with pbc (Thu Mar 27 2008 - 07:26:05 CDT)
- Re: Can VMD show the interactions between different structure part? (Thu Mar 27 2008 - 06:43:41 CDT)
- Re: problem with pbc (Thu Mar 27 2008 - 06:06:17 CDT)
- Re: Can VMD show the interactions between different structure part? (Wed Mar 26 2008 - 23:19:40 CDT)
- Re: problem with pbc (Wed Mar 26 2008 - 16:38:07 CDT)
- Re: Can we get secondary structure from PDB files? (Wed Mar 26 2008 - 06:15:42 CDT)
- Re: time correlation function (Tue Mar 25 2008 - 22:56:27 CDT)
- Re: VMD tutorial for working with solid crystals (Tue Mar 25 2008 - 13:38:06 CDT)
- RE: script to read dcd frame-at-a-time & write a selection (Mon Mar 24 2008 - 20:07:35 CDT)
- RE: script to read dcd frame-at-a-time & write a selection (Mon Mar 24 2008 - 19:53:36 CDT)
- RE: script to read dcd frame-at-a-time & write a selection (Mon Mar 24 2008 - 19:22:30 CDT)
- Re: script to read dcd frame-at-a-time & write a selection (Mon Mar 24 2008 - 17:43:28 CDT)
- Re: atoms with changing colors (Thu Mar 20 2008 - 17:05:53 CDT)
- Re: RMSD calc (Thu Mar 20 2008 - 05:37:31 CDT)
- Re: Calculating the Tilt Angle of a non-helical peptide (Wed Mar 19 2008 - 21:52:58 CDT)
- Re: Calculating the Tilt Angle of a non-helical peptide (Wed Mar 19 2008 - 21:07:06 CDT)
- Re: Build a VMD forum? (Wed Mar 19 2008 - 16:08:27 CDT)
- Re: Radial Density (Wed Mar 19 2008 - 11:48:49 CDT)
- Re: dipole (Wed Mar 19 2008 - 07:32:17 CDT)
- Re: Diffusion Constant (Wed Mar 19 2008 - 06:09:56 CDT)
- Re: Diffusion Constant (Tue Mar 18 2008 - 22:59:53 CDT)
- Re: Display bond breaking (Tue Mar 18 2008 - 22:25:27 CDT)
- Re: DLPOLY HISTORY FILE in VMD (Tue Mar 18 2008 - 11:23:31 CDT)
- RE: closewater.tcl (Mon Mar 17 2008 - 16:02:02 CDT)
- Re: GLSL lost (Mon Mar 17 2008 - 13:59:35 CDT)
- RE: different numbers of frames even though... (Fri Mar 14 2008 - 13:05:03 CDT)
- Re: different numbers of frames even though... (Fri Mar 14 2008 - 09:49:00 CDT)
- Re: ramaplot (Fri Mar 14 2008 - 09:37:41 CDT)
- Re: Does VMD support to draw a velocity field diagram? (Thu Mar 13 2008 - 18:03:54 CDT)
- Re: snapshot not compatible with -dispdev text? (Mon Mar 10 2008 - 17:35:52 CDT)
- Re: Automatically zoom so that the protein fill the display (Mon Mar 10 2008 - 13:50:50 CDT)
- Re: pbc join (Sun Mar 09 2008 - 23:57:35 CDT)
- Re: radial density over one frame (Sun Mar 09 2008 - 15:49:17 CDT)
- Re: compile problem for VMD1.8.6: OpenGLRenderer.C (Sat Mar 08 2008 - 20:51:50 CST)
- Re: calculate volume (Sat Mar 08 2008 - 12:29:19 CST)
- Re: how to make smooth movies ? (Fri Mar 07 2008 - 10:40:59 CST)
- Re: Using RMSDTT in a script and aligning volume data (Fri Mar 07 2008 - 10:23:46 CST)
- Re: H2 bond distances calculation n displaying image (Fri Mar 07 2008 - 10:16:05 CST)
- Re: RMSD trajectory Tool (Thu Mar 06 2008 - 07:48:05 CST)
- Re: radial distribution function and number integrals (Wed Mar 05 2008 - 21:54:46 CST)
- Re: radial distribution function and number integrals (Wed Mar 05 2008 - 16:34:14 CST)
- Re: running vmd in parallel (Wed Mar 05 2008 - 12:37:02 CST)
- Re: radial distribution function and number integrals (Wed Mar 05 2008 - 12:45:36 CST)
- Re: VMD languaje information (Tue Mar 04 2008 - 11:57:08 CST)
- Re: missing basic tutorials for VMD scripting? (Sat Mar 01 2008 - 06:49:32 CST)
- Re: unusual bond between the cysteine and arginine residue during the simulation (Fri Feb 29 2008 - 13:47:55 CST)
- Re: no convergence in align (Fri Feb 29 2008 - 09:25:23 CST)
- Re: periodic images for trajectory (Wed Feb 27 2008 - 05:07:04 CST)
- Re: Compute force between two atoms (Tue Feb 26 2008 - 21:42:48 CST)
- Re: more on lammps and VMD coordinates (Tue Feb 26 2008 - 12:08:13 CST)
- Re: control drawing method (Mon Feb 25 2008 - 14:51:57 CST)
- Re: How to get rubber-like surface with Tachyon renderer (Mon Feb 25 2008 - 11:21:09 CST)
- Re: classify and compute the forces between two atoms (Mon Feb 25 2008 - 10:08:44 CST)
- Re: How to get rubber-like surface with Tachyon renderer (Mon Feb 25 2008 - 10:13:33 CST)
- Re: Changing a structure of macromolecule with VMD (Sun Feb 24 2008 - 11:36:04 CST)
- Re: visualizing disulphide bonds (Sun Feb 24 2008 - 06:21:41 CST)
- Re: Ramachandran plot tcl script (Sat Feb 23 2008 - 17:17:38 CST)
- Re: Residue replacement question] (Sat Feb 23 2008 - 17:29:35 CST)
- Re: vmd snapshots without display (Fri Feb 22 2008 - 11:41:19 CST)
- Re: movie generation without runtime frame show (Fri Feb 22 2008 - 06:54:42 CST)
- Re: monitor helicity change (Thu Feb 21 2008 - 22:40:02 CST)
- Re: VASP CHGCAR (Thu Feb 21 2008 - 17:18:50 CST)
- Re: VASP CHGCAR (Thu Feb 21 2008 - 15:35:07 CST)
- Re: couldn't fork child process: not enough memory (Thu Feb 21 2008 - 15:28:16 CST)
- Re: defining bonds (Thu Feb 21 2008 - 15:17:50 CST)
- Re: gromacs trajectory files (Thu Feb 21 2008 - 06:58:52 CST)
- Re: Selection in VMD Graphical representation (Wed Feb 20 2008 - 12:05:29 CST)
- Re: how to set molinfo from python (Tue Feb 19 2008 - 10:49:17 CST)
- Re: tcl script memory problem - NOT in atomselect (Tue Feb 19 2008 - 07:35:20 CST)
- Re: VMD limitation for loading large trajectory file (Fri Feb 15 2008 - 17:00:40 CST)
- Re: Unable to see VDW , CPK representations (Fri Feb 15 2008 - 16:51:34 CST)
- Re: display of periodic DCD information/PBCTOOL (Fri Feb 15 2008 - 12:22:40 CST)
- Re: Volume data formats (Thu Feb 14 2008 - 12:23:56 CST)
- Re: FieldLines (Tue Feb 12 2008 - 09:53:36 CST)
- Re: installation problem vmd 1.8.6 on fedora 3 (Sat Feb 09 2008 - 07:57:27 CST)
- Re: heuristic bond computation (Fri Feb 08 2008 - 08:03:31 CST)
- Re: heuristic bond computation (Thu Feb 07 2008 - 22:16:18 CST)
- Re: vmd maxAtom (Thu Feb 07 2008 - 05:58:14 CST)
- Re: vmd maxAtom (Wed Feb 06 2008 - 10:47:56 CST)
- Re: merge pdb (Wed Feb 06 2008 - 10:41:43 CST)
- Re: namd help? (Tue Feb 05 2008 - 12:54:36 CST)
- Re: Displaying Counter Alongside Animation (Tue Feb 05 2008 - 03:23:44 CST)
- Re: Question about geometrical figures (Fri Feb 01 2008 - 11:28:35 CST)
- Re: Rdf from a specific point (Fri Feb 01 2008 - 11:48:12 CST)
- Re: question about 'measure bond' (Fri Feb 01 2008 - 09:46:30 CST)
- Re: Rdf from a specific point (Fri Feb 01 2008 - 08:55:39 CST)
- Re: animation of an atom diffusion inside a bulk crystal (Fri Feb 01 2008 - 05:01:33 CST)
- Re: Percentage Helicity calculation in VMD (Thu Jan 31 2008 - 23:37:28 CST)
- Re: Sasa script in python returns "Runtime error" (Wed Jan 30 2008 - 10:24:55 CST)
- Re: Sasa script in python returns "Runtime error" (Wed Jan 30 2008 - 10:28:57 CST)
- Re: Sasa script in python returns "Runtime error" (Wed Jan 30 2008 - 09:01:21 CST)
- Re: Sasa script in python returns "Runtime error" (Tue Jan 29 2008 - 11:19:17 CST)
- Re: your mail (Mon Jan 28 2008 - 19:36:38 CST)
- Re: where is the "move" procedure in the toturial (Mon Jan 28 2008 - 09:08:25 CST)
- Re: VMD 1.8.6, XTC format on Mac OS X 10.5.1 (Sat Jan 26 2008 - 13:29:35 CST)
- Re: MSVC Projects Corrupt and Missing (Thu Jan 24 2008 - 22:42:47 CST)
- Re: proximity of residues (Wed Jan 23 2008 - 04:56:19 CST)
- Re: proximity of residues (Wed Jan 23 2008 - 03:49:49 CST)
- Re: delatom "no segment..." (Tue Jan 22 2008 - 05:49:32 CST)
- Re: SSE from the protein sequence (Mon Jan 21 2008 - 09:53:10 CST)
- Re: visualizing a simple polymer chain via VMD (Wed Jan 16 2008 - 12:58:17 CST)
- Re: visualizing a simple polymer chain via VMD (Wed Jan 16 2008 - 12:26:08 CST)
- Re: replace molecule? (Wed Jan 16 2008 - 11:02:32 CST)
- Re: how to load a molecule in pdb format and save in mol2 format in batch mode (Mon Jan 14 2008 - 03:39:58 CST)
- Re: Export VMD graphics to POV-Ray (Fri Jan 11 2008 - 11:59:04 CST)
- Re: Is there any way to diagonalize a 3x3 matrix in VMD,.......... (Wed Jan 09 2008 - 14:54:33 CST)
- Re: connectivity problem (Wed Jan 09 2008 - 10:09:35 CST)
- Re: How to choose part of the volume data for isosurface visualization? (Tue Jan 08 2008 - 11:37:29 CST)
- Re: Question about Gromacs box size in VMD..... (Thu Jan 03 2008 - 08:24:07 CST)
- Re: select atoms between molecules (Wed Jan 02 2008 - 11:46:13 CST)
- Re: Selecting water molecules within 5 ang in a trajectory( generated by amber). (Wed Dec 26 2007 - 14:12:05 CST)
- Re: VMD movie from XYZ coordinate if file has two type of atoms] (Tue Dec 11 2007 - 21:50:14 CST)
- Re: helical construction (Mon Dec 10 2007 - 15:26:30 CST)
- Re: Finding the length of multiple small molecules (Sat Dec 08 2007 - 16:03:07 CST)
- Re: Re: problem with the new cartoon representation mode (Sat Dec 08 2007 - 16:08:22 CST)
- Re: problem with the new cartoon representation mode (Sat Dec 08 2007 - 14:37:00 CST)
- Re: Finding the length of multiple small molecules (Fri Dec 07 2007 - 14:19:47 CST)
- Re: drawing trajectory of a molecule (Fri Dec 07 2007 - 09:20:28 CST)
- Re: Making movies in VMD (Wed Dec 05 2007 - 19:45:54 CST)
- Re: Making movies in VMD (Wed Dec 05 2007 - 19:16:40 CST)
- Re: Render Snapshot from the Tcl console (jpg gif format) (Sun Dec 02 2007 - 20:34:21 CST)
- Re: Timeline viewer (Sat Dec 01 2007 - 18:33:58 CST)
- Re: Timeline viewer (Fri Nov 30 2007 - 15:31:56 CST)
- Re: Command to change background to gradient (Fri Nov 30 2007 - 06:15:44 CST)
- Re: Intersurf and interface residues (Thu Nov 29 2007 - 04:08:08 CST)
- Re: Suspected SpamFR:RE: cave (Mon Nov 26 2007 - 04:28:18 CST)
- RE: cave (Sun Nov 25 2007 - 12:58:47 CST)
- Re: Hydrophobicity plots in VMD (Sun Nov 25 2007 - 12:49:29 CST)
- Re: Delete overlapping residues (Sat Nov 24 2007 - 17:30:22 CST)
- Re: Trying to get VMD to run locally while logged into a remote machine (Wed Nov 21 2007 - 16:35:50 CST)
- Re: Calculate density (Wed Nov 21 2007 - 14:20:15 CST)
- Re: gui RMSD vs text RMSD calcs differ b/c ddiff backbone atom definitions (Sat Nov 17 2007 - 00:11:54 CST)
- Re: vmd 1.8.6 doesn't run on Fedora Core 7 EMT64 (Fri Nov 16 2007 - 23:56:37 CST)
- Re: combine.tcl membrane plugin (Thu Nov 15 2007 - 22:47:21 CST)
- Re: combine.tcl membrane plugin (Thu Nov 15 2007 - 03:33:31 CST)
- RE: OpenGL Display (Wed Nov 14 2007 - 23:53:07 CST)
- Re: combine.tcl membrane plugin (Wed Nov 14 2007 - 20:40:06 CST)
- Re: installed vmd_LINUXIA64 but recieve error : /usr/local/vmd/vmd_LINUX: command not found (Wed Nov 14 2007 - 20:34:06 CST)
- Re: OpenGL Display (Wed Nov 14 2007 - 04:09:40 CST)
- Re: Dynamic bonds and H2 molecules. (Wed Nov 14 2007 - 04:07:00 CST)
- Re: installed vmd_LINUXIA64 but recieve error : /usr/local/vmd/vmd_LINUX: command not found (Tue Nov 13 2007 - 23:50:04 CST)
- Re: problem with colouring the surface with electroststic potential (Tue Nov 13 2007 - 02:15:54 CST)
- Re: stride binaries for windows XP OS (Tue Nov 13 2007 - 02:27:33 CST)
- Re: problems with atomselect: missing selection (Mon Nov 12 2007 - 06:38:01 CST)
- Re: Generatin PSF for alkanes (Sun Nov 11 2007 - 00:54:50 CST)
- Re: merging two pdb files (Thu Nov 08 2007 - 21:55:17 CST)
- Re: merging two pdb files (Thu Nov 08 2007 - 21:50:10 CST)
- Re: molfile reader plugin woes (Thu Nov 08 2007 - 06:44:28 CST)
- Re: merging two pdb files (Thu Nov 08 2007 - 06:39:05 CST)
- Re: cloning a molecule (Mon Nov 05 2007 - 00:35:27 CST)
- Re: NAMD trajectories in VMD (Fri Oct 26 2007 - 12:22:32 CDT)
- Re: Color by Volume on an Intel 945GM (Sat Oct 20 2007 - 15:44:39 CDT)
- Re: how to remove chain id ? (Sat Oct 20 2007 - 14:00:02 CDT)
- Re: how to remove chain id ? (Sat Oct 20 2007 - 08:33:05 CDT)
- Re: Extracting IR spectra from trajectories (Fri Oct 19 2007 - 15:30:50 CDT)
- Re: Is catdcd running on Windows? (Wed Oct 17 2007 - 06:34:45 CDT)
- Re: Problems Opening Large .dx File (Mon Oct 15 2007 - 15:56:28 CDT)
- Re: setting unit cell dimensions (Mon Oct 15 2007 - 03:54:49 CDT)
- Re: VMD access using XWIN32 or X-Deep (Fri Oct 12 2007 - 14:08:30 CDT)
- Re: Cube Files - proportion of the electron density (Tue Oct 09 2007 - 16:40:25 CDT)
- Re: You are right. That's the problem. (Mon Oct 08 2007 - 12:10:07 CDT)
- Re: Normal VMD crashed when pdb load but Debug mode works (Mon Oct 08 2007 - 11:41:09 CDT)
- Re: the representation of within 10 angstrom of a specific point (Sun Oct 07 2007 - 23:48:36 CDT)
- Re: Cube Files - proportion of the electron density (Sun Oct 07 2007 - 18:14:00 CDT)
- Re: NAMDENERGY analysis (Thu Oct 04 2007 - 15:34:32 CDT)
- Re: Installation and running on VMD on Debian Testing System (Wed Oct 03 2007 - 12:42:25 CDT)
- Re: hbonds (how to count) (Wed Oct 03 2007 - 06:29:53 CDT)
- Re: Storing multiple values in the user field (Fri Sep 28 2007 - 16:17:09 CDT)
- behavior of "mol addfile first/last" with non-integer frame numbers (Thu Sep 27 2007 - 19:35:40 CDT)
- Re: atom index number (Thu Sep 27 2007 - 02:42:42 CDT)
- Re: Time series for SASA calculation: (Wed Sep 26 2007 - 20:01:35 CDT)
- Re: residue selection: conflict between resid and residue (Fri Sep 21 2007 - 17:08:32 CDT)
- Re: residue selection: conflict between resid and residue (Fri Sep 21 2007 - 13:15:29 CDT)
- Re: output of distances between atoms or coordinates (Thu Sep 20 2007 - 10:20:08 CDT)
- Re: sidechain correlated motions (Thu Sep 20 2007 - 09:42:59 CDT)
- Re: change the representation of certain atoms which pass a geometric criterion during a movie (Tue Sep 18 2007 - 08:34:29 CDT)
- Re: VMD text mode version (Fri Sep 14 2007 - 10:09:50 CDT)
- Re: Questions abt VMD plugins (Fri Sep 14 2007 - 10:06:06 CDT)
- Re: secondary structure colors in timeline plugin (Fri Sep 14 2007 - 07:46:50 CDT)
- Re: VMD on Playstation 3 (Fri Sep 14 2007 - 07:39:16 CDT)
- Re: Problems with a multiple orbital cube file (Fri Sep 14 2007 - 07:32:14 CDT)
- Re: VMD Images and Movies Tutorial: Working With Trajectories (Thu Sep 13 2007 - 09:04:08 CDT)
- Re: GLSL rendering mode is NOT available (Mon Sep 10 2007 - 09:28:37 CDT)
- Re: Further angle question (Sat Sep 08 2007 - 20:37:28 CDT)
- Re: vmdbasename: Undefined variable (Sat Sep 08 2007 - 20:39:56 CDT)
- Re: Computing angles (Fri Sep 07 2007 - 17:27:26 CDT)
- Re: is it possible to skip frame when using bigdcd (Fri Sep 07 2007 - 07:56:23 CDT)
- Re: the console window is automatically closed without any error messages (Thu Sep 06 2007 - 12:50:08 CDT)
- Re: Solvate package (Wed Sep 05 2007 - 14:05:45 CDT)
- Re: regular expression in Tcl (Tue Sep 04 2007 - 09:12:58 CDT)
- Re: advanced python console (Tue Sep 04 2007 - 09:18:34 CDT)
- Re: Problem with saving coordinate (Fri Aug 31 2007 - 00:17:25 CDT)
- Re: numbonds (Tue Aug 28 2007 - 12:05:46 CDT)
- Re: automating graphic representations (Fri Aug 24 2007 - 13:08:44 CDT)
- Re: Selection within VMD (Wed Aug 22 2007 - 14:12:59 CDT)
- Re: automating graphic representations (Wed Aug 22 2007 - 13:33:03 CDT)
- Re: Selecting the N-closest Waters (Tue Aug 21 2007 - 20:35:16 CDT)
- Re: Selecting the N-closest Waters (Tue Aug 21 2007 - 18:23:55 CDT)
- Re: Selecting the N-closest Waters (Tue Aug 21 2007 - 19:26:57 CDT)
- Re: How to load packages from tcllib into VMD (Tue Aug 21 2007 - 08:13:00 CDT)
- Re: How to load packages from tcllib into VMD (Mon Aug 20 2007 - 18:43:53 CDT)
- Re: Changing the Index values of a molecule (the differenece between gro and pdb files) (Wed Aug 15 2007 - 12:51:30 CDT)
- Re: Very peculiar problem with bigdcd if not running interactively (post moved over from namd forum) (Wed Aug 15 2007 - 10:47:46 CDT)
- Re: Installing VMD to work with MSMS (Tue Aug 14 2007 - 11:31:49 CDT)
- Re: Re: help with badwater script (Mon Aug 13 2007 - 19:08:30 CDT)
- Re: Running a vmd tcl script in the background (Mon Aug 13 2007 - 19:11:53 CDT)
- Re: problem regarding stride (Mon Aug 13 2007 - 11:06:48 CDT)
- Re: VMD plugin error src/webpdbplugin.c (Sun Aug 12 2007 - 18:06:37 CDT)
- Re: gmake invalid option --c install (Sat Aug 11 2007 - 13:46:01 CDT)
- Re: problem regarding stride (Sat Aug 11 2007 - 12:51:55 CDT)
- Re: gmake invalid option --c install (Sat Aug 11 2007 - 11:38:48 CDT)
- RE: bilayer thickness in simulation of POPC membranes (Sat Aug 11 2007 - 11:33:51 CDT)
- Re: how to make user input during runtime of a tcl program using TkConsole? (Fri Aug 10 2007 - 10:20:47 CDT)
- Re: Corrupt cpmd-vmd.pdf File? (Thu Aug 09 2007 - 16:39:02 CDT)
- Re: radial density (Thu Aug 09 2007 - 09:23:39 CDT)
- Re: Writing MolFile plugin for CIF (Wed Aug 08 2007 - 09:40:14 CDT)
- Re: within and exwithin macro (Tue Aug 07 2007 - 15:18:02 CDT)
- Re: CNT Analysis (Tue Aug 07 2007 - 08:54:06 CDT)
- Re: within and exwithin macro (Tue Aug 07 2007 - 08:46:49 CDT)
- Re: within and exwithin macro (Tue Aug 07 2007 - 08:26:18 CDT)
- Re: a problem with installation (to generate the Makefile ) (Tue Aug 07 2007 - 08:15:36 CDT)
- Re: Automatic PSF Builder Help (Mon Aug 06 2007 - 11:29:16 CDT)
- Re: chloroform box (Sun Aug 05 2007 - 12:35:15 CDT)
- Re: Loading files into already-running version of VMD from command prompt (Sat Aug 04 2007 - 16:04:31 CDT)
- Re: chloroform box (Sat Aug 04 2007 - 11:38:10 CDT)
- Re: save state fails (Thu Aug 02 2007 - 10:40:25 CDT)
- Re: eigen values (Thu Aug 02 2007 - 11:51:00 CDT)
- Re: coloring selected chains and residues (Mon Jul 30 2007 - 19:00:55 CDT)
- Re: Tachyon doesn't take into account ColorID (Mon Jul 30 2007 - 14:17:13 CDT)
- Re: PBC problem in gofr (Mon Jul 30 2007 - 08:57:10 CDT)
- Re: can't add packages (Sat Jul 28 2007 - 17:32:46 CDT)
- Re: orientation of hexahedrons parallelepipeds unit cells relative to x,y axes (Sat Jul 28 2007 - 17:24:08 CDT)
- Re: frame number input in tcl and direct mol graph display update (II) (Fri Jul 27 2007 - 13:56:05 CDT)
- Re: Wrap only whole molecules (Fri Jul 27 2007 - 13:26:06 CDT)
- Re: nonstandard solvate + cyclic peptides in explicit DMSO box + gofr (Thu Jul 26 2007 - 11:48:08 CDT)
- Re: deposition simulation from lammps (Thu Jul 26 2007 - 12:53:39 CDT)
- Re: Boundry Dimensions for Solvation (Thu Jul 26 2007 - 11:41:04 CDT)
- Re: how to wrap trajectory into truncated octahedral box (Thu Jul 26 2007 - 11:50:43 CDT)
- Re: ntermolecular atomselection (Thu Jul 26 2007 - 11:35:46 CDT)
- Re: how to run VMD on IBM machines (Wed Jul 25 2007 - 11:04:02 CDT)
- Re: Reading a pdbqt file (generated from AutoDock) (Fri Jul 20 2007 - 00:02:24 CDT)
- Re: Writing out .dcd for discontinous frames (Thu Jul 19 2007 - 06:14:19 CDT)
- Re: Setting modstyle volumeslice options via tk console (Wed Jul 18 2007 - 16:27:47 CDT)
- Re: Language definitions - \usepackage{listings} (Tue Jul 17 2007 - 07:11:54 CDT)
- Re: Regarding APBS calculation in VMD (Tue Jul 17 2007 - 07:43:04 CDT)
- Re: Re: missing cell length on DCD (Sat Jul 14 2007 - 11:42:08 CDT)
- Re: RDF calculations (Fri Jul 13 2007 - 17:38:35 CDT)
- Re: how to save a list in a file (Fri Jul 13 2007 - 13:04:16 CDT)
- Re: exporting xyz file (Thu Jul 12 2007 - 10:37:40 CDT)
- Re: frame number input in tcl and direct mol graph display update (Thu Jul 12 2007 - 10:03:43 CDT)
- Re: exporting xyz file (Thu Jul 12 2007 - 09:58:32 CDT)
- Re: shifting of the origin (Wed Jul 11 2007 - 10:49:47 CDT)
- Re: shifting of the origin (Wed Jul 11 2007 - 09:22:41 CDT)
- Re: displaying velocity from dlpoly history (Tue Jul 10 2007 - 15:07:16 CDT)
- Re: atomselect (Tue Jul 10 2007 - 08:49:38 CDT)
- Re: Using multiple CPUS (Mon Jul 09 2007 - 14:12:00 CDT)
- Re: need help (Mon Jul 09 2007 - 09:25:03 CDT)
- Re: vmd crashes on startup (Fri Jul 06 2007 - 12:51:55 CDT)
- Re: command line dcd to trr? (Fri Jul 06 2007 - 08:26:37 CDT)
- Re: Divide by Zero Error , but can't find the zero! (Thu Jul 05 2007 - 14:53:16 CDT)
- Re: calculation limit of gofr? (Thu Jul 05 2007 - 09:47:43 CDT)
- Re: Video card query (Thu Jul 05 2007 - 09:42:37 CDT)
- Re: Broken tube drawing method? (Thu Jul 05 2007 - 09:24:39 CDT)
- Re: vmd crashes on startup (Wed Jul 04 2007 - 15:55:33 CDT)
- Re: How to display boundary crossing bonds? (Wed Jul 04 2007 - 11:51:57 CDT)
- Re: developing plugins to vmd in python (Tue Jul 03 2007 - 09:25:33 CDT)
- Re: how to calculate hydrogen bond? (Sun Jul 01 2007 - 21:34:56 CDT)
- Re: vmd and amber (Thu Jun 28 2007 - 16:14:49 CDT)
- Re: get charge (Thu Jun 28 2007 - 12:27:43 CDT)
- Re: generate surface figure (Thu Jun 28 2007 - 12:25:30 CDT)
- Re: parallel capabilities (Tue Jun 26 2007 - 16:24:22 CDT)
- Re: parallel capabilities (Tue Jun 26 2007 - 14:14:27 CDT)
- redefining macros vs. update of selections (Mon Jun 25 2007 - 19:28:53 CDT)
- Re: Using VMD just to plot some coordinates from a mathematical/geometrical model (Sat Jun 23 2007 - 09:23:20 CDT)
- Re: Text/Labels on ray tracing external renderer (Fri Jun 22 2007 - 14:26:00 CDT)
- Re: VMD 1.8.6 Not Responding! (Thu Jun 21 2007 - 10:37:44 CDT)
- Re: Script to rendering ANISOU records in VMD (Tue Jun 19 2007 - 22:08:55 CDT)
- Re: VMD 1.8.6 Not Responding! (Mon Jun 18 2007 - 09:49:47 CDT)
- Re: use animatepdbs.tcl to include APBS potential maps (Mon Jun 11 2007 - 11:22:01 CDT)
- Re: use animatepdbs.tcl to include APBS potential maps (Sun Jun 10 2007 - 15:00:58 CDT)
- Re: Python Module (Fri Jun 08 2007 - 08:35:04 CDT)
- Re: release memory in TCL (Thu Jun 07 2007 - 18:59:10 CDT)
- Re: Python Module (Thu Jun 07 2007 - 17:50:14 CDT)
- Re: release memory in TCL (Thu Jun 07 2007 - 17:46:50 CDT)
- Re: traj not visualized but pdb is visualized (Thu Jun 07 2007 - 08:29:33 CDT)
- Re: .xyz file, namelist index too large error (Wed Jun 06 2007 - 19:00:56 CDT)
- Re: release memory in TCL (Wed Jun 06 2007 - 16:35:17 CDT)
- Re: Measuring hbonds between selections from different molecules (Tue Jun 05 2007 - 20:09:49 CDT)
- Re: Measuring hbonds between selections from different molecules (Tue Jun 05 2007 - 19:41:24 CDT)
- Re: Fwd: vmd installation Linux Debian i386 (Tue Jun 05 2007 - 17:43:49 CDT)
- Re: Fwd: Linux installation issue (Tue Jun 05 2007 - 10:00:17 CDT)
- Re: VMD-Main window doesn't load after change in .vmdrc (Mon Jun 04 2007 - 20:12:25 CDT)
- Re: Distance measurement via measure bond (Mon Jun 04 2007 - 10:26:18 CDT)
- Re: parameters file of POPC (Mon Jun 04 2007 - 09:17:02 CDT)
- Re: Installing VMD 1.8.6 (Mon Jun 04 2007 - 08:03:30 CDT)
- Re: Using regular expressions on tcl atomselection (Thu May 31 2007 - 17:17:25 CDT)
- Re: lipid Scd order parameter for a large bilayer (1440 lipids) with a changing bilayer normal (ie. bilayer undulations) (Wed May 30 2007 - 14:14:08 CDT)
- Re: pqr files---- (Tue May 29 2007 - 18:49:38 CDT)
- Re: Installation Error Involving TLC (Mon May 28 2007 - 15:36:40 CDT)
- Re: Problem with bondsrecalc (Mon May 28 2007 - 13:17:22 CDT)
- Re: How to use remote GLSL rendering capabilities? (Mon May 28 2007 - 10:51:07 CDT)
- Re: help on trajectory density map (Mon May 28 2007 - 10:40:12 CDT)
- Re: Fwd: Linux installation issue (Sat May 26 2007 - 15:41:24 CDT)
- Re: Fwd: Linux installation issue (Sat May 26 2007 - 15:36:40 CDT)
- Re: Linux installation issue (Sat May 26 2007 - 15:32:59 CDT)
- Re: problem with installing VMD on a LINUX cluster (Fri May 25 2007 - 17:00:20 CDT)
- Re: Installation Error Involving TLC (Fri May 25 2007 - 13:23:11 CDT)
- Re: (Fri May 25 2007 - 11:00:48 CDT)
- Re: fortran/tcl (Fri May 25 2007 - 10:55:50 CDT)
- Re: How to use remote GLSL rendering capabilities? (Thu May 24 2007 - 17:38:36 CDT)
- Re: VMD installation (Thu May 24 2007 - 16:13:53 CDT)
- Re: Displaying the periodic box ... (Thu May 24 2007 - 09:19:44 CDT)
- Re: questions about developing a plugin (Thu May 24 2007 - 08:19:04 CDT)
- Re: questions about developing a plugin (Thu May 24 2007 - 08:02:33 CDT)
- Re: questions about developing a plugin (Wed May 23 2007 - 16:19:17 CDT)
- Re: Customized radii (Tue May 22 2007 - 12:56:58 CDT)
- Re: show atom number in xyz file (Tue May 22 2007 - 07:33:34 CDT)
- Re: vmd movies in powerpoint (Sun May 20 2007 - 12:23:32 CDT)
- Re: help on writing a tcl script (Sat May 19 2007 - 12:28:29 CDT)
- Re: help on writing a tcl script (Fri May 18 2007 - 11:22:27 CDT)
- Re: Questions on VMD (Thu May 17 2007 - 16:32:05 CDT)
- Re: how to make a movie using Principal Component Analysis (Wed May 16 2007 - 20:16:00 CDT)
- Re: question about making movies (Wed May 16 2007 - 13:39:13 CDT)
- Re: a gas box (Tue May 15 2007 - 08:22:16 CDT)
- Re: GLSL rendering problems (??) (Mon May 14 2007 - 13:03:49 CDT)
- Re: GLSL rendering problems (??) (Mon May 14 2007 - 11:04:34 CDT)
- Re: how to caculate the hydrogen bonds occupancy? (Sun May 13 2007 - 14:46:04 CDT)
- Re: files for air (Fri May 11 2007 - 07:46:23 CDT)
- Re: Fwd: vmd first installation (Fri May 11 2007 - 07:21:43 CDT)
- Re: Consider fluctuating volume for density (Thu May 10 2007 - 09:45:04 CDT)
- Re: a air box (Thu May 10 2007 - 09:22:45 CDT)
- Re: Problem loading pdb file on VMD (Wed May 09 2007 - 19:21:40 CDT)
- Re: Problem loading pdb file on VMD (Wed May 09 2007 - 17:43:45 CDT)
- Re: Fwd: vmd first installation (Wed May 09 2007 - 16:41:10 CDT)
- Re: pbcunwrap, DL_POLY v 3 (Wed May 09 2007 - 07:42:23 CDT)
- Re: Problem loading pdb file on VMD (Wed May 09 2007 - 07:38:54 CDT)
- Re: Problem loading pdb file on VMD (Wed May 09 2007 - 07:37:56 CDT)
- Re: color by frame? (Mon May 07 2007 - 08:47:16 CDT)
- Re: problem using bigdcd.tcl script does not run beyond the first frame no error reported (Mon May 07 2007 - 08:36:50 CDT)
- Re: How to align a protein normal to lipid bilayer (Fri May 04 2007 - 08:53:30 CDT)
- Re: (Thu May 03 2007 - 17:00:48 CDT)
- Re: vmd-1:how to merge two proteins (receptor & ligand) (Thu May 03 2007 - 16:01:46 CDT)
- Re: dumb movie maker question (Thu May 03 2007 - 10:16:10 CDT)
- Re: a water box containing only the absorbent heads of (Thu May 03 2007 - 07:44:05 CDT)
- Re: Problem with periodic condition (Mon Apr 30 2007 - 15:47:12 CDT)
- Re: Visualization and reading problems (Sun Apr 29 2007 - 13:41:54 CDT)
- Re: increase light under depth cueing (Sun Apr 29 2007 - 12:43:19 CDT)
- Re: increase light under depth cueing (Sat Apr 28 2007 - 17:45:36 CDT)
- Re: Problem with periodic condition (Sat Apr 28 2007 - 16:15:06 CDT)
- Re: Problem with periodic condition (Fri Apr 27 2007 - 14:42:33 CDT)
- Re: Dynamic 'Determine file type' list in main menu !?! (Fri Apr 27 2007 - 09:02:09 CDT)
- Re: H-bonds (Tue Apr 24 2007 - 11:28:31 CDT)
- Re: Variable number of atoms in xyz file (Tue Apr 24 2007 - 09:21:45 CDT)
- Re: About openning a file to write in callback function (Mon Apr 23 2007 - 14:00:35 CDT)
- Re: Misunderstanding about SASA (Sat Apr 21 2007 - 17:31:53 CDT)
- Announcement: QM/MM Workshop (Thu Apr 19 2007 - 09:14:50 CDT)
- Re: tcl variable withing variable name (Thu Apr 19 2007 - 08:30:34 CDT)
- Re: vmd can't start up after being installed in linux (Tue Apr 17 2007 - 22:01:27 CDT)
- Re: RE: "which files to make a spatial grid?" => Bug for list command? (Tue Apr 17 2007 - 07:25:11 CDT)
- Re: .xyz to .dcd using catdcd (Mon Apr 16 2007 - 19:51:35 CDT)
- Re: which files to make a spatial grid? (Mon Apr 16 2007 - 19:46:08 CDT)
- Re: writing coordinates of a selection only (Mon Apr 16 2007 - 18:42:26 CDT)
- Re: winvmd error during calculation (Sat Apr 14 2007 - 09:10:39 CDT)
- Re: VMD installation (Fri Apr 13 2007 - 09:40:07 CDT)
- Re: problem using NAMD trajectory in charmm 32-bit, 64-bit etc. (yes, I posted this on charmm lists too) (Tue Apr 03 2007 - 09:20:25 CDT)
- Re: doubts in movie making using vmd. (Wed Mar 28 2007 - 21:47:12 CDT)
- Re: rdf using gui (Tue Mar 27 2007 - 16:44:09 CDT)
- Re: dynamic bonding (Tue Mar 27 2007 - 15:48:22 CDT)
- Re: mol load and mol addfile (Mon Mar 26 2007 - 16:33:51 CDT)
- Re: Re: windows version of VMD (Sun Mar 25 2007 - 16:46:41 CDT)
- Re: Re: Scripting problem with h-bond listing (Sun Mar 18 2007 - 15:03:09 CDT)
- Re: question about gofr (Sat Mar 17 2007 - 15:48:44 CDT)
- Re: read the pdb file using VMD (Tue Mar 06 2007 - 01:30:16 CST)
- Re: reading charmm files (Mon Mar 05 2007 - 11:56:34 CST)
- Re: reading charmm files (Mon Mar 05 2007 - 08:27:12 CST)
- Re: New Molecule (or Load Data) resets viewpoint of Display. Why? (Mon Mar 05 2007 - 05:24:25 CST)
- Re: vmd/gaussian cubes (Fri Mar 02 2007 - 11:48:20 CST)
- Re: Atomselection in NAMDENERGY (Fri Mar 02 2007 - 08:31:54 CST)
- Re: Updating atomselection from frame to frame (Fri Mar 02 2007 - 08:27:07 CST)
- Re: Calculating dipole moment of protein (Fri Mar 02 2007 - 07:41:25 CST)
- Re: Updating atomselection from frame to frame (Fri Mar 02 2007 - 07:32:00 CST)
- Re: Colouring Atoms according to the centro-symmetric parameter (Thu Mar 01 2007 - 13:45:36 CST)
- Re: calculation of free energy between lipid membrane and protein (Thu Mar 01 2007 - 11:40:00 CST)
- Re: multiple dx frames (Wed Feb 28 2007 - 14:42:34 CST)
- Re: Calculate VolMap for every frame by a script (Tue Feb 27 2007 - 17:25:16 CST)
- Re: VMD open GL Display problem (Tue Feb 27 2007 - 11:43:12 CST)
- Re: Re: bug report in VMD 1.8.5 (Mon Feb 26 2007 - 17:26:38 CST)
- Re: Question about RDF of VMD (Sat Feb 24 2007 - 21:25:14 CST)
- Re: "get {x y z}" returns single value (Fri Feb 23 2007 - 11:10:04 CST)
- Re: transparent background in vmd (Fri Feb 23 2007 - 10:49:56 CST)
- Re: Number of Frames in VMD (Fri Feb 23 2007 - 09:05:15 CST)
- Re: cube file: coordinates rotated (Thu Feb 22 2007 - 09:07:28 CST)
- Re: Re: namd-l: Nanopore simulation (Wed Feb 21 2007 - 12:06:08 CST)
- Re: Isosurface rendering (Wed Feb 21 2007 - 11:54:12 CST)
- Re: Isosurface rendering (Wed Feb 21 2007 - 09:44:21 CST)
- Re: generating (Tue Feb 20 2007 - 14:45:27 CST)
- Re: generating (Tue Feb 20 2007 - 09:05:44 CST)
- Re: TCl question: preventing STDOUT (Thu Feb 15 2007 - 06:37:36 CST)
- Re: atomselection: number of residues (Sun Feb 11 2007 - 13:41:08 CST)
- Re: hot keys & save state (Sun Feb 11 2007 - 13:06:08 CST)
- Re: VMD-1.8.5: GLSL & NVidia troubles + fixed previous Spaceball problem (Sun Feb 11 2007 - 12:51:06 CST)
- Re: load in multiple files once (Fri Feb 09 2007 - 16:30:00 CST)
- Re: Saving work in VMD--this seems ridiculously difficult! (Fri Feb 09 2007 - 10:52:01 CST)
- Re: file "top_all22_prot.inp" (Wed Feb 07 2007 - 09:49:39 CST)
- Re: Regarding com file error (Mon Feb 05 2007 - 12:20:12 CST)
- Re: Saving mutli-molecule structures in VMD (e.g., for building membranes) (Mon Feb 05 2007 - 12:09:15 CST)
- Re: Units for Measure Dipole (Mon Feb 05 2007 - 12:04:12 CST)
- Re: Error while running scripts: terminate called after throwing an instance of 'std::bad_alloc' (Sat Feb 03 2007 - 06:31:49 CST)
- Re: Units for Measure Dipole (Fri Feb 02 2007 - 18:28:15 CST)
- Re: Atomselect on several molecules (Fri Feb 02 2007 - 13:36:13 CST)
- Re: Atomselect on several molecules (Fri Feb 02 2007 - 11:19:06 CST)
- Re: sending arguments to tcl (Thu Feb 01 2007 - 15:55:30 CST)
- Re: Compute the angle between a vector and the largest inertia axis (Tue Jan 30 2007 - 11:16:32 CST)
- RE: Delete frames in a script (Tue Jan 30 2007 - 11:13:14 CST)
- Re: Re: Add transparent plane to molecular structure (Tue Jan 30 2007 - 11:04:27 CST)
- Re: Add transparent plane to molecular structure (Mon Jan 29 2007 - 21:31:50 CST)
- Re: an old...old..old..question (Mon Jan 29 2007 - 18:33:14 CST)
- Re: history in tcl/tk script (Mon Jan 29 2007 - 09:12:13 CST)
- Re: history in tcl/tk script (Fri Jan 26 2007 - 10:39:02 CST)
- Re: wildcards in atomselect command (Fri Jan 26 2007 - 10:03:14 CST)
- Re: Installing VMD on a PC (Wed Jan 24 2007 - 19:49:17 CST)
- Re: question on spin density (Wed Jan 24 2007 - 17:14:53 CST)
- RE: measure XYZ dimensions of a system (Wed Jan 24 2007 - 13:52:43 CST)
- Re: measure XYZ dimensions of a system (Wed Jan 24 2007 - 12:13:42 CST)
- Re: vector (Wed Jan 24 2007 - 10:26:55 CST)
- Re: hingefind (Tue Jan 23 2007 - 11:23:17 CST)
- Re: hingefind (Mon Jan 22 2007 - 19:27:05 CST)
- Re: renumbering residues after deletion of atoms (Thu Jan 18 2007 - 11:51:48 CST)
- Re: scripts in windows version (Wed Jan 17 2007 - 14:47:48 CST)
- Re: [Fwd: Re: create new topology file for new molecule] (Wed Jan 10 2007 - 08:39:17 CST)
- Re: Why does lipid move out of water box (Tue Jan 09 2007 - 14:13:08 CST)
- Re: Unaligned access to ... (Mon Jan 08 2007 - 19:10:39 CST)
- Re: Anyone have catdcd-4.0 for BlueGene? (Mon Jan 08 2007 - 16:36:38 CST)
- Re: error message using gofr (Fri Jan 05 2007 - 18:09:22 CST)
- Re: Save coordinates from MD simulation (Thu Jan 04 2007 - 11:46:39 CST)
- Re: Install and Configure Problems (Wed Jan 03 2007 - 09:43:38 CST)
- Re: VMD 1.8.5 installed. The graphics flashed and disappeared after installation. (Tue Dec 19 2006 - 14:15:00 CST)
- Re: electrostatic potential (Wed Dec 13 2006 - 15:11:27 CST)
- Re: Getting coordinates (Tue Dec 05 2006 - 16:37:00 CST)
- Re: duration of video mpeg (Sun Dec 03 2006 - 16:31:58 CST)
- Re: duration of video mpeg (Sun Dec 03 2006 - 09:39:28 CST)
- RE: radius of the curvature (Wed Nov 29 2006 - 12:31:59 CST)
- Re: radius of the curvature (Tue Nov 28 2006 - 16:08:29 CST)
- Re: CAve Question (Mon Nov 27 2006 - 18:47:22 CST)
- Re: movie making (Thu Nov 23 2006 - 15:36:32 CST)
- Re: Installing VMD Windows version on 64-bit Windows Environment (Wed Nov 22 2006 - 09:19:03 CST)
- Re: vector summation (Wed Nov 22 2006 - 09:13:45 CST)
- Re: Running a script using text mode (Tue Nov 21 2006 - 12:18:02 CST)
- Re: changing the representation of a vector (Fri Nov 17 2006 - 11:02:42 CST)
- Re: Change properties of representations - batch mode (Fri Nov 17 2006 - 10:47:02 CST)
- Re: how to extract atom information? (Thu Nov 16 2006 - 21:32:41 CST)
- Re: how to extract atom information? (Thu Nov 16 2006 - 20:08:01 CST)
- Re: Plotting Number of Hbonds and % Helicity with Time (Sat Nov 11 2006 - 18:57:25 CST)
- Re: Command line troubles (Sat Nov 11 2006 - 17:48:00 CST)
- Re: VMD installation problem (Fri Nov 10 2006 - 11:19:24 CST)
- Re: VMD - unable to create OpenGL (Tue Nov 07 2006 - 08:37:37 CST)
- Re: How to delete selected atoms from a molecule (Mon Nov 06 2006 - 09:30:58 CST)
- Re: installation problem (Tue Oct 31 2006 - 18:32:13 CST)
- Re: VMD - ATI video card (Tue Oct 31 2006 - 13:47:10 CST)
- Re: Reading box info. from PQR file (Mon Oct 30 2006 - 10:54:13 CST)
- Re: problem about "mol load psf md.pdf pdb md.pdb" (Wed Oct 25 2006 - 06:19:41 CDT)
- Re: adding selections (Fri Oct 20 2006 - 14:03:56 CDT)
- Re: CPK Graphical Representation (Fri Oct 20 2006 - 11:48:23 CDT)
- Re: How to use vector calculation ??? (Fri Oct 20 2006 - 10:45:11 CDT)
- Re: CPK Graphical Representation (Fri Oct 20 2006 - 10:40:46 CDT)
- Re: Using VMDPLUGIN_register_tcl (Wed Oct 18 2006 - 11:49:55 CDT)
- Re: update of atom selection at each step for trajectories (Wed Oct 18 2006 - 12:09:04 CDT)
- Re: electrostatic map render problem (Wed Oct 18 2006 - 11:56:21 CDT)
- Re: Using VMDPLUGIN_register_tcl (Wed Oct 18 2006 - 11:52:36 CDT)
- Re: Re: Volumetric data: Periodic expansion does not work; why? (Tue Oct 17 2006 - 11:08:49 CDT)
- Re: RPM spec file (Tue Oct 17 2006 - 11:04:37 CDT)
- Re: Volumetric data: Periodic expansion does not work; why? (Fri Oct 13 2006 - 11:15:36 CDT)
- Re: gofr (Wed Oct 11 2006 - 14:46:15 CDT)
- Re: Missing main menu (Mon Oct 09 2006 - 13:56:52 CDT)
- Re: Access to bond information inside a VMD plugin... (Mon Oct 09 2006 - 12:14:55 CDT)
- Re: Question about measure gofr (Fri Oct 06 2006 - 12:54:58 CDT)
- Re: problem viewing cube files (Thu Oct 05 2006 - 10:51:17 CDT)
- Re: problem viewing cube files (Wed Oct 04 2006 - 08:26:45 CDT)
- Re: problem running pgn script file (Tue Oct 03 2006 - 11:11:45 CDT)
- Re: Connectivity lost when loading second pdb (Tue Oct 03 2006 - 08:07:39 CDT)
- Re: sequential multiple structures (Fri Sep 29 2006 - 07:25:23 CDT)
- Re: problem using saltbr plugin in text mode (Wed Sep 27 2006 - 14:00:28 CDT)
- Re: VMD Prompt (Wed Sep 27 2006 - 13:20:46 CDT)
- Re: 1.8.5: VASP plugin not correct (Tue Sep 26 2006 - 09:33:45 CDT)
- Re: What unit system does VMD use? (Mon Sep 25 2006 - 12:00:07 CDT)
- Re: 1.8.5: VASP plugin not correct (Mon Sep 25 2006 - 11:44:23 CDT)
- Re: visualizing charges (Mon Sep 25 2006 - 10:01:46 CDT)
- Re: 1.8.5: VASP plugin not correct (Mon Sep 25 2006 - 08:45:26 CDT)
- Re: measure angle between three points in space (Sun Sep 24 2006 - 10:40:06 CDT)
- Re: What unit system does VMD use? (Sat Sep 23 2006 - 21:03:01 CDT)
- Re: What unit system does VMD use? (Fri Sep 22 2006 - 18:29:23 CDT)
- Re: visualizing charges (Fri Sep 22 2006 - 14:18:16 CDT)
- Re: What unit system does VMD use? (Thu Sep 21 2006 - 19:41:58 CDT)
- Re: Paratool Problem (Thu Sep 21 2006 - 14:42:15 CDT)
- Re: VMD won't make mpg out of my trajectory (Wed Sep 20 2006 - 15:12:13 CDT)
- Re: VMD won't make mpg out of my trajectory (Wed Sep 20 2006 - 14:00:56 CDT)
- Re: measure bond length? (Tue Sep 19 2006 - 12:03:23 CDT)
- Re: rmsf (Tue Sep 19 2006 - 11:07:26 CDT)
- Re: problem with -args in text mode (Mon Sep 18 2006 - 14:19:28 CDT)
- Re: problem with -args in text mode (Fri Sep 15 2006 - 23:34:41 CDT)
- Re: DPPC Bilayer Size (Thu Sep 14 2006 - 18:26:45 CDT)
- Re: manually defining bonds, setting atom colors (Thu Sep 14 2006 - 16:39:36 CDT)
- Re: Finding residues involved in Hbonds. (Thu Sep 14 2006 - 13:12:56 CDT)
- Re: drawing of direction vectors for conformational transition (Thu Sep 14 2006 - 11:25:47 CDT)
- Re: puts format (Wed Sep 13 2006 - 16:43:31 CDT)
- Re: rdf plugin in vmd 1.85 (Wed Sep 13 2006 - 14:24:10 CDT)
- Re: drawing of direction vectors for conformational transition (Wed Sep 13 2006 - 14:18:03 CDT)
- Re: antialiasing (Wed Sep 13 2006 - 14:10:30 CDT)
- Re: antialiasing (Wed Sep 13 2006 - 13:56:38 CDT)
- Re: saving charges in the B column (Fri Sep 08 2006 - 19:27:52 CDT)
- Re: protein in membrane (Fri Sep 08 2006 - 18:12:02 CDT)
- Re: Min. Image Convention after Translation & Rotation (Fri Sep 08 2006 - 14:00:58 CDT)
- Re: dipole moment (Fri Sep 08 2006 - 12:13:29 CDT)
- Re: dipole moment (Fri Sep 08 2006 - 12:10:54 CDT)
- Re: How to use bigdcd in vmd batch mode? (Fri Sep 08 2006 - 12:04:35 CDT)
- Re: Min. Image Convention after Translation & Rotation (Thu Sep 07 2006 - 20:08:45 CDT)
- Re: pass variables from the shell to VMD (Thu Sep 07 2006 - 11:51:01 CDT)
- Re: slicing (Wed Sep 06 2006 - 11:46:23 CDT)
- Re: dynamical list of atoms (Wed Sep 06 2006 - 10:54:30 CDT)
- Re: imposing period boundary conditions in a simulation with a crystal (Wed Sep 06 2006 - 09:23:39 CDT)
- Re: Matrix inverse (Tue Sep 05 2006 - 18:39:22 CDT)
- Re: Matrix inverse (Tue Sep 05 2006 - 18:18:10 CDT)
- Re: imposing period boundary conditions in a simulation with a crystal (Tue Sep 05 2006 - 12:00:19 CDT)
- Re: Warning: poorly guessed coordinates using PsfGen (Tue Sep 05 2006 - 10:53:35 CDT)
- Re: qsub (torque/maui) and vmd (Mon Sep 04 2006 - 14:00:38 CDT)
- Re: radial pair distribution function: molecule/water? (Mon Sep 04 2006 - 12:14:28 CDT)
- Re: qsub (torque/maui) and vmd (Mon Sep 04 2006 - 11:18:05 CDT)
- Re: looking for VMD draw scripts. (Fri Sep 01 2006 - 16:52:51 CDT)
- looking for VMD draw scripts. (Fri Sep 01 2006 - 15:34:59 CDT)
- Re: output file format (Fri Sep 01 2006 - 15:01:50 CDT)
- Re: Where did I put those angles? (Thu Aug 31 2006 - 17:51:43 CDT)
- Re: problem with vecsub, help with Tcl Script (Thu Aug 31 2006 - 12:59:32 CDT)
- Re: output file format (Thu Aug 31 2006 - 10:52:13 CDT)
- Re: Counting H-bonds from a dcd file (Tue Aug 29 2006 - 19:16:19 CDT)
- Re: Counting H-bonds from a dcd file (Tue Aug 29 2006 - 17:42:56 CDT)
- Re: A error of " transforming dcd into pdb " (Tue Aug 29 2006 - 11:55:49 CDT)
- Re: loading gzipped trajectories into vmd (Tue Aug 29 2006 - 11:09:10 CDT)
- Re: Problem with vmdsphere.frag shader (Mon Aug 28 2006 - 12:32:16 CDT)
- Re: water numbering (Mon Aug 28 2006 - 11:41:53 CDT)
- Re: gyration radius for a trajectory (Fri Aug 25 2006 - 09:40:54 CDT)
- Re: animated gif option in VMD for Windows. (Thu Aug 24 2006 - 14:45:53 CDT)
- Re: Unexpected End-of-file? (Wed Aug 23 2006 - 23:59:52 CDT)
- Re: PRODRG generated .gro file (Tue Aug 22 2006 - 21:51:42 CDT)
- Re: problems with autoionize (Tue Aug 22 2006 - 18:10:54 CDT)
- Re: (Tue Aug 22 2006 - 07:46:27 CDT)
- Re: Load (Thu Aug 17 2006 - 14:12:56 CDT)
- Re: Question About Tcl variables (Wed Aug 16 2006 - 19:36:28 CDT)
- Re: visualization code (Thu Aug 10 2006 - 00:00:11 CDT)
- Re: Which VMD executible to use? (Tue Aug 08 2006 - 10:54:22 CDT)
- Re: water model used for the waterbox in VMD (Tue Aug 08 2006 - 09:22:13 CDT)
- Re: To display only certain regions of the .dx map in VMD (Mon Aug 07 2006 - 13:35:43 CDT)
- Re: Atom selection based on arbitrary columns in the pdb file (Sat Aug 05 2006 - 12:05:51 CDT)
- Re: select only border of the water box (Fri Aug 04 2006 - 07:01:53 CDT)
- Re: Cannot run IED! :( (Thu Aug 03 2006 - 10:37:14 CDT)
- Re: VASP plugins (Thu Aug 03 2006 - 09:42:01 CDT)
- Re: Altering Definition of Molecular Coloring Method (Tue Aug 01 2006 - 07:29:44 CDT)
- Re: rendering..... (Mon Jul 31 2006 - 17:58:57 CDT)
- Re: Re: RDF.tcl (Fri Jul 28 2006 - 17:28:49 CDT)
- Re: where is option "Image Smoothing"? (Wed Jul 26 2006 - 06:31:32 CDT)
- Re: Rendering surfaces from PLT files (Mon Jul 24 2006 - 11:43:42 CDT)
- Re: Rendering surfaces from PLT files (Sun Jul 23 2006 - 00:30:08 CDT)
- Re: some parameters for TIP3P (Fri Jul 21 2006 - 18:25:19 CDT)
- Re: some parameters for TIP3P (Fri Jul 21 2006 - 16:38:07 CDT)
- Re: Mesa rendering (Thu Jul 20 2006 - 08:27:31 CDT)
- Re: "Unable to create OpenGL window" (Tue Jul 18 2006 - 15:41:35 CDT)
- Re: residue no. greater than 9999 in pdb files created with VMD (Wed Jul 12 2006 - 11:42:42 CDT)
- Re: please, give me a tip (Tue Jul 11 2006 - 11:24:20 CDT)
- Re: lammps and vmd (Tue Jul 11 2006 - 11:21:19 CDT)
- Re: movies on a mac (Mon Jul 03 2006 - 11:30:24 CDT)
- Re: Volume slices of Gaussian Cube Files: Color scale (Thu Jun 29 2006 - 17:50:24 CDT)
- Re: Correlated motion (Wed Jun 28 2006 - 14:51:52 CDT)
- Re: How to color the atoms based on the stress (Wed Jun 28 2006 - 05:46:21 CDT)
- Re: VMD crashed due to: vmd_LINUXAMD64: indirect_vertex_array.c:659: emit_DrawArrays_old: Assertion `elements_per_request >= count' failed (Tue Jun 27 2006 - 22:17:01 CDT)
- Re: VMD crashed due to: vmd_LINUXAMD64: indirect_vertex_array.c:659: emit_DrawArrays_old: Assertion `elements_per_request >= count' failed (Tue Jun 27 2006 - 19:53:00 CDT)
- Re: Tcl commands on Mac (Mon Jun 26 2006 - 18:32:57 CDT)
- Re: GLSL Compile Error (VMD 1.8.4, Nvidia Driver 8762) (Mon Jun 26 2006 - 06:28:22 CDT)
- Re: bond information in psf file (Sat Jun 24 2006 - 22:51:13 CDT)
- Re: animate with varying atom numbers (Sat Jun 10 2006 - 04:55:47 CDT)
- Re: color protein based on an event during a trajectory (Wed Jun 07 2006 - 23:24:40 CDT)
- Re: how to make movies from HISTORY file (Wed Jun 07 2006 - 07:01:03 CDT)
- Re: Compilation (Thu May 25 2006 - 05:20:42 CDT)
- RE: change default drawing and coloring method (Thu May 25 2006 - 05:06:12 CDT)
- Re: color by charge (can colors be changed?) (Thu May 25 2006 - 05:02:29 CDT)
- RE: Gaussian Cube file with VMD (Tue May 23 2006 - 15:34:04 CDT)
- Re: change default drawing and coloring method (Mon May 22 2006 - 23:29:51 CDT)
- Re: Gaussian Cube file with VMD (Mon May 22 2006 - 23:25:18 CDT)
- Re: bug in membrane plugin (Mon May 15 2006 - 13:44:00 CDT)
- Re: Plugin compilation (Mon May 15 2006 - 13:07:50 CDT)
- Re: secondary structure assignment (Mon May 15 2006 - 04:52:05 CDT)
- Re: How to select water near a certain residue if it is outside of the water box? (Sat May 13 2006 - 18:11:27 CDT)
- Re: high resolution images (Thu May 11 2006 - 18:18:10 CDT)
- Re: renderman output? (Wed May 10 2006 - 19:37:19 CDT)
- Re: Fwd: How to pick up the lost periodic information? (Mon May 08 2006 - 11:46:49 CDT)
- Re: plotting x y z data (Thu May 04 2006 - 07:01:39 CDT)
- Re: search path and naming conventions for custom TCL scripts (Wed May 03 2006 - 10:29:29 CDT)
- Re: coordinates of an atom (Tue May 02 2006 - 11:22:22 CDT)
- Re: hiding and renaming of graphical objects (Fri Apr 28 2006 - 12:32:59 CDT)
- Re: VMD-L: how to select water molecules between two residues in a trajectory. (Mon Apr 17 2006 - 11:33:38 CDT)
- Re: VMD-L: how to select water molecules between two residues in a trajectory. (Mon Apr 17 2006 - 10:50:38 CDT)
- Re: VMD-L: how to select water molecules between two residues in a trajectory. (Sat Apr 15 2006 - 20:31:11 CDT)
- Re: distances (Tue Apr 11 2006 - 14:11:13 CDT)
- Re: WARNING: Coordinates will be rotated to comply ... (Tue Apr 04 2006 - 14:26:01 CDT)
- Re: extracting values from a dx file (Thu Mar 23 2006 - 20:22:21 CST)
- Re: Strange GLSL rendering (Tue Mar 14 2006 - 09:12:33 CST)
- Re: VMD script (Tue Mar 14 2006 - 08:20:53 CST)
- Re: VMD script (Mon Mar 13 2006 - 18:40:14 CST)
- Re: Convert an ascii matrix to an image (Sat Mar 11 2006 - 16:25:18 CST)
- Re: pbc and vmd (Tue Mar 07 2006 - 09:55:27 CST)
- Re: pbc and vmd (Mon Mar 06 2006 - 01:01:20 CST)
- Re: color scale data range (Mon Feb 27 2006 - 08:20:34 CST)
- Re: Mapping electronic potential to surface (Thu Feb 23 2006 - 22:47:20 CST)
- Re: Mapping electronic potential to surface (Thu Feb 23 2006 - 00:55:53 CST)
- Re: Problem installation on RedHat (Tue Feb 21 2006 - 01:10:52 CST)
- Re: Problem with Hg, H (Mon Feb 20 2006 - 19:13:49 CST)
- Re: vmd 1.8.b does not start up (Thu Feb 16 2006 - 22:11:29 CST)
- fortran bindings for molfile library (Wed Feb 15 2006 - 09:31:54 CST)
- Re: Problem with VMD 'animate' command (Sun Feb 12 2006 - 20:00:46 CST)
- Re: uncompress files in tcl script (Thu Feb 09 2006 - 12:20:44 CST)
- Re: vmd-1.8.4b10/Linux amd64 only libstdc++.so.6 dependancy (Thu Feb 09 2006 - 06:16:54 CST)
- Re: analysis script causes vmd to crash (Thu Feb 02 2006 - 22:03:15 CST)
- Re: Can't load a large dcd? (Thu Jan 26 2006 - 07:09:22 CST)
- Re: Can't load a large dcd? (Wed Jan 25 2006 - 10:52:41 CST)
- Re: Changing Graphical Representations (Wed Jan 25 2006 - 06:53:15 CST)
- Re: Changing Default Settings for VMD Main Window (Thu Jan 19 2006 - 08:02:47 CST)
- Re: [vmd] max number of molecules on mac (Tue Jan 17 2006 - 06:32:23 CST)
- Re: Trouble installing VMD (Tue Jan 10 2006 - 23:37:14 CST)
- Re: loading a new molecule without changing the view (Fri Jan 06 2006 - 14:05:40 CST)
- Re: animate transparency (Fri Jan 06 2006 - 07:07:43 CST)
- Re: Building a sphere of atoms around a chosen atom (Tue Jan 03 2006 - 05:03:53 CST)
- Re: changing default sec struct colors (Mon Jan 02 2006 - 16:12:46 CST)
- Re: installation problem on solaris 9 (Sat Dec 31 2005 - 09:42:53 CST)
- Re: breaking a big dcd file (Tue Dec 20 2005 - 18:58:28 CST)
- Re: message in the console (Mon Dec 19 2005 - 14:59:27 CST)
- Re: hbonds count (Wed Nov 30 2005 - 09:22:16 CST)
- Re: How to efficiently update a surface (Tue Nov 29 2005 - 13:11:17 CST)
- Re: Changing colors (Mon Nov 28 2005 - 14:56:54 CST)
- Re: s-s bond in vmd not visualized (Wed Nov 23 2005 - 11:31:57 CST)
- Re: calculate rmsd in a loop:feedback [sorry if you get it twice] (Fri Nov 18 2005 - 08:54:02 CST)
- Re: calculate rmsd in a loop:feedback [sorry if you get it twice] (Thu Nov 17 2005 - 06:20:35 CST)
- Re: load two or more molecuoles at one time (Wed Nov 16 2005 - 16:21:35 CST)
- illegal mouse mode (Fri Nov 11 2005 - 13:33:13 CST)
- Re: psfgen vs. x-plor (Wed Nov 09 2005 - 02:12:36 CST)
- Re: IRIX6 build from CVS (Tue Nov 08 2005 - 07:01:51 CST)
- Re: saving macros (Wed Nov 02 2005 - 08:43:58 CST)
- Re: Cannot load Gromos96 trajectory file (attached) (Mon Oct 17 2005 - 19:37:14 CDT)
- Re: making a movie (Thu Oct 13 2005 - 10:49:25 CDT)
- Re: binning data for each frame and coordinate (Wed Oct 12 2005 - 13:34:37 CDT)
- Re: Import gromos output file into VMD without format conversion? (Thu Sep 22 2005 - 07:32:55 CDT)
- Re: problem with coloring surface by electrostatic potential (Tue Sep 20 2005 - 14:17:54 CDT)
- Re: counting selected atoms---selection time series (Thu Sep 01 2005 - 01:16:43 CDT)
- Re: Problems with AMBER trajectories (MOVIE!) and crd-files (Tue Aug 30 2005 - 13:43:29 CDT)
- Re: VMD fails to run (Sun Aug 21 2005 - 06:05:53 CDT)
- Re: residue numbering TCL versus PDB (Fri Jul 29 2005 - 02:13:59 CDT)
- Re: tcl syntax problem (Wed Jul 27 2005 - 15:09:23 CDT)
- Re: residue numbering TCL versus PDB (Wed Jul 27 2005 - 07:36:48 CDT)
- Re: VMD running slow (Mon Jul 25 2005 - 15:18:27 CDT)
- Re: Coloring by BETA not updating per frame (Sun Jul 24 2005 - 02:29:44 CDT)
- Re: exclude residues (Thu Jun 30 2005 - 15:54:32 CDT)
- Re: do not compute/draw bonds? (Thu Jun 23 2005 - 12:26:44 CDT)
- Re: phi and psi information (Thu Jun 23 2005 - 04:09:59 CDT)
- Re: VMD 1.8.4 test builds, 32-bit and 64-bit AIX5... (Thu Jun 23 2005 - 02:34:26 CDT)
- Re: Script for automated selection (Mon Jun 20 2005 - 12:58:41 CDT)
- Re: namd-l: Re: multiple automated calls to NAMD (Fri Jun 10 2005 - 02:17:32 CDT)
- Re: multiple automated calls to NAMD (Thu Jun 09 2005 - 02:38:35 CDT)
- Re: Change representation default from lines to points (Thu Jun 02 2005 - 10:08:24 CDT)
- Re: loading amber file (Wed Jun 01 2005 - 01:32:33 CDT)
- Re: Open diff pdbs with diff # of atoms? (Sat May 14 2005 - 02:04:23 CDT)
- RE: Rama plot (Tue May 10 2005 - 01:53:57 CDT)
- Re: writing DCD files (Fri May 06 2005 - 07:00:05 CDT)
- RE: color the surface with electrostatic potential value (Thu Apr 28 2005 - 01:12:24 CDT)
- Re: Re:Re:missing bond problem (Wed Apr 27 2005 - 10:01:50 CDT)
- Re: bond missimg (Mon Apr 25 2005 - 08:47:20 CDT)
- Re: Sphere size (Sat Apr 23 2005 - 06:22:25 CDT)
- Re: dcd large files, charmm-VMD (Fri Apr 22 2005 - 11:53:25 CDT)
- Re: compressed trajectory support (Mon Apr 18 2005 - 12:47:01 CDT)
- Re: compressed trajectory support (Mon Apr 18 2005 - 10:38:14 CDT)
- Re: "Draw" different things in different frames (Sun Apr 17 2005 - 03:07:11 CDT)
- Re: a question about get the coordinates in vector form (Fri Apr 15 2005 - 16:19:25 CDT)
- Re: CA-CA distances in a trayectory (Thu Apr 14 2005 - 09:07:57 CDT)
- Re: Customizing VMD Sessions (Thu Apr 14 2005 - 08:45:00 CDT)
- Re: Customizing VMD Sessions (Thu Apr 14 2005 - 05:39:38 CDT)
- Re: only vmd console (Wed Apr 13 2005 - 04:43:07 CDT)
- Re: mpg image speed (Mon Apr 11 2005 - 17:08:05 CDT)
- Re: vmd movie maker (Sun Apr 03 2005 - 03:11:22 CDT)
- Re: about adding ions to an ion channel pore (Fri Apr 01 2005 - 01:46:50 CST)
- Re: Maximum numbers of atoms (Wed Mar 30 2005 - 05:06:49 CST)
- Re: GRD file format (Wed Mar 23 2005 - 01:33:31 CST)
- Re: GRD file format (Tue Mar 22 2005 - 13:15:35 CST)
- Re: vmd installation in rehdat7.3 (Tue Mar 22 2005 - 02:01:52 CST)
- Re: VMD, NAMD and Interactive Essential Dynamics (IED) (Mon Mar 21 2005 - 12:22:52 CST)
- Re: install 1.8.3 on RHEL4 (Fri Mar 18 2005 - 15:45:06 CST)
- Re: VMD, NAMD and Interactive Essential Dynamics (IED) (Wed Feb 23 2005 - 14:29:22 CST)
- Re: Catching error info before it shuts down ... (Fri Feb 18 2005 - 03:39:48 CST)
- Re: determining vdw, elec, and others (Thu Feb 17 2005 - 03:43:21 CST)
- Re: Defining Bonds in .xyz file format (Wed Feb 16 2005 - 06:09:46 CST)
- Re: How to image molecules back into a PBC box? (Wed Feb 16 2005 - 06:02:17 CST)
- Re: slowing the movie animation (Mon Feb 14 2005 - 03:45:59 CST)
- Re: Distance calculation in TkConsole (Thu Feb 10 2005 - 07:44:33 CST)
- Re: volume shading in 1.8.3b1 ? (Mon Feb 07 2005 - 14:27:53 CST)
- Re: using gimp for converting jpg, tga ... images to high quality eps files (Mon Feb 07 2005 - 06:31:44 CST)
- Re: using gimp for converting jpg, tga ... images to high quality eps files (Sat Feb 05 2005 - 04:58:35 CST)
- Re: variable atom count in XYZ multiframe trajectory (Tue Feb 01 2005 - 13:59:08 CST)
- Re: Re: vmd not starting up on Fedora core 3 linux , nVidia quadro 980 XGL, nVidia 6629 driver (Tue Jan 11 2005 - 10:50:57 CST)
- Re: Periodic box display feature suggestion (Mon Jan 10 2005 - 15:00:47 CST)
- Re: Cluster Analysis given a dcd trajectory (Sat Jan 08 2005 - 13:28:55 CST)
- Re: vmd not starting up on Fedora core 3 linux , nVidia quadro 980 XGL, nVidia 6629 driver (Fri Jan 07 2005 - 07:20:17 CST)
- Re: vmd not starting up on Fedora core 3 linux , nVidia quadro 980 XGL, nVidia 6629 driver (Fri Jan 07 2005 - 06:37:21 CST)
- Re: vmd not starting up on Fedora core 3 linux , nVidia quadro 980 XGL, nVidia 6629 driver (Fri Jan 07 2005 - 05:40:13 CST)
- Re: vmd not starting up on Fedora core 3 linux , nVidia quadro 980 XGL, nVidia 6629 driver (Thu Jan 06 2005 - 09:42:26 CST)
- Re: pdb files (Wed Jan 05 2005 - 02:39:13 CST)
- Re: how to represent H-bonds between chain A and chain B using VMD (Wed Jan 05 2005 - 02:29:52 CST)
- Re: pdb files (Tue Jan 04 2005 - 14:02:50 CST)
- Re: pdb files (Tue Jan 04 2005 - 01:33:53 CST)
- Re: Re: your mail (Tue Jan 04 2005 - 01:25:10 CST)
- Re: ERROR) Failed to create Surf atom radii input file (Tue Dec 28 2004 - 10:14:27 CST)
- Re: ERROR) Failed to create Surf atom radii input file (Tue Dec 28 2004 - 08:37:37 CST)
- Re: DynamicBonds representation (Thu Dec 16 2004 - 13:04:27 CST)
- Re: getbonds for H-bonds request (Mon Nov 08 2004 - 13:31:35 CST)
- Re: Selection of atoms and bond specific to MD snapshot (Sat Nov 06 2004 - 15:12:35 CST)
- Re: VMD scripting questions (Fri Oct 29 2004 - 08:26:48 CDT)
- Re: vmd customization (Thu Oct 28 2004 - 07:30:57 CDT)
- Re: save states with relative directory structure (Wed Oct 20 2004 - 11:15:27 CDT)
- Re: Changing color of a given atom (Wed Oct 13 2004 - 00:52:36 CDT)
- Re: Specifying distances for bond cutoffs? (Wed Oct 13 2004 - 00:46:39 CDT)
- Re: Basic VMD questions... (Sun Oct 10 2004 - 03:20:16 CDT)
- Re: Basic VMD questions... (Fri Oct 08 2004 - 02:17:34 CDT)
- Re: measuring h-bonds (Fri Sep 17 2004 - 01:16:45 CDT)
- Re: measuring h-bond distances (Sun Sep 12 2004 - 06:18:27 CDT)
- Re: torsion angle (Mon Sep 06 2004 - 09:28:52 CDT)
- Re: Periodic display problem (Wed Aug 25 2004 - 01:52:26 CDT)
- Re: Periodic display problem (Tue Aug 24 2004 - 09:56:02 CDT)
- Re: Trajectory Files (Sun Aug 08 2004 - 13:36:35 CDT)
- Re: reading structure *.xyz (Tue Jul 20 2004 - 17:39:02 CDT)
- Re: loading .gz trajectory files (Tue Jul 20 2004 - 17:12:47 CDT)
- Re: Unit cell coordinates and radial distribution functions (Tue Jul 20 2004 - 01:29:03 CDT)
- visualization of electroly solvation shells (Mon Jul 19 2004 - 04:09:34 CDT)
- Re: Box of non-polar solvent (Fri Jul 16 2004 - 11:59:45 CDT)
- Re: Updated Bonding Connectivity each frame (Tue Jul 13 2004 - 15:28:17 CDT)
- Re: element Si (Fri Jul 09 2004 - 12:11:46 CDT)
- Re: width for triangle (Wed Jul 07 2004 - 09:06:32 CDT)
- Re: periodic display and space group and VMD (Tue Jul 06 2004 - 14:18:34 CDT)
- Re: your mail (Wed Jun 30 2004 - 16:39:38 CDT)
- Re: Average coordinates (Thu Jun 24 2004 - 23:48:36 CDT)
- Re: mpeg doesn't run on media player (Thu Jun 24 2004 - 23:27:22 CDT)
- Re: visualizing trr files (Fri Jun 18 2004 - 13:46:13 CDT)
- Re: Need a few testers for Linux version of VMD 1.8.3... (Fri Jun 11 2004 - 15:17:13 CDT)
- Re: CUBIC box of system (Thu Jun 03 2004 - 12:44:37 CDT)
- Re: display of electron density maps (Thu Jun 03 2004 - 11:50:29 CDT)
- Re: CUBIC box of system (Thu Jun 03 2004 - 07:22:09 CDT)
- Re: animating an iso-surface (Wed May 26 2004 - 15:48:49 CDT)
- Re: draw lines (Wed May 26 2004 - 01:01:05 CDT)
- Re: Iso-surfaces, VolumeSlices and tracing with VMD 1.8.2 (Mon May 24 2004 - 12:44:03 CDT)
- Re: Non-protein Multiple-Frame File (Mon May 24 2004 - 08:59:05 CDT)
- Re: changing the representation of all loaded molecules (Thu May 20 2004 - 13:35:08 CDT)
- Re: changing the representation of all loaded molecules (Thu May 20 2004 - 02:34:14 CDT)
- Re: Dynamic selection of residues in a trajectory (Wed May 19 2004 - 08:45:05 CDT)
- Re: some visualization challenges (Mon May 17 2004 - 15:07:43 CDT)
- some visualization challenges (Sun May 16 2004 - 14:03:11 CDT)
- Re: Surface rendering crashes PC (Tue May 11 2004 - 10:05:08 CDT)
- Re: variable atom number and dynamic bonds (Wed May 05 2004 - 13:22:24 CDT)
- Re: Coloring with an XYZ file (Wed May 05 2004 - 01:28:00 CDT)
- Re: error with top2psf (Wed Apr 21 2004 - 15:47:17 CDT)
- Re: xyz plugin (Tue Apr 20 2004 - 01:55:15 CDT)
- Re: xyz aluminium connectivity questions (Tue Apr 13 2004 - 11:27:30 CDT)
- Re: Centering of the view on one atom (Wed Mar 31 2004 - 14:12:51 CST)
- Re: Copying a selection (Mon Mar 22 2004 - 12:56:30 CST)
- Re: gziped files (Tue Mar 09 2004 - 06:19:39 CST)
- Re: waters within hydrophobic pore of protein (Mon Mar 01 2004 - 02:20:19 CST)
- Re: Hydrogen Bond Energy (Thu Feb 26 2004 - 03:46:52 CST)
- Re: tcl question (Sat Feb 07 2004 - 08:13:33 CST)
- Re: Spatial Distributionb Functions (Thu Feb 05 2004 - 04:12:31 CST)
- Re: PBC (Tue Jan 06 2004 - 16:49:44 CST)
- Re: PBC (Tue Jan 06 2004 - 12:19:50 CST)
- Announce: CPMD VMD visualization tutorial (Thu Dec 18 2003 - 13:25:56 CST)
- Re: DCD unit cell data (Thu Oct 16 2003 - 04:59:29 CDT)
- Re: saving bond-length information (Thu Sep 11 2003 - 06:36:48 CDT)
- Re: Graphics workstation and Xenon problems with VMD? (Wed Aug 27 2003 - 10:19:44 CDT)
- Re: Reg: No. of Frames (Mon Jul 28 2003 - 13:33:51 CDT)
- Re: Reg: No. of Frames (Mon Jul 28 2003 - 02:13:51 CDT)
AYTUG TUNCEL
- NAMD to Amber (Thu Apr 06 2006 - 08:46:10 CDT)
AyÅŸe Ã–zlem Aykut
- glycerol (Tue Oct 20 2009 - 03:13:57 CDT)
- B factor calculation (Tue Nov 04 2008 - 10:51:24 CST)
Ayþe Özlem Sezerman
- VMD open GL Display problem (Tue Feb 27 2007 - 06:52:19 CST)
Aziz, John
- Generating a PSF for a Non-protien (Mon Mar 01 2010 - 08:27:10 CST)
B $B6Q
- (no subject) (Mon Feb 16 2004 - 19:44:43 CST)
B. Bennion
- Re: centering seection on screen (Thu Apr 17 2003 - 09:50:32 CDT)
- getting heavy atom contacts (Thu Mar 20 2003 - 12:40:59 CST)
- atomselect (Tue Mar 18 2003 - 16:03:05 CST)
- Re: Pls help me to render files with only traces of proteins! (Thu Feb 06 2003 - 13:23:01 CST)
- Re: Pls help me to render files with only traces of proteins! (Wed Feb 05 2003 - 21:13:34 CST)
- Re: compiling vmd... (Tue Jan 28 2003 - 10:09:33 CST)
- Re: rendering from VMD (Tue Dec 17 2002 - 15:56:45 CST)
- Re: rendering from VMD (Tue Dec 17 2002 - 14:36:07 CST)
- Building VMD on windows 2000 (Mon Dec 16 2002 - 15:35:51 CST)
- Re: CRD problems and CRD to DCD conversion (Wed Nov 13 2002 - 15:48:57 CST)
- helices in coil (Tue Oct 29 2002 - 18:24:13 CST)
- Re: core dump when launching vmd1.8a21 (Thu Oct 24 2002 - 20:30:05 CDT)
- Re: question on prmtop & prmcrd from leap (amber) (Fri Oct 18 2002 - 18:13:43 CDT)
- Re: molden xyz movie (Fri Oct 11 2002 - 00:40:52 CDT)
- Re: molden xyz movie (Thu Oct 10 2002 - 18:22:59 CDT)
- residue rotation within single pdb file (Sun Jul 07 2002 - 02:27:32 CDT)
- Plugin testing (Thu Jun 06 2002 - 12:07:05 CDT)
- Re: opengl libraries (Tue Nov 27 2001 - 15:18:45 CST)
- opengl libraries (Mon Nov 26 2001 - 12:23:49 CST)
- compiling problems (Mon Nov 26 2001 - 11:35:50 CST)
- Making UIobjects (Thu Oct 25 2001 - 11:13:27 CDT)
- Re: new user animation question (Thu Oct 04 2001 - 10:37:32 CDT)
- Re: new user animation question (Thu Oct 04 2001 - 00:47:08 CDT)
- Coloring Sections of Peptides (Wed May 16 2001 - 15:26:01 CDT)
- Re: Some newbie questions (Fri Apr 20 2001 - 10:40:20 CDT)
- animation and reps (Sat Mar 31 2001 - 01:40:43 CST)
- Molecule rotation (Thu Mar 08 2001 - 12:16:46 CST)
- removing unwanted residues (Thu Aug 31 2000 - 11:57:00 CDT)
- Re: animation (Wed Aug 30 2000 - 11:47:25 CDT)
- hbond calculations (Tue Aug 29 2000 - 10:49:16 CDT)
- PDB file output (Tue Jul 25 2000 - 11:59:40 CDT)
B.D Allen
- Re: CoordinateTransformation (Sun Sep 03 2006 - 20:38:38 CDT)
- Re: VMD & FC 4.0 (Wed Jul 13 2005 - 16:30:12 CDT)
- Iso-surfaces, VolumeSlices and tracing with VMD 1.8.2 (Mon May 24 2004 - 10:09:22 CDT)
B.M.B. Vanschouwen
- Reconstruction of XST data from DCD data (Sun May 01 2011 - 19:29:03 CDT)
- Displaying an overlay of multiple structures with VMD (Tue Feb 08 2011 - 09:19:45 CST)
- How to use VMD script "PorcupinePlot.tcl" (Mon Jan 31 2011 - 10:46:55 CST)
Babban Mia
- Re: Re: Solvating a Protein in VMD using NON STANDARD SOLVENT (Sat Aug 13 2011 - 21:39:41 CDT)
- Re: Re: Solvating a Protein in VMD using NON STANDARD SOLVENT (Sat Aug 13 2011 - 21:15:32 CDT)
- Re: Re: Solvating a Protein in VMD using NON STANDARD SOLVENT (Sat Aug 13 2011 - 08:42:09 CDT)
- Re: Solvating a Protein in VMD using NON STANDARD SOLVENT (Sat Aug 13 2011 - 07:10:18 CDT)
- .COOR TO PDB FILE (Sat Aug 13 2011 - 01:11:48 CDT)
- Solvation in VMD using Non Standard Solvent System (Wed Aug 10 2011 - 07:35:32 CDT)
- Solvate a Protein for Explicit Solvent MD (Tue Aug 09 2011 - 04:16:03 CDT)
Bala subramanian
- Re: viewing pca output (Fri May 02 2008 - 06:16:00 CDT)
- viewing pca output (Thu Apr 24 2008 - 08:09:43 CDT)
balas002_at_bama.ua.edu
- Re: Making movies (Wed Jun 30 2004 - 12:26:26 CDT)
- Re: Making movies (Tue Jun 29 2004 - 14:21:22 CDT)
- Re: Making movies (Tue Jun 29 2004 - 10:37:40 CDT)
- Re: Making movies (Mon Jun 28 2004 - 15:48:17 CDT)
- Re: Making movies (Mon Jun 28 2004 - 14:40:14 CDT)
- Re: Making movies (Wed Jun 23 2004 - 10:54:32 CDT)
- Making movies (Tue Jun 22 2004 - 16:15:27 CDT)
Balazs Jojart
- Re: How to read pdbqt file? (Sun Sep 04 2011 - 01:41:08 CDT)
- Re: Orienting a Protein (Fri Aug 12 2011 - 18:57:22 CDT)
- Re: setenv: Too many arguments (Sat Oct 16 2010 - 00:53:21 CDT)
- setenv: Too many arguments (Fri Oct 15 2010 - 16:34:52 CDT)
- Re: Selecting AMBER ions Cl- and Na+ using VMD (Wed Mar 17 2010 - 13:29:27 CDT)
- Re: masure distance trajectory - delete variable (Sun Jan 17 2010 - 13:20:20 CST)
- masure distance trajectory - delete variable (Sun Jan 17 2010 - 05:11:07 CST)
- Re: pbc wrap center on protein (Sat Dec 19 2009 - 14:56:22 CST)
- pbc wrap center on protein (Sat Dec 19 2009 - 12:16:22 CST)
- Re: helix axes (Tue Mar 31 2009 - 14:28:40 CDT)
- Re: Re: periodic boundary conditions (yes, i read the tutorials) (Tue Jul 29 2008 - 01:21:17 CDT)
Balu, Radhakrishnan (Cont, ARL/WMRD)
- RE: Making movies in VMD (UNCLASSIFIED) (Thu Dec 06 2007 - 15:28:03 CST)
- (UNCLASSIFIED) (Tue Nov 27 2007 - 09:18:18 CST)
Bamidele Adisa
- removing surrounding water molecules (Fri Feb 13 2004 - 16:03:15 CST)
Ban Arn
- Re: helical content script (Tue May 01 2012 - 09:23:52 CDT)
- helical content script (Tue May 01 2012 - 05:55:51 CDT)
- Re: Hydrophobic mismatch script (Mon Apr 23 2012 - 05:29:34 CDT)
- Hydrophobic mismatch script (Mon Apr 23 2012 - 04:08:28 CDT)
- Re: Re: Thickness of bilayer script (Fri Apr 20 2012 - 05:30:38 CDT)
- lipid order parameter (Mon Apr 16 2012 - 05:16:31 CDT)
- Lipid order paramaeter script (Thu Apr 05 2012 - 04:35:52 CDT)
- Re: secondary structure calculation (Thu Mar 29 2012 - 05:05:38 CDT)
- Re: secondary structure calculation (Wed Mar 28 2012 - 04:47:27 CDT)
- secondary structure calculation (Tue Mar 27 2012 - 11:55:24 CDT)
- Input selection as xyz co-ordinates (Wed Feb 22 2012 - 09:09:33 CST)
- SASA -tcl script (Tue Feb 21 2012 - 12:36:07 CST)
- Re: Tcl script error (Thu Feb 09 2012 - 16:17:48 CST)
- Re: Tcl script error (Wed Feb 08 2012 - 15:59:22 CST)
- Re: Tcl script error (Mon Feb 06 2012 - 11:57:57 CST)
- Re: Tcl script error (Mon Feb 06 2012 - 12:05:49 CST)
- Re: Tcl script error (Mon Feb 06 2012 - 11:28:12 CST)
- Re: Tcl script error (Mon Feb 06 2012 - 11:12:12 CST)
- Tcl script error (Mon Feb 06 2012 - 10:50:14 CST)
- floating error - tcl script (Fri Feb 03 2012 - 04:51:11 CST)
- Re: Error while running steered MD script (Fri Feb 03 2012 - 03:07:34 CST)
- Re: Error while running steered MD script (Thu Feb 02 2012 - 17:29:02 CST)
- Error while running steered MD script (Thu Feb 02 2012 - 10:24:18 CST)
- Calculation of ligand displacement Vs time (Mon Jan 30 2012 - 03:53:27 CST)
- vmd ligand fluctuation analysis (Fri Dec 16 2011 - 09:28:41 CST)
- Binding site similarity (Mon Dec 05 2011 - 09:51:55 CST)
- tcl script (Fri Nov 25 2011 - 12:16:47 CST)
- Re: radius of gyration (Wed Nov 02 2011 - 16:02:45 CDT)
- radius of gyration (Wed Nov 02 2011 - 14:41:09 CDT)
- Re: VMD display residues (Wed Aug 31 2011 - 04:28:35 CDT)
- VMD display residues (Tue Aug 30 2011 - 12:14:35 CDT)
- Re: VMD movie (Tue Aug 30 2011 - 12:10:26 CDT)
- VMD movie (Tue Aug 30 2011 - 10:31:58 CDT)
- Water in binding site (Mon Aug 29 2011 - 04:47:53 CDT)
- Re: Aligning two proteins of varying atom numbers (Sun May 22 2011 - 16:25:11 CDT)
- Re: Aligning two proteins of varying atom numbers (Fri May 20 2011 - 09:04:53 CDT)
- Re: Aligning two proteins of varying atom numbers (Fri May 20 2011 - 06:37:47 CDT)
- Re: Aligning two proteins of varying atom numbers (Fri May 20 2011 - 04:23:12 CDT)
- Re: Aligning two proteins of varying atom numbers (Thu May 19 2011 - 11:37:40 CDT)
- Aligning two proteins of varying atom numbers (Thu May 19 2011 - 10:43:10 CDT)
- X & Y co-ordinate data (Sun May 01 2011 - 11:27:39 CDT)
- 2D Contour plot (Wed Apr 06 2011 - 05:06:09 CDT)
- Re: script for projection of c-alpha atom cordinates on xy plane (Tue Mar 22 2011 - 05:00:42 CDT)
- Re: script for projection of c-alpha atom cordinates on xy plane (Mon Mar 21 2011 - 10:37:03 CDT)
- script for projection of c-alpha atom cordinates on xy plane (Fri Mar 18 2011 - 12:58:19 CDT)
- Re: tcl script (Fri Mar 11 2011 - 11:15:51 CST)
- tcl script (Fri Mar 11 2011 - 09:06:00 CST)
- Re: Helix motions (Wed Feb 09 2011 - 10:50:45 CST)
- Helix motions (Mon Feb 07 2011 - 05:29:31 CST)
- CA distance command (Thu Feb 03 2011 - 08:16:14 CST)
- Re: water molecule count (Tue Feb 01 2011 - 10:25:52 CST)
- water molecule count (Tue Feb 01 2011 - 08:56:55 CST)
- Side-chain Dihedrals (Tue Feb 01 2011 - 05:07:19 CST)
- Water mediated hydrogen bond - VMD script (Tue Oct 26 2010 - 13:31:42 CDT)
- Water-mediated hydrogen bonds (Tue Sep 28 2010 - 04:19:30 CDT)
- Hydrogen bonds (Tue Sep 21 2010 - 11:17:10 CDT)
- 2D RMSD matrix plot (Fri Jul 30 2010 - 05:52:02 CDT)
- Dihedrals Angle (Wed Jul 28 2010 - 11:43:47 CDT)
- Re: 2D rmsd matrix plot for C-alpha atoms (Wed Jul 28 2010 - 07:55:33 CDT)
- Re: 2D rmsd matrix plot for C-alpha atoms (Wed Jul 28 2010 - 08:01:54 CDT)
- Re: 2D rmsd matrix plot for C-alpha atoms (Wed Jul 28 2010 - 07:45:52 CDT)
- 2D rmsd matrix plot for C-alpha atoms (Wed Jul 28 2010 - 05:50:21 CDT)
- 2D rmsd plot for C-alpha atoms (Tue Jul 27 2010 - 10:55:48 CDT)
- Re: Hydrophobic interaction (Fri Jun 18 2010 - 08:18:23 CDT)
- Hydrophobic interaction (Fri Jun 18 2010 - 07:30:45 CDT)
- Hydrophobic interaction (Fri Jun 18 2010 - 06:53:37 CDT)
- Hydrophobic interaction (Fri Jun 18 2010 - 05:59:43 CDT)
- Re: Interaction Energy (Wed Jun 02 2010 - 16:17:14 CDT)
- Re: Interaction Energy (Wed Jun 02 2010 - 11:35:57 CDT)
- Interaction Energy (Wed Jun 02 2010 - 07:29:38 CDT)
BAN,YOUNG MIN
- Bond representation of coarse grained molecules (Wed Sep 02 2009 - 16:52:23 CDT)
Bankf of the West
- eTimeBanker Bill Pay Service (Wed Aug 24 2005 - 11:02:50 CDT)
Baofu Qiao
- Re: Bond representation of coarse grained molecules (Wed Oct 07 2009 - 02:21:14 CDT)
baogen duan
- load two or more molecuoles at one time (Tue Nov 15 2005 - 21:42:53 CST)
- add a new file to vmd1.8.3 on linux(FC4) (Sun Oct 30 2005 - 21:50:22 CST)
- add a new file type to VMD on linux(FC4) (Thu Oct 27 2005 - 22:32:59 CDT)
- Hello! (Sat Oct 08 2005 - 05:54:54 CDT)
- Hello! (Mon Sep 26 2005 - 08:52:05 CDT)
Baoqiang Cao
- write pdb and psf with missing segments in original pdb file (Tue Sep 27 2005 - 21:10:07 CDT)
- an inconsistance between psf file and coor file after equilibration (Sun May 22 2005 - 22:28:16 CDT)
Barbault Florent
- problem with 1.8.7 installation (Tue Aug 25 2009 - 04:50:41 CDT)
- Re: problem (Fri Feb 13 2009 - 05:24:39 CST)
- problem (Wed Feb 11 2009 - 02:41:52 CST)
barrett
- Apple VMD not showing gro file properly (Tue Feb 10 2004 - 07:56:50 CST)
- RE: movie making in batch mode (Fri Feb 06 2004 - 04:57:01 CST)
- movie making in batch mode (Tue Dec 16 2003 - 10:07:33 CST)
- RE: python: packages not found also... (Mon Sep 08 2003 - 05:44:12 CDT)
- RE: python: cannot find library (Thu Aug 07 2003 - 03:28:12 CDT)
- python: cannot find library (Wed Aug 06 2003 - 04:53:06 CDT)
Barry Bickmore
- trajectory analysis (Wed Sep 23 2009 - 11:39:08 CDT)
- bonds across periodic boundaries (Tue Oct 16 2007 - 08:53:09 CDT)
Barry Isralewitz
- Re: unable to animate alanine.dcd (Sat Dec 06 1997 - 07:30:28 CST)
- Re: what's the Letter in figure caption meaning of TIME-LINE 2nd structure present? (Mon May 07 2012 - 12:32:42 CDT)
- Re: Plotting of Co-ordinates on VMD (Fri Mar 30 2012 - 14:25:06 CDT)
- Re: secondary structure calculation (Tue Mar 27 2012 - 12:44:38 CDT)
- Re: VMD Contact map through time (Wed Feb 08 2012 - 16:47:22 CST)
- Re: Visualizing Timeline (tml) data w/o having to load trajectories (Thu Oct 27 2011 - 13:25:08 CDT)
- Re: time line (Wed Mar 16 2011 - 15:03:45 CDT)
- Re: contact map for Protein-DNA interaction (Mon Jul 12 2010 - 13:50:25 CDT)
- Re: your mail (Tue Jan 02 2007 - 12:21:16 CST)
- Re: [jrodgers78@gmail.com: outputing secondary structure from timeline] (Mon Jan 23 2006 - 15:16:42 CST)
- Re: aligntool (Thu Feb 13 2003 - 19:33:38 CST)
- Re: Animating Trajectories/NAMD Output files (Wed May 08 2002 - 11:37:05 CDT)
- Re: Animating Trajectories/NAMD Output files (Wed May 08 2002 - 11:01:26 CDT)
- Re: Animating Trajectories/NAMD Output files (Tue May 07 2002 - 22:15:21 CDT)
- Re: secondary structure (Tue Dec 11 2001 - 11:46:33 CST)
- Re: making a movie of trajectory file animation (Thu Nov 08 2001 - 15:51:55 CST)
- Re: fixing a molecule (Wed Aug 01 2001 - 17:40:06 CDT)
- Announce: ZoomSeq -- sequence browser for VMD (Thu Dec 28 2000 - 14:54:20 CST)
- Re: povray images allways perspective? (Thu Dec 14 2000 - 11:02:29 CST)
- Re: CCL:program for viewing MD (Mon Oct 23 2000 - 11:55:02 CDT)
- Re: Using VMD to edit dynamics output (Mon Oct 02 2000 - 01:07:39 CDT)
- Re: Prachi Singh's mail (Mon Jun 05 2000 - 16:19:59 CDT)
Bartek Dobrzelecki
- Labels (atom type, partial charge) (Thu Jul 17 2003 - 06:00:22 CDT)
Basak Isin
- Reference to SASA calculation in VMD (Tue Oct 18 2005 - 10:12:24 CDT)
Baumert, Uwe Dr.rer.nat.
- VMD 1.8.7 beta5 probs with NVIDIA Quadro FX3450/4000 graphic card (Mon Jun 22 2009 - 04:18:54 CDT)
baxy
- inserting protein into membrane (Thu May 17 2007 - 08:39:58 CDT)
- Sequences and BLAST searching (Wed Nov 15 2006 - 06:51:22 CST)
- Sequences and BLAST searching (Wed Nov 15 2006 - 06:47:08 CST)
bbickmore_at_comcast.net
- setting unit cell dimensions (Sun Oct 14 2007 - 23:07:50 CDT)
Ben Chern
- Re: Using namdenergy in batch mode to compute dihedral energies (Sun Apr 13 2008 - 20:49:26 CDT)
- Re: Compiling VMD under Windows XP (Thu Apr 03 2008 - 07:14:22 CDT)
- Re: Compiling VMD under Windows XP (Tue Apr 01 2008 - 20:26:36 CDT)
- Re: Compiling VMD under Windows XP (Tue Apr 01 2008 - 01:33:34 CDT)
- Re: Compiling VMD under Windows XP (Mon Mar 31 2008 - 21:39:41 CDT)
- Re: using cvs under Windows XP (Mon Mar 31 2008 - 10:21:11 CDT)
- using cvs under Windows XP (Mon Mar 31 2008 - 08:31:31 CDT)
- Compiling VMD under Windows XP (Mon Mar 31 2008 - 04:13:38 CDT)
- Re: Can VMD show the interactions between different structure part? (Thu Mar 27 2008 - 20:26:13 CDT)
- Re: Can VMD show the interactions between different structure part? (Thu Mar 27 2008 - 06:35:56 CDT)
- Can VMD show the interactions between different structure part? (Wed Mar 26 2008 - 22:20:57 CDT)
- Re: Can we get secondary structure from PDB files? (Wed Mar 26 2008 - 22:12:12 CDT)
- Re: Can we get secondary structure from PDB files? (Wed Mar 26 2008 - 20:44:00 CDT)
- Can we get secondary structure from PDB files? (Wed Mar 26 2008 - 04:02:04 CDT)
Ben Cornett
- 1.6.1 hotkey problem (Wed May 02 2001 - 13:05:47 CDT)
- Re: SGI O2 stereo problems (Thu Mar 09 2000 - 12:13:20 CST)
Ben Eisenbraun
- Re: Mac and cmd line (Mon Aug 24 2009 - 15:50:58 CDT)
Ben Hall
- Unusual visualisations (Wed Feb 01 2012 - 09:54:01 CST)
- Quantitative meaning of volmap isosurface (Tue Jan 31 2012 - 06:01:20 CST)
Ben Roberts
- Re: TCL strangeness (Thu Dec 08 2011 - 21:17:45 CST)
- Re: TCL strangeness (Thu Dec 08 2011 - 20:07:16 CST)
- Re: Error encountered when quitting VMD on the Mac (Wed Oct 13 2010 - 12:39:07 CDT)
- Re: Error encountered when quitting VMD on the Mac (Mon Sep 13 2010 - 21:12:37 CDT)
- Error encountered when quitting VMD on the Mac (Mon Sep 13 2010 - 16:55:53 CDT)
- Closing filehandles in vmd tcl script (Thu Jan 20 2005 - 21:05:51 CST)
- Re: Unit cell coordinates and radial distribution functions (Thu Jul 22 2004 - 20:27:18 CDT)
- Unit cell coordinates and radial distribution functions (Mon Jul 19 2004 - 21:12:38 CDT)
Ben Rodriguez
- Saving coordinates that meet selection criteria for each frame (Tue Apr 17 2012 - 18:28:43 CDT)
- VMD 1.8.7 and NVIDIA 256.35 driver problems (CUDA issue?) (Thu Jun 24 2010 - 14:29:18 CDT)
- Is nvidia 3D Vision + quadro working in linux (Tue Apr 27 2010 - 17:16:48 CDT)
- Displaying local water molecules throughout trajectory (Thu Feb 26 2009 - 14:47:26 CST)
- Unrecognized Chains in VMD for tetrameric protein (Thu Feb 19 2009 - 18:14:55 CST)
- Calculating pocket volume (Thu Aug 28 2008 - 16:37:55 CDT)
Beniamino Sciacca
- problem with vmd (Tue Mar 28 2006 - 13:44:37 CST)
Benjamin Bouvier
- Binary VMD buid for Linux, text mode only (Wed Mar 03 2010 - 09:26:20 CST)
- Re: Principle Component Analysis of Protein PDB Structures (Mon Feb 22 2010 - 14:43:40 CST)
- Re: problem of installing vmd 1.8.7 on Mac osx 10.4.11 (Wed Feb 17 2010 - 10:50:33 CST)
- HOOMD plugin (Tue Jan 12 2010 - 11:04:08 CST)
- Re: vmd mailing list (Fri Oct 16 2009 - 03:46:43 CDT)
- Re: model protein chain not displayed properly (Mon Sep 28 2009 - 14:54:09 CDT)
- Re: namd-l: how to write a command to close vmd in shell script? (Mon Aug 10 2009 - 03:07:38 CDT)
- Re: VMD and X forwarding to MacOS 10.5.7 (Fri Jun 12 2009 - 11:33:47 CDT)
- Re: VMD and X forwarding to MacOS 10.5.7 (Fri Jun 12 2009 - 10:45:37 CDT)
- Re: VMD and X forwarding to MacOS 10.5.7 (Fri Jun 12 2009 - 10:28:17 CDT)
- VMD and X forwarding to MacOS 10.5.7 (Fri Jun 12 2009 - 09:48:29 CDT)
- Re: get a PDB file from DCD file (Tue Jan 27 2009 - 09:49:51 CST)
- Re: odd render problems with Vista (Sun Jan 11 2009 - 14:20:04 CST)
- Re: script that reacts on movement of frameslider in vmd main (Mon Dec 01 2008 - 09:28:55 CST)
- Re: Per-frame 'graphics'? (Fri Oct 31 2008 - 13:36:24 CDT)
- Per-frame 'graphics'? (Fri Oct 31 2008 - 10:46:03 CDT)
- Re: reading multiples molecules. (Tue Oct 28 2008 - 06:15:45 CDT)
- Re: Improving VMD performance on Linux? (Mon Oct 20 2008 - 06:05:26 CDT)
- Re: Deleting frames / molecules does not free up memory! (Tue Oct 14 2008 - 11:34:44 CDT)
- Deleting frames / molecules does not free up memory! (Tue Oct 14 2008 - 10:26:55 CDT)
- Re: 3DConnexion SpaceNavigator in 1.8.7alpha30 on OS X (Wed Jul 30 2008 - 10:36:17 CDT)
- 3DConnexion SpaceNavigator in 1.8.7alpha30 on OS X (Wed Jul 30 2008 - 09:37:32 CDT)
Benjamin Goldsteen
- Re: Solutions for stereo - is CRT technology dead? (Mon May 22 2006 - 11:15:44 CDT)
- Re: Choice of a Linux machine for VMD and high-end computing (Wed Apr 06 2005 - 16:58:07 CDT)
- Re: stereo for XP and Linux (Wed Jan 12 2005 - 18:04:44 CST)
- Re: msms and vmd on amd athlon64. (Mon Mar 15 2004 - 14:18:16 CST)
- Re: color problem with Ati Fire GL E1 (Wed Mar 03 2004 - 22:23:31 CST)
- Re: vmd crashes after startup... (Wed Dec 03 2003 - 22:46:17 CST)
- Fwd: Re: graphics card (Sun Nov 30 2003 - 19:02:23 CST)
- Re: VMD 1.8.1 MacOSX running very slow on new G4 1 GHz Powerbook (Sun Nov 09 2003 - 20:49:02 CST)
Benjamin Hall
- Re: Quantitative meaning of volmap isosurface (Tue Jan 31 2012 - 07:32:50 CST)
- Re: For loops decelerate (Mon Jun 06 2011 - 16:28:31 CDT)
- Re: For loops decelerate (Fri Jun 03 2011 - 11:23:25 CDT)
- For loops decelerate (Thu Jun 02 2011 - 03:39:02 CDT)
- Re: Batch mode on Mac OS 10.5.3 (Wed Jun 04 2008 - 08:26:23 CDT)
- Batch mode on Mac OS 10.5.3 (Tue Jun 03 2008 - 05:16:52 CDT)
- Measuring fit exclusively in 1 plane (Thu May 01 2008 - 04:59:04 CDT)
- Re: Re: porcupine plot (Thu Apr 03 2008 - 12:00:11 CDT)
- Re: porcupine plot (Wed Apr 02 2008 - 17:30:49 CDT)
Benjamin Kaduk
- lib/stride/README (Mon Mar 19 2012 - 21:57:22 CDT)
- plugins/hesstrans/Makefile recurses on CXXFLAGS (Mon Mar 19 2012 - 21:42:36 CDT)
Benjamin SCHWARZ
- loading a new molecule without changing the view (Fri Jan 06 2006 - 08:01:05 CST)
Benjamin Stauch
- parallel VMD (Tue Sep 16 2008 - 07:47:16 CDT)
Bennion, Brian
- RE: Loop for (Thu May 10 2012 - 21:17:27 CDT)
- RE: Re:Problem with generating psf using CGENFF (Mon Apr 30 2012 - 13:26:00 CDT)
- RE: Problem with generating psf using CGENFF (Fri Apr 27 2012 - 11:57:18 CDT)
- RE: Problem with generating psf using CGENFF (Fri Apr 27 2012 - 09:23:34 CDT)
- RE: Problem with generating psf using CGENFF (Thu Apr 26 2012 - 13:27:45 CDT)
- RE: Problem with hydration script (Thu Apr 19 2012 - 14:32:53 CDT)
- adding patches via autopsf (Wed Mar 21 2012 - 11:34:47 CDT)
- RE: pdb reader/writer appears to corrupt pdb output (Thu Feb 16 2012 - 16:04:27 CST)
- pdb reader/writer appears to corrupt pdb output (Thu Feb 16 2012 - 14:49:06 CST)
- testing vmd1.9.1 (Mon Feb 06 2012 - 18:19:19 CST)
- RE: using vmd to apply symmetry transformations (Fri Jan 13 2012 - 11:06:27 CST)
- using vmd to apply symmetry transformations (Fri Jan 13 2012 - 09:21:39 CST)
- RE: linux issues (Mon Sep 12 2011 - 12:25:34 CDT)
- RE: can not import Hessian/charge from single point calculation (Wed Jun 22 2011 - 12:55:36 CDT)
- RE: can not import Hessian/charge from single point calculation (Tue Jun 21 2011 - 12:04:46 CDT)
- RE: parameterization tool (Thu Jun 09 2011 - 11:52:29 CDT)
- parameterization tool (Wed Jun 08 2011 - 16:14:31 CDT)
- RE: vmd1.9beta1 namdEnergyPlugin (Mon Feb 28 2011 - 16:06:28 CST)
- RE: vmd1.9beta1 namdEnergyPlugin (Fri Feb 25 2011 - 10:45:04 CST)
- RE: vmd1.9beta1 namdEnergyPlugin (Thu Feb 24 2011 - 12:42:02 CST)
- vmd1.9beta1 (Wed Feb 23 2011 - 14:21:51 CST)
- RE: VMD XRequest errors (Wed Jul 28 2010 - 17:24:33 CDT)
- intersurf plugin missing in VMD 1.8.7 ? (Wed Mar 03 2010 - 11:11:49 CST)
- X_ChangeProperty error (Fri Feb 12 2010 - 14:50:27 CST)
BERGY
- how to identify DNA-protein interaction interface (Thu Apr 24 2008 - 05:42:53 CDT)
Berit Hinnemann
- Re: Graphics card for VMD (Wed Dec 16 2009 - 07:16:14 CST)
- Graphics card for VMD (Tue Dec 15 2009 - 11:25:25 CST)
- Re: Other color scales than the predefined ones? (Thu Nov 27 2008 - 03:38:46 CST)
- Other color scales than the predefined ones (Wed Nov 26 2008 - 09:52:23 CST)
- Re: Movie of a xyz trajectory (Wed Nov 26 2008 - 07:03:06 CST)
- Other color scales than the predefined ones? (Wed Nov 26 2008 - 07:00:17 CST)
- Nvidia graphics card with VMD (Fri Oct 20 2006 - 07:13:42 CDT)
- Computer for 3D visualization (Wed Sep 20 2006 - 04:45:58 CDT)
- Volume slices of Gaussian Cube Files: Color scale (Thu Jun 29 2006 - 13:42:05 CDT)
- RE: Gaussian Cube file with VMD (Tue May 23 2006 - 11:00:36 CDT)
- Gaussian Cube file with VMD (Mon May 22 2006 - 18:29:12 CDT)
Bernardo Sosa Padilla Araujo
- Re: writepdb using selection form different molecules (Mon Mar 22 2010 - 13:25:35 CDT)
- writepdb using selection form different molecules (Fri Mar 19 2010 - 23:29:56 CDT)
- Re: measure command problem (Tue Mar 02 2010 - 14:15:42 CST)
- Re: measure command problem (Tue Mar 02 2010 - 12:33:57 CST)
- measure command problem (Mon Mar 01 2010 - 21:44:09 CST)
- Re: Counting number of water molecules (Thu Dec 10 2009 - 18:48:20 CST)
- Counting number of water molecules (Wed Dec 09 2009 - 16:30:13 CST)
- radius of gyration units (Tue Nov 03 2009 - 15:08:36 CST)
Bernd Doser
- Problems with tcl/tk 8.5 (Tue Jan 20 2009 - 02:08:05 CST)
Bernhard Knapp
- sasa function (Thu Jan 21 2010 - 02:32:31 CST)
- H-bonds (Thu Apr 02 2009 - 06:27:25 CDT)
- defintion of alpha helix in vmd? (Tue Dec 16 2008 - 03:30:03 CST)
- vmd-rmsd-color-tool (Fri Aug 01 2008 - 02:27:48 CDT)
Bertie Earl
- Spring quality watches offer (Tue Apr 29 2008 - 19:30:10 CDT)
Bertrand P. S. Russell
- Re: installation problem vmd 1.8.6 on fedora 3 (Sat Feb 09 2008 - 05:22:24 CST)
bertrand russell
- superimposing two structures and getting the coordinates (Tue Feb 20 2007 - 11:52:03 CST)
- Re: How to save the snapshot of my protein? (Fri Feb 09 2007 - 03:58:53 CST)
- How to save the snapshot of my protein? (Fri Feb 09 2007 - 01:24:54 CST)
- How to make movie with .crd files? (Wed Dec 13 2006 - 02:36:23 CST)
- VMD - unable to create OpenGL (Tue Nov 07 2006 - 03:31:29 CST)
- differentiating solvent molecules...... (Tue Oct 17 2006 - 12:44:28 CDT)
- VMD Installation Help (Tue Sep 26 2006 - 12:05:26 CDT)
- Installing VMFD in kubuntu.............. (Wed Aug 30 2006 - 10:59:37 CDT)
Beth Ashbridge
- superimposing (Tue Nov 01 2005 - 08:03:15 CST)
BETTLER Emmanuel
- cartoon representation of 1crn (Fri Apr 23 2004 - 11:25:46 CDT)
- is VMD compatible with NVIDIA 3D stereo drivers ? (Fri Mar 12 2004 - 08:47:12 CST)
- several questions, (Tue Sep 26 2000 - 07:01:11 CDT)
beyza bilgic
- sharing atoms (Mon May 16 2011 - 08:52:33 CDT)
- changing the color of Sn atom (Wed May 11 2011 - 06:12:50 CDT)
Beyza Bilgiç
- changing the color of Sn atom (Wed May 11 2011 - 05:24:31 CDT)
- to change color of Sn atom (Wed May 11 2011 - 04:33:51 CDT)
- to change color of Sn atom (Wed May 11 2011 - 04:28:07 CDT)
bharat gupta
- Re: simulation (Wed Nov 30 2011 - 05:50:56 CST)
- Re: using vmd to view gromacs trajectory (Thu Apr 14 2011 - 10:20:29 CDT)
- Re: USING IED for essential dynamics in VMD (Tue Feb 01 2011 - 18:38:39 CST)
- Re: using IED interface in VMD 1.8.7 windows (Tue Feb 01 2011 - 02:51:45 CST)
- RE : pbc tools in vmd for simulation (Sat Apr 17 2010 - 08:40:16 CDT)
Bharat Kumar
- Re: MOE and NAMD (Thu Dec 30 2010 - 18:31:21 CST)
- MOE and NAMD (Wed Dec 29 2010 - 09:55:21 CST)
- RMSD and PSF generation (Mon Dec 20 2010 - 21:29:48 CST)
- Re: Membrane Protein Tutorial (Sun Dec 05 2010 - 22:40:28 CST)
- Membrane Protein Tutorial (Sat Dec 04 2010 - 01:42:49 CST)
Bhargava
- Re: center of unit cell (Thu Apr 08 2010 - 11:10:51 CDT)
- Re: On solvate plugin (Mon Jun 23 2008 - 09:14:05 CDT)
Bhaskar Jyoti Borah
- Re: exporting xyz file (Thu Jul 12 2007 - 11:19:25 CDT)
- Re: shifting of the origin (Thu Jul 12 2007 - 01:07:36 CDT)
- exporting xyz file (Thu Jul 12 2007 - 01:38:58 CDT)
- Re: shifting of the origin (Wed Jul 11 2007 - 23:33:22 CDT)
- Re: shifting of the origin (Wed Jul 11 2007 - 11:24:15 CDT)
- shifting of the origin (Tue Jul 10 2007 - 23:49:15 CDT)
- Re: need help (Tue Jul 10 2007 - 01:19:58 CDT)
- need help (Mon Jul 09 2007 - 05:25:50 CDT)
Bian Li
- problem with bigdcd rmsd calculaton output (Mon May 30 2011 - 22:22:48 CDT)
Biff Forbush
- Re: Headtracking software (Tue Nov 16 2010 - 12:37:21 CST)
- Re: Headtracking software (Tue Nov 16 2010 - 11:01:00 CST)
- CUDA-NAMD hangs -- check the Northbridge temp! (Tue Jan 05 2010 - 21:51:51 CST)
- joystick, win32 simple interface (Tue Jun 23 2009 - 18:32:57 CDT)
Bikan Tan
- How to cionize DNA? example needed! (Mon Aug 08 2011 - 18:59:19 CDT)
BIN ZHANG
- Re: clip plane and cpk / VdW (Wed Nov 23 2011 - 11:25:22 CST)
- Re: namd-l: how to generate transparent figures? (Sun Jul 24 2011 - 11:31:04 CDT)
- Re: CG_MD temperature (Thu Feb 03 2011 - 01:30:15 CST)
- gradient background not rendered (Fri Feb 19 2010 - 16:50:59 CST)
- Re: Restraints on coarse grained model (Wed Dec 09 2009 - 13:01:58 CST)
- Re: Restraints on coarse grained model (Wed Dec 09 2009 - 12:07:37 CST)
- Re: CG lipid bilayer vmd 1.8.7 (Wed Dec 02 2009 - 15:17:05 CST)
- Re: CG lipid bilayer vmd 1.8.7 (Wed Dec 02 2009 - 14:03:58 CST)
- error in rbcg-2007.par file (Fri Nov 27 2009 - 13:15:01 CST)
- Re: drawing waterbox (Thu Aug 27 2009 - 11:02:46 CDT)
- Re: Moving Molecule (Mon Aug 24 2009 - 11:21:41 CDT)
- algorithm for command *within* (Thu Jul 16 2009 - 11:29:43 CDT)
- running vmd on computer node (Mon Jun 29 2009 - 12:55:08 CDT)
- Re: main window missing? (Wed May 27 2009 - 16:36:07 CDT)
- Re: main window missing? (Wed May 27 2009 - 15:49:40 CDT)
- main window missing? (Wed May 27 2009 - 15:17:40 CDT)
- Re: namdenergy (Mon May 11 2009 - 12:29:37 CDT)
- namdenergy (Thu May 07 2009 - 17:26:23 CDT)
- Re: setbonds (Wed Apr 22 2009 - 14:53:11 CDT)
- Re: density profiles (Wed Apr 22 2009 - 12:25:59 CDT)
- setbonds (Tue Apr 21 2009 - 23:01:35 CDT)
- draw command with different material (Thu Feb 26 2009 - 23:31:08 CST)
- Re: multiple colors for a single atom (Mon Feb 23 2009 - 11:55:48 CST)
- multiple colors for a single atom (Mon Feb 23 2009 - 00:05:50 CST)
- Re: helicity score? (Thu Feb 19 2009 - 15:14:45 CST)
- Re: Cannot read MSMS facet file (Mon Feb 16 2009 - 17:05:31 CST)
- Cannot read MSMS facet file (Sun Feb 15 2009 - 23:54:52 CST)
- pictures with frame (Tue Feb 03 2009 - 01:40:32 CST)
- helicity score? (Thu Jan 15 2009 - 23:39:21 CST)
- Re: beta column format in PDB (Wed Dec 24 2008 - 14:57:47 CST)
- beta column format in PDB (Wed Dec 24 2008 - 13:41:23 CST)
- How to get all the angle combinations? (Wed Dec 17 2008 - 23:07:16 CST)
- How to get number of electrons of an atom in VMD? (Mon Dec 08 2008 - 15:31:42 CST)
- Re: CG bead definition (Mon Nov 24 2008 - 18:24:35 CST)
- CG bead definition (Sun Nov 23 2008 - 23:56:12 CST)
- Re: how to run catdcd from within a proc (Mon Nov 17 2008 - 11:25:32 CST)
- intersurf in vmd (Sat Oct 11 2008 - 14:58:14 CDT)
- lipid tail selection (Sun Oct 05 2008 - 01:16:45 CDT)
- TAB key in vmd terminal (Thu Oct 02 2008 - 23:32:00 CDT)
bio lab
- Re: superimposing groups of three atoms (Fri Oct 21 2011 - 12:10:51 CDT)
- superimposing groups of three atoms (Thu Oct 20 2011 - 06:25:46 CDT)
biocore_at_ks.uiuc.edu
- ANN: BioCoRE now includes remote job submission (Fri Mar 30 2001 - 13:26:32 CST)
Biomolecular Simulations Congress 2005
- Biomolecular Simulations Meeting Bordeaux, 2&3 Sept. 2005 (Tue Mar 22 2005 - 08:19:24 CST)
BIPLAB NANDI
- PSF Generation (Mon Feb 15 2010 - 23:10:53 CST)
Birgitte Maria Elisabeth Brydsoe
- Re: IED 2.02 and VMD 1.8.7 (Wed Oct 13 2010 - 09:47:39 CDT)
- Re: IED 2.02 and VMD 1.8.7 (Wed Oct 13 2010 - 09:28:13 CDT)
- IED 2.02 and VMD 1.8.7 (Wed Oct 13 2010 - 08:33:00 CDT)
- IED/Tkinter problems (Fri Sep 24 2010 - 09:13:43 CDT)
Bishop, Thomas C
- VMD on Suse 11.1 w/ NVIDIA dies. (Fri Sep 04 2009 - 17:52:35 CDT)
- RE: Periodic Bonding (Thu Aug 13 2009 - 14:46:24 CDT)
- RE: Load multiple files (Thu Feb 12 2009 - 11:18:57 CST)
- Re: Re: namd-l: Truncated Octahedron for VMD and NAMDsimulation (Fri May 16 2008 - 13:39:16 CDT)
bizoniusz_at_o2.pl
- trajectory2 (Mon Feb 06 2006 - 14:55:20 CST)
- trajectory (Mon Feb 06 2006 - 12:02:27 CST)
- rdf.tcl one more time (Mon Oct 17 2005 - 10:19:28 CDT)
- RDF.tcl (Fri Oct 14 2005 - 07:02:26 CDT)
Bjoern Olausson
- Re: VMD 1.9.1 beta 1 posted for download... (Tue Jan 03 2012 - 01:32:26 CST)
- Re: Povray renders labels always centered (Tue Dec 13 2011 - 09:31:52 CST)
- Povray renders labels always centered (Mon Dec 12 2011 - 01:37:04 CST)
- Re: Rendering long and high-quality movies from VMD (Wed Dec 07 2011 - 10:58:01 CST)
- Re: VMD never finishes reading vis. state file, stalls and hoggs CPU (Wed Nov 30 2011 - 10:11:53 CST)
- Re: VMD never finishes reading vis. state file, stalls and hoggs CPU (Mon Nov 28 2011 - 02:54:17 CST)
- Re: VMD never finishes reading vis. state file, stalls and hoggs CPU (Fri Nov 25 2011 - 05:36:26 CST)
- VMD never finishes reading vis. state file, stalls and hoggs CPU (Fri Nov 25 2011 - 00:51:07 CST)
- Re: RMSD Tool failes with MOL ID > 999 (Tue Nov 15 2011 - 02:38:34 CST)
- Re: Re: Save "Visulaization State" from within Tk Console (Mon Nov 14 2011 - 01:17:02 CST)
- Re: Save "Visulaization State" from within Tk Console (Fri Nov 11 2011 - 07:48:03 CST)
- Save "Visulaization State" from within Tk Console (Fri Nov 11 2011 - 07:41:18 CST)
- RMSD Tool failes with MOL ID > 999 (Fri Nov 11 2011 - 05:52:11 CST)
- Re: Suppress "Info)" messages (Mon Nov 07 2011 - 18:26:50 CST)
- Re: Suppress "Info)" messages (Mon Nov 07 2011 - 13:15:59 CST)
- Suppress "Info)" messages (Mon Nov 07 2011 - 11:56:06 CST)
- Re: average pdb from dcd file (Thu Oct 27 2011 - 09:54:06 CDT)
- Re: convert pdb format to normal pdb format (Wed Aug 24 2011 - 06:10:45 CDT)
- Re: Understand a script (Thu Jul 28 2011 - 03:28:41 CDT)
- Re: Understand a script (Mon Jul 25 2011 - 10:05:59 CDT)
- Re: File as video (Tue Jul 05 2011 - 03:33:13 CDT)
- Re: saving dcd with less frames (Tue Jun 07 2011 - 05:27:58 CDT)
- Re: size for render (Tue May 24 2011 - 06:34:49 CDT)
- Re: hi to all (Thu May 19 2011 - 04:15:26 CDT)
- Re: PhD position in Computational Structural Biology at MPI Muenster (Fri May 13 2011 - 13:23:05 CDT)
- VMD Movie Generator problem with "Image smoothing" set (Mon May 02 2011 - 06:26:54 CDT)
- Re: Re: VMD 1.9 beta 1 posted for download... (Thu Feb 17 2011 - 05:37:48 CST)
- Re: Draw a box cell for a crystal (Wed Sep 15 2010 - 08:19:32 CDT)
- Re: color charmm dcd by kinetic energy (Tue Jul 06 2010 - 02:51:24 CDT)
- Re: Visualize intersection of overlapping spheres? (Thu Jun 03 2010 - 02:24:02 CDT)
- Visualize intersection of overlapping spheres? (Wed Jun 02 2010 - 06:51:56 CDT)
- Re: Modelling program that does hydrogen adjust (Fri May 28 2010 - 06:14:24 CDT)
- Re: Creating AVI movies (Mon May 10 2010 - 08:37:58 CDT)
- Re: How to remove hydrogens from a pdb file? (Fri May 07 2010 - 02:41:51 CDT)
- Re: Coloring atoms based on timeframe range? (Fri Apr 23 2010 - 04:01:19 CDT)
- Re: Coloring atoms based on timeframe range? (Thu Apr 22 2010 - 10:41:46 CDT)
- Coloring atoms based on timeframe range? (Thu Apr 22 2010 - 08:51:34 CDT)
- Re: High quality movies, bmp frames and videomach=poor quality (Wed Apr 21 2010 - 08:34:00 CDT)
- Re: question about vmd use (Mon Apr 12 2010 - 06:16:42 CDT)
- Re: Way to change ColorScale Method to single color gradient? (Thu Apr 08 2010 - 02:18:05 CDT)
- Re: Way to change ColorScale Method to single color gradient? (Wed Apr 07 2010 - 08:05:07 CDT)
- Way to change ColorScale Method to single color gradient? (Wed Apr 07 2010 - 03:33:18 CDT)
- Wrapping membrane to center of PBC-Box (Tue Mar 23 2010 - 12:06:31 CDT)
- Re: Curious about analytical capabilities of VMD (Mon Jul 06 2009 - 07:10:37 CDT)
- Re: Curious about analytical capabilities of VMD (Wed Jul 01 2009 - 07:19:39 CDT)
- Re: Curious about analytical capabilities of VMD (Mon Jun 29 2009 - 05:29:33 CDT)
- Curious about analytical capabilities of VMD (Fri Jun 26 2009 - 03:48:05 CDT)
- Re: Transparency settings (Thu Jun 11 2009 - 06:09:15 CDT)
- Re: Transparency settings (Wed Jun 10 2009 - 10:29:08 CDT)
- Transparency settings (Wed Jun 10 2009 - 09:13:13 CDT)
Bjoern Windshuegel
- viewing insight trajectories with vmd (Tue Jun 25 2002 - 01:29:15 CDT)
Björn Windshügel
- Re: GRID maps visualization problems (Tue Nov 24 2009 - 12:22:47 CST)
- Rotation of molecules (Tue Dec 02 2008 - 08:20:30 CST)
- Loading multiple molecules in one step / "Apply changes automatically" (Fri Oct 21 2005 - 09:54:59 CDT)
Blake Charlebois
- RE: overlaying more than 2 molecules (Wed Aug 17 2005 - 12:57:30 CDT)
- RE: measuring rotation of protein about an axis (Tue Jul 19 2005 - 11:28:59 CDT)
- RE: (Mon Jul 18 2005 - 16:26:56 CDT)
- RE: Script for automated selection (Mon Jun 20 2005 - 12:28:39 CDT)
- RE: namd-l: tcl question (Thu Jun 16 2005 - 22:32:39 CDT)
- RE: how to write out the coordinates of center of mass of a particularresidue (Wed Jun 01 2005 - 21:39:49 CDT)
- RE: Any way for comparing two structures?? (Tue May 31 2005 - 10:50:32 CDT)
- RE: Total charge query? (Fri May 13 2005 - 17:28:41 CDT)
- RE: Autoionize / SODIUM (Mon Jan 24 2005 - 17:04:58 CST)
- Autoionize / SODIUM (Sun Jan 16 2005 - 12:14:04 CST)
bo baker
- Re: vmd crashes (Mon Mar 09 2009 - 19:09:59 CDT)
- vmd crashes (Mon Mar 09 2009 - 04:49:42 CDT)
- Re: select atoms (Mon Mar 02 2009 - 18:30:29 CST)
- select atoms (Sun Mar 01 2009 - 22:18:42 CST)
- Re: delete residues from trajectory (Sat Feb 28 2009 - 23:06:17 CST)
- delete residues from trajectory (Sat Feb 28 2009 - 03:44:06 CST)
- delete residues from trajectory (Sat Feb 28 2009 - 03:46:20 CST)
- Re: Atom distances from trajotory (Sat Feb 14 2009 - 17:16:27 CST)
- Atom distances from trajotory (Thu Feb 12 2009 - 23:50:21 CST)
- Atom distances from trajotory (Thu Feb 12 2009 - 03:27:20 CST)
- Load multiple files (Wed Feb 11 2009 - 22:43:35 CST)
- Re: Atomselect in NAMD GUI (Wed Feb 11 2009 - 16:01:37 CST)
- Re: Atomselect in NAMD GUI (Sun Feb 08 2009 - 16:17:15 CST)
- Atomselect in NAMD GUI (Thu Feb 05 2009 - 05:02:45 CST)
- Problem with Install (Fri Jan 16 2009 - 05:12:34 CST)
- VMD for Linux (Mon Jan 12 2009 - 05:14:50 CST)
- Re: QM Geometry optimization (Wed Dec 17 2008 - 12:30:08 CST)
- QM Geometry optimization (Tue Dec 16 2008 - 23:59:49 CST)
- convert THR and SER to the phosphorylated forms (Tue Oct 21 2008 - 19:06:11 CDT)
- Interface Propensity (Wed Sep 17 2008 - 05:56:20 CDT)
- Re: save selected residues (Mon Aug 11 2008 - 06:31:12 CDT)
- save selected residues (Sun Aug 10 2008 - 06:04:37 CDT)
- Re: Problem with saving coordinate (Sun Sep 02 2007 - 20:18:13 CDT)
- Re: Problem with saving coordinate (Sat Sep 01 2007 - 18:49:57 CDT)
- Re: Problem with saving coordinate (Fri Aug 31 2007 - 01:55:26 CDT)
- Problem with saving coordinate (Thu Aug 30 2007 - 22:44:57 CDT)
Bo HÃ¸jen Justesen
- Hi all, (Mon Oct 31 2011 - 05:47:22 CDT)
Bo Højen Justensen
- SV: average area per lipid (Tue Mar 04 2008 - 02:33:11 CST)
- VS: average area per lipid (Mon Mar 03 2008 - 15:10:09 CST)
Bo Liu
- Re: fit.tcl (Mon Nov 08 2010 - 09:23:24 CST)
- Re: Autoionize plugin (Wed Nov 19 2008 - 08:42:58 CST)
- Re: Catdcd? (Fri Oct 17 2008 - 00:01:59 CDT)
- Re: Windows version: Loading/writing files (Mon Oct 13 2008 - 09:50:41 CDT)
- Re: atom type (Fri Oct 03 2008 - 06:51:22 CDT)
- Re: Projection of a vector on to another. (Sat Sep 20 2008 - 06:09:46 CDT)
- Re: Projection of a vector on to another. (Fri Sep 19 2008 - 23:03:42 CDT)
- Re: namd-l: Re: counting gas molecules inside the nanotube (Fri Sep 19 2008 - 11:38:19 CDT)
- Re: Merge psf and pdb (Wed Sep 03 2008 - 00:17:13 CDT)
- Re: Merge psf and pdb (Tue Sep 02 2008 - 10:02:26 CDT)
- Re: TXT program editor (Fri Aug 29 2008 - 03:17:57 CDT)
- Re: namd-l: diffusion coefficient from rmsd (Thu Aug 28 2008 - 01:38:38 CDT)
- questions relating to VolMapTool (Wed Jul 23 2008 - 02:35:18 CDT)
- Fwd: memory overflow problem of Tcl scripting when dealing with trajectories(sorry for cross mailing...) (Wed Jul 16 2008 - 03:18:43 CDT)
- Re: namd-l: Energy plot script (Thu May 15 2008 - 13:00:23 CDT)
Boaz Shaanan
- Re: Stereo in linux/oxygen gvx1/xig driver (Thu Jan 24 2002 - 03:30:25 CST)
- Stereo in linux/oxygen gvx1/xig driver (Sat Jan 19 2002 - 06:35:50 CST)
Bob Johnson
- Deleting/modifying specific molecule representations (Tue Jun 01 2010 - 11:23:58 CDT)
- Re: Problems with licorice representation when rendering 3D PDF for Power Point (Fri Apr 23 2010 - 09:59:08 CDT)
- Problems with licorice representation when rendering 3D PDF for Power Point (Thu Apr 22 2010 - 14:56:52 CDT)
- Matrix: Warning: no convergence (0.00000000<390.26229858 after 1000 iterations). (Tue Nov 03 2009 - 14:49:29 CST)
- Re: Unable to find Stride output file: /usr/tmp/... (Tue Oct 27 2009 - 12:42:06 CDT)
- Unable to find Stride output file: /usr/tmp/... (Tue Oct 27 2009 - 12:22:03 CDT)
- Re: Unable to find Stride output file: /usr/tmp/... (Tue Oct 27 2009 - 12:47:55 CDT)
- Storing multiple values in the user field (Fri Sep 28 2007 - 16:15:05 CDT)
- Amber patches for Auto PSF generator (Wed Jun 27 2007 - 11:55:44 CDT)
- Using VolMap tool for charge density visualization (Fri Jun 01 2007 - 09:59:47 CDT)
- RMSD fitting for molecules adsorbed to surfaces (Thu May 10 2007 - 16:12:09 CDT)
- Re: Scripts to unwrap PBC from REMD trajectory (Fri Mar 16 2007 - 09:05:18 CDT)
- Scripts to unwrap PBC from REMD trajectory (Thu Mar 15 2007 - 16:08:50 CDT)
- Delete Volume Maps via Script (Wed Feb 28 2007 - 18:36:43 CST)
- Calculate VolMap for every frame by a script (Tue Feb 27 2007 - 16:21:12 CST)
- Reading box info. from PQR file (Mon Oct 30 2006 - 10:02:43 CST)
- Error in visualizing the 5 prime end of DNA strand (Mon Aug 29 2005 - 10:56:06 CDT)
- VMD fails to run (Sat Aug 20 2005 - 21:43:55 CDT)
- Periodic boundary conditions (Thu Aug 18 2005 - 12:00:19 CDT)
- Problem with DNA bonds (Mon Aug 15 2005 - 13:54:28 CDT)
- Visualizing an infinite carbon nanotube (Mon Aug 15 2005 - 13:23:44 CDT)
- Draw Bonds (Mon Aug 08 2005 - 10:42:13 CDT)
- Video card driver (Thu Aug 04 2005 - 13:56:44 CDT)
Bob Milius
- Re: vmd, linux & dri (fwd) (Fri Jan 12 2001 - 19:39:34 CST)
- Re: vmd, linux & dri (fwd) (Fri Jan 12 2001 - 19:29:20 CST)
Bob Wohlhueter
- upgrading vmd's nvidia component (Thu Aug 05 2010 - 16:04:53 CDT)
Bobbie Horton
- Play at the world's leading online casino..... (Thu Apr 10 2008 - 01:28:24 CDT)
Bogdan Costescu
- Re: using xtc file to generate pdb's (Wed Dec 28 2011 - 07:01:39 CST)
- Re: How to parse very large trajectories? (Thu Nov 10 2011 - 08:20:41 CST)
- Re: Dynamic lines (Wed Nov 02 2011 - 13:42:01 CDT)
- Dynamic lines (Mon Oct 31 2011 - 13:21:59 CDT)
- Re: Plot a time line in the movie made with VMD (Wed Dec 01 2010 - 15:44:56 CST)
- Re: VMD and named pipes (Sat Sep 04 2010 - 05:26:52 CDT)
- Re: Matrix based intermediate rotations (Sat Sep 04 2010 - 05:35:41 CDT)
- Matrix based intermediate rotations (Fri Sep 03 2010 - 05:50:40 CDT)
- Re: VMD and named pipes (Thu Sep 02 2010 - 23:51:23 CDT)
- Re: Is it possible to load a part of a big xtc file faster... (Wed Aug 18 2010 - 10:50:43 CDT)
- Re: Focal blur with Tachyon (Fri Jul 30 2010 - 04:49:55 CDT)
- Re: Re: LANG setting needs to be solved in next release.... (Thu May 20 2010 - 08:47:06 CDT)
- Re: LANG setting needs to be solved in next release.... (Wed May 19 2010 - 09:14:27 CDT)
- Re: LANG setting needs to be solved in next release.... (Wed May 19 2010 - 08:34:38 CDT)
- Re: Re: vmd 1.8.7 on Intel 64 bit: segmentation fault (Mon Dec 14 2009 - 06:21:14 CST)
- Re: Re: vmd 1.8.7 on Intel 64 bit: segmentation fault" (Thu Dec 10 2009 - 06:14:34 CST)
- Re: charmm binary ele. pot. (Mon Mar 09 2009 - 13:16:00 CDT)
- Re: duration of video mpeg (Mon Dec 04 2006 - 05:18:53 CST)
- Re: loading gzipped trajectories into vmd (Tue Aug 29 2006 - 09:38:42 CDT)
- Re: Solutions for stereo - is CRT technology dead? (Mon May 22 2006 - 06:27:49 CDT)
- Re: libcprts.so.6 not found by VMD on RedHat EL3 (ia64). (Mon Apr 10 2006 - 11:23:46 CDT)
- Re: shutter glasses with VMD (Thu Mar 02 2006 - 07:05:36 CST)
- Re: Tachyon and text rendering (Thu Feb 23 2006 - 14:37:56 CST)
- Re: vmd-1.8.4b10/Linux amd64 only libstdc++.so.6 dependancy (Fri Feb 10 2006 - 12:05:03 CST)
- Re: vmd-1.8.4b10/Linux amd64 only libstdc++.so.6 dependancy (Thu Feb 09 2006 - 11:43:52 CST)
- Re: vmd-1.8.4b10/Linux amd64 only libstdc++.so.6 dependancy (Thu Feb 09 2006 - 10:51:55 CST)
- Re: compilation from source: make error message (Mon Dec 12 2005 - 06:04:24 CST)
- Re: compilation from source: first attempt failed (Fri Dec 09 2005 - 10:30:07 CST)
- Re: babel compilation error (Fri Dec 09 2005 - 10:04:22 CST)
- Re: MSMS problem (Wed Dec 07 2005 - 06:56:06 CST)
- Re: MSMS problem (Tue Dec 06 2005 - 11:31:53 CST)
- Re: MSMS problem (Mon Dec 05 2005 - 13:21:19 CST)
- Re: dcd large files, charmm-VMD (Fri Apr 22 2005 - 11:08:13 CDT)
- Re: dcd large files, charmm-VMD (Fri Apr 22 2005 - 08:09:11 CDT)
- Re: compressed trajectory support (Mon Apr 18 2005 - 09:57:14 CDT)
- Re: compressed trajectory support (Mon Apr 18 2005 - 09:20:00 CDT)
- Re: 3D/stereo hardware recommendations wanted!!! (Fri Jan 14 2005 - 04:51:45 CST)
- Re: Fwd: linux FC3 VMD vs insightII conflict (Wed Jan 12 2005 - 11:08:45 CST)
- Re: vmd not starting up on Fedora core 3 linux , nVidia quadro 980 XGL, nVidia 6629 driver (Tue Jan 11 2005 - 10:42:25 CST)
- Re: vmd not starting up on Fedora core 3 linux , nVidia quadro 980 XGL, nVidia 6629 driver (Mon Jan 10 2005 - 09:56:14 CST)
- Re: VMD on Linux Fedora Core 2 (Wed Oct 13 2004 - 09:11:15 CDT)
- Re: vmd psfgen problem with CHARMM (Thu Jul 15 2004 - 16:21:22 CDT)
- Re: vmd psfgen problem with CHARMM (Thu Jul 15 2004 - 13:46:26 CDT)
- Re: vmd psfgen problem with CHARMM (Thu Jul 15 2004 - 12:41:16 CDT)
- Re: mpeg doesn't run on media player (Fri Jun 25 2004 - 04:54:56 CDT)
- RE: How to read i8(64 bit) .dcd file with 32 bit VMD (Mon May 24 2004 - 03:24:33 CDT)
- RE: How to read i8(64 bit) trajectory (.dcd) file with 32 bit VMD (Mon May 24 2004 - 03:32:12 CDT)
- Re: vmd 1.8.2 - slow on linux (Wed May 12 2004 - 07:26:11 CDT)
- Re: dcd with fixed atoms (Wed Mar 17 2004 - 13:05:14 CST)
- Re: digest form (Wed Mar 17 2004 - 05:10:43 CST)
- Re: random graphics outages on startup (Wed Feb 04 2004 - 10:47:59 CST)
- RE: dcd reading error (Sat Jan 03 2004 - 10:07:49 CST)
- Re: quicktime/mpeg movies (Fri Jun 20 2003 - 14:30:24 CDT)
- Re: double image for one eye with crystal eyes stereo (Thu Jun 12 2003 - 11:02:01 CDT)
- Re: double image for one eye with crystal eyes stereo (Thu Jun 12 2003 - 10:41:47 CDT)
- Re: double image for one eye with crystal eyes stereo (Thu Jun 12 2003 - 09:34:36 CDT)
- Re: Some comments about stereo with nvidia cards & shutter glasses (Mon May 05 2003 - 11:58:14 CDT)
- Re: Raytracing with tachyon/povray because of pb with raster3d (Tue Nov 26 2002 - 12:58:40 CST)
- Re: Raytracing with tachyon/povray because of pb with raster3d (Tue Nov 26 2002 - 11:41:38 CST)
- Re: SGI O2 stereo problems (Thu Mar 09 2000 - 08:00:27 CST)
- Re: SGI O2 stereo problems (Wed Mar 08 2000 - 14:43:38 CST)
- SGI O2 stereo problems (Tue Feb 15 2000 - 13:33:15 CST)
Bogdan Tarus
- Re: vmd crash at start (Thu Jun 17 2010 - 12:16:06 CDT)
- vmd crash at start (Thu Jun 17 2010 - 10:33:35 CDT)
Bongkeun Kim
- Re: Transparent image render problem after vmd 1.9 version (Wed Apr 06 2011 - 11:51:43 CDT)
- Transparent image render problem after vmd 1.9 version (Wed Apr 06 2011 - 01:22:21 CDT)
bonicoli_at_loria.fr
- Re: property iterate over a range (representation / draw style) (Wed Feb 04 2009 - 10:04:40 CST)
- property iterate over a range (representation / draw style) (Tue Feb 03 2009 - 11:16:12 CST)
bora erdemli
- BPS Meeting @ Baltimore (Mon Mar 05 2007 - 19:16:40 CST)
- rmsf calculations (Tue Feb 27 2007 - 01:42:25 CST)
- Re: measure hbonds (Fri Jan 28 2005 - 06:38:12 CST)
- BOND CP2 - CT2 IN PARAMETER FILES (Thu Oct 28 2004 - 16:42:09 CDT)
- Re: measure fit error?? (Fri Oct 08 2004 - 12:29:22 CDT)
- Re: problem in autoionize (Fri Oct 01 2004 - 00:23:58 CDT)
- Re: problem in autoionize (Thu Sep 30 2004 - 08:00:18 CDT)
- Re: problem in autoionize (Thu Sep 30 2004 - 01:38:51 CDT)
- problem in autoionize (Wed Sep 29 2004 - 08:43:05 CDT)
- rmsd calculation and alignment (Tue Sep 28 2004 - 07:28:15 CDT)
- torsion angle (Mon Sep 06 2004 - 06:18:22 CDT)
- rmsd problem,script and version (Fri Sep 03 2004 - 00:23:42 CDT)
- rmsd problem (Thu Aug 26 2004 - 14:10:05 CDT)
- Re: monitoring h bonds (Tue Aug 24 2004 - 06:52:50 CDT)
- monitoring h bonds (Wed Aug 18 2004 - 08:59:56 CDT)
Boris Steipe
- Re: Maximum length of an extended peptide? (Tue Nov 15 2011 - 22:29:42 CST)
- Re: shades of licorice representation (Tue Jul 19 2011 - 10:10:01 CDT)
- Re: volume of hydration shells (Thu Jun 23 2011 - 09:00:10 CDT)
- Re: how to display bond btw backbone atom and sidechain atom (Wed Nov 24 2010 - 07:57:41 CST)
- Re: Real-time ambient occlusion lighting (Tue Oct 12 2010 - 19:07:16 CDT)
- Multimodel PDB files with different models (again)? (Tue May 18 2010 - 16:19:46 CDT)
- Re: Multiseq question (Mon Nov 23 2009 - 09:48:34 CST)
- Re: conformations of a linker (Fri Oct 31 2008 - 16:39:17 CDT)
- Re: atom type (Wed Oct 01 2008 - 11:37:48 CDT)
- Re: multiple attempts before vmd starts up (Thu Oct 18 2007 - 13:47:21 CDT)
- Re: multiple attempts before vmd starts up (Thu Oct 18 2007 - 00:07:55 CDT)
bozell, joe
- Problems with Mac OSX VMD and certain PDB files (Wed Nov 24 2004 - 12:34:47 CST)
brad noyes
- Re: compile VMD on freebsd 4.8 (Tue Sep 09 2003 - 21:05:44 CDT)
- Re: compile VMD on freebsd 4.8 (Tue Sep 09 2003 - 16:43:10 CDT)
- Re: compile VMD on freebsd 4.8 (Thu Jul 24 2003 - 17:54:42 CDT)
- Re: compile VMD on freebsd 4.8 (Wed Jul 23 2003 - 20:59:27 CDT)
- render to png, and ppm (Sun Jul 13 2003 - 20:47:15 CDT)
- Re: implicit casting (Fri May 23 2003 - 15:25:40 CDT)
- implicit casting (Fri May 23 2003 - 15:14:27 CDT)
- Re: compiling/porting vmd (Fri May 23 2003 - 01:30:18 CDT)
- compiling/porting vmd (Thu May 22 2003 - 22:23:25 CDT)
Bram Stolk
- Re: L/R lighting discrepancy (Thu Nov 10 2005 - 06:48:47 CST)
- Re: L/R lighting discrepancy (Wed Nov 09 2005 - 04:51:10 CST)
- Re: L/R lighting discrepancy (Tue Nov 08 2005 - 14:01:25 CST)
- L/R lighting discrepancy (Tue Nov 08 2005 - 10:44:39 CST)
- Re: IRIX6 build from CVS (Tue Nov 08 2005 - 10:20:10 CST)
- IRIX6 build from CVS (Tue Nov 08 2005 - 03:28:25 CST)
Branko
- Re: rgyr calculation problem (Fri Nov 19 2010 - 12:44:50 CST)
- Re: rgyr calculation problem (Wed Nov 10 2010 - 13:04:31 CST)
- Re: rgyr calculation problem (Wed Nov 10 2010 - 11:50:30 CST)
- Re: rgyr calculation problem (Wed Nov 10 2010 - 11:06:22 CST)
- rgyr calculation problem (Fri Nov 05 2010 - 16:21:05 CDT)
BRAULIO FAVIÁN VALDEBENITO MATURANA
- Protein cavities (Thu May 26 2011 - 12:41:48 CDT)
BRAULIO VALDEBENITO MATURANA
- Re: Protein cavities (Sun May 29 2011 - 16:42:33 CDT)
- Protein cavities (Sat May 28 2011 - 23:26:02 CDT)
Breght Boschker
- Eye position / camera position (Thu Jun 02 2005 - 05:27:49 CDT)
Brendan O'Malley
- Postdoctoral positions in Australia (Wed Nov 06 2002 - 04:55:13 CST)
- VMD and Trackers (Sun Jul 14 2002 - 19:22:45 CDT)
- Tracking devices and VMD (Mon Jun 17 2002 - 04:15:07 CDT)
- vmd stereo (Sun Oct 29 2000 - 19:27:16 CST)
Brett Pemberton
- Re: VMD crashed due to: vmd_LINUXAMD64: indirect_vertex_array.c:659: emit_DrawArrays_old: Assertion `elements_per_request >= count' failed (Tue Jun 27 2006 - 22:37:59 CDT)
- Re: VMD crashed due to: vmd_LINUXAMD64: indirect_vertex_array.c:659: emit_DrawArrays_old: Assertion `elements_per_request >= count' failed (Tue Jun 27 2006 - 20:59:56 CDT)
- Re: VMD crashed due to: vmd_LINUXAMD64: indirect_vertex_array.c:659: emit_DrawArrays_old: Assertion `elements_per_request >= count' failed (Tue Jun 27 2006 - 18:57:15 CDT)
- VMD crashed due to: vmd_LINUXAMD64: indirect_vertex_array.c:659: emit_DrawArrays_old: Assertion `elements_per_request >= count' failed (Tue Jun 27 2006 - 00:52:41 CDT)
Brian Bennion
- Re: X_ChangeProperty: BadValue (integer parameter out of range for operation) 0x40 (Mon Jan 07 2008 - 10:58:36 CST)
- Re: Installation and running on VMD on Debian Testing System (Wed Oct 03 2007 - 09:51:54 CDT)
- Re: Loading up PDB files in absolute coordinates (Fri Jun 22 2007 - 15:34:28 CDT)
- Re: calculating b-factors from trajectories (Wed May 23 2007 - 10:34:57 CDT)
- Re: superimposing two structures and getting the coordinates (Tue Feb 20 2007 - 14:44:17 CST)
- autopsf errors in vmd1.8.5 (Mon Oct 30 2006 - 12:09:54 CST)
- Re: about maximum number of atoms (Wed Aug 02 2006 - 17:55:28 CDT)
- Re: RMSF ? (Wed Jun 21 2006 - 10:10:08 CDT)
- Re: fading rep scripts (Mon Jun 12 2006 - 17:48:21 CDT)
- fading rep scripts (Mon Jun 12 2006 - 16:41:38 CDT)
- Re: Possible error in aligning/computing RMSD of 2 molecules with three or two atoms (Thu Mar 23 2006 - 17:22:15 CST)
- Re: Poor Hydrogen Placement in AutoPSF (Mon Mar 20 2006 - 16:54:20 CST)
- Re: Poor Hydrogen Placement in AutoPSF (Mon Mar 20 2006 - 10:27:52 CST)
- Poor Hydrogen Placement in AutoPSF (Fri Mar 17 2006 - 16:39:15 CST)
- batchmode use of "labels" functions? (Fri Feb 10 2006 - 11:59:32 CST)
- Re: Generating an average structure from a trajectory (Fri Sep 16 2005 - 18:22:43 CDT)
- Re: catdcd vs readdcd.h error checking (Sat Aug 20 2005 - 11:22:16 CDT)
- catdcd vs readdcd.h error checking (Fri Aug 19 2005 - 11:53:55 CDT)
- Re: Adjacent surface? (Thu Aug 18 2005 - 14:24:07 CDT)
- Re: help with BIOMT (Fri Aug 12 2005 - 15:52:25 CDT)
- Re: namd-l: volume from VMD and NAMD different? (Fri Aug 05 2005 - 17:38:27 CDT)
- volume from VMD and NAMD different? (Fri Aug 05 2005 - 16:12:34 CDT)
- Re: Video card driver (Thu Aug 04 2005 - 17:05:05 CDT)
- vmd mpg movies not working in office 2000 (Tue Jul 12 2005 - 17:36:52 CDT)
- Re: Problem with "bigdcd" (Thu Apr 28 2005 - 12:33:59 CDT)
- Re: namd-l: Re: Interactive Simulations, ligand size limits.... (Thu Apr 28 2005 - 12:01:32 CDT)
- Re: Catching error info before it shuts down ... (Fri Feb 18 2005 - 10:01:32 CST)
- Re: PBS script for LINUX cluster (Tue Jan 18 2005 - 10:25:05 CST)
- Re: ERROR) Failed to create Surf atom radii input file (Tue Dec 28 2004 - 11:16:46 CST)
- Re: (Tue Dec 14 2004 - 12:47:07 CST)
- RE: MSMS variable (Tue Nov 30 2004 - 16:48:21 CST)
- RE: MSMS variable (Tue Nov 30 2004 - 13:15:47 CST)
- RE: MSMS variable (Wed Nov 24 2004 - 16:23:55 CST)
- Re: MSMS variable (Wed Nov 24 2004 - 10:13:23 CST)
- Re: Question about using psfgen on protein 4HVP (Tue Oct 26 2004 - 15:02:51 CDT)
- Re: VMD on Linux Fedora Core 2 (Wed Oct 13 2004 - 12:26:39 CDT)
- Re: PSFGEN problem (Fri Oct 08 2004 - 21:58:07 CDT)
- Re: dihedral angles at the ends (Tue Oct 05 2004 - 11:44:53 CDT)
- Re: Re: Installation on vmd-1.8 on mandrake10 (Fri Aug 27 2004 - 10:06:03 CDT)
- Re: makefile not generated from configure (Thu Aug 19 2004 - 12:24:13 CDT)
- Re: Solvating with TIP4 or SPC (Wed Aug 04 2004 - 10:43:19 CDT)
- Re: Box of non-polar solvent (Fri Jul 16 2004 - 13:35:28 CDT)
- Re: Box of non-polar solvent (Fri Jul 16 2004 - 13:13:01 CDT)
- Re: CONECT in pdb files (Fri Jul 02 2004 - 18:01:58 CDT)
- Re: Compile from Source Crashes 5/11/04 (Tue May 11 2004 - 16:26:33 CDT)
- Re: vmd 1.8.2 - slow on linux (Tue May 11 2004 - 15:25:45 CDT)
- Re: Compile from Source Crashes 5/11/04 (Tue May 11 2004 - 11:22:20 CDT)
- RE: Selection problem on TkCon (Tue May 04 2004 - 13:20:20 CDT)
- RE: Selection problem on TkCon (Mon May 03 2004 - 14:14:10 CDT)
- RE: Selection problem on TkCon (Mon May 03 2004 - 10:14:02 CDT)
- Re: vmd linux binary / native build on netbsd (Mon Apr 19 2004 - 12:25:21 CDT)
- Re: vmd linux binary / native build on netbsd (Fri Apr 16 2004 - 13:12:13 CDT)
- Re: Webpdb crashing (Fri Apr 16 2004 - 13:13:06 CDT)
- Re: Webpdb crashing (Fri Apr 16 2004 - 11:22:50 CDT)
- Re: Webpdb crashing (Fri Apr 16 2004 - 11:48:55 CDT)
- Re: psfgen question (Thu Mar 25 2004 - 11:42:45 CST)
- Re: Solvate Package (Wed Mar 17 2004 - 11:39:15 CST)
- Re: loading PDB+PSF (Tue Mar 16 2004 - 11:00:18 CST)
- Re: VMD as command line interface (Thu Mar 11 2004 - 10:24:31 CST)
- RE: gziped files (Tue Mar 09 2004 - 13:38:44 CST)
- RE: gziped files (Tue Mar 09 2004 - 13:29:03 CST)
- Re: gziped files (Tue Mar 09 2004 - 11:08:55 CST)
- Re: numeric python (Mon Mar 08 2004 - 10:07:17 CST)
- Re: athlon64 version of vmd (Fri Mar 05 2004 - 16:30:57 CST)
- Re: Non-serious query (Wed Mar 03 2004 - 11:23:33 CST)
- Re: removing surrounding water molecules (Fri Feb 13 2004 - 16:53:24 CST)
- Re: attempting to source a script (Wed Feb 11 2004 - 16:49:41 CST)
- Re: bigdcd (Wed Nov 05 2003 - 17:52:38 CST)
- Re: installation problem (Tue Nov 04 2003 - 10:16:20 CST)
- Re: secondary structure update (Mon Nov 03 2003 - 11:19:28 CST)
- Re: secondary structure update (Fri Oct 31 2003 - 12:18:34 CST)
- Re: secondary structure update (Fri Oct 31 2003 - 10:12:40 CST)
- Re: accessing VMD help (Fri Oct 31 2003 - 10:14:42 CST)
- Re: VMD and Chromium (Thu Oct 30 2003 - 14:46:37 CST)
- Re: aminoacid mutation (Tue Oct 28 2003 - 10:22:38 CST)
- Re: vmd 1.8.2b3 (September 16, 2003) on freebsd (Tue Sep 16 2003 - 23:05:07 CDT)
- Re: AtomLexer/lex.yy.c error (Tue Sep 16 2003 - 10:37:28 CDT)
- Re: trio program (Tue Sep 16 2003 - 10:17:13 CDT)
- Re: AtomLexer/lex.yy.c error (Tue Sep 16 2003 - 10:06:33 CDT)
- Re: trio program (Fri Sep 12 2003 - 11:00:17 CDT)
- Re: loading trj file (Fri Sep 12 2003 - 09:59:35 CDT)
Brian Corrie
- Run time error on Max Impact (Wed Apr 16 1997 - 01:16:40 CDT)
Brian Dotson
- Viewing an SDF file in VMD (Thu Jun 30 2005 - 07:54:31 CDT)
- Re: Using VMD with Chromium (Wed Mar 03 2004 - 07:22:01 CST)
- RE: Using VMD with Chromium (Tue Mar 02 2004 - 06:12:42 CST)
- Using VMD with Chromium (Mon Mar 01 2004 - 06:59:34 CST)
Brian Kidd
- creating videos where the representation changes throughout (Thu Feb 19 2009 - 23:30:20 CST)
- using the beta and occupancy columns as state variables (Tue Oct 28 2008 - 00:42:41 CDT)
- periodic box image in tcl script (Mon Sep 29 2008 - 11:27:39 CDT)
- vmd MacOSX using dispdev (Thu Jul 17 2008 - 18:08:03 CDT)
- Re: Mac OSX TK console issues (Fri Jun 15 2007 - 14:57:16 CDT)
- atomselection question (Tue May 22 2007 - 18:55:55 CDT)
- question about setting variables in a loop (Mon Jan 08 2007 - 22:01:12 CST)
- .vmdrc (Wed Jun 21 2006 - 18:26:48 CDT)
- color protein based on an event during a trajectory (Wed Jun 07 2006 - 21:33:39 CDT)
- Re: fedora core 5 and VMD 1.8.4 (Tue Apr 25 2006 - 23:02:17 CDT)
- Re: fedora core 5 and VMD 1.8.4 (Tue Apr 25 2006 - 20:06:50 CDT)
- fedora core 5 and VMD 1.8.4 (Tue Apr 25 2006 - 18:37:32 CDT)
- Calculate the area of overlap? (Sat May 21 2005 - 02:01:04 CDT)
- wrap ions (Wed Apr 27 2005 - 11:39:35 CDT)
- determining vdw, elec, and others (Wed Feb 16 2005 - 23:09:12 CST)
Brian Kim
- Re: Use variable in atomselect command (Tue Feb 07 2012 - 19:11:27 CST)
- Re: Use variable in atomselect command (Tue Feb 07 2012 - 16:40:24 CST)
- Use variable in atomselect command (Tue Feb 07 2012 - 15:16:17 CST)
Brian Puchala
- color trajectory using specific values rather than color scale (Mon Jun 27 2011 - 09:55:05 CDT)
Brian Smith
- Contribution of selected atoms to surface (Fri May 04 2007 - 03:12:57 CDT)
- How do I set the color scale for beta? (Fri Sep 24 2004 - 01:43:31 CDT)
Brittany Morgan
- RE: script to resolve trajectory "jumps" on Desmond dynamic (Wed Mar 04 2009 - 11:21:13 CST)
- RE: rna topology and parameters for rna (Mon Oct 29 2007 - 08:20:16 CDT)
brmorgan_at_clarku.edu
- 'gopython' Tkinter and Numeric Python error (Mon Jan 28 2008 - 09:55:36 CST)
- Solvate package (Wed Sep 05 2007 - 13:02:03 CDT)
Brooke Dallas
- Re: Bond Colors (Thu Oct 14 2010 - 11:37:10 CDT)
- Re: Bond Colors (Wed Oct 13 2010 - 11:31:16 CDT)
- Bond Colors (Wed Oct 13 2010 - 08:46:36 CDT)
brosbam_at_berkeley.edu
- autopsf from console (Thu Jul 17 2008 - 12:23:21 CDT)
- purple bacteria and psfgen (Tue Jul 15 2008 - 12:37:30 CDT)
Bruno Luís Pinto de Oliveira
- NAMDenergy plugin_VMD_van der Waal interactions (Wed Feb 08 2012 - 12:40:57 CST)
- NAMDenergy plugin_VMD_van der Waal interactions (Wed Feb 08 2012 - 10:05:41 CST)
- NAMDenergy plugin_VMD_van der Waal interactions (Tue Feb 07 2012 - 09:20:23 CST)
- RE: Visualization of FEP simulation (Fri Oct 21 2011 - 12:37:34 CDT)
- RE: Visualization of FEP simulation (Thu Oct 20 2011 - 06:15:37 CDT)
- Visualization of FEP simulation (Wed Oct 19 2011 - 09:04:06 CDT)
- Visualization of FEP simulation (Thu Sep 08 2011 - 13:24:32 CDT)
- Visualization of FEP simulation (Thu Sep 08 2011 - 12:38:41 CDT)
Bryan Roessler
- Re: Problem with hydration script (Thu Apr 19 2012 - 15:17:35 CDT)
- Problem with hydration script (Thu Apr 19 2012 - 13:17:39 CDT)
- Re: atomselect counting (Thu Feb 02 2012 - 13:20:38 CST)
- Re: Calling all DCD files in a directory sequentially using CatDCD (Mon Jan 23 2012 - 18:24:07 CST)
- Re: Calling all DCD files in a directory sequentially using CatDCD (Mon Jan 23 2012 - 16:15:48 CST)
- Calling all DCD files in a directory sequentially using CatDCD (Mon Jan 23 2012 - 15:11:34 CST)
- Multiple Stream Files: What Order? (Wed Dec 14 2011 - 11:20:25 CST)
- Visualizing Timeline (tml) data w/o having to load trajectories (Thu Oct 27 2011 - 11:34:40 CDT)
Bryce Vang
- Spring quality watches offer (Mon Apr 28 2008 - 12:56:22 CDT)
Buford Granger
- Inexpensive Louis Vuitton bags (Thu Apr 24 2008 - 09:03:05 CDT)
Buford Greene
- No prescr1ption? No problem! (Sat Aug 25 2007 - 09:27:00 CDT)
Burak Cankurtaran
- PDB file (Tue Dec 29 2009 - 05:41:23 CST)
- Re: Isosurface and Fieldlines Not rendered in colour (Tue May 26 2009 - 21:17:36 CDT)
- Isosurface and Fieldlines Not rendered in colour (Tue May 26 2009 - 00:15:44 CDT)
Burcin Temel
- Re: suggested video card for linux (Mon Aug 11 2008 - 12:13:06 CDT)
- suggested video card for linux (Mon Aug 04 2008 - 07:32:03 CDT)
Burgess, Don E
- mutator plugin generates extra bond for tip3 (Fri Sep 30 2011 - 11:49:26 CDT)
- Recent Geforce Cuda GPU cards(GT 440, GTX 560ti) (Wed Apr 13 2011 - 11:26:02 CDT)
Burkhard Heil
- Run Python Scripts in VMD on Mac OS X (Tue Apr 27 2010 - 06:52:50 CDT)
by way of Jeroen Akershoek
- Weird lighting in CAVE (Wed Aug 25 2004 - 03:24:00 CDT)
bybaker_at_itsa.ucsf.edu
- TkCon History (Mon Sep 05 2005 - 03:20:56 CDT)
- Re: vmdtext & Window (Sat Sep 03 2005 - 22:06:14 CDT)
- vmdtext and .cshrc. (Fri Sep 02 2005 - 21:09:25 CDT)
- plugin problem (Tue Aug 30 2005 - 01:17:45 CDT)
- Install VMD on Window XP (Thu Oct 28 2004 - 22:19:46 CDT)
- Install VMD on Window XP (Thu Oct 28 2004 - 22:17:59 CDT)
C L Freeman
- Re: vmd maxAtom (Thu Feb 07 2008 - 04:53:30 CST)
- vmd maxAtom (Wed Feb 06 2008 - 10:10:30 CST)
Caio Julio Martins Veloso
- RES: uNABLE TO OPEN VMD ON WINDOWS 2K (Thu Feb 01 2007 - 06:54:03 CST)
- uNABLE TO OPEN VMD ON WINDOWS 2K (Wed Jan 31 2007 - 21:38:03 CST)
Caio Veloso
- About Paratool (Tue Jan 26 2010 - 11:21:13 CST)
caldwell_at_heimdal.compchem.ucsf.edu
- Re: Amber prmtop/inpcrd files (Thu Jul 31 2003 - 14:22:12 CDT)
- Re: coloring waters (Fri Jun 20 2003 - 12:06:32 CDT)
- Re: coloring waters (Thu Jun 19 2003 - 18:25:04 CDT)
- coloring waters (Thu Jun 19 2003 - 12:51:05 CDT)
Cameron Mura
- resolved [Re: vmd / python / f10] (Sun May 17 2009 - 19:07:47 CDT)
- Re: vmd / python / f10 (Sat May 16 2009 - 22:00:29 CDT)
- vmd / python / f10 (Sat May 16 2009 - 18:43:18 CDT)
- FC4 stereo problems (Wed Jul 27 2005 - 18:03:58 CDT)
campen_at_geosc.psu.edu
- Reading Amber .crd files (Tue Jul 18 2006 - 12:25:17 CDT)
- Reading Amber .prd and PARM files into VMD (Tue Jul 18 2006 - 08:32:37 CDT)
candy deck
- Warning in the log file (Thu Jan 27 2011 - 09:28:12 CST)
- Adsorption and diffusion (Tue Dec 14 2010 - 03:38:53 CST)
- Problem Material Studio/VMD (Wed Aug 11 2010 - 01:49:55 CDT)
Carla Jamous
- ppmtompeg (Wed Sep 22 2010 - 07:52:42 CDT)
- Re: ppm files (Tue Sep 21 2010 - 09:50:05 CDT)
- ppm files (Mon Sep 20 2010 - 07:07:52 CDT)
- Re: ppm files (Mon Sep 20 2010 - 07:36:20 CDT)
- Problem with New cartoon representation (Mon Mar 01 2010 - 02:37:33 CST)
carles ferrer
- truncated octahedron box in namd (Tue Aug 26 2003 - 17:58:28 CDT)
Carlos Simmerling
- info for computational chemistry awards, please forward (Fri Feb 20 2009 - 10:22:27 CST)
- problem rendering traj file with tachyon (Tue Sep 13 2005 - 10:47:03 CDT)
- Re: VMD crash on athlon64 with licorice representation (Wed May 11 2005 - 10:34:22 CDT)
- VMD crash on athlon64 with licorice representation (Wed May 11 2005 - 08:13:25 CDT)
carlos_at_avalon.umaryland.edu
- Fixing the View in a Movie (Fri Oct 12 2007 - 11:44:45 CDT)
Carmen Valladares
- NAMD tutorial for Windows problem reading pgn file from vmd tkconsole (Fri Aug 21 2009 - 16:26:04 CDT)
- Mutator: Losing Chromophore (Wed Aug 19 2009 - 19:14:57 CDT)
- Save State Fails (Tue Jul 21 2009 - 18:57:00 CDT)
Carolyn Phillips
- Re: Problem with Movie Maker (Sat Oct 29 2011 - 11:38:10 CDT)
- Problem with Movie Maker (Fri Oct 28 2011 - 17:41:12 CDT)
- Re: Calculating RMSD on two sets of points (Tue May 10 2011 - 10:13:56 CDT)
- Calculating RMSD on two sets of points (Tue May 10 2011 - 09:57:25 CDT)
- Re: using VMD 1.8.7 on a Mac (Mon Aug 24 2009 - 18:24:36 CDT)
- Re: using VMD 1.8.7 on a Mac (Mon Aug 24 2009 - 11:33:04 CDT)
- using VMD 1.8.7 on a Mac (Sun Aug 23 2009 - 15:13:40 CDT)
- problem with gopython (Mon Mar 10 2008 - 22:32:05 CDT)
Carson Cope
- Delightsome Cart1er w4tches at Prest1ge Repl1cas (Fri Aug 31 2007 - 13:58:34 CDT)
Carsten Olbrich
- Porcupine update (Wed Feb 17 2010 - 03:03:27 CST)
- Re: namd-l: NAMD ibverbs not working on new cluster (Wed Jan 20 2010 - 06:49:43 CST)
- IDs of representations (Tue Dec 15 2009 - 03:30:54 CST)
- Re: porcupine plots for PC1 (Thu Dec 10 2009 - 04:43:03 CST)
- Holo-Bench with VMD and Flystick2 and/or Phantom (Tue Nov 17 2009 - 12:03:56 CST)
- Re: Download the newest version of VMD (Mon Jan 19 2009 - 05:05:08 CST)
- Re: How to generate an index (.ind) file? (Fri Dec 05 2008 - 01:30:17 CST)
- Re: SpaceNavigator (Tue Dec 04 2007 - 01:21:46 CST)
- Re: SpaceNavigator (Mon Dec 03 2007 - 07:46:02 CST)
- Re: SpaceNavigator (Fri Nov 30 2007 - 10:58:32 CST)
- Re: SpaceNavigator (Fri Nov 30 2007 - 10:16:46 CST)
- SpaceNavigator (Thu Nov 29 2007 - 11:23:01 CST)
Casey Johnson
- tcl procedure to set data (Sun Nov 06 2011 - 19:26:25 CST)
- Finding resname without using atomselect? (Tue Nov 01 2011 - 15:46:28 CDT)
- pdb naming convention to get ribbon representation (Wed Aug 31 2011 - 09:08:11 CDT)
- Represent custom peptide as ribbon? (Sat Aug 27 2011 - 09:24:07 CDT)
- Wrap PBC inside unit cellâ€ (Mon Aug 22 2011 - 17:54:41 CDT)
cashprofit3_at_address.com
- Real Cash, Real Profit....Believe it !!! (Tue Mar 21 2000 - 00:09:55 CST)
Caterina Bernini
- pKa and Temperature in MD (Tue Mar 31 2009 - 14:47:39 CDT)
caterinabernini_at_unisi.it
- eliminate atoms from psf and pdb files (Tue Jan 06 2009 - 11:40:15 CST)
Cathal Leahy
- Extract specific frames from trajectory (Thu Apr 01 2010 - 10:40:19 CDT)
Catherine Tweedie
- polymer molecule orientation parameter (Mon Sep 10 2007 - 13:45:11 CDT)
cbala_at_igib.res.in
- a suggestion and query on command usage (Fri Jul 01 2005 - 08:08:57 CDT)
- loading amber file (Tue May 31 2005 - 01:05:45 CDT)
Cesar Avila
- Periodic image and transformation matrix (Mon Jul 21 2008 - 19:20:06 CDT)
- Re: How to visualize phi maps calculated with delphi V. 4 (Sat Apr 21 2007 - 20:05:42 CDT)
- Re: Shutter glasses on VMD (Sun Nov 26 2006 - 16:28:10 CST)
- Shutter glasses on VMD (Sat Nov 25 2006 - 12:14:00 CST)
Cesar Delgado
- vmd-1.8.2, Spaceball and FC2 (Mon Jun 07 2004 - 13:54:36 CDT)
- Re: Using VMD with Chromium (Tue Mar 02 2004 - 19:26:22 CST)
- Re: VMD and Chromium (Thu Oct 30 2003 - 15:17:22 CST)
- Re: VMD and Chromium (Thu Oct 30 2003 - 13:37:15 CST)
- Re: VMD and Chromium (Thu Oct 30 2003 - 12:03:45 CST)
- VMD and Chromium (Wed Oct 22 2003 - 18:13:57 CDT)
- Tachyon VMD and MPI (Mon Dec 09 2002 - 18:25:19 CST)
- Re: Chromium (Mon Aug 05 2002 - 16:19:09 CDT)
- Re: Chromium (Thu Aug 01 2002 - 16:21:54 CDT)
- Re: Chromium (Thu Aug 01 2002 - 16:07:40 CDT)
- Chromium (Thu Aug 01 2002 - 15:16:31 CDT)
- More Linux woes (Fri Jul 26 2002 - 16:08:10 CDT)
- Linux compile error (Fri Jul 26 2002 - 15:47:34 CDT)
Cesar Luis Avila
- Re: Data fields in vmd (Thu Jan 15 2009 - 13:27:14 CST)
- Re: Data fields in vmd (Thu Jan 15 2009 - 12:33:09 CST)
- Data fields in vmd (Wed Jan 14 2009 - 15:02:25 CST)
- Calculating acyl chain order parameter profile on phospholipid vesicles (Thu Jan 08 2009 - 15:43:55 CST)
- Re: doubling a membrane (Tue Nov 11 2008 - 18:44:07 CST)
- Re: doubling a membrane (Tue Nov 11 2008 - 13:23:33 CST)
- Re: Problems with Newcartoon representation (Wed Aug 06 2008 - 14:28:00 CDT)
- Problems with Newcartoon representation (Wed Aug 06 2008 - 11:17:58 CDT)
- Extracting IR spectra from trajectories (Fri Oct 19 2007 - 10:08:45 CDT)
- Averaging volmaps (Thu Sep 06 2007 - 10:11:36 CDT)
- PMEpot + bigDCD ? (Wed Sep 05 2007 - 15:08:00 CDT)
- Re: How to load packages from tcllib into VMD (Mon Aug 20 2007 - 17:22:53 CDT)
- How to load packages from tcllib into VMD (Mon Aug 20 2007 - 14:59:49 CDT)
- Re: NAMD energy plugin (Wed Aug 15 2007 - 11:58:41 CDT)
- Re: NAMD energy plugin (Wed Aug 15 2007 - 11:15:17 CDT)
- NAMD energy plugin (Wed Aug 15 2007 - 08:22:59 CDT)
- Calculating volumetric data for a molecule (Tue Jul 24 2007 - 17:30:43 CDT)
- Setting modstyle volumeslice options via tk console (Wed Jul 18 2007 - 15:16:20 CDT)
- Rotate dx map (Thu Jun 21 2007 - 10:03:50 CDT)
- Re: PME plugin (Tue Jun 12 2007 - 11:22:26 CDT)
- PME plugin (Tue Jun 12 2007 - 11:18:47 CDT)
- Re: lipid Scd order parameter for a large bilayer (1440 lipids) with a changing bilayer normal (ie. bilayer undulations) (Wed Jun 06 2007 - 10:55:19 CDT)
- Re: list in TCL (Mon Jun 04 2007 - 20:07:33 CDT)
- Using regular expressions on tcl atomselection (Thu May 31 2007 - 17:45:32 CDT)
- Electron density profile (Thu May 31 2007 - 11:30:29 CDT)
- Re: lipid Scd order parameter for a large bilayer (1440 lipids) with a changing bilayer normal (ie. bilayer undulations) (Wed May 30 2007 - 20:36:09 CDT)
- Re: selecting complete residues within perticular distance. (Mon May 28 2007 - 14:04:32 CDT)
- Re: How to use remote GLSL rendering capabilities? (Sun May 27 2007 - 16:05:03 CDT)
- Re: selecting complete residues within perticular distance. (Sun May 27 2007 - 16:06:29 CDT)
- How to use remote GLSL rendering capabilities? (Thu May 24 2007 - 18:02:43 CDT)
- Adjusting perspective (Thu May 24 2007 - 11:33:40 CDT)
- How to visualize phi maps calculated with delphi V. 4 (Fri Apr 20 2007 - 18:36:48 CDT)
- Re: vmd can't start up after being installed in linux (Wed Apr 18 2007 - 13:23:21 CDT)
- Re: vmd can't start up after being installed in linux (Wed Apr 18 2007 - 10:54:40 CDT)
- Re: Strange characters using writemol2 (vmd 1.8.5) (Mon Apr 16 2007 - 20:06:58 CDT)
- Strange characters using writemol2 (vmd 1.8.5) (Mon Apr 16 2007 - 18:32:28 CDT)
- Re: Updating atomselection from frame to frame (Fri Mar 02 2007 - 08:59:48 CST)
- Re: Updating atomselection from frame to frame (Fri Mar 02 2007 - 07:32:01 CST)
- Re: superimposing two structures and getting the coordinates (Tue Feb 20 2007 - 14:52:36 CST)
- Re: superimposing two structures and getting the coordinates (Tue Feb 20 2007 - 12:43:52 CST)
- Measure atoms volume on VMD (Thu Feb 15 2007 - 15:27:53 CST)
- Re: Saving work in VMD--this seems ridiculously difficult! (Thu Feb 08 2007 - 20:53:30 CST)
- Re: Saving mutli-molecule structures in VMD (e.g., for building membranes) (Mon Feb 05 2007 - 09:11:38 CST)
- Re: Removing water in tcl (Thu Jan 04 2007 - 16:13:49 CST)
- Removing water in tcl (Thu Jan 04 2007 - 10:23:15 CST)
- Re: Writing pdb without chain identifier (Wed Dec 27 2006 - 12:54:25 CST)
- Re: Writing pdb without chain identifier (Tue Dec 26 2006 - 17:16:51 CST)
- Writing pdb without chain identifier (Tue Dec 26 2006 - 14:49:45 CST)
- Re: PME units (Tue Oct 03 2006 - 15:05:17 CDT)
- Re: namd-l: Re: Angles and dihedral generation (Tue Sep 05 2006 - 08:15:18 CDT)
- Re: namd-l: Re: Angles and dihedral generation (Mon Sep 04 2006 - 10:00:35 CDT)
- Angles and dihedral generation (Fri Sep 01 2006 - 20:02:36 CDT)
- Re: Where did I put those angles? (Thu Aug 31 2006 - 19:17:14 CDT)
- Where did I put those angles? (Thu Aug 31 2006 - 17:16:01 CDT)
Cesar Millan
- Re: VMD 1.9 beta 3 posted for download... (Tue Mar 08 2011 - 19:14:30 CST)
- Re: VMD 1.9 beta 3 posted for download... (Mon Mar 07 2011 - 17:43:46 CST)
- Re: VMD 1.9 beta 3 posted for download... (Mon Mar 07 2011 - 15:47:47 CST)
- Possible bug in vmd 1.8.7 alpha? (Sat Apr 18 2009 - 00:09:57 CDT)
- Potential map animation, help! (Tue Nov 20 2007 - 12:40:59 CST)
- Re: use animatepdbs.tcl to include APBS potential maps (Sun Jun 10 2007 - 22:09:27 CDT)
- use animatepdbs.tcl to include APBS potential maps (Sat Jun 09 2007 - 22:48:02 CDT)
- Re: save coordinates after moving them. (Wed Oct 04 2006 - 15:35:33 CDT)
- Re: save coordinates after moving them. (Tue Oct 03 2006 - 15:32:17 CDT)
- save coordinates after moving them. (Tue Oct 03 2006 - 14:02:41 CDT)
- How to build a pseudo pore? (Sat Sep 30 2006 - 11:36:15 CDT)
- proto-HEME parameters (Thu Apr 06 2006 - 17:05:56 CDT)
Cetin Baloglu
- Re: bad resolution and too slow on mandrake 10.0 (Wed May 25 2005 - 04:04:55 CDT)
- Hydration (Wed May 18 2005 - 03:44:34 CDT)
- radius of gyration (Tue May 10 2005 - 09:47:59 CDT)
cgji
- Vmd too slow on Suse10.x (Mon May 05 2008 - 08:20:47 CDT)
Ch. Fufezan
- Re: change default drawing and coloring method (Tue May 23 2006 - 09:26:52 CDT)
Chaitanya Krishna
- Message from Chaitanya Krishna (Fri Jan 27 2006 - 08:17:50 CST)
Chaitanya Krishna A
- Building a sphere of atoms around a chosen atom (Mon Jan 02 2006 - 08:01:49 CST)
- mpg image speed (Tue Apr 12 2005 - 09:06:44 CDT)
- Re: mpg image speed (Mon Apr 11 2005 - 14:19:11 CDT)
- Re: mpg image speed (Mon Apr 11 2005 - 12:02:09 CDT)
- mpg image speed (Sun Apr 10 2005 - 01:01:08 CDT)
- mpg image speed (Sun Apr 10 2005 - 00:04:34 CDT)
- mpg image speed (Thu Apr 07 2005 - 04:08:54 CDT)
Chanda.Jnanojjal_at_edam.uhp-nancy.fr
- replication of bilayer (Wed Dec 26 2007 - 04:08:00 CST)
Chandra Ramananjara
- Re: NAMDENERGY crashing repeatedly (Tue Aug 05 2008 - 18:49:40 CDT)
- NAMDENERGY crashing repeatedly (Tue Aug 05 2008 - 09:27:12 CDT)
- Inconsistencies in NAMD simulations (Tue Jan 22 2008 - 02:49:53 CST)
- namdenergy plugin (Sun Jul 09 2006 - 23:47:10 CDT)
- Re: error using Namdenergy (Wed Jun 21 2006 - 19:55:01 CDT)
- Re: error using Namdenergy (Wed Jun 21 2006 - 21:17:13 CDT)
- error using Namdenergy (Wed Jun 21 2006 - 15:04:19 CDT)
- NAMD support for MNDO semi-empirical model (Mon May 15 2006 - 10:34:07 CDT)
- Tcl scripting within NAMD configuration file (Fri Mar 24 2006 - 09:26:18 CST)
- TCL scripting within NAMD Configuration File (Thu Mar 23 2006 - 09:12:56 CST)
- Re: Problem with VMD 'animate' command (Mon Feb 13 2006 - 01:37:31 CST)
- Problem with VMD 'animate' command (Sun Feb 12 2006 - 10:12:36 CST)
chandran karunakaran
- Add H-atoms to Pdb file for NMR (Tue Apr 20 2004 - 11:22:32 CDT)
- Metal-Metal distance (Tue Apr 08 2003 - 17:26:13 CDT)
- Solvate 1.1.1 (Tue Mar 25 2003 - 13:05:23 CST)
- Distance, angle (Sat Mar 22 2003 - 15:09:10 CST)
- (no subject) (Thu Mar 20 2003 - 13:56:44 CST)
- (no subject) (Thu Mar 20 2003 - 13:55:13 CST)
Chang Hu
- NAMD from command line args (Sat May 06 2006 - 21:09:53 CDT)
- Re: Re: Refreshing the screen (Thu May 04 2006 - 14:12:16 CDT)
- Re: Re: Refreshing the screen (Thu May 04 2006 - 13:24:47 CDT)
- Refreshing the screen (Thu May 04 2006 - 11:58:12 CDT)
- Re: Building VMD in Windows (Sun Apr 30 2006 - 22:42:34 CDT)
- Re: Building VMD in Windows (Sun Apr 30 2006 - 01:07:52 CDT)
- Re: Problems with mouse programming in VMD (Sun Apr 30 2006 - 01:03:07 CDT)
- Building VMD in Windows (Sat Apr 29 2006 - 22:12:23 CDT)
- Re: Problems with mouse programming in VMD (Sat Apr 29 2006 - 21:05:37 CDT)
- Re: Problems with mouse programming in VMD (Thu Apr 27 2006 - 12:36:23 CDT)
- Problems with mouse programming in VMD (Wed Apr 26 2006 - 23:19:57 CDT)
Chang, Christopher
- Re: namd-l: solvate a molecule (Tue Sep 23 2008 - 11:57:58 CDT)
- Re: solvate a molecule (Tue Sep 23 2008 - 11:47:37 CDT)
- Measure hbonds equivalent in Python interface? (Wed Sep 10 2008 - 18:52:43 CDT)
- Re: Py_atomsel.C: invalid conversion (Tue Sep 02 2008 - 13:59:12 CDT)
- Py_atomsel.C: invalid conversion (Fri Aug 29 2008 - 13:01:04 CDT)
- RE: VMD 1.8.5 startup (Thu Nov 09 2006 - 14:20:16 CST)
- VMD 1.8.5 startup (Wed Nov 08 2006 - 14:56:37 CST)
- RE: Atomselection for negative values (Wed Jul 19 2006 - 17:46:15 CDT)
- Atomselection for negative values (Wed Jul 19 2006 - 16:18:39 CDT)
- RE: Appending to DCD file with "animate write" (Wed Nov 16 2005 - 17:05:41 CST)
- RE: Appending to DCD file with "animate write" (Wed Nov 16 2005 - 13:42:36 CST)
- Appending to DCD file with "animate write" (Wed Nov 16 2005 - 13:11:30 CST)
- RE: problem with writepdb (Mon Oct 24 2005 - 11:15:22 CDT)
- RE: Loading multiple molecules in one step / "Apply changes automatically" (Fri Oct 21 2005 - 11:15:40 CDT)
- RE: Warning: add bond failed in patch ACE (Thu Oct 20 2005 - 11:41:43 CDT)
- RE: dots per inch? (Wed Oct 19 2005 - 15:26:46 CDT)
- RE: puzzling writepdb error (Wed Oct 12 2005 - 17:58:33 CDT)
- RE: VMD removing slightly misplaced atoms (Tue Oct 04 2005 - 20:05:48 CDT)
- RE: visualizing an atomselect (Wed Sep 28 2005 - 18:38:29 CDT)
- RE: tcl command to save structure to file? (Wed Sep 28 2005 - 18:30:16 CDT)
- COR format and first residue (Tue Sep 27 2005 - 18:31:32 CDT)
- RE: Left Right eye stereo flip in Crystal Eyes (Wed Sep 14 2005 - 15:18:37 CDT)
- RE: DCD file format (Wed Sep 14 2005 - 14:27:47 CDT)
- RE: problem rendering traj file with tachyon (Tue Sep 13 2005 - 16:19:22 CDT)
- RE: dcd tools (Tue Sep 13 2005 - 10:20:35 CDT)
- RE: Read support for CHARMM binary coordinate file? (Thu Aug 25 2005 - 17:59:55 CDT)
- Read support for CHARMM binary coordinate file? (Tue Aug 23 2005 - 17:28:31 CDT)
- RE: help with BIOMT (Fri Aug 12 2005 - 14:57:51 CDT)
- RE: vmd with no x (Thu Aug 11 2005 - 18:00:33 CDT)
- RE: Atom renumbering in DCD file (Tue Aug 09 2005 - 14:15:03 CDT)
- Atom renumbering in DCD file (Mon Aug 08 2005 - 18:48:33 CDT)
- Changing atom order in DCD structures? (Mon Jul 25 2005 - 15:42:45 CDT)
- RE: Representing disulfide bonds when using psfgen (Thu Jul 21 2005 - 12:39:06 CDT)
- RE: (Mon Jul 18 2005 - 16:32:09 CDT)
- TCL for adding bonds? (Thu Jul 07 2005 - 11:30:21 CDT)
- RE: psfgen and DNA (Thu Jul 07 2005 - 10:54:42 CDT)
- Strange VMD output (Fri Jun 17 2005 - 15:02:57 CDT)
- RE: Combine Drawing Methods - Cartoon and Disulfide Bonds (Tue Jun 14 2005 - 18:43:48 CDT)
- RE: Problems with Psf using Charmm format, solvate and autoionize (Wed Jun 08 2005 - 15:12:41 CDT)
- RE: creating scripts (Fri Jun 03 2005 - 17:50:51 CDT)
- Total charge query? (Fri May 13 2005 - 13:32:20 CDT)
- RE: representation_problem (Wed Apr 20 2005 - 16:34:14 CDT)
- RE: mpg image speed (Mon Apr 11 2005 - 11:20:24 CDT)
- RE: How to remove "Lable" (Thu Apr 07 2005 - 17:39:55 CDT)
- RE: Display only side chains (Mon Mar 07 2005 - 17:40:24 CST)
- RE: vmdmovie plugin (Fri Feb 18 2005 - 15:21:59 CST)
- RE: window size (Thu Feb 10 2005 - 17:07:31 CST)
- RE: installation of VIDEOMACH, how to point to the location of the files (Fri Feb 04 2005 - 13:49:17 CST)
- Selected angles during build? (Thu Feb 03 2005 - 15:38:04 CST)
- Possible values for "select_method"? (Mon Jan 10 2005 - 16:48:27 CST)
Changbong Hyeon
- Text-line command for Graphics? (Fri Apr 25 2003 - 16:00:40 CDT)
- DCD file format? (Fri Apr 25 2003 - 15:50:23 CDT)
charbott_at_gmail.com
- Re: RE: trouble with measure hbonds (Tue Oct 05 2010 - 10:35:14 CDT)
Chari, Ravi
- APBS dx colors depend on order of molec files loaded??? (Thu Oct 18 2007 - 14:52:48 CDT)
Charles Cleveland
- Re: Problem with periodic condition (Sat Apr 28 2007 - 16:02:55 CDT)
- 1.8.6 install for Windows OpenGL (Microsoft Windows 2000/XP/Vista (32-bit) using OpenGL) (Sun Apr 08 2007 - 08:05:00 CDT)
Charles Danko
- Re: namd-l: How to make a disulphide bond (Tue May 16 2006 - 13:47:37 CDT)
Charles McCallum
- Re: drawing of direction vectors for conformational transition (Thu Sep 14 2006 - 10:42:06 CDT)
- Re: psfgen problems? (Tue Aug 22 2006 - 12:41:51 CDT)
- Re: reading cmap wih vmd (Fri Aug 18 2006 - 10:23:57 CDT)
- Re: water box... (Sat Jun 24 2006 - 18:24:16 CDT)
- Re: removing waters (gramicidin example) (Thu Oct 27 2005 - 15:26:01 CDT)
- Re: removing waters (gramicidin example) (Thu Oct 27 2005 - 15:46:22 CDT)
- removing waters (gramicidin example) (Thu Oct 27 2005 - 12:57:46 CDT)
- Re: trouble with autopsf (Tue Oct 25 2005 - 08:19:38 CDT)
- Re: RMSD of dihedrals (Fri Sep 30 2005 - 09:14:55 CDT)
- RMSD of dihedrals (Thu Sep 29 2005 - 15:58:07 CDT)
- Re: Ramachandran plot (Tue May 10 2005 - 22:56:14 CDT)
- Re: VMD does not start on Mac OS 10.3.8 (Fri Mar 18 2005 - 17:07:22 CST)
- Re: (Wed Nov 17 2004 - 22:21:11 CST)
- Re: psfgen and xplor topology (Tue Oct 26 2004 - 11:36:37 CDT)
- Re: psfgen and xplor topology (Tue Oct 26 2004 - 09:50:08 CDT)
- Re: psfgen and xplor topology (Mon Oct 25 2004 - 22:33:48 CDT)
- Re: VMD 1.8.1 MacOSX running very slow on new G4 1 GHz Powerbook (Thu Oct 23 2003 - 13:12:39 CDT)
- mousing problem under OS X (Fri Oct 17 2003 - 23:25:46 CDT)
- re-centering view/rotation axes (Mon Aug 11 2003 - 17:03:37 CDT)
- configuring vmd w/ browser on OS X (Fri Aug 08 2003 - 21:49:16 CDT)
- Re: movie making (Tue Aug 05 2003 - 16:05:53 CDT)
- Re: solute + solvent temperature? (Fri May 16 2003 - 01:04:12 CDT)
- vmdmovie on OS X current (Fri May 09 2003 - 02:22:23 CDT)
Charles Moad
- applying 6dof input forces (Tue Jul 05 2005 - 16:13:02 CDT)
- creating psf with trimethoprim (Wed May 11 2005 - 21:38:14 CDT)
- IMDEnergies from python (Mon May 09 2005 - 22:51:43 CDT)
- Re: Converting graphics to a pdb's coord system (Thu Apr 14 2005 - 20:08:24 CDT)
- Re: Converting graphics to a pdb's coord system (Wed Apr 13 2005 - 18:40:54 CDT)
- Converting graphics to a pdb's coord system (Tue Apr 12 2005 - 08:52:12 CDT)
- Re: mpg image speed (Mon Apr 11 2005 - 14:23:08 CDT)
- Converting graphics to a pdb's coord system (Sun Apr 10 2005 - 19:13:31 CDT)
Charles Schwieters
- Re: No Display when running vmd 1.3 (Thu May 27 1999 - 16:03:58 CDT)
- translations with fixed and unfixed molecules (Mon Apr 12 1999 - 16:27:28 CDT)
- moving molecules and getting the new positions (Tue Mar 30 1999 - 15:57:19 CST)
charles sun
- multiseq doesn't respond to ctrl key correctly (Thu Feb 09 2012 - 22:58:45 CST)
Charles Zhao
- Solvate plug-in (Tue Aug 10 2010 - 21:53:22 CDT)
Charles.Schwieters_at_nih.gov
- Re: Molecule rotation (Thu Mar 08 2001 - 12:54:04 CST)
Charles_at_Schwieters.org
- Re: vmd-xplor installation (Thu Dec 14 2006 - 18:56:28 CST)
- Re: understanding NOE restraints (Tue May 03 2005 - 05:52:56 CDT)
- Re: Calling Python hackers.... (Tue Feb 08 2005 - 11:11:21 CST)
- Re: core when using some features of vmd-xplor (Thu May 06 2004 - 16:03:01 CDT)
- Re: few colors in new ribbons representation - raytrace output (Thu Jan 29 2004 - 21:31:23 CST)
- few colors in new ribbons representation - raytrace output (Thu Jan 29 2004 - 17:40:15 CST)
- stereo postscript rendering (Tue Jun 20 2000 - 08:04:27 CDT)
- script for generating stereo postscript images (Fri Feb 11 2000 - 14:53:32 CST)
Charlotte J Siska
- trouble saving the state of two proteins (Fri Jun 29 2007 - 12:45:27 CDT)
Charlotte Siska
- trouble with measure hbonds (Mon Oct 04 2010 - 15:01:36 CDT)
Chathurika Abeyrathne
- Re: Re: namd-l: MMTools (Wed Aug 17 2011 - 21:07:21 CDT)
- Re: Re: namd-l: MMTools (Wed Aug 17 2011 - 19:02:46 CDT)
- MMTools (Tue Aug 16 2011 - 20:03:45 CDT)
- Re: Total Dipole Moment (Tue Jun 28 2011 - 20:17:04 CDT)
- Re: Total Dipole Moment (Tue Jun 28 2011 - 20:08:17 CDT)
- Re: Total Dipole Moment (Tue Jun 28 2011 - 19:56:41 CDT)
- Total Dipole Moment (Tue Jun 28 2011 - 04:48:54 CDT)
- Water Models (Sat Apr 02 2011 - 02:43:29 CDT)
CHAUMONT Alain
- Changing the rotation and centering matrix of a molecule (Wed Oct 13 2004 - 10:39:48 CDT)
- Centering of the view on one atom (Wed Mar 31 2004 - 09:42:09 CST)
- Spatial Distributionb Functions (Thu Feb 05 2004 - 03:01:46 CST)
Chen Chen
- Re: use configure.options (Mon Nov 17 2008 - 21:37:24 CST)
- Re: use configure.options (Mon Nov 17 2008 - 20:53:14 CST)
- use configure.options (Mon Nov 17 2008 - 19:34:24 CST)
Chen Fei
- Compute force between two atoms (Tue Feb 26 2008 - 20:28:22 CST)
Chen Yongzhi
- How to save trajectory using Tcl commands? (Wed Apr 14 2004 - 19:28:11 CDT)
Chen, Bo (NIH/NIDDK) [F]
- Can anyone help me get the coordinate of the cylinders in the cartoon representation? (Fri Feb 26 2010 - 11:11:42 CST)
Chen, Zhihong (chenz2)
- problem about dowser (Fri Sep 03 2010 - 16:38:05 CDT)
Chenchen Wang
- Re: topotools (Wed Apr 28 2010 - 15:15:38 CDT)
- topotools (Wed Apr 28 2010 - 00:19:21 CDT)
ChenFei
- ´ð¸´: classify and compute the forces between two atoms (Tue Feb 26 2008 - 01:10:29 CST)
- classify and compute the forces between two atoms (Mon Feb 25 2008 - 06:38:58 CST)
- How can I get .xyzr file or .xyzrn file? (Wed Sep 26 2007 - 02:27:51 CDT)
Cheng Luo, Ph.D.
- question about "then: then/endif not found" in the start VMD. (Fri Dec 16 2005 - 11:52:18 CST)
Cheng, Kelvin
- Error in running VMD on AMD64-bit machine (Fedora Core 4) (Mon Dec 19 2005 - 16:36:55 CST)
chenmengen
- NOC 3.0 is released (Wed May 16 2007 - 14:01:37 CDT)
- NOC (current version 1.5.2.10) a new, free program for protein structure model-building, visualization, validation and analysis (Tue Mar 29 2005 - 19:07:52 CST)
Cheol Soon Lee
- Segmentation error! (Wed Apr 09 1997 - 05:47:56 CDT)
- Segmentation error! (Wed Apr 09 1997 - 05:46:34 CDT)
cheol_at_rccd.snu.ac.kr
- Error in Linux (Wed Apr 09 1997 - 05:51:13 CDT)
Cheri M Turman
- Re: error while loading shared libraries: libGLU.so.1 (Tue Oct 26 2004 - 15:12:07 CDT)
- Re: error while loading shared libraries: libGLU.so.1 (Tue Oct 26 2004 - 13:37:56 CDT)
- Re: error while loading shared libraries: libGLU.so.1 (Tue Oct 26 2004 - 12:21:29 CDT)
- Re: error while loading shared libraries: libGLU.so.1 (Thu Oct 21 2004 - 14:27:46 CDT)
- error while loading shared libraries: libGLU.so.1 (Thu Oct 21 2004 - 13:24:12 CDT)
- Re: startup failure (Mon Apr 05 2004 - 12:47:54 CDT)
- startup failure (Fri Apr 02 2004 - 15:29:00 CST)
- startup errors and variations of installation (Thu Apr 01 2004 - 14:43:58 CST)
- startup failure (Thu Apr 01 2004 - 14:24:14 CST)
Chetan Mahajan
- RE: Re: [lammps-users] LAMMPS to VMD: lmp2vmd tool (Wed Jun 10 2009 - 10:00:30 CDT)
- RE: Re: [lammps-users] LAMMPS to VMD: lmp2vmd tool (Tue Jun 09 2009 - 13:08:16 CDT)
chiloo777 777
- problem about running (Sat Apr 17 2010 - 01:54:41 CDT)
Chirag Vora
- how to center protein? (Tue Apr 24 2012 - 00:04:09 CDT)
- Radial distribution function in VMD (Tue Nov 22 2011 - 12:01:52 CST)
- How to read pdbqt file? (Sat Sep 03 2011 - 14:57:01 CDT)
- Re: DNA hairpin (Sun Aug 21 2011 - 11:49:44 CDT)
ChoiHeeSung
- vmd bug in ubuntu 9.10 (Wed Nov 11 2009 - 10:53:04 CST)
Chris Berthiaume
- Re: segfault using VMD 1.8.6 32-bit Linux and chromium 1.9 (Tue Aug 26 2008 - 12:23:11 CDT)
- segfault using VMD 1.8.6 32-bit Linux and chromium 1.9 (Mon Aug 25 2008 - 20:50:12 CDT)
Chris Harrison
- Re: Problem with generating psf using CGENFF (Thu Apr 26 2012 - 11:55:08 CDT)
- Re: Problem with generating psf using CGENFF (Thu Apr 26 2012 - 06:23:08 CDT)
- Re: openGL x,y position (Sun Apr 22 2012 - 23:00:26 CDT)
- Re: how to place a membrane protein with OPM ? (Thu Mar 01 2012 - 00:13:58 CST)
- Re: how to place a membrane protein with OPM ? (Wed Feb 29 2012 - 21:35:28 CST)
- Re: how to place a membrane protein with OPM ? (Wed Feb 29 2012 - 21:36:32 CST)
- Re: PSFGEN and Reading Bonds from PDB Files (Sun Feb 05 2012 - 15:45:19 CST)
- Re: select whole residues (Tue Jan 03 2012 - 18:37:13 CST)
- Re: to use tcl script in command line (Thu Dec 08 2011 - 08:30:37 CST)
- Re: Reading the SMD information form the log file (Fri Dec 02 2011 - 11:37:38 CST)
- Re: Maximum length of an extended peptide? (Tue Nov 15 2011 - 20:07:24 CST)
- Re: namd-l: selection of cholesterol molecules (Wed Nov 02 2011 - 00:06:35 CDT)
- Re: selection (Mon Oct 31 2011 - 17:03:55 CDT)
- Re: selection (Mon Oct 31 2011 - 15:13:57 CDT)
- Re: move ligand around the protin (Mon Oct 31 2011 - 11:54:43 CDT)
- Re: Run a variable through VMD Tk/Tcl console .vmdrc file (Sun Oct 30 2011 - 10:28:37 CDT)
- Re: Problems with APBS calculations (Thu May 19 2011 - 21:37:36 CDT)
Chris Knorowski
- Re: loading a trajectory where particles aren't conservd (Wed Aug 31 2011 - 15:35:04 CDT)
- loading a trajectory where particles aren't conservd (Mon Aug 29 2011 - 16:35:28 CDT)
Chris Upton
- Re: [Tech] Colors in VMD (Fri Jan 24 1997 - 11:55:13 CST)
- JMV (Wed Mar 31 2004 - 13:30:08 CST)
- MacOSX bundle (Sat Jul 06 2002 - 00:16:13 CDT)
- Mac OSX version (Tue Jun 25 2002 - 12:18:47 CDT)
chris.harwell_at_pharma.novartis.com
- VMD on Linux RH9 with ATI's fglrx-4.3.0-3.14.6 1280x1024@100Hz dumping core ... any helpful advice :>? (Fri Dec 17 2004 - 15:27:21 CST)
- any body else have VMD problems with Linux + ATI FireGL X1-256p + fglrx-glc22-4.3.0-3.7.0 (Wed Feb 11 2004 - 16:16:46 CST)
chris.neale_at_utoronto.ca
- surf fails with TIP4P water in VMD 1.9b1 (Mon Feb 28 2011 - 10:52:08 CST)
Christer Svanberg
- VMD using CygWin? (Tue Dec 19 2006 - 07:29:15 CST)
Christian Courtney
- Replica watch is a perfect gift (Sun Apr 27 2008 - 04:18:34 CDT)
Christian Fufezan
- Re: Starting VMD at Command Line in OSX (Sat Oct 28 2006 - 13:38:10 CDT)
- pass variables from the shell to VMD (Thu Sep 07 2006 - 10:54:05 CDT)
- change default drawing and coloring method (Mon May 22 2006 - 19:08:17 CDT)
Christian Jorgensen
- vmd: Saving output (Mon Nov 01 2010 - 04:30:03 CDT)
- vmd: Tcl script help (Fri Oct 29 2010 - 14:06:59 CDT)
Christian Mücksch
- Problem with VMD 1.9.1 (CUDA) on Snow Leopard (Mon Feb 13 2012 - 05:02:54 CST)
Christian Simon
- Re: Problem with Hg, H (Wed May 10 2006 - 07:40:49 CDT)
- Re: Difficulties using Crystal Eyes 3 (Mon Dec 06 2004 - 10:20:59 CST)
- Difficulties using Crystal Eyes 3 (Thu Dec 02 2004 - 09:00:05 CST)
- "Pick item mode" inactive in OSX bundle ? (Thu Oct 03 2002 - 07:44:53 CDT)
- Re: VMD 1.8 alpha 16, publically available ... (Mon Jun 24 2002 - 13:43:23 CDT)
- No 'Primary File Type' in Load menu (v1.8a10 on MacOSX) (Thu Jun 20 2002 - 08:01:20 CDT)
- Re: Re: Mac Titanium video card (Mon Jun 10 2002 - 07:45:42 CDT)
- Mac Titanium video card (Wed Jun 05 2002 - 17:06:20 CDT)
- Re: Help on script (Mon Mar 25 2002 - 08:06:27 CST)
Christian Wohlschlager
- Re: Fwd: VMD Stereo does not work Quadbufferd (Fri May 11 2012 - 03:45:12 CDT)
- Fwd: VMD Stereo does not work Quadbufferd (Mon May 07 2012 - 02:46:23 CDT)
- VMD Stereo not work (Thu Apr 26 2012 - 08:32:48 CDT)
- Re: Problem vmd 1.9 plus Cave (Fri Oct 28 2011 - 04:23:30 CDT)
- Problem vmd 1.9 plus Cave (Thu Oct 27 2011 - 01:12:09 CDT)
- Re: VMD meets Andy Warhol/Campbell's Soup on display wall (Thu Sep 29 2011 - 01:18:13 CDT)
- Cionize (Thu Sep 15 2011 - 01:12:16 CDT)
- cionize (Fri Sep 09 2011 - 02:10:28 CDT)
- Salt brigde (Thu Jul 07 2011 - 01:06:51 CDT)
- Simple Question regarding psf generation (Tue Apr 19 2011 - 08:09:15 CDT)
- Seminars Trainings (Wed Nov 24 2010 - 02:37:48 CST)
- Novint Falcon (Tue Oct 19 2010 - 07:22:21 CDT)
- wheris sculptor.tcl (Fri Sep 24 2010 - 05:39:50 CDT)
- Use of parmtool plugin (Mon Sep 13 2010 - 01:38:01 CDT)
- VMD plus Phantom (Wed Aug 18 2010 - 11:04:42 CDT)
- vmd on Microsoft 2000 and Phantom (Tue Jun 22 2010 - 07:51:03 CDT)
- Error vmd and Nvidia Graphik Card (Tue Mar 09 2010 - 10:19:47 CST)
- Changing Nvidia driver (Tue Nov 17 2009 - 02:46:23 CST)
- Question about Keyboaerd events send from other PC (Thu Nov 05 2009 - 02:29:36 CST)
- Antw: Re: Cuda an a cluster ? (Fri Oct 23 2009 - 00:20:59 CDT)
- Cuda an a cluster ? (Thu Oct 22 2009 - 02:56:18 CDT)
- VMD Tracking VRPN (Wed Aug 19 2009 - 02:01:49 CDT)
- Antw: Re: CUDA Support (Tue Aug 18 2009 - 01:06:27 CDT)
- CUDA Support (Wed Aug 12 2009 - 03:09:35 CDT)
- NEW New (Thu Aug 06 2009 - 07:44:37 CDT)
- vmd Linux 64 (Fri Jul 31 2009 - 03:29:04 CDT)
- Re: Antw: Re: CAVE & Vmd (Fri Jul 27 2007 - 01:45:45 CDT)
- Antw: Re: CAVE & Vmd (Wed Jul 25 2007 - 08:21:27 CDT)
- CAVE & Vmd (Fri Jul 06 2007 - 02:06:54 CDT)
- Cave and usr keys defined in tcl (Tue Feb 27 2007 - 05:46:38 CST)
- Large Molecule in CAVE Enviroment (Thu Jan 18 2007 - 01:35:06 CST)
- Unaligned access to ... (Mon Jan 08 2007 - 02:57:56 CST)
- CAVE Sensor Question (Mon Dec 18 2006 - 01:28:53 CST)
- Thank you for you answere the folowing is the .vmdsensor file (Tue Dec 12 2006 - 06:06:52 CST)
- CAVE Question (Mon Dec 11 2006 - 00:28:12 CST)
- Re: Antw: Re: CAve Question (Thu Nov 30 2006 - 08:22:46 CST)
- Help for the CAVE (Wed Nov 29 2006 - 08:19:11 CST)
- Antw: Re: CAve Question (Tue Nov 28 2006 - 08:16:48 CST)
- CAve Question (Mon Nov 27 2006 - 02:39:04 CST)
Christina Payne
- solvate numbering problems (Wed Apr 06 2005 - 11:05:39 CDT)
Christine Horejs
- display surface amino acid beads (Sat Jan 09 2010 - 04:22:34 CST)
- xzy format and ResType (Tue Nov 17 2009 - 14:03:01 CST)
- RBCG bead diameter (Wed Oct 28 2009 - 11:54:50 CDT)
- Re: lammpstrj file as pdb (Tue Oct 27 2009 - 12:18:15 CDT)
- lammpstrj file as pdb (Tue Oct 27 2009 - 11:50:06 CDT)
- colour residues (Mon Oct 12 2009 - 17:58:31 CDT)
- format of pdb file (Mon Oct 12 2009 - 09:04:51 CDT)
Christoph Hagedorn
- Q: MO visualisation (Thu Dec 14 2000 - 11:35:39 CST)
Christoph Schneider
- calculation of RMS values (Wed Aug 19 1998 - 04:05:51 CDT)
- measuring torsion angles (Mon Jun 29 1998 - 03:08:48 CDT)
- H-bonds (Mon Oct 06 1997 - 12:02:13 CDT)
- rock around the clock? (Mon Oct 06 1997 - 11:02:46 CDT)
Christoph Weber
- Re: VMD on MacOSX 10.6 Snow Leopard: fast (Tue Sep 01 2009 - 13:30:07 CDT)
- VMD on MacOSX 10.6 Snow Leopard: fast (Mon Aug 31 2009 - 18:31:11 CDT)
- NVidia GeForce 3D Vision (Tue May 19 2009 - 12:38:08 CDT)
- Improved VMD performance on MacOSX 10.5.2 (Tue Feb 12 2008 - 16:51:14 CST)
- Re: VMD 1.8.6, XTC format on Mac OS X 10.5.1 (Sat Jan 26 2008 - 16:59:17 CST)
- Re: no transparency on newest iMacs (Thu Oct 04 2007 - 15:56:56 CDT)
- no transparency on newest iMacs (Wed Oct 03 2007 - 19:05:21 CDT)
- VMD performance on Vista (Thu Feb 01 2007 - 16:23:58 CST)
- Re: VMD email support next two weeks (Mon Dec 18 2006 - 18:10:13 CST)
- Re: RE: vmd-l digest V1 #579 (Thu Jul 20 2006 - 17:19:08 CDT)
- Re: Anyone using ATI X1600? (Mon Jul 17 2006 - 16:18:00 CDT)
- revised VMD tutorial (Fri Jul 14 2006 - 19:03:44 CDT)
- Re: Anyone using ATI X1600? (Fri Jul 14 2006 - 18:35:35 CDT)
- Re: MacBookPro and VMD version (Wed Apr 05 2006 - 14:10:08 CDT)
Christoph Willing
- Possible MPI code problem (and fix) (Thu Mar 29 2012 - 07:30:12 CDT)
- Can't set graphics window position to 0,0 (Tue Mar 27 2012 - 18:17:10 CDT)
Christophe Guilbert
- avoiding distance based bond search when reading a PDB file (Thu Nov 14 2002 - 14:31:17 CST)
christopher
- morph (Wed Feb 28 2007 - 16:18:48 CST)
- Re: VMD open GL Display problem (Tue Feb 27 2007 - 10:52:51 CST)
- GL window offset problem (Mon Feb 12 2007 - 15:09:55 CST)
- cartoon problems (encore) (Sat Feb 03 2007 - 15:29:56 CST)
- Re: [vmd] K3b bug? (Sat Jan 27 2007 - 09:15:58 CST)
- [vmd] K3b bug? (Sat Jan 27 2007 - 07:12:57 CST)
- Install and Configure Problems (Wed Jan 03 2007 - 08:57:14 CST)
- coloring residues with VMD (Wed Nov 29 2006 - 14:41:37 CST)
Christopher D. Wassman
- Re: Problems loading shared object, vmd1.8 linux mesa binaries (Tue Feb 25 2003 - 01:49:09 CST)
- Problems loading shared object, vmd1.8 linux mesa binaries (Sun Feb 23 2003 - 21:59:24 CST)
Christopher Gillespie
- Re: Understanding topology files? (Thu Jan 15 2009 - 10:27:52 CST)
- Re: Understanding topology files? (Thu Jan 15 2009 - 09:25:23 CST)
- Re: Catdcd? (Thu Oct 16 2008 - 12:25:42 CDT)
- Re: Selecting atoms that have real SASA greater than 0, Not using "Surface" (Tue Jul 29 2008 - 18:39:14 CDT)
- Re: water box...density!!! (Mon Jul 28 2008 - 09:43:47 CDT)
- Re: solvation and box size (Mon Jul 28 2008 - 07:33:37 CDT)
- Selecting atoms that have real SASA greater than 0, Not using "Surface" (Sun Jul 20 2008 - 16:28:04 CDT)
- Re: trajectory to xyz file. (Mon Jul 07 2008 - 14:44:12 CDT)
- Measure gofr with large DCD files (Possibly use bigdcd ???) (Fri May 23 2008 - 18:43:22 CDT)
Christopher Hartshorn
- Script problem (Thu Mar 12 2009 - 03:40:50 CDT)
- Membrane builder ?'s (Mon Feb 23 2009 - 13:09:16 CST)
- Average position of atom set (Tue Nov 04 2008 - 09:59:56 CST)
- Catdcd? (Thu Oct 16 2008 - 11:37:15 CDT)
- Solid Support Problem (Thu Sep 18 2008 - 13:33:07 CDT)
Christopher MacDermaid
- Re: superimposing proteins with non-similar coordinates (Wed Aug 26 2009 - 17:17:34 CDT)
Christopher McLean
- RE: Blank thumbnails and non-working snapshots (Thu Feb 11 2010 - 03:18:29 CST)
- RE: Blank thumbnails and non-working snapshots (Tue Feb 09 2010 - 09:04:06 CST)
- RE: Blank thumbnails and non-working snapshots (Tue Feb 09 2010 - 03:47:41 CST)
- Blank thumbnails and non-working snapshots (Mon Feb 08 2010 - 09:55:13 CST)
Christopher Neale
- %-sign shortcut for mouse->force->atom not working (Sun May 06 2012 - 12:21:38 CDT)
- how to use the AutoIMD "Tool control" panel. (Mon Apr 30 2012 - 11:28:19 CDT)
Christopher Share
- Running VMD on Mac OS X (Mon Dec 01 2008 - 23:23:08 CST)
Christopher Stiles
- RE: different numbers of frames even though... (Fri Mar 14 2008 - 10:59:50 CDT)
- different numbers of frames even though... (Fri Mar 14 2008 - 01:49:53 CDT)
- radial density over one frame (Sun Mar 09 2008 - 14:55:51 CDT)
- RE: OpenGL Display (Wed Nov 14 2007 - 07:14:17 CST)
- OpenGL Display (Tue Nov 13 2007 - 23:33:32 CST)
- radial density (Thu Aug 09 2007 - 09:11:55 CDT)
- RE: CNT Analysis (Tue Aug 07 2007 - 10:12:13 CDT)
- CNT Analysis (Tue Aug 07 2007 - 08:41:31 CDT)
Chuck
- Problem: I got a runtime error "CthCreate failed to create fiber!". (Sun Jul 12 2009 - 03:49:44 CDT)
- FATAL ERROR: ABNORMAL EOF FOUND - buffer=*0 0* (Mon Feb 23 2009 - 15:52:05 CST)
chucruz_at_ks.uiuc.edu
- full version OEM soft (Thu Oct 29 2009 - 23:14:25 CDT)
- Downloadable version (Thu Oct 29 2009 - 02:51:04 CDT)
Chung, Dong Hoon
- Where should I put script file? (Fri Nov 12 2004 - 14:02:09 CST)
Chunhu Tan
- How to build a crystal structure from a pdb file ? (Tue Sep 20 2005 - 19:43:41 CDT)
- May I use my own radii? (Thu Mar 17 2005 - 16:17:49 CST)
Cihan Aydin
- vmdnumpy for IED... (Sun Jun 14 2009 - 17:42:36 CDT)
cipitaua_at_gmail.com
- Re: bug in the g(r) evaluation? (Wed Apr 23 2008 - 07:50:12 CDT)
- Re: bug in the g(r) evaluation? (Tue Apr 22 2008 - 11:06:14 CDT)
- bug in the g(r) evaluation? (Tue Apr 22 2008 - 09:30:37 CDT)
Claire Zerafa
- RENDER ISSUES (Thu Jun 07 2007 - 08:48:17 CDT)
- rendering problems (Thu Jun 07 2007 - 09:37:13 CDT)
- Fw: visualising bonds in vmd (Wed Sep 07 2005 - 16:02:25 CDT)
- visualising bonds in vmd (Wed Sep 07 2005 - 08:00:31 CDT)
- visualising protein dynamics (Wed Jun 22 2005 - 12:39:55 CDT)
- vmd load molecule problem (Fri Jun 17 2005 - 06:30:29 CDT)
- RUNNING VMD (Thu Mar 03 2005 - 12:42:35 CST)
Claw Isthelaw
- How to embed 3-D image into powerpoint (Mon Aug 04 2008 - 15:15:33 CDT)
- RE: Create atom selection from list of integers (Mon Jun 02 2008 - 13:10:12 CDT)
- Re: Selecting the N-closest Waters (Mon Jun 02 2008 - 13:25:51 CDT)
- Create atom selection from list of integers (Mon Jun 02 2008 - 11:01:49 CDT)
- RE: plotting on Mac (Sat Aug 11 2007 - 19:53:35 CDT)
- Broken tube drawing method? (Thu Jul 05 2007 - 00:17:37 CDT)
- RE: Installation Error Involving TLC (Sun May 27 2007 - 22:37:30 CDT)
- RE: Automatically shutting down VMD after NAMD terminates IMD connection (Sun May 20 2007 - 16:20:30 CDT)
- Automatically shutting down VMD after NAMD terminates IMD connection (Sat May 19 2007 - 13:23:42 CDT)
CLEMENTS, ROBERT
- compile windows binary in linux (Mon Sep 13 2010 - 14:17:51 CDT)
Clinton Sylvester
- Watches made to impress (Thu May 01 2008 - 10:40:03 CDT)
cmhartshorn
- Re: selecting waters (Mon May 11 2009 - 17:31:55 CDT)
cmorton_at_medstv.unimelb.edu.au
- Other glasses with CE emitters? (Thu Feb 24 2005 - 17:20:58 CST)
cnu gromacs
- pbc wrap (Fri May 13 2011 - 13:50:30 CDT)
cojocaru vlad
- a question (Mon Feb 05 2001 - 10:24:40 CST)
Cojocaru, Vlad
- RE: How can I draw secondary structures if I only have the carbon alpha coordinates (Thu Aug 18 2011 - 14:46:45 CDT)
Cojocaru,Vlad
- RE: cvs plugins do not compile because of errors in the sgsmooth.C (Tue Mar 31 2009 - 13:40:47 CDT)
- RE: warnings during plugin build (Mon Apr 21 2008 - 18:35:21 CDT)
- RE: warnings during plugin build (Sun Apr 20 2008 - 12:37:39 CDT)
- RE: warnings during plugin build (Sun Apr 20 2008 - 03:51:17 CDT)
- RE: warnings during plugin build (Sat Apr 19 2008 - 17:53:58 CDT)
- RE: warnings during plugin build (Sat Apr 19 2008 - 13:34:22 CDT)
- warnings during plugin build (Sat Apr 19 2008 - 09:09:32 CDT)
- RE: compilation with python 2.5 and file permissions from the CVS repository (Sun Apr 13 2008 - 14:50:44 CDT)
- compilation with python 2.5 and file permissions from the CVS repository (Sun Apr 13 2008 - 12:24:52 CDT)
- RE: bilayer thickness in simulation of POPC membranes (Sun Aug 12 2007 - 02:54:44 CDT)
- RE: bilayer thickness in simulation of POPC membranes (Sat Aug 11 2007 - 10:08:28 CDT)
- RE: save state fails (Thu Aug 02 2007 - 13:41:29 CDT)
- RE: increase light under depth cueing (Sun Apr 29 2007 - 15:12:54 CDT)
- message in the console (Sun Dec 18 2005 - 13:42:18 CST)
- Re: compilation from source: make error message (Mon Dec 12 2005 - 15:06:08 CST)
- sorry John .. I found them (Thu Dec 08 2005 - 15:07:07 CST)
- plugin source tree (Thu Dec 08 2005 - 14:57:46 CST)
- babel compilation error (Thu Dec 08 2005 - 14:26:38 CST)
- python: it doesnt work (Tue Dec 06 2005 - 16:34:13 CST)
- Python libraries for vmd: _tkinter was not enabled in Modules/Setup (Tue Dec 06 2005 - 14:45:55 CST)
- RE: MSMS problem (Mon Dec 05 2005 - 13:36:33 CST)
- the same old IED problem (Sun Dec 04 2005 - 14:01:07 CST)
- MSMS problem (Sun Dec 04 2005 - 06:05:43 CST)
- MSMS problem (Sat Dec 03 2005 - 02:40:29 CST)
Come On
- Re: how to make movies from HISTORY file (Wed Jun 07 2006 - 04:20:15 CDT)
- how to make movies from HISTORY file (Tue Jun 06 2006 - 13:11:55 CDT)
cong chen
- Re: about TkConsole (Wed Apr 08 2009 - 07:27:52 CDT)
- Re: about TkConsole (Tue Apr 07 2009 - 20:04:45 CDT)
- about TkConsole (Mon Apr 06 2009 - 23:16:19 CDT)
- about measure dihedral angle (Thu May 08 2008 - 20:53:08 CDT)
- about writepdb (Mon May 05 2008 - 00:08:53 CDT)
- atomselect (Wed Apr 16 2008 - 19:58:18 CDT)
- Problems with PDB file format in VMD (Thu Mar 27 2008 - 18:55:38 CDT)
- Test (Tue Mar 25 2008 - 18:39:50 CDT)
Corenflos, Steven
- Bad Length and GLXBadLargeRequest errors (Wed Dec 22 2010 - 15:57:58 CST)
Corenflos, Steven Charles
- TCL/VMD problem (Wed Mar 05 2008 - 11:59:20 CST)
- namd help? (Tue Feb 05 2008 - 12:15:47 CST)
- RE: Problems Opening Large .dx File (Wed Oct 17 2007 - 17:09:54 CDT)
- Problems Opening Large .dx File (Mon Oct 15 2007 - 11:30:04 CDT)
Corey Fugate
- Re: paratools charmm partial charges (Mon May 03 2010 - 13:42:02 CDT)
- paratools charmm partial charges (Thu Apr 29 2010 - 23:30:19 CDT)
- Re: Paratools Question (Thu Apr 29 2010 - 01:35:23 CDT)
- Paratools Question (Wed Apr 28 2010 - 23:17:39 CDT)
Corine Brady
- Tag Heuer replicas better than originals (Sun Apr 20 2008 - 07:33:41 CDT)
Cosmin ROMAN
- Re: variable atom number and dynamic bonds (Wed May 05 2004 - 16:53:56 CDT)
- Re: variable atom number and dynamic bonds (Wed May 05 2004 - 17:34:23 CDT)
- variable atom number and dynamic bonds (Wed May 05 2004 - 10:55:19 CDT)
- Re: coloring method User (Mon Mar 22 2004 - 11:56:03 CST)
- coloring method User (Sun Mar 21 2004 - 09:05:23 CST)
Cosseddu, Salvatore
- R: Distance between center of mass of two amino acid residues. (Sun Feb 19 2012 - 13:50:37 CST)
- RE: The spheres become oval, getting close to the screen borders (Sun Feb 05 2012 - 11:43:11 CST)
- The spheres become oval, getting close to the screen borders (Sun Feb 05 2012 - 09:53:57 CST)
- RE: Calling all DCD files in a directory sequentially using CatDCD (Tue Jan 24 2012 - 03:47:29 CST)
- RE: ionic radii of sodium and chloride (Sun Jan 22 2012 - 15:27:30 CST)
- RE: Finding resname without using atomselect? (Tue Nov 01 2011 - 18:35:22 CDT)
- RE: Finding resname without using atomselect? (Tue Nov 01 2011 - 18:48:29 CDT)
- RE: tips for an annoying aliasing task? (Thu May 26 2011 - 15:51:49 CDT)
- RE: Compiling plugins without netcdf support returns an error. (Fri May 13 2011 - 06:41:40 CDT)
- RE: Compiling plugins without netcdf support returns an error. (Thu May 12 2011 - 18:48:11 CDT)
- Compiling plugins without netcdf support returns an error. (Thu May 12 2011 - 15:12:32 CDT)
- Compiling plugins without netcdf support returns an error. (Thu May 12 2011 - 13:28:48 CDT)
- RE: Rotating and saving coordinates of a copy of molecule alongwith original molecule (Thu Mar 31 2011 - 16:59:32 CDT)
cpao_at_Princeton.EDU
- question about rendering images (Wed Sep 22 2004 - 16:54:38 CDT)
craig bullington
- Tcl commands and X11 (Fri Jun 12 2009 - 11:48:37 CDT)
- MSMS installation (Mon Jun 08 2009 - 14:27:57 CDT)
Craig C. Martens
- VMD error messages on intel iMac (Wed Jan 31 2007 - 23:32:32 CST)
Craig Knox
- Re: how do I show contacts with XXX angstroms between a protein and a ligand? (Mon Jun 06 2011 - 11:33:42 CDT)
- Re: mdf molfile plugin reader atom_type bug (Tue Apr 19 2011 - 13:44:42 CDT)
- mdf molfile plugin reader atom_type bug (Mon Apr 18 2011 - 13:03:51 CDT)
- rod-like shapes (Fri Jan 20 2006 - 16:49:21 CST)
Craig Maloney
- psfgen vs. x-plor (Tue Nov 08 2005 - 20:01:52 CST)
- python can't find math module (Tue Nov 01 2005 - 15:50:10 CST)
- MacOS 10.4 problems (Fri Oct 28 2005 - 00:13:25 CDT)
- Re: tcl/python and readline not working (Fri Oct 28 2005 - 00:05:47 CDT)
- tcl/python and readline not working (Wed Oct 26 2005 - 17:48:27 CDT)
- core API? (Wed Oct 26 2005 - 13:46:38 CDT)
- Re: making bonds myself (Tue Oct 25 2005 - 20:05:04 CDT)
- making bonds myself (Tue Oct 25 2005 - 19:16:32 CDT)
Craig Morton
- Dialboxes (Sun Jul 22 2001 - 21:36:49 CDT)
Craig Shepherd
- suggested citation vs. pubmed entry (Thu Jul 01 2004 - 13:18:58 CDT)
- suggested citation versus pubmed entry (Wed Jun 30 2004 - 19:00:19 CDT)
cristiana.carellialinovi_at_rm.unicatt.it
- secondary structure colors in timeline plugin (Fri Sep 14 2007 - 07:51:31 CDT)
- secondary structure colors in timeline plugin (Fri Sep 14 2007 - 06:24:30 CDT)
Cristina
- Re: question about electrostatic map visualizing (Tue Oct 26 2004 - 13:00:13 CDT)
- question about electrostatic map visualizing (Sat Sep 04 2004 - 11:02:47 CDT)
Cristina Rodríguez
- Re: about docking with VMD (Tue Jul 19 2011 - 17:34:25 CDT)
Crowley, Michael
- Reading new amber prmtop formats. (Wed Sep 16 2009 - 12:21:42 CDT)
- too many bonds (Sun Apr 05 2009 - 01:27:03 CDT)
- (no subject) (Sun Apr 05 2009 - 00:48:58 CDT)
CSM USP
- PSF files append!! (Wed Nov 15 2006 - 13:06:06 CST)
cubellis_at_unina.it
- coloring by difference in beta factors (Tue Dec 01 2009 - 06:25:28 CST)
Cun Zhang
- Re: Re: rlwrap problem on (Thu Nov 24 2011 - 07:07:11 CST)
- Re: Installing VMD on Debian Linux (Tue Oct 25 2011 - 03:53:49 CDT)
- Re: Command line for thickness parameter (Tue Aug 09 2011 - 07:56:27 CDT)
- Re: Vmd molecule rotation and translation (Mon Aug 08 2011 - 21:34:01 CDT)
- Re: how to make the picture size suitable for the image size in pov file ? (Fri Dec 31 2010 - 20:08:42 CST)
- how to make the picture size suitable for the image size in pov file ? (Thu Dec 30 2010 - 20:52:14 CST)
- How to change atom type and make it take effect immediately ï¼Ÿ (Sat Nov 13 2010 - 08:17:24 CST)
- Re: Loading DCD Frames in Python (Sun Oct 03 2010 - 00:39:53 CDT)
- Re: protein breaks into parts after converting trajectory file to pdb file (Mon Sep 27 2010 - 20:17:33 CDT)
- Re: vmd display water molecules error (Sun Sep 19 2010 - 21:16:00 CDT)
- Re: vmd display water molecules error (Sun Sep 19 2010 - 20:55:47 CDT)
- vmd display water molecules error (Fri Sep 17 2010 - 02:37:03 CDT)
- Re: compile vmd (Thu Sep 16 2010 - 20:25:45 CDT)
- Re: tcl script (Wed Aug 18 2010 - 03:25:21 CDT)
- Re: where can I download Tachyon version 0.98.10 ? (Wed Aug 18 2010 - 00:36:33 CDT)
- Re: where can I download Tachyon version 0.98.10 ? (Mon Aug 16 2010 - 04:02:55 CDT)
- Re: where can I download Tachyon version 0.98.10 ? (Sun Aug 15 2010 - 08:01:14 CDT)
- Re: where can I download Tachyon version 0.98.10 ? (Sun Aug 15 2010 - 03:16:45 CDT)
- where can I download Tachyon version 0.98.10 ? (Fri Aug 13 2010 - 23:06:19 CDT)
- Re: About Atom Index Order (Thu Aug 12 2010 - 04:58:57 CDT)
- Re: About Atom Index Order (Thu Aug 12 2010 - 03:52:10 CDT)
- About Atom Index Order (Wed Aug 11 2010 - 20:59:08 CDT)
- How to display real time when reading trr file? (Wed Jan 20 2010 - 01:59:20 CST)
- How to display real time when reading trr file? (Wed Jan 20 2010 - 01:59:16 CST)
- Re: Problem when using VMD Python Library (Sun Dec 27 2009 - 08:31:04 CST)
- Problem when using VMD Python Library (Fri Dec 25 2009 - 06:03:46 CST)
cyclone_at_team.planetsweep.com
- New Release: Planetsweep Revolutionizes Internet Browsing (Mon Apr 09 2001 - 13:13:23 CDT)
César Dp
- "Unable to create OpenGL window" (Tue Jul 18 2006 - 15:20:55 CDT)
César Filipe Barbosa Ribeiro
- (no subject) (Sun Dec 02 2001 - 13:50:44 CST)
Dafydd Jones
- VMD 1.8.1 MacOSX running very slow on new G4 1 GHz Powerbook (Thu Oct 23 2003 - 07:00:38 CDT)
Dai Ling
- How to install VMD on AIX5 OpenGL server (Tue Jan 20 2004 - 04:52:47 CST)
Dallas B. Warren
- deleting at vmd console (Thu Feb 15 2007 - 22:23:01 CST)
- HBonds Representation (Tue Oct 10 2006 - 23:04:35 CDT)
- RE: Unexpected End-of-file? (Thu Aug 24 2006 - 17:38:28 CDT)
- RE: What's wrong with my VMD (Thu Oct 13 2005 - 21:02:12 CDT)
- RE: Show a movie from one static structure to another in VMD? (Wed Oct 12 2005 - 19:51:36 CDT)
- RE: How to build a crystal structure from a pdb file ? (Wed Sep 21 2005 - 18:20:02 CDT)
- RE: problem with coloring surface by electrostatic potential (Tue Sep 20 2005 - 20:54:12 CDT)
- RE: small figures (Sun Aug 21 2005 - 18:51:33 CDT)
- RE: What is missing when using VMDSIMPLEGRAPHICS 1? (Fri May 13 2005 - 21:31:43 CDT)
- RE: What is missing when using VMDSIMPLEGRAPHICS 1? (Fri May 13 2005 - 02:07:05 CDT)
- What is missing when using VMDSIMPLEGRAPHICS 1? (Thu May 12 2005 - 23:13:20 CDT)
Dallas Warren
- Re: May I use my own radii? (Thu Mar 17 2005 - 19:00:58 CST)
- Re: install 1.8.3 on RHEL4 (Thu Mar 17 2005 - 16:16:25 CST)
- Re: Catching error info before it shuts down ... (Wed Feb 23 2005 - 17:30:39 CST)
- Re: Catching error info before it shuts down ... (Wed Feb 23 2005 - 16:49:33 CST)
- Re: Catching error info before it shuts down ... (Wed Feb 23 2005 - 16:23:33 CST)
- Re: Catching error info before it shuts down ... (Mon Feb 21 2005 - 16:49:50 CST)
- Re: Catching error info before it shuts down ... (Mon Feb 21 2005 - 00:02:51 CST)
- Re: Catching error info before it shuts down ... (Sun Feb 20 2005 - 16:03:51 CST)
- Catching error info before it shuts down ... (Thu Feb 17 2005 - 23:41:08 CST)
- Re: HOW TO: visualization of electron density maps (Mon Jan 24 2005 - 15:34:41 CST)
- Re: Rotating and translating molecules .. (Wed Jan 19 2005 - 17:04:06 CST)
- Re: Rotating and translating molecules .. (Wed Jan 19 2005 - 15:02:48 CST)
- Rotating and translating molecules .. (Tue Jan 18 2005 - 19:15:56 CST)
- Re: Rendering of screen/display different (Mon Apr 26 2004 - 20:45:57 CDT)
- Re: Rendering of screen/display different (Mon Apr 26 2004 - 20:28:14 CDT)
- Re: Rendering of screen/display different (Sun Apr 25 2004 - 16:11:12 CDT)
- Re: Rendering of screen/display different (Thu Apr 22 2004 - 17:21:36 CDT)
- Re: Rendering of screen/display different (Wed Apr 21 2004 - 16:40:10 CDT)
- Rendering of screen/display different (Wed Apr 21 2004 - 00:36:56 CDT)
- Rendering of screen/display different (Wed Apr 21 2004 - 00:36:12 CDT)
- Re: rotating a representation (Mon Mar 08 2004 - 15:39:53 CST)
- Re: any body else have VMD problems with Linux + ATI FireGL X1-256p + fglrx-glc22-4.3.0-3.7.0 (Wed Feb 11 2004 - 17:14:28 CST)
- Re: New version very slow? (Thu Jan 08 2004 - 20:17:17 CST)
- Re: New version very slow? (Thu Dec 11 2003 - 00:53:38 CST)
- Re: New version very slow? (Wed Dec 10 2003 - 22:21:49 CST)
- New version very slow? (Tue Dec 09 2003 - 19:45:09 CST)
- Setting default viewing window location in XP (Mon Oct 13 2003 - 19:40:48 CDT)
- Re: PLT file format? (Tue Jul 15 2003 - 17:58:30 CDT)
- Re: PLT file format? (Thu Jun 19 2003 - 16:39:43 CDT)
- PLT file format? (Wed Jun 18 2003 - 01:55:31 CDT)
- Re: Support Contours? (Tue Jun 17 2003 - 21:28:26 CDT)
- Support Contours? (Wed Jun 11 2003 - 17:16:09 CDT)
- Re: Molecular dynamics order parameters (Tue May 20 2003 - 16:58:09 CDT)
- Re: Graphics Cards (Mon May 19 2003 - 17:06:30 CDT)
- Graphics Cards (Sun May 18 2003 - 17:55:37 CDT)
- PBC - setting box size (Thu Mar 20 2003 - 20:43:35 CST)
Damian Loska
- VMD, MultiSeq, STAMP (Sun Aug 30 2009 - 11:42:14 CDT)
Damien Touraine
- external ??? (Thu Feb 02 2006 - 09:45:11 CST)
Dan Fishelovitch
- vmd 1.8a21 (Sun Apr 16 2006 - 10:02:34 CDT)
Dan Gordon
- Re: tkconsole and intel macs (Tue May 29 2007 - 19:21:03 CDT)
- tkconsole and intel macs (Sun May 27 2007 - 20:32:11 CDT)
Dan J Martingano
- Using Bigdcd with RMSD Trajectory tool in VMD (Mon Aug 30 2010 - 14:33:29 CDT)
Dan Lussier
- Re: converting old LAMMPS ASCII dumps (Tue Aug 24 2010 - 12:59:40 CDT)
- Re: converting old LAMMPS ASCII dumps (Tue Aug 24 2010 - 09:38:11 CDT)
- converting old LAMMPS ASCII dumps (Mon Aug 23 2010 - 19:08:01 CDT)
- producing high quality video on Mac (Wed Feb 17 2010 - 17:51:03 CST)
- Re: getting other variables out of LAMMPS ascii dump files (Thu Jul 16 2009 - 04:46:03 CDT)
- Re: getting other variables out of LAMMPS ascii dump files (Tue Jul 14 2009 - 17:31:57 CDT)
- getting other variables out of LAMMPS ascii dump files (Mon Jul 13 2009 - 13:44:23 CDT)
- constant region selection for animation (Thu Jun 25 2009 - 09:55:00 CDT)
- Re: pbctools on alpha version (Wed Apr 22 2009 - 03:46:23 CDT)
- pbctools on alpha version (Fri Apr 17 2009 - 09:05:06 CDT)
- Re: OS X intel binary problem (Sun Apr 05 2009 - 09:40:26 CDT)
- OS X intel binary problem (Sun Apr 05 2009 - 03:02:20 CDT)
Dan Michael O. HeggÃ¸
- New crystallography plugin (Wed May 09 2012 - 17:33:04 CDT)
- New crystallography plugin (Wed May 09 2012 - 16:31:33 CDT)
Dan Strahs
- compile problem for VMD1.8.6: OpenGLRenderer.C (Sat Mar 08 2008 - 20:17:23 CST)
- Win64 version (Wed Sep 06 2006 - 14:51:10 CDT)
- Re: dots per inch? (Wed Oct 19 2005 - 16:46:02 CDT)
- matrix transforms of volume objects (Thu Oct 13 2005 - 20:18:06 CDT)
- Re: problem with coloring surface by electrostatic potential (Tue Sep 20 2005 - 18:04:15 CDT)
- Re: problem with coloring surface by electrostatic potential (Tue Sep 20 2005 - 16:40:09 CDT)
- problem with coloring surface by electrostatic potential (Tue Sep 20 2005 - 11:13:58 CDT)
- keywords to access surface? (Fri Sep 16 2005 - 19:44:53 CDT)
- Re: CAVE (Wed Sep 07 2005 - 08:59:22 CDT)
- coloring surface by volume (Fri Aug 26 2005 - 20:05:55 CDT)
Dan thomas Major
- viewing MOs (Fri Aug 28 2009 - 09:47:34 CDT)
Dan White
- Fwd: Crystal eyes stereo on un supported Mac G5 GeForce FX5200 (Fri Aug 18 2006 - 09:15:23 CDT)
- Re: stereo enabler (Fri Mar 31 2006 - 03:08:21 CST)
- Re: Stereo on non supported G5 (Fri Mar 31 2006 - 02:12:42 CST)
- Re: stereo on MacG5 with Nvidia GeForce FX 5200 (Wed Mar 29 2006 - 14:15:45 CST)
- stereo on MacG5 (Wed Mar 29 2006 - 12:36:16 CST)
- Re: OSX quad buffered stereo possible on older G5 with GeForce FX5200! (Mon Mar 13 2006 - 08:17:46 CST)
- Re: vmd movie ppmtompeg (Thu Jan 26 2006 - 01:42:09 CST)
- Re: mpeg1 movie output makes 0Kb file - any one know why? (Thu Jan 12 2006 - 10:42:38 CST)
- mpeg1 movie output makes 0Kb file - any one know why? (Thu Jan 12 2006 - 08:13:42 CST)
Dan Willenbring
- volmap masks (Wed Feb 25 2009 - 14:17:32 CST)
Dan Wright
- Re: VMD window transparent in Opensuse 11.1 ATI system (Tue Jan 20 2009 - 15:13:21 CST)
- Re: Batch mode on Mac OS 10.5.3 (Tue Jun 03 2008 - 11:24:22 CDT)
- Re: Installation and running on VMD on Debian Testing System (Wed Oct 03 2007 - 12:05:38 CDT)
- Re: installing MSMS on OS X 10.4.9 (Intel) (Tue May 08 2007 - 16:58:43 CDT)
- Re: Question about RMSD calculator (Tue Dec 12 2006 - 16:20:58 CST)
- Re: VMD 1.8.5 startup (Thu Nov 09 2006 - 07:47:03 CST)
- Re: vmd-1.8.4b10/Linux amd64 only libstdc++.so.6 dependancy (Wed Feb 08 2006 - 22:26:53 CST)
- Re: Tcl scripting (Wed Feb 08 2006 - 12:14:41 CST)
- Re: illegal mouse mode (Fri Nov 11 2005 - 17:00:07 CST)
- Re: IRIX6 build from CVS (Tue Nov 08 2005 - 10:14:45 CST)
- Re: RMSD of identical pdbs not zero (Tue Sep 13 2005 - 09:30:02 CDT)
- Re: weird atomselect problem (Mon Aug 01 2005 - 15:19:03 CDT)
- Re: weird atomselect problem (Mon Aug 01 2005 - 08:56:56 CDT)
- Color bar in VMD (Fri Apr 22 2005 - 16:23:36 CDT)
- Re: Keyboard mapping incorrect for OS X (Thu Feb 17 2005 - 21:48:21 CST)
- Re: multiple alignment tool (Fri Feb 04 2005 - 16:23:32 CST)
Dani Süveges
- modelling phosphorylation (Mon Sep 18 2006 - 04:45:55 CDT)
Daniel Aguayo
- Re: namd-l: Re: CHARMM parameters for Mn 2+ ion (Fri Mar 25 2011 - 14:45:15 CDT)
- Re: Tachyon Rendering (Tue Oct 27 2009 - 14:14:55 CDT)
- Tachyon Rendering (Tue Oct 27 2009 - 10:27:52 CDT)
- Re: How to generate a monolayer in VMD (Tue Oct 06 2009 - 13:16:43 CDT)
- Re: using VMD 1.8.7 on a Mac (Tue Aug 25 2009 - 12:53:02 CDT)
- Re: Cionize on mac cuda (Mon Aug 17 2009 - 19:28:30 CDT)
- Re: Cionize on mac cuda (Tue Aug 11 2009 - 13:16:04 CDT)
- Re: Cionize on mac cuda (Wed Aug 05 2009 - 20:46:10 CDT)
- Cionize on mac cuda (Wed Aug 05 2009 - 20:29:07 CDT)
- Re: VMD HOLE Result (Tue Jun 02 2009 - 17:03:26 CDT)
- Re: Away from VMD-L/email until July 8th... (Fri Jun 20 2008 - 16:27:34 CDT)
- Re: Electrostatic - PMEpot (Mon Jun 16 2008 - 09:02:08 CDT)
- Electrostatic - PMEpot (Fri Jun 13 2008 - 12:23:22 CDT)
- Re: VMD 1.8.6 GLSL problem (Tue Apr 10 2007 - 10:11:36 CDT)
- Re: VMD 1.8.6 GLSL problem (Tue Apr 10 2007 - 01:21:34 CDT)
- VMD 1.8.6 GLSL problem (Mon Apr 09 2007 - 01:08:04 CDT)
- Re: Locating channel using hole (Tue Mar 06 2007 - 14:28:24 CST)
- Re: Paratool problem (Mon Nov 27 2006 - 21:44:22 CST)
- Re: Paratool problem (Mon Nov 20 2006 - 19:03:17 CST)
- Paratool problem (Wed Nov 15 2006 - 13:29:58 CST)
- Re: protein in membrane (Wed Sep 13 2006 - 21:32:19 CDT)
- Paratool problem (Wed Aug 30 2006 - 18:35:36 CDT)
- Re: Problem with wait (Tue Apr 25 2006 - 14:43:21 CDT)
- Problem with wait (Mon Apr 24 2006 - 20:39:19 CDT)
- Re: Tcl scripting (Tue Feb 07 2006 - 17:34:22 CST)
- Re: dublicated residue name in PDB/PSF (Wed Feb 01 2006 - 12:24:16 CST)
- Re: get values from openDx grid format (Wed Jan 18 2006 - 12:45:07 CST)
- get values from openDx grid format (Mon Jan 16 2006 - 19:25:57 CST)
- Re: get values from openDx grid format (Mon Jan 16 2006 - 19:00:34 CST)
- get values from openDx grid format (Sun Jan 15 2006 - 19:33:45 CST)
Daniel Aiello
- VMD not working on MacOS X 10.6.7 (Thu Jun 23 2011 - 12:26:20 CDT)
Daniel B. Faken
- Python interface (was: Accessing TCL through Python interface) (Fri May 20 2005 - 08:34:00 CDT)
- Accessing TCL through Python interface (Sat May 14 2005 - 15:09:35 CDT)
- 1.8.3 (Fri Jul 30 2004 - 09:36:52 CDT)
Daniel Barsky
- counting selected atoms---selection time series (Wed Aug 31 2005 - 12:57:32 CDT)
- crystallographic symmetry tool (Wed Dec 05 2001 - 19:11:35 CST)
- Re: Prachi Singh's mail (Mon Jun 05 2000 - 16:35:06 CDT)
Daniel Beaman
- Re: Trying to get VMD to run locally while logged into a remote machine (Mon Nov 26 2007 - 20:09:30 CST)
- Re: Trying to get VMD to run locally while logged into a remote machine (Mon Nov 26 2007 - 19:30:32 CST)
- Re: Trying to get VMD to run locally while logged into a remote machine (Mon Nov 26 2007 - 17:27:48 CST)
- Trying to get VMD to run locally while logged into a remote machine (Tue Nov 20 2007 - 16:04:57 CST)
Daniel Farrell
- Re: particular set of xyz coordinates in PDB causes seg fault (Tue Jun 15 2010 - 15:35:50 CDT)
- Re: particular set of xyz coordinates in PDB causes seg fault (Tue Jun 15 2010 - 13:59:50 CDT)
- particular set of xyz coordinates in PDB causes seg fault (Tue Jun 15 2010 - 12:16:58 CDT)
Daniel Gaston
- Re: Some VMD questions (Tue Jun 30 2009 - 13:10:14 CDT)
- Re: Secondary Structure Depiction (Tue Apr 21 2009 - 12:01:08 CDT)
- Re: Secondary Structure Depiction (Tue Apr 21 2009 - 12:02:29 CDT)
- Re: Secondary Structure Depiction (Tue Apr 21 2009 - 10:29:03 CDT)
- Secondary Structure Depiction (Tue Apr 21 2009 - 09:25:08 CDT)
- Re: RMSD-gaps (Mon Apr 20 2009 - 18:57:33 CDT)
Daniel Han
- sidechain atomselection (Wed Jan 26 2005 - 18:53:55 CST)
Daniel Holloway
- Re: Tachyon post-render commands under Win-XP (Tue Jun 07 2011 - 05:07:42 CDT)
- Tachyon post-render commands under Win-XP (Mon Jun 06 2011 - 08:50:17 CDT)
Daniel Hornburg
- Orientation an rotation of molecules in a movie (Sat Oct 09 2010 - 07:26:21 CDT)
- AW: VMD 3D movies rendering (Thu Aug 19 2010 - 03:23:43 CDT)
- AW: VMD 3D movies rendering (Wed Aug 18 2010 - 02:17:49 CDT)
- AW: VMD 3D movies rendering (Tue Aug 17 2010 - 10:50:30 CDT)
- AW: VMD 3D movies rendering (Tue Aug 17 2010 - 05:43:35 CDT)
- VMD 3D movies rendering (Mon Aug 16 2010 - 05:07:59 CDT)
Daniel Kennedy
- problems with ADP vanadate (Sun Sep 16 2007 - 11:12:09 CDT)
- residue missed by psfgen (Mon Aug 20 2007 - 12:09:05 CDT)
- Monte Carlo conformational search (Wed Aug 08 2007 - 11:23:54 CDT)
- water sphere? (Tue Jul 17 2007 - 16:40:57 CDT)
Daniel Schwaab
- Self Assembled Monolayer (Tue May 31 2005 - 09:48:06 CDT)
Daniel Strahs
- Re: keywords to access surface? (Sun Sep 18 2005 - 18:39:00 CDT)
Daniel Svozil
- mmView - a tool for mmCIF exploration (Tue Dec 06 2011 - 05:38:03 CST)
Daniel Terry
- Boolean operators and the new atomsel type (Wed Feb 10 2010 - 12:30:21 CST)
Danielle Chandler
- Re: lipid tail selection (Thu Oct 09 2008 - 14:30:37 CDT)
Darrell Kuykendall
- Re: Paratool Problem (Thu Sep 21 2006 - 10:55:20 CDT)
- Paratool Problem (Thu Sep 21 2006 - 13:50:01 CDT)
Darui Xu
- ribbon representation (Fri Oct 17 2003 - 11:28:31 CDT)
- vrml (Wed Sep 24 2003 - 11:19:37 CDT)
Dave Arias (NelsonDa)
- namd2 unable to find bond. (Wed Mar 07 2012 - 14:58:39 CST)
- Problems with PSFGEN (Mon Feb 27 2012 - 13:18:07 CST)
Dave Humbird
- OpenGLExtensions.C compile problem (Wed Sep 10 2003 - 18:52:59 CDT)
Dave Pugmire
- Re: VMD and chromium (Mon Nov 03 2003 - 16:39:55 CST)
- Re: VMD and chromium (Fri Oct 31 2003 - 17:56:43 CST)
- VMD and chromium (Fri Oct 31 2003 - 14:00:56 CST)
Dave Schall
- Re: 3d viz? (Mon Aug 29 2011 - 14:45:17 CDT)
- Re: 3d viz? (Mon Aug 29 2011 - 13:53:05 CDT)
- 3d viz? (Mon Aug 29 2011 - 09:28:34 CDT)
David A. Horita
- RE: Large positive non-integer charge (Thu May 12 2011 - 16:51:39 CDT)
- keeping original coordinates in trajectory (Wed Mar 09 2005 - 14:27:28 CST)
- RE: amd64/nvidiaFX1100/linux crash (Tue Oct 05 2004 - 17:19:49 CDT)
- amd64/nvidiaFX1100/linux crash (Tue Oct 05 2004 - 16:00:07 CDT)
David A. Case
- Re: time correlation function (Thu Mar 27 2008 - 16:35:11 CDT)
- Re: how to wrap trajectory into truncated octahedral box (Mon Jul 30 2007 - 11:30:15 CDT)
- Re: IED, output from nmode (amber) (Tue Sep 12 2006 - 10:18:35 CDT)
- Re: incompatibility between VMD & NAMD for reading Amber crd files (Wed Jun 23 2004 - 12:39:42 CDT)
David Brandon
- 'Hands-On' Workshop on Computational Biophysics using VMD and NAMD, February 11-15, 2012 in Urbana, Illinois (Thu Nov 17 2011 - 13:53:59 CST)
- 'Hands-On' Workshop on Computational Biophysics using VMD and NAMD, October 17-21, 2011, Bremen, Germany (Fri Jul 29 2011 - 14:15:06 CDT)
- "Hands-On" Workshop on Computational Biophysics, March 21-25, 2011, Atlanta, GA, USA (Tue Dec 21 2010 - 14:38:16 CST)
- "Hands-On" Workshop on Computational Biophysics (Tue Mar 08 2005 - 11:54:35 CST)
David Chalmers
- Graphics cards (Sun Sep 10 2006 - 23:11:58 CDT)
- NewCartoon and mol2 files (Wed May 31 2006 - 06:11:33 CDT)
- Playing part of a trajectory using TCL (Tue May 02 2006 - 05:30:37 CDT)
- Reading in unit cell (Mon Nov 17 2003 - 17:45:13 CST)
- NAMD constant pressure/temp advice (Mon Sep 01 2003 - 03:06:35 CDT)
- Molecular dynamics order parameters (Tue May 20 2003 - 06:47:18 CDT)
- Another feature request for vmd 1.8 (Mon Oct 28 2002 - 20:02:15 CST)
- Using VMD to edit dynamics output (Sun Oct 01 2000 - 22:47:14 CDT)
David Cohen-Tanugi
- Spatial (angular) distribution function (Mon Feb 13 2012 - 13:38:11 CST)
- Script for Angular Distribution Function? (Tue Dec 06 2011 - 09:45:36 CST)
- Rendering long and high-quality movies from VMD (Sun Dec 04 2011 - 21:35:40 CST)
David E. Jones
- Wavefront obj output (Wed Mar 12 1997 - 13:40:03 CST)
- Re: linux graphics adapters? (Thu Jul 13 2000 - 14:43:06 CDT)
David F. Green
- Re: vmd psfgen problem with CHARMM (Thu Jul 15 2004 - 15:29:50 CDT)
David Guertin
- Re: Installation problem with VMD, Multiseq, and BLAST (Thu Feb 03 2011 - 16:00:11 CST)
- Re: Installation problem with VMD, Multiseq, and BLAST (Tue Feb 01 2011 - 12:50:04 CST)
- Installation problem with VMD, Multiseq, and BLAST (Tue Feb 01 2011 - 10:49:24 CST)
- Installation problem with VMD, Multiseq, and BLAST (Tue Feb 01 2011 - 10:15:48 CST)
David Hoover
- surface rendering across X11 windows (Thu Jul 29 2010 - 16:15:48 CDT)
David Horita
- extracting distances (Wed Dec 09 1998 - 17:00:54 CST)
David Huggins
- Re: Installing VMD 1.8.7 on i686/SL5 (Wed Mar 02 2011 - 09:41:34 CST)
- Installing VMD 1.8.7 on i686/SL5 (Wed Mar 02 2011 - 07:38:14 CST)
- Save Atom Selection to DCD (Wed Dec 15 2010 - 13:46:16 CST)
- Problem With No Atoms In Selection (Tue Nov 16 2010 - 14:35:20 CST)
- DCD write/save with a python script (Fri Nov 05 2010 - 14:58:18 CDT)
- Re: Interaction Energy Using Python (Wed Oct 13 2010 - 08:48:12 CDT)
- Loading DCD Frames in Python (Sat Oct 02 2010 - 05:16:05 CDT)
- Interaction Energy Using Python (Wed Sep 29 2010 - 11:04:25 CDT)
David Joiner
- CAVE and Flystick control (Wed May 04 2011 - 14:52:34 CDT)
- Re: Compiling on Windows (Wed Mar 30 2011 - 10:04:46 CDT)
- Re: Compiling on Windows (Wed Mar 23 2011 - 11:14:26 CDT)
- Re: Compiling on Windows (Wed Feb 23 2011 - 20:30:48 CST)
- Re: Compiling on Windows (Wed Feb 23 2011 - 10:20:35 CST)
- Re: Compiling on Windows (Tue Feb 22 2011 - 22:06:24 CST)
- Re: Compiling on Windows (Mon Feb 21 2011 - 21:42:48 CST)
- Re: Compiling on Windows (Mon Feb 21 2011 - 21:09:09 CST)
- Re: Compiling on Windows (Sat Feb 19 2011 - 00:07:25 CST)
- Re: Compiling on Windows (Fri Feb 18 2011 - 22:10:37 CST)
- Re: Compiling on Windows (Fri Feb 18 2011 - 15:29:45 CST)
- Re: Compiling on Windows (Fri Feb 18 2011 - 12:17:38 CST)
- Re: Compiling on Windows (Thu Feb 17 2011 - 19:57:13 CST)
- Compiling on Windows (Thu Feb 17 2011 - 14:12:44 CST)
David Kingsbury
- Re: Coloring by BETA not updating per frame (Sun Jul 24 2005 - 23:39:25 CDT)
- Re: Coloring by BETA not updating per frame (Sun Jul 24 2005 - 20:45:47 CDT)
- Coloring by BETA not updating per frame (Sat Jul 23 2005 - 11:16:09 CDT)
David L. Azevedo
- Problems with PSFGEN in Simulation of Water Permeation through nanotubes (Fri Sep 24 2004 - 08:52:13 CDT)
David Li
- Re: about vmd solvation plugin (Wed Jun 09 2010 - 05:33:10 CDT)
- about vmd solvation plugin (Sat Jun 05 2010 - 18:31:36 CDT)
David Norris
- Re: POV render fails 2nd time (Fri May 26 2000 - 15:15:51 CDT)
- Re: More than 99999 atoms? (Fri May 26 2000 - 09:51:19 CDT)
David Poger
- Creating AVI movies (Mon May 10 2010 - 07:28:24 CDT)
- RE: VMD on MacOSX 10.6 Snow Leopard: fast (Mon Sep 07 2009 - 04:01:48 CDT)
- Re: How to reduce memory usage of a script? (Tue Aug 05 2008 - 02:18:05 CDT)
- Re: How to reduce memory usage of a script? (Tue Aug 05 2008 - 00:24:10 CDT)
- How to reduce memory usage of a script? (Mon Aug 04 2008 - 20:31:10 CDT)
- Re: Problem to find the number of frames of a trajectory (Mon Jul 21 2008 - 23:58:48 CDT)
- Problem to find the number of frames of a trajectory (Mon Jul 21 2008 - 20:19:01 CDT)
- Normal mode analysis (Tue Apr 19 2005 - 08:02:57 CDT)
David Schall
- Dynamic bonds and H2 molecules. (Tue Nov 13 2007 - 11:17:30 CST)
- dynamic bonds question?? (Thu Sep 09 2004 - 16:20:47 CDT)
David Tanner
- Re: Linking to molfile_plugin libraries (Fri May 29 2009 - 13:30:24 CDT)
- Linking to molfile_plugin libraries (Fri May 29 2009 - 13:02:59 CDT)
- Re: Linking to molfile_plugin libraries (Fri May 29 2009 - 13:18:28 CDT)
- Re: Adding two separate pdb files: Lipid Bilayer's with Protein's (Tue May 19 2009 - 11:00:30 CDT)
- Re: Manipulating dcd using script in VMD (Tue Apr 28 2009 - 08:07:24 CDT)
- representation ColorID in Tcl (Wed Nov 19 2008 - 11:25:42 CST)
- Re: pick atom id script (Fri Jul 11 2008 - 09:32:53 CDT)
David Wedner
- a script for angular distribution (Wed Jan 26 2011 - 11:41:51 CST)
- a script for angular distribution (Wed Jan 26 2011 - 10:44:34 CST)
- radial distribution function from the center of mass (Thu Nov 18 2010 - 19:41:56 CST)
- does vmd allow change in volume (Thu Nov 18 2010 - 12:57:00 CST)
- Re: How to Measure Radius of gyration (Wed Nov 17 2010 - 18:40:22 CST)
- Re: How to Measure Radius of gyration (Tue Nov 16 2010 - 13:24:05 CST)
- Measure Radius of gyration (Mon Nov 15 2010 - 12:31:15 CST)
Davide Provasi
- Re: movie out of principal component analysis (Mon Nov 21 2011 - 12:37:44 CST)
- Re: How can I draw secondary structures if I only have the carbon alpha coordinates (Thu Aug 18 2011 - 13:00:15 CDT)
- Re: xy diagonal (Wed Jun 08 2011 - 13:23:40 CDT)
- desmond trajectory plugin (Mon May 02 2011 - 10:40:30 CDT)
davide\.ruffoni
- error with top2psf (Wed Apr 21 2004 - 06:04:51 CDT)
- top2psf (Mon Apr 19 2004 - 09:29:55 CDT)
Davit Hakobyan
- Re: Include HETATM into *.psf file (Thu May 06 2004 - 01:05:11 CDT)
- Include HETATM into *.psf file (Mon May 03 2004 - 14:04:32 CDT)
Dawn
- porcupine plots for PC1 (Sun Dec 06 2009 - 13:29:19 CST)
- time-averaged RMSD per residue (Fri Jul 24 2009 - 08:06:08 CDT)
- the scripting interface (Sun Mar 08 2009 - 10:00:19 CDT)
- correlation (Sun Mar 08 2009 - 03:05:49 CDT)
Dayong He
- The pdb format of vmd (Thu Jan 22 1998 - 11:01:58 CST)
dbg
- VMD installation (Fri Apr 13 2007 - 01:09:54 CDT)
- compile a plugin source code (Fri Apr 13 2007 - 06:29:59 CDT)
DCM CA
- Tracing distances among atoms in a MD simulation (Wed Jun 08 2011 - 20:57:17 CDT)
Dean Appling
- error loading pdb files (Tue Jan 24 2006 - 08:59:08 CST)
Dean Johnson
- Re: RMS fits (Fri Oct 18 2002 - 23:04:11 CDT)
Deanna Fleming
- Replica watch is a perfect gift (Thu Apr 17 2008 - 05:25:56 CDT)
Debasis Sengupta
- different number of atoms in each frame of the trajectory file (Fri Jul 29 2011 - 16:58:34 CDT)
- Bond between two hydrogen atoms (Tue Jun 28 2011 - 12:23:05 CDT)
- Re: setting different bond length for different atom pair (Thu Apr 14 2011 - 12:07:56 CDT)
- setting different bond length for different atom pair (Fri Feb 11 2011 - 12:01:44 CST)
Decai Yu
- RE: xyz file and VASP CHGCAR file do not overlap (Wed Feb 17 2010 - 11:23:56 CST)
- RE: xyz file and VASP CHGCAR file do not overlap (Mon Feb 15 2010 - 10:26:46 CST)
- RE: xyz file and VASP CHGCAR file do not overlap (Fri Feb 12 2010 - 15:20:16 CST)
- xyz file and VASP CHGCAR file do not overlap (Fri Feb 12 2010 - 13:29:44 CST)
Deepak Singh
- output (Sun Nov 14 1999 - 19:48:57 CST)
- question (Sun Nov 14 1999 - 17:00:26 CST)
- font size (Fri Nov 12 1999 - 13:38:53 CST)
- Re: SEGMENT ID (Fri Oct 22 1999 - 09:30:09 CDT)
- SEGMENT ID (Tue Oct 19 1999 - 23:45:46 CDT)
- Re: Selection (Tue Oct 17 2000 - 11:51:33 CDT)
- Re: Selection (Tue Oct 17 2000 - 11:31:12 CDT)
- Selection (Tue Oct 17 2000 - 11:08:51 CDT)
- graphing a dihedral (Sat May 13 2000 - 20:48:31 CDT)
Deepangi Pandit
- Re: 3D protein visualization (Mon Nov 08 2010 - 15:59:08 CST)
- Re: sasa function (Thu Jan 21 2010 - 09:13:45 CST)
- Re: 3D Stereo : Windows 7, nVIDIA GEFORCE (Wed Jan 20 2010 - 09:39:38 CST)
- 3D Stereo : Windows 7, nVIDIA GEFORCE (Tue Jan 19 2010 - 17:32:04 CST)
- Re: Calculating volumes enclosed by SAS (Fri Nov 21 2008 - 16:09:12 CST)
- VMD access using XWIN32 or X-Deep (Fri Oct 12 2007 - 13:20:01 CDT)
- VMD access using XWIN32 or X-Deep (Fri Oct 12 2007 - 11:35:52 CDT)
Deepti Mishra
- Invitation to connect on LinkedIn (Mon Jul 19 2010 - 05:57:43 CDT)
- atom selection (Sun Jun 07 2009 - 23:32:43 CDT)
- difficulty in installing VMD on linux. (Fri Sep 19 2008 - 05:47:18 CDT)
deepti nayar
- tcl script (Wed Aug 18 2010 - 01:14:06 CDT)
deepti sethi
- installation problem on solaris 9 (Sat Dec 31 2005 - 03:57:55 CST)
Delalande
- Compiled version for MacOSX with non-standard options (Thu Apr 17 2008 - 08:37:14 CDT)
DeLano, Warren
- RE: Stereo mode on NVidia/Win2000 (Fri Jan 24 2003 - 13:44:14 CST)
Demet Akten
- ion bead (residue based CG) (Mon Aug 09 2010 - 05:34:26 CDT)
- script for area per lipid (Mon Mar 08 2010 - 06:39:16 CST)
Demetrios Braddock
- map files (Mon Sep 19 2005 - 19:41:39 CDT)
- (no subject) (Thu Sep 15 2005 - 18:40:47 CDT)
Demian Riccardi
- Exceeded maximum number of bonds (Thu May 29 2008 - 13:18:09 CDT)
DENILSON FERREIRA DE OLIVEIRA
- Re: Force Field ToolKit - Angles (Mon Apr 30 2012 - 21:20:54 CDT)
- Re: Force Field ToolKit - Angles (Mon Apr 30 2012 - 21:22:37 CDT)
- Re: Force Field ToolKit - Angles (Mon Apr 30 2012 - 15:22:42 CDT)
- RE: Force Field ToolKit - Angles (Sun Apr 29 2012 - 19:29:33 CDT)
- RE: Force Field ToolKit - Angles (Sun Apr 29 2012 - 18:58:39 CDT)
- Re: Force Field Toolkit: scaling, weight etc (Sun Apr 29 2012 - 18:11:56 CDT)
- Force Field ToolKit - Angles (Sun Apr 29 2012 - 14:39:52 CDT)
- Force Field Toolkit: scaling, weight etc (Sun Apr 29 2012 - 06:37:04 CDT)
denilson_at_dqi.ufla.br
- (no subject) (Thu Oct 06 2011 - 15:12:44 CDT)
- Fw: (Mon Oct 03 2011 - 11:18:01 CDT)
- (no subject) (Mon Oct 03 2011 - 08:56:08 CDT)
Denis Davydov
- bondsrecalc question (Fri Mar 30 2012 - 11:10:14 CDT)
Denise G Teotico
- installing IED on vmd on windows (Tue Jan 03 2006 - 10:06:51 CST)
Denise Teotico
- installing IED on an sgi (Tue Jan 03 2006 - 17:35:07 CST)
Dennis N Bromley
- Re: installing and running VMD on Windows 64-bit (Thu Nov 10 2011 - 12:12:43 CST)
- Re: how do I show contacts with XXX angstroms between a protein and a ligand? (Sat Jun 04 2011 - 21:24:26 CDT)
- Re: how do I show contacts with XXX angstroms between a protein and a ligand? (Sat Jun 04 2011 - 13:09:48 CDT)
- Re: how do I show contacts with XXX angstroms between a protein and a ligand? (Sat Jun 04 2011 - 12:14:40 CDT)
- Re: how do I show contacts with XXX angstroms between a protein and a ligand? (Sat Jun 04 2011 - 12:27:05 CDT)
- how do I show contacts with XXX angstroms between a protein and a ligand? (Fri Jun 03 2011 - 22:27:58 CDT)
Denny Bromley
- Re: invisible files in windows (Wed Jun 15 2011 - 20:41:57 CDT)
Denys Bashtovyy
- hydrophobicity on the Connolly surface (Thu Jan 02 2003 - 07:04:10 CST)
DePuy
- Re: How to enable Python on Windows XP (Sat Jul 31 2004 - 17:12:20 CDT)
Derek Ng
- Background colour (Sat Nov 29 2003 - 23:38:26 CST)
Derek R. Ploor
- cavetracker (Wed Jan 16 2002 - 15:00:31 CST)
dhacademic
- use variable in atomselect (Fri May 27 2011 - 14:55:26 CDT)
- bring z-axis along a new vector (Tue Feb 15 2011 - 14:39:04 CST)
- Re: problem in extracting frame number (Thu Jan 13 2011 - 13:08:17 CST)
- problem in extracting frame number (Thu Jan 13 2011 - 09:45:16 CST)
- question about Ca-dist.tcl (Wed Sep 01 2010 - 10:14:24 CDT)
Dhiraj Srivastava
- topology file in /linux/src/vmd-1.8.6/plugins/noarch/tcl/readcharmmtop1.0/top_all27_prot_lipid_na.inp (Tue Sep 25 2007 - 19:00:30 CDT)
- Re: topology file in /linux/src/vmd-1.8.6/plugins/noarch/tcl/readcharmmtop1.0/top_all27_prot_lipid_na.inp (Tue Sep 25 2007 - 19:33:14 CDT)
diane lynch
- diplaying multiple frames from DCD file (Fri Aug 24 2001 - 15:11:20 CDT)
Dibyadeep Paul
- PSFGEN::: ERROR: failed on end of segment (Wed Feb 13 2008 - 03:38:14 CST)
- Re: merging two pdb files (Thu Nov 08 2007 - 08:24:18 CST)
- merging two pdb files (Thu Nov 08 2007 - 06:06:19 CST)
Dick Medrano
- Charlie Buy your loved one Hermes (Thu Sep 27 2007 - 20:39:34 CDT)
Diego Enry
- Re: HOW TO PARAMETRIZE A LIGAND (Thu Apr 28 2011 - 10:20:02 CDT)
Diego Enry Barreto Gomes
- [request] Best practices for rendering frames and making movies (Tue Feb 21 2012 - 17:22:56 CST)
Diego Javier Alonso de Armiño
- VMD crashes. (Fri Oct 28 2011 - 10:22:19 CDT)
- Conversion of GAMESS Quantum MD trajectory file (Mon Apr 26 2010 - 13:59:49 CDT)
Diehl, Alex (NIH/NCI) [V]
- (no subject) (Tue Dec 07 2010 - 14:06:41 CST)
Dieter Blaas
- RE: installation of VIDEOMACH, how to point to the location of the files (Sun Feb 06 2005 - 16:23:26 CST)
- Re: installation of VIDEOMACH, how to point to the location of the files (Fri Feb 04 2005 - 10:22:34 CST)
- installation of VIDEOMACH, how to point to the location of the files (Fri Feb 04 2005 - 04:37:07 CST)
- HOW TO: visualization of electron density maps (Mon Jan 24 2005 - 04:28:00 CST)
- Re: ERROR) Failed to create Surf atom radii input file (Wed Dec 29 2004 - 02:42:54 CST)
- Re: ERROR) Failed to create Surf atom radii input file (Tue Dec 28 2004 - 10:02:40 CST)
- ERROR) Failed to create Surf atom radii input file (Tue Dec 28 2004 - 04:14:50 CST)
- RE: change location of temporay file storage (Win2k (Tue May 11 2004 - 08:20:31 CDT)
- Surface rendering crashes PC (Tue May 11 2004 - 08:13:20 CDT)
- Surface - upper limit for number of coordinates? (Tue May 11 2004 - 07:08:31 CDT)
- Surface - upper limit for number of coordinates? (Tue May 11 2004 - 07:10:36 CDT)
- Re: change location of temporay file storage (Win2k) (Mon May 10 2004 - 23:59:18 CDT)
- change location of temporay file storage (Win2k) (Thu Mar 11 2004 - 23:55:32 CST)
Dieter Krachtus
- Re: STL files (Fri Aug 08 2003 - 09:04:45 CDT)
Dimitrios Mantzalis
- Re: From Vmd to lammps data file (Mon Feb 27 2012 - 09:07:05 CST)
- From Vmd to lammps data file (Mon Feb 27 2012 - 06:55:34 CST)
DimitryASuplatov
- Selecting AMBER ions Cl- and Na+ using VMD (Wed Mar 17 2010 - 06:42:41 CDT)
- Offset for frame ids in dcd trajectory (Sat May 23 2009 - 11:11:09 CDT)
- Re: Operations with MD frames - acquiring time infromation (Sat May 23 2009 - 09:21:49 CDT)
- Operations with MD frames - acquiring time infromation (Sat May 23 2009 - 08:16:37 CDT)
- Manipulating dcd using script in VMD (Tue Apr 28 2009 - 01:26:05 CDT)
- Calculating system net charge with tcl in VMD (Mon Apr 27 2009 - 04:43:34 CDT)
dimka
- Re: Calculating acyl chain order parameter profile on phospholipid vesicles (Tue Jan 13 2009 - 10:28:43 CST)
- Re: Desmond trajectory conversion to dcd format (Wed Nov 26 2008 - 17:09:57 CST)
- select cylindrical slab (Fri Jun 27 2008 - 12:08:41 CDT)
- sausage view of NMR ensembles (Thu Jan 31 2008 - 23:10:59 CST)
- cloning a molecule (Thu Nov 01 2007 - 13:46:44 CDT)
- dcd file error (Tue Aug 28 2007 - 17:50:52 CDT)
- drawing a membrane (Tue May 08 2007 - 15:10:03 CDT)
- hexagonal box (Tue Apr 17 2007 - 12:11:09 CDT)
- Re: 'SURF' representation problem (Sun Apr 08 2007 - 13:22:11 CDT)
- average structure (Mon Feb 12 2007 - 13:42:33 CST)
- Re: no subject (Mon Sep 18 2006 - 13:50:55 CDT)
- Re: problem in visualizing gaussian log file (Thu Sep 14 2006 - 13:13:33 CDT)
- rdf plugin in vmd 1.85 (Wed Sep 13 2006 - 14:08:29 CDT)
- Re: pass variables from the shell to VMD (Thu Sep 07 2006 - 12:09:32 CDT)
- Re: A error of " transforming dcd into pdb " (Tue Aug 29 2006 - 02:41:47 CDT)
- Re: A error of " transforming dcd into pdb " (Tue Aug 29 2006 - 02:37:14 CDT)
- Re: Fwd: How to pick up the lost periodic information? (Mon May 08 2006 - 12:08:53 CDT)
- Re: peptide builder (Sat Apr 22 2006 - 14:58:34 CDT)
- selection in different pcb images (Tue Apr 11 2006 - 15:02:37 CDT)
- box information (Tue Apr 04 2006 - 17:18:30 CDT)
- Re: VMD Command (Tue Mar 21 2006 - 01:20:06 CST)
- Re: namd-l: what does "patch" mean? (Sun Mar 19 2006 - 23:33:21 CST)
- Re: contact map definition (Mon Mar 13 2006 - 12:03:18 CST)
- Re: vmdtext on Mac OS X (Thu Feb 02 2006 - 18:25:08 CST)
- vmdtext on Mac OS X (Thu Feb 02 2006 - 13:54:32 CST)
- Re: STRIDE error (Fri Nov 18 2005 - 14:50:04 CST)
- STRIDE error (Fri Nov 18 2005 - 13:41:02 CST)
- Lipid area (Mon Nov 07 2005 - 13:10:20 CST)
- dcd tools (Mon Sep 12 2005 - 20:34:20 CDT)
- area of protein cross sections (Mon Aug 15 2005 - 14:29:38 CDT)
- display hexagonal periodic system (Wed Aug 10 2005 - 12:38:54 CDT)
- lipid definition (Wed May 25 2005 - 10:55:04 CDT)
- # of waters limit (Tue Mar 22 2005 - 15:19:51 CST)
Ding, L.
- polymer bead spring model file format (Tue Nov 17 2009 - 11:15:50 CST)
Dipesh Bhattarai
- Re: display of the atom number beyond 100000 in pdb file (Tue Mar 02 2010 - 21:41:53 CST)
- Re: Converting tracker coordinates to molecule coordinate for selection (Fri Feb 12 2010 - 11:57:03 CST)
- Re: Converting tracker coordinates to molecule coordinate for selection (Fri Feb 12 2010 - 09:24:58 CST)
- Converting tracker coordinates to molecule coordinate for selection (Mon Feb 08 2010 - 10:57:03 CST)
- Re: 3D Stereo : Windows 7, nVIDIA GEFORCE (Wed Jan 20 2010 - 16:17:33 CST)
- Re: building VMD is tricky -please help (Mon Nov 30 2009 - 19:32:09 CST)
- Re: Using class UIVR (Tue Nov 24 2009 - 10:27:22 CST)
- Using class UIVR (Mon Nov 23 2009 - 10:59:57 CST)
- Re: Holo-Bench with VMD and Flystick2 and/or Phantom (Tue Nov 17 2009 - 13:04:59 CST)
dipti lele
- Building LPS membrane (Sun Jun 07 2009 - 00:35:50 CDT)
- Loading .vel file in VMD (Thu Nov 20 2008 - 23:03:42 CST)
- Querry (Tue Oct 21 2008 - 08:42:18 CDT)
Diss Romain
- gziped files (Mon Mar 08 2004 - 10:00:49 CST)
divya nayar
- protein-water RDF (Mon Jun 27 2011 - 01:15:21 CDT)
- volume of hydration shells (Thu Jun 23 2011 - 06:12:35 CDT)
- hydration shell volume (Thu Jun 23 2011 - 01:43:55 CDT)
- finding water around protein (Wed Jun 22 2011 - 23:55:35 CDT)
- fit.tcl (Mon Nov 08 2010 - 03:01:14 CST)
- rmsd (Tue Nov 02 2010 - 11:53:26 CDT)
Dmitry A Kondrashov
- vmdmovie in OS X.3 (Mon Nov 24 2003 - 16:42:10 CST)
Dmitry Kovalsky
- numeric python (Mon Mar 08 2004 - 05:01:39 CST)
- sources (Fri Nov 08 2002 - 06:39:40 CST)
- XTC files in 1.8a21 (Wed Oct 16 2002 - 04:08:30 CDT)
- MANDRAKE and VMD (Sun Jun 09 2002 - 03:35:45 CDT)
- Mandrake and VMD (Thu Jun 06 2002 - 04:22:15 CDT)
Dmitry Lupyan
- Re: problem with superimposing two proteins (Fri Jan 11 2008 - 15:26:38 CST)
Dmitry Osolodkin
- Re: GPU choice for large systems (Sat Oct 01 2011 - 08:37:43 CDT)
- GPU choice for large systems (Sat Oct 01 2011 - 06:39:16 CDT)
- Re: installation of vmd 1.8.3 (Mon Jun 06 2005 - 05:57:34 CDT)
- installation of vmd 1.8.3 (Fri Jun 03 2005 - 11:49:21 CDT)
- Any way for comparing two structures?? (Tue May 31 2005 - 09:11:07 CDT)
- Any way for comparing two structures?? (Tue May 31 2005 - 08:58:29 CDT)
Do_Ba Duc
- Problem in linking (with TCL included in webpdbplugin.c) (Tue Dec 06 2005 - 20:55:11 CST)
- Problem with webpdgplugin-s.o and TCL while linking (Tue Dec 06 2005 - 19:42:55 CST)
doan dung
- paratool (Sun Aug 29 2010 - 10:04:29 CDT)
Dolan, Michael (NIH/NIAID) [C]
- SBCG membrane (Wed Dec 24 2008 - 11:59:25 CST)
Dominik Horinek
- atom coloring (Mon Mar 11 2002 - 17:59:30 CST)
- Re: Card for VMD with OpenGL & Linux (Mon Apr 09 2001 - 17:09:45 CDT)
- Card for VMD with OpenGL & Linux (Mon Apr 09 2001 - 16:38:40 CDT)
Dominique Compton
- W4tches from simple to luxurious at Prest1ge Repl1cas (Mon Apr 23 2007 - 17:51:51 CDT)
Dominique Vlieghe
- Problems with povray (Mon Oct 25 2004 - 07:13:11 CDT)
- Re: VMD: Potential Energy Calculation (Fri May 07 2004 - 09:25:39 CDT)
- segid and geometry script (Wed Jun 25 2003 - 08:51:52 CDT)
- Simple potential energy calculations in VMD (Mon Jun 23 2003 - 10:34:45 CDT)
Don Havelberg
- Re: color by resid (Tue Apr 23 2002 - 02:02:23 CDT)
- Re: python create graphics molecule (Tue Mar 26 2002 - 17:19:02 CST)
- Re: python create graphics molecule (Tue Mar 26 2002 - 17:16:00 CST)
- python create graphics molecule (Tue Mar 26 2002 - 07:10:25 CST)
dong
- ´ð¸´: tkcon problem with my vmd (Tue Sep 28 2004 - 01:54:33 CDT)
- tkcon problem with my vmd (Mon Sep 27 2004 - 12:07:50 CDT)
Dong Luo
- Re: Protein-ligand contact (Wed Dec 21 2011 - 11:13:26 CST)
- Re: Save pdb with original numbering (Tue Nov 29 2011 - 10:12:44 CST)
- Re: How to understand the occupancy? (Fri Nov 04 2011 - 14:42:09 CDT)
- Add solvation box tool (Thu Jun 09 2011 - 09:46:33 CDT)
- Re: consultation about metal_enviroment.tcl (Wed Dec 22 2010 - 09:45:19 CST)
- Re: Fwd: autopsf error: failed on end of segment (Wed Dec 22 2010 - 09:51:39 CST)
- Re: Re:pbc and measure hbond (Wed Apr 21 2010 - 10:38:30 CDT)
- Re: What occupancy at the Hbond plugin mean? (Tue Feb 09 2010 - 10:21:29 CST)
- Re: bad text display in tk console (ubuntu 8.04 VMD 1.8.7 linux 32 bit) (Wed Jan 20 2010 - 14:01:45 CST)
- Re: bad text display in tk console (ubuntu 8.04 VMD 1.8.7 linux 32 bit) (Wed Jan 20 2010 - 13:48:09 CST)
- Re: bad text display in tk console (ubuntu 8.04 VMD 1.8.7 linux 32 bit) (Wed Jan 20 2010 - 11:12:11 CST)
- Re: bad text display in tk console (ubuntu 8.04 VMD 1.8.7 linux 32 bit) (Wed Jan 20 2010 - 10:17:57 CST)
- bad text display in tk console (ubuntu 8.04 VMD 1.8.7 linux 32 bit) (Fri Jan 15 2010 - 11:30:48 CST)
- Re: namd-l: how to use measure hbonds to calculate occupancy of all hbonds in simulation? (Wed May 16 2007 - 11:44:01 CDT)
- Re: namd-l: how to use measure hbonds to calculate occupancy of all hbonds in simulation? (Tue May 15 2007 - 18:27:01 CDT)
Dong Xu
- Re: Desmond trajectory conversion to dcd format (Wed Nov 26 2008 - 17:15:25 CST)
- Desmond trajectory conversion to dcd format (Wed Nov 26 2008 - 16:24:57 CST)
- Pairwise RMSD (Fri Oct 03 2008 - 10:10:16 CDT)
- How to render an image like this one with VMD? (Wed Sep 24 2008 - 20:58:12 CDT)
- QR factorization for structural alignment (Thu Jul 10 2008 - 17:30:39 CDT)
- QR factorization for structural alignment (Sat Jul 05 2008 - 17:06:29 CDT)
- Re: Image rendering using pov-ray (Fri Jun 13 2008 - 14:35:45 CDT)
- Re: Image rendering using pov-ray (Thu Jun 12 2008 - 21:31:03 CDT)
- Image rendering using pov-ray (Mon Jun 09 2008 - 20:35:55 CDT)
- mass weighted rms fit (Sun May 25 2008 - 11:14:47 CDT)
- Re: Can not enter text in VMD plugin window (Mon Apr 28 2008 - 13:04:52 CDT)
- Re: Can not enter text in VMD plugin window (Sat Apr 26 2008 - 00:10:04 CDT)
- Can not enter text in VMD plugin window (Fri Apr 25 2008 - 21:21:16 CDT)
- Re-create Figures in VMD Images and Movies Tutorial (Mon Mar 17 2008 - 16:17:57 CDT)
- Re: calculate volume (Sat Mar 08 2008 - 17:28:39 CST)
- Re: calculate volume (Sat Mar 08 2008 - 11:09:36 CST)
- Re: calculate volume (Fri Mar 07 2008 - 22:46:28 CST)
- calculate volume (Fri Mar 07 2008 - 21:20:40 CST)
- Re: SASA calculation (protein + small molecules) (Sun Feb 24 2008 - 20:42:44 CST)
- measure binding site SASA (Sun Feb 24 2008 - 12:38:49 CST)
- VMD limitation for loading large trajectory file (Fri Feb 15 2008 - 16:48:45 CST)
DongHoon Chung
- Coloring based on POS (Thu Mar 11 2004 - 03:11:40 CST)
- RE: Non-serious query (Thu Mar 04 2004 - 18:16:23 CST)
dongsheng lei
- Re: Extract parameters of Shape-based Coarse Graining model from AA simulation (Thu Oct 23 2008 - 04:46:50 CDT)
- Extract parameters of Shape-based Coarse Graining model from AA simulation (Wed Oct 22 2008 - 01:54:54 CDT)
Dongsheng Zhang
- Re: render (Tue Apr 01 2008 - 14:22:17 CDT)
- render (Mon Mar 31 2008 - 15:51:35 CDT)
- pbc join (Sun Mar 09 2008 - 22:44:32 CDT)
- error in loading psf file generated from lammps data file. (Thu Jan 17 2008 - 16:23:27 CST)
- display bonds (Fri Dec 14 2007 - 08:52:24 CST)
- how to prevent molecule jump around (Wed Jul 05 2006 - 00:35:41 CDT)
- Re: vmd display problem (Mon Jun 19 2006 - 13:17:23 CDT)
- vmd display problem (Sun Jun 18 2006 - 22:04:53 CDT)
- how to change paramters in making movie (Wed Jun 14 2006 - 12:33:09 CDT)
- (no subject) (Tue Nov 18 2003 - 17:24:20 CST)
- (no subject) (Wed May 21 2003 - 23:13:52 CDT)
Donnie Skinner
- Re: Your Val1um 0rder #63504 (Tue Apr 24 2007 - 13:01:46 CDT)
Donovan B.T.
- Getting PSF in right format from .gro file (Wed May 16 2012 - 08:54:59 CDT)
- AutoPSF (Fri Apr 20 2012 - 04:29:53 CDT)
- RE: measure dipole (Wed Mar 30 2011 - 08:16:53 CDT)
- RE: measure dipole (Mon Mar 28 2011 - 08:26:36 CDT)
- RE: measure dipole (Fri Mar 25 2011 - 08:18:38 CDT)
- measure dipole (Thu Mar 24 2011 - 13:07:28 CDT)
doug irvine
- VMD working on Linux i386 w/ Mesa & Nvidia (Wed Nov 17 1999 - 14:19:21 CST)
Douglas Dahl
- W4tches from simple to luxurious at Prest1ge Repl1cas (Wed Aug 22 2007 - 13:49:57 CDT)
Dow Hurst
- Re: create surface of overlapping VdW volume (Sat Jun 11 2011 - 11:08:43 CDT)
- create surface of overlapping VdW volume (Fri Jun 10 2011 - 18:17:50 CDT)
- Re: Android support (Sun Mar 06 2011 - 13:55:02 CST)
- Android support (Sun Mar 06 2011 - 11:24:15 CST)
Dow Hurst DPHURST
- OpenSuSE 10.3: ppmtompeg and MovieMaker plugin (Fri Dec 14 2007 - 12:14:46 CST)
- status of psfgen support for CHARMM psf format (Mon Oct 22 2007 - 09:37:30 CDT)
- Re: GLSL rendering problems (??) (Mon May 14 2007 - 10:39:14 CDT)
- Re: GLSL error (Tue Jan 30 2007 - 11:08:22 CST)
- GLSL error (Mon Jan 29 2007 - 14:40:14 CST)
- Re: How to make bold font? (Thu Jun 01 2006 - 09:12:20 CDT)
- Re: RMSD problem on 1.8.4a22 (Linux OpenGL) (Thu Dec 15 2005 - 09:15:09 CST)
- Re: VMD crashes with FX440 and RH Entreprise 4.0 (Tue Sep 06 2005 - 13:10:51 CDT)
- Re: CMYK images (Fri Jul 29 2005 - 19:54:46 CDT)
- Re: CMYK images (Fri Jul 29 2005 - 19:51:30 CDT)
- Nvidia update 1.0-7664 success for VMD-1.8.3 (Tue Jun 21 2005 - 16:49:37 CDT)
- test email (Tue Jun 21 2005 - 14:32:05 CDT)
- Create a new color category (Tue Jun 21 2005 - 12:25:52 CDT)
Dr Gavin Seddon
- Re: vmd crashes on startup (Thu Oct 20 2005 - 13:45:29 CDT)
- Re: vmd crashes on startup (Thu Oct 20 2005 - 13:29:47 CDT)
- Re: vmd crashes on startup (Thu Oct 20 2005 - 13:24:45 CDT)
- Re: vmd crashes on startup (Thu Oct 20 2005 - 04:13:46 CDT)
- vmd crashes on startup (Wed Oct 19 2005 - 07:40:54 CDT)
Dr Nick
- 20 colors for 20 amino acids! (Fri Jan 17 2003 - 11:23:28 CST)
Dr Nicolas Le Novere
- Re: More than 99999 atoms? (Mon May 29 2000 - 08:04:29 CDT)
- surface in raster3d (Thu Apr 06 2000 - 07:18:30 CDT)
Dr. Dan White
- movie maker plugin doesn't load (Fri Aug 16 2002 - 10:54:22 CDT)
- VMD stereo with Radeon 8500 and crystal eyes on Xig Xserver (Fri Jul 12 2002 - 08:10:32 CDT)
Dr. Daniel James White PhD
- MSMS on linux and Draw Multiple Frames in VMD 1.8.3 (Thu Apr 14 2005 - 09:17:40 CDT)
- Fwd: linux FC3 VMD vs insightII conflict (Wed Jan 12 2005 - 06:36:57 CST)
- Re: vmd not starting up on Fedora core 3 linux , InsightII to blame (Wed Jan 12 2005 - 01:33:05 CST)
- Re: vmd not starting up on Fedora core 3 linux , nVidia quadro 980 XGL, nVidia 6629 driver (Wed Jan 12 2005 - 00:53:22 CST)
- Re: vmd not starting up on Fedora core 3 linux , nVidia quadro 980 XGL, nVidia 6629 driver (Tue Jan 11 2005 - 07:42:45 CST)
- Re: vmd not starting up on Fedora core 3 linux , nVidia quadro 980 XGL, nVidia 6629 driver (Mon Jan 10 2005 - 01:20:31 CST)
- Re: vmd not starting up on Fedora core 3 linux , nVidia quadro 980 XGL, nVidia 6629 driver (Fri Jan 07 2005 - 07:12:37 CST)
- vmd not starting up on Fedora core 3 linux , nVidia quadro 980 XGL, nVidia 6629 driver (Fri Jan 07 2005 - 06:13:04 CST)
- vmd not starting up on Fedora core 3 linux , nVidia quadro 980 XGL, nVidia 6629 driver (Fri Jan 07 2005 - 02:15:08 CST)
- vmd not starting up on Fedora core 3 linux , nVidia quadro 980 XGL, nVidia 6629 driver (Thu Jan 06 2005 - 05:27:34 CST)
- ATI fglrx 3.11 drivers for Radeon 8500 LE with linux 2.6 kernel, quad buffered stereo on sony G520??? (Wed Aug 25 2004 - 03:44:24 CDT)
- enable direct rendering DRI on fedora core 2 (Fri Jun 11 2004 - 06:50:34 CDT)
- Re: how to make unique chain pdb identifier of virus capsid 60 mer? (Thu Apr 15 2004 - 09:00:24 CDT)
- Re: how to make whole biological unit / virus capsid from pdb BIOMT records (Tue Apr 06 2004 - 04:12:58 CDT)
- how to make whole biological unit / virus capsid from pdb BIOMT records (Mon Apr 05 2004 - 10:35:06 CDT)
- .cshrc error prevents VMD working on OSX10.3.3??? or something else??? (Tue Mar 23 2004 - 03:36:59 CST)
- Fwd: Digest (Wed Mar 17 2004 - 03:32:00 CST)
- digest form (Tue Mar 16 2004 - 03:34:05 CST)
- Re: ATI radeon 8500 and Linux quad buffered stereo (Tue Sep 02 2003 - 03:09:28 CDT)
- osX anti aliasing and rendering speed / window size on linux (Mon Jun 16 2003 - 04:45:54 CDT)
- Re: double image for one eye with crystal eyes stereo (Fri Jun 13 2003 - 03:50:12 CDT)
- Re: double image for one eye with crystal eyes stereo (Fri Jun 13 2003 - 03:38:01 CDT)
- Re: double image for one eye with crystal eyes stereo (Thu Jun 12 2003 - 09:48:30 CDT)
- NAMD IMD large protein model (Thu Jun 12 2003 - 08:51:23 CDT)
- double image for one eye with crystal eyes stereo (Thu Jun 12 2003 - 08:38:37 CDT)
- psfgen error with alias residue (Mon Jun 09 2003 - 08:48:32 CDT)
- gamepad on linux? (Wed Apr 02 2003 - 10:52:15 CST)
- Re: Suggested graphic card :: LINUX (Tue Mar 04 2003 - 02:31:52 CST)
- Re: hard ware stereo (Mon Jan 27 2003 - 04:14:09 CST)
- Re: saving a tiff file (Wed Dec 18 2002 - 05:16:45 CST)
Dr. David Gregory
- Re: No Display when running vmd 1.3 (Fri May 28 1999 - 08:31:57 CDT)
- No Display when running vmd 1.3 (Thu May 27 1999 - 14:53:51 CDT)
Dr. Luis Rosales Leon
- Re: combine together two PBD/PSF files (Wed Nov 07 2007 - 18:50:50 CST)
- VRPN, phantom and VMD... (Wed Jul 04 2007 - 17:12:38 CDT)
Dr. Mick Knaggs
- Mesa libs + Mac OS X + HW stereo + vmd (Fri Jun 17 2005 - 14:28:30 CDT)
Dr. Paul Fons
- memory problems (Sat Aug 25 2001 - 19:54:48 CDT)
- Programming problem (making bonds) (Sat Aug 25 2001 - 19:51:09 CDT)
Dr. Peter Schellenberg
- ATI crashes, use of setenv VMD_EXCL_GL_EXTENSIONS (Mon Jun 06 2005 - 02:28:21 CDT)
Dr. Seth Olsen
- Changing decimal places in a label? (Wed Feb 03 2010 - 23:21:12 CST)
- VMD Does not start on my MacBook (Wed Jul 16 2008 - 21:15:57 CDT)
- Problems with a multiple orbital cube file (Fri Sep 14 2007 - 01:49:38 CDT)
- Re: Python development (Tue Jan 30 2007 - 19:51:12 CST)
- Re: problem viewing cube files (Thu Oct 05 2006 - 03:32:34 CDT)
- problem viewing cube files (Tue Oct 03 2006 - 21:10:33 CDT)
- Changing Text Style (Tue Oct 03 2006 - 21:52:35 CDT)
- Re: What unit system does VMD use? (Thu Sep 21 2006 - 21:50:58 CDT)
- Re: What unit system does VMD use? (Thu Sep 21 2006 - 21:38:01 CDT)
- Re: What unit system does VMD use? (Thu Sep 21 2006 - 21:30:53 CDT)
- Re: What unit system does VMD use? (Thu Sep 21 2006 - 21:25:09 CDT)
- How to hide graphics molecules in a python script? (Thu Sep 21 2006 - 20:44:28 CDT)
- What unit system does VMD use? (Thu Sep 21 2006 - 19:21:09 CDT)
- Re: importing VMD python modules from external interpreterr (Wed Sep 20 2006 - 01:44:24 CDT)
- importing VMD python modules from external interpreterr (Tue Sep 19 2006 - 22:19:02 CDT)
- How do I change details of a drawing style using the text interface? (Fri May 19 2006 - 21:52:05 CDT)
- Problem building vmd 1.8.3 and destroyed usable 1.8.2 version (Mon Sep 26 2005 - 00:28:22 CDT)
Dr. Y. U. Sasidhar
- Re: initial run by vmd on loading a trajectory (Thu Jan 30 2003 - 05:32:53 CST)
- initial run by vmd on loading a trajectory (Tue Jan 28 2003 - 22:58:17 CST)
Dr. Zaheer-ul-Haq Qasmi
- Looking for assistance on vmd (Sat Apr 17 2004 - 11:45:53 CDT)
DreamCatcher
- Questions about trajectory files obtained from LAMMPS Molecular dynamics with Reax Force field (Fri Apr 29 2011 - 07:48:18 CDT)
dstrahs_at_pace.edu
- Re: An remark on PoV output (Mon May 14 2007 - 17:52:17 CDT)
dtp3+_at_pitt.edu
- RE: Re: Re: your mail (Tue Jan 04 2005 - 13:12:57 CST)
- (no subject) (Mon Jan 03 2005 - 14:33:55 CST)
Dudo
- Re: Use of coarse grain plugin (Wed Feb 08 2012 - 18:47:01 CST)
- Re: represent water molecules (Mon Jan 02 2012 - 08:49:57 CST)
- Re: Script for Angular Distribution Function? (Tue Dec 06 2011 - 10:30:41 CST)
- Re: RDF calculation for production steps (Thu Sep 15 2011 - 15:23:15 CDT)
- Re: Re: namd-l: how to generate transparent figures? (Mon Jul 25 2011 - 05:13:50 CDT)
- Re: VMD and Kinect (Wed Mar 09 2011 - 12:27:40 CST)
- Re: removing all water molecules (Thu Jan 27 2011 - 09:41:49 CST)
- Re: removing all water molecules (Thu Jan 27 2011 - 08:05:54 CST)
- Re: removing all water molecules (Thu Jan 27 2011 - 07:40:16 CST)
- Re: VTF trajectory from coarse grained ESPReSo simulations. Visualization in Windows. (Wed Jan 12 2011 - 12:16:39 CST)
- VTF trajectory from coarse grained ESPReSo simulations. Visualization in Windows. (Wed Jan 12 2011 - 06:41:27 CST)
dwang_at_cs.kent.edu
- a question about "measure fit" (Thu Jun 22 2006 - 20:36:59 CDT)
dwds gerge
- re: Bug in 'source' command or in for loop? (Tue Sep 13 2011 - 19:37:08 CDT)
- Bug in 'source' command or in for loop? (Tue Sep 13 2011 - 12:06:10 CDT)
Eamon Caddigan
- Re: display of electron density maps (Thu Jun 03 2004 - 11:33:00 CDT)
- Re: Help about Contact Map plugin. Still puzzled by atom selection. (Thu May 27 2004 - 17:48:01 CDT)
- Re: Rendering of screen/display different (Wed Apr 21 2004 - 10:24:16 CDT)
- APBS Plugin for VMD (Mon Feb 23 2004 - 14:14:33 CST)
- Re: antialiasing problem (Thu Nov 20 2003 - 15:15:00 CST)
Ebrahim Mayat
- Re: vmd 1.8.3 on my mac (Sun Feb 20 2005 - 08:42:49 CST)
- CAVE on OS X (Mon Dec 13 2004 - 02:57:27 CST)
Eckhart Guthöhrlein
- Re: Molscript (Thu Aug 26 2004 - 07:14:17 CDT)
- Re: Molscript (Wed Aug 25 2004 - 04:05:04 CDT)
- Re: no main window (Tue Aug 24 2004 - 09:25:07 CDT)
- Molscript (Tue Aug 24 2004 - 06:16:30 CDT)
- no main window (Tue Aug 24 2004 - 06:11:06 CDT)
- same view in VMD and Molscript (Tue Feb 25 2003 - 10:22:10 CST)
Ed Lowe
- enantiomers (Fri Jun 20 2008 - 08:38:06 CDT)
ed mendez
- Changing colors (Sun Nov 27 2005 - 06:30:51 CST)
Edelmiro Moman
- Re: (Sat Aug 21 2010 - 04:03:35 CDT)
- Re: MDFF Query: how to convert XPLOR style density maps to DX or SITUS format (Sat Jul 24 2010 - 03:50:58 CDT)
- Mol2 with Charmm atom types? (Mon May 31 2010 - 04:45:51 CDT)
- Re: (Mon Mar 08 2010 - 14:05:52 CST)
- Re: measure command problem (Tue Mar 02 2010 - 13:53:08 CST)
- Re: Graphics card for molecular graphics (Thu Feb 11 2010 - 06:03:47 CST)
- Graphics card for molecular graphics (Sun Jan 24 2010 - 10:57:42 CST)
Eden Duthie
- MSMS of selection's contribution to total surface (Tue Nov 29 2005 - 18:10:05 CST)
Edith Euan
- Problems with VMD installation Fedora 12 64bits (Sat Mar 13 2010 - 00:57:39 CST)
Eduard Schreiner
- Re: Aligning two proteins of varying atom numbers (Thu May 19 2011 - 12:07:00 CDT)
- Re: trajectory of water within 5 A of protein (Tue May 10 2011 - 09:51:13 CDT)
- Re: hello (Fri Apr 29 2011 - 06:40:50 CDT)
- Re: problem in extracting frame number (Thu Jan 13 2011 - 10:33:34 CST)
- Re: Regarding fitframes.tcl (Tue Jan 04 2011 - 07:48:33 CST)
- Re: Regarding fitframes.tcl (Tue Jan 04 2011 - 05:31:58 CST)
- Re: reading of one frame from DCD file (Tue Nov 30 2010 - 19:44:55 CST)
- Re: Rendering .dat files created from Movie Maker using Tachyon (Tue Nov 16 2010 - 23:39:58 CST)
- Re: Rendering .dat files created from Movie Maker using Tachyon (Tue Nov 16 2010 - 11:25:07 CST)
- Re: Measure Radius of gyration (Mon Nov 15 2010 - 13:47:16 CST)
- Re: rmsd (Tue Nov 02 2010 - 13:01:09 CDT)
- Re: Bond Colors (Wed Oct 13 2010 - 12:14:46 CDT)
- Re: RE: trouble with measure hbonds (Tue Oct 05 2010 - 11:33:03 CDT)
- Re: trouble with measure hbonds (Mon Oct 04 2010 - 15:53:17 CDT)
- Re: write pdbs of selected frames of a trajectory (Wed Sep 22 2010 - 15:09:14 CDT)
- Re: superimpose residues across several protein structures (Wed Sep 22 2010 - 08:52:20 CDT)
- Re: creating psf file (Sun Sep 19 2010 - 21:39:29 CDT)
- Re: turning on the tcl/tk console in .vmdrc (Tue Sep 14 2010 - 07:35:55 CDT)
- Re: Autoionize question for DNA molecule (Mon Jul 12 2010 - 11:08:02 CDT)
- Re: DPPC (Thu Jul 08 2010 - 23:42:27 CDT)
- Re: SASA and SESA (Sun Jan 24 2010 - 15:38:54 CST)
- Re: VMD movie from XYZ coordinate if file has two type of atoms] (Tue Dec 11 2007 - 07:49:44 CST)
- Re: VMD movie from XYZ coordinate if file has two type of atoms (Tue Dec 11 2007 - 02:36:07 CST)
- Re: problem with saving changed coordinates in a new state (Thu Nov 29 2007 - 02:24:56 CST)
- Re: superposition of two complex according to the same inhibitor (Tue Oct 23 2007 - 01:05:26 CDT)
- numbonds (Tue Aug 28 2007 - 10:54:20 CDT)
- Re: atomselect (Tue Jul 10 2007 - 09:23:23 CDT)
- Re: regarding selecting complete residues within a distance (Fri May 25 2007 - 07:41:48 CDT)
- Re: Displaying the periodic box ... (Thu May 24 2007 - 12:39:40 CDT)
- Re: average structure (Tue Feb 13 2007 - 06:52:21 CST)
- Re: wildcards in atomselect command (Fri Jan 26 2007 - 10:13:27 CST)
- Re: adding new atoms to a molecule from a script (Thu Oct 05 2006 - 08:20:54 CDT)
- Re: no main window with ATI openGL (Wed Oct 04 2006 - 08:05:37 CDT)
- Re: Hbond donor-acceptor distances (Wed Oct 04 2006 - 06:15:38 CDT)
- Re: A error of " transforming dcd into pdb " (Tue Aug 29 2006 - 04:46:24 CDT)
- Re: md trajectory: centering/h-bonb residence/coordination number (Mon Aug 21 2006 - 12:09:34 CDT)
- Re: Problem with Hg, H (Wed May 10 2006 - 10:41:34 CDT)
- Re: How to select water near a certain residue if it is outside of the water box? (Wed May 10 2006 - 04:22:34 CDT)
- Re: search path and naming conventions for custom TCL scripts (Wed May 03 2006 - 12:35:15 CDT)
- Re: how to plot waters h-bonded to a protein? (Thu Apr 06 2006 - 12:09:19 CDT)
- Re: PBC and H-bond detection (Fri Dec 09 2005 - 04:41:10 CST)
- Re: dihedral angles (Tue Dec 06 2005 - 09:35:22 CST)
- Re: new coordinates (Thu Oct 06 2005 - 06:18:01 CDT)
- Re: quality rendering (Thu Jul 14 2005 - 01:46:46 CDT)
- Re: Re: wrong bond drawing with pdb files (Thu Jul 14 2005 - 01:38:46 CDT)
- Re: display Gaussian cube file (Wed Jul 13 2005 - 04:05:27 CDT)
- Re: wrong bond drawing with pdb files (Tue Jul 12 2005 - 11:01:24 CDT)
- Re: TCL for adding bonds? (Fri Jul 08 2005 - 03:26:15 CDT)
- Re: a suggestion and query on command usage (Sat Jul 02 2005 - 10:01:53 CDT)
- Re: Render to Tachyon Internal in a Tcl script (Thu Jun 16 2005 - 01:41:30 CDT)
- Re: writing DCD files (Fri May 06 2005 - 06:57:18 CDT)
- Re: bond missimg (Mon Apr 25 2005 - 08:58:44 CDT)
- Re: drawing the edges of a non-rectangular box (Fri Mar 11 2005 - 13:02:50 CST)
- Re: Is it possible to select a sub-trajectory specificities. (Thu Mar 03 2005 - 06:16:58 CST)
- Re: Is it possible to select a sub-trajectory specificities. (Wed Mar 02 2005 - 05:18:30 CST)
- Re: Align protein with different number of aminoacid (Fri Feb 11 2005 - 04:42:24 CST)
- Re: VMD and CPMD (Wed Jan 26 2005 - 08:56:00 CST)
Eduardo
- Re: Matrix based intermediate rotations (Fri Sep 03 2010 - 11:16:26 CDT)
- Re: Charmm parameters for Polybutylene terephthalate (PBT) (Thu Mar 11 2010 - 01:33:56 CST)
- Re: density profiles (Wed Apr 22 2009 - 22:17:42 CDT)
Eduardo Cruz-Chu
- Re: namd-l: Atom movement within a range of Z value (Tue May 11 2010 - 15:45:59 CDT)
- Re: Manipulating dcd using script in VMD (Tue Apr 28 2009 - 01:55:25 CDT)
- Re: Calculating system net charge with tcl in VMD (Mon Apr 27 2009 - 10:50:01 CDT)
- Re: Selecting the sides of a benzene ring (Tue Jul 22 2008 - 11:21:42 CDT)
Eduardo Oliveira
- measure fit - wrong alignment (Thu May 26 2011 - 05:56:40 CDT)
Edward J. Smiley Jr.
- Coloring with an XYZ file (Tue May 04 2004 - 15:25:50 CDT)
Edward Lyman
- autoionize adds too many ions (Fri Jul 15 2011 - 14:34:48 CDT)
- tips for an annoying aliasing task? (Thu May 26 2011 - 10:33:27 CDT)
- Re: SASA calculation using periodic images? (Tue May 03 2011 - 09:34:57 CDT)
- Re: psfgen: error processing bonds (Sun May 01 2011 - 16:14:33 CDT)
- Re: psfgen: error processing bonds (Sat Apr 30 2011 - 10:39:47 CDT)
- Re: psfgen: error processing bonds (Sat Apr 30 2011 - 10:16:16 CDT)
- Re: psfgen: error processing bonds (Fri Apr 29 2011 - 14:30:53 CDT)
- Re: psfgen: error processing bonds (Fri Apr 29 2011 - 08:00:52 CDT)
- psfgen: error processing bonds (Fri Apr 22 2011 - 10:03:30 CDT)
- dtr plugin: does it work for forces traj? (Fri Nov 05 2010 - 11:03:55 CDT)
- Re: Solvent Accessible Surface (Thu Aug 12 2010 - 14:10:25 CDT)
- Re: making a movie of an unusual trajectory (Fri Jul 16 2010 - 13:09:09 CDT)
- Re: making a movie of an unusual trajectory (Fri Jul 16 2010 - 12:34:06 CDT)
- making a movie of an unusual trajectory (Fri Jul 16 2010 - 11:54:47 CDT)
- Re: -samples flag of measure sasa (Fri Jun 18 2010 - 14:15:10 CDT)
- -samples flag of measure sasa (Thu Jun 17 2010 - 11:47:34 CDT)
- Re: units of "measure dipole" (Tue May 11 2010 - 15:35:56 CDT)
- units of "measure dipole" (Tue May 11 2010 - 14:47:45 CDT)
- Re: 2 questions about "measure sasa" (Fri Feb 26 2010 - 13:44:59 CST)
- Re: 2 questions about "measure sasa" (Thu Feb 25 2010 - 17:05:37 CST)
- 2 questions about "measure sasa" (Wed Feb 17 2010 - 14:40:53 CST)
- namd2.7b1, tip4p, and dummies (Wed Sep 30 2009 - 01:36:06 CDT)
- memory allocation issue (Wed May 06 2009 - 13:37:04 CDT)
- SMD question (Thu Feb 19 2009 - 14:00:32 CST)
- trans routine (Fri Jan 16 2009 - 12:49:24 CST)
- equilibrating a membrane patch (Mon Dec 08 2008 - 13:25:30 CST)
- doubling a membrane (Mon Nov 10 2008 - 16:42:13 CST)
- conformations of a linker (Fri Oct 31 2008 - 14:07:08 CDT)
- move matrix definition (Tue Oct 28 2008 - 11:39:42 CDT)
- pbc join (Tue Sep 02 2008 - 13:34:46 CDT)
Edward P. Manning
- PDB COORDINATES (Sun Jul 26 2009 - 19:08:28 CDT)
Edward Patrick Obrien
- Re: Surface accesible area w/v1.8.3beta (Mon Feb 07 2005 - 12:47:34 CST)
- Re: Surface accesible area w/v1.8.3beta (Mon Feb 07 2005 - 12:03:46 CST)
- Surface accesible area w/v1.8.3beta (Mon Feb 07 2005 - 11:26:16 CST)
Edwina Grove
- Replica watches make great gifts (Sun May 04 2008 - 01:24:11 CDT)
ee_at_post.harvard.edu
- VMD + MSMS + WinNT (Thu Nov 30 2000 - 15:27:31 CST)
effekri_at_infinito.it
- error python (Mon Sep 13 2004 - 02:18:25 CDT)
Ekta Khurana
- Re: Multiseq in text mode (Wed Feb 09 2011 - 13:23:19 CST)
- Re: Multiseq in text mode (Tue Feb 08 2011 - 08:06:16 CST)
- Re: Multiseq in text mode (Mon Feb 07 2011 - 23:33:00 CST)
- Multiseq in text mode (Mon Feb 07 2011 - 13:11:57 CST)
- Re: .xyz to .dcd using catdcd (Mon Apr 16 2007 - 21:31:42 CDT)
- Re: .xyz to .dcd using catdcd (Mon Apr 16 2007 - 14:34:47 CDT)
- .xyz to .dcd using catdcd (Fri Apr 13 2007 - 16:08:51 CDT)
- electric field (Sat Sep 02 2006 - 20:21:23 CDT)
- RE: how to write out the coordinates of center of mass of a particularresidue (Thu Jun 02 2005 - 10:12:00 CDT)
- RE: Rama plot (Tue May 10 2005 - 11:31:27 CDT)
- Ramachandran plot (Mon May 09 2005 - 18:00:46 CDT)
- RE: Rama plot (Mon May 09 2005 - 18:34:48 CDT)
- Rama plot (Mon May 09 2005 - 18:07:40 CDT)
- Re: SMD (Mon Feb 07 2005 - 13:57:23 CST)
- SMD (Mon Feb 07 2005 - 10:28:24 CST)
- solvent mixture (Wed Feb 02 2005 - 20:44:48 CST)
- angle between two vectors (Tue Jan 11 2005 - 18:56:54 CST)
- Label using TCL (Mon Nov 22 2004 - 18:43:28 CST)
- density profile (Tue Mar 16 2004 - 14:57:36 CST)
- save psf (Thu Feb 19 2004 - 16:44:16 CST)
eladp_at_hplus.tau.ac.il
- Calculating minimal distance between two groups (Mon Nov 14 2005 - 10:02:59 CST)
elena ermakova
- Dynamical Network Analysis programs gncommunities and subopt (Sat Apr 14 2012 - 01:40:33 CDT)
ELENA S SLOBOUNOV
- VMD on LINUX with CAVELib (Fri Apr 28 2006 - 16:25:13 CDT)
Elena Slobounov
- VMD + linux (64) + Flock of Birds (Fri Jul 15 2005 - 16:06:24 CDT)
Elias Ahadi
- Extra lines shown in trajectories in VMD (Wed Jul 21 2010 - 12:26:08 CDT)
- bond connectivity not displayed in VMD (Wed Oct 21 2009 - 11:36:39 CDT)
- model protein chain not displayed properly (Mon Sep 28 2009 - 13:38:32 CDT)
Elif Ozkirimli
- Re: changing the representation of all loaded molecules (Wed May 26 2004 - 13:32:28 CDT)
- Re: changing the representation of all loaded molecules (Thu May 20 2004 - 08:55:25 CDT)
- changing the representation of all loaded molecules (Wed May 19 2004 - 14:32:02 CDT)
Elijah Roberts
- Re: Multiseq error: 'can't read 'SequenceIDtoMolID(122)': no such element in array' (Wed Oct 22 2008 - 22:24:11 CDT)
- Re: Pairwise RMSD (Tue Oct 07 2008 - 15:13:16 CDT)
- Re: Multiseq refusing to load a structure due to taxonomy problem (Tue Jul 29 2008 - 13:17:04 CDT)
- Re: problem with superimposing two proteins (Thu Jan 10 2008 - 17:09:37 CST)
- Re: custom db in Multiseq (Tue May 22 2007 - 16:01:53 CDT)
- Re: Sequences and BLAST searching (Wed Nov 15 2006 - 12:05:57 CST)
- Re: VMD1.8.5 : multiseq db (Tue Aug 29 2006 - 12:20:04 CDT)
- Re: Réf. : Re: vmd-l : VMD1.8.5 : multiseq db (Tue Aug 29 2006 - 10:45:09 CDT)
- Re: vmd-l : VMD1.8.5 : multiseq db (Tue Aug 29 2006 - 09:08:40 CDT)
- Re: Loading structures into sequence alignment extension? (Mon Feb 13 2006 - 14:03:28 CST)
Eliud Oloo
- analysis script causes vmd to crash (Thu Feb 02 2006 - 19:26:35 CST)
Eliza Wray
- Your Val1um 0rder #799563 (Fri Aug 31 2007 - 10:02:23 CDT)
Elizabeth K. White
- problem with RMSD script (Wed Aug 15 2001 - 15:03:11 CDT)
Emanuel Vamvakopoulos
- about graphics accelaration (Fri Apr 12 2002 - 11:36:49 CDT)
Emeline Leproult
- Link between the electrostatic potential on the surface and the grid.dx generated by APBS (Mon Feb 02 2009 - 09:57:02 CST)
Emilia Wu
- superposition of two complex according to the same inhibitor (Mon Oct 22 2007 - 21:42:59 CDT)
- the representation of within 10 angstrom of a specific point (Sun Oct 07 2007 - 22:01:08 CDT)
Emiliano Ippoliti
- Re: measure gofr script (Sat Apr 28 2012 - 11:17:00 CDT)
- measure gofr script (Sat Apr 28 2012 - 08:51:58 CDT)
- Re: Stereoscopic visualization (Tue May 11 2010 - 02:37:15 CDT)
- Re: Stereoscopic visualization (Sun May 09 2010 - 13:56:59 CDT)
- Stereoscopic visualization (Sun May 09 2010 - 10:58:46 CDT)
emiliawu_at_dicp.ac.cn
- count CLA number from different frames (Sat Mar 12 2011 - 07:16:32 CST)
- abuot avpos (Thu Feb 24 2011 - 00:57:00 CST)
Emily Chen
- Re: OpenGL Display slow/freeze (Tue Jun 22 2010 - 13:51:37 CDT)
- Re: OpenGL Display slow/freeze (Tue Jun 22 2010 - 13:53:30 CDT)
- AutoPSF errors (Mon Jun 21 2010 - 14:06:19 CDT)
Emily Moore
- Running without interface (Thu Sep 04 2008 - 11:29:02 CDT)
- Re: TXT program editor (Thu Aug 28 2008 - 18:13:01 CDT)
- Re: TXT program editor (Thu Aug 28 2008 - 17:09:42 CDT)
- Re: Trouble updating frames in script (Tue Aug 19 2008 - 14:23:29 CDT)
- Trouble updating frames in script (Tue Aug 19 2008 - 12:21:11 CDT)
Emmanouil_Bambakopoulos
- about dynamical change color of atoms (Thu Apr 01 2004 - 09:35:40 CST)
Emmanuel Baribefe Naziga
- Re: trajectory of water within 5 A of protein (Tue May 10 2011 - 10:26:52 CDT)
Emmanuel Levy
- Re: snapshot not compatible with -dispdev text? (Mon Mar 10 2008 - 18:19:49 CDT)
- snapshot not compatible with -dispdev text? (Mon Mar 10 2008 - 17:08:02 CDT)
- Re: Automatically zoom so that the protein fill the display (Mon Mar 10 2008 - 15:03:40 CDT)
- Re: Automatically zoom so that the protein fill the display (Mon Mar 10 2008 - 14:28:30 CDT)
- Re: Automatically zoom so that the protein fill the display (Mon Mar 10 2008 - 14:30:51 CDT)
- Automatically zoom so that the protein fill the display (Mon Mar 10 2008 - 13:21:46 CDT)
- Electron microscopy surface with VMD? (Thu Jul 12 2007 - 16:37:18 CDT)
- Exporting a protein surface into a mesh (plain text file) (Mon Oct 09 2006 - 11:59:57 CDT)
Emmanuel Vamvakopoulos
- SGI problem! (Fri Oct 29 1999 - 07:57:27 CDT)
- how is dcd trajectory format ! (Fri Aug 27 1999 - 14:18:04 CDT)
- about shape order parameter (Sat May 24 2003 - 07:12:07 CDT)
emmanuel.levy1_at_free.fr
- Animate the "beta" field (Sat May 29 2004 - 14:05:16 CDT)
emra Heshmati
- H- bond (Wed Oct 17 2007 - 12:16:47 CDT)
- electrostatic energy (Wed Aug 15 2007 - 08:20:16 CDT)
- surface area (Wed Feb 07 2007 - 22:40:56 CST)
Engelman, Joshua
- Re: Movie Plugin (Mon Apr 23 2012 - 16:32:01 CDT)
- Re: Movie Plugin (Sat Apr 21 2012 - 16:50:59 CDT)
- Movie Plugin (Sat Apr 21 2012 - 15:54:54 CDT)
- HOOMD problems (Fri Apr 20 2012 - 15:35:52 CDT)
Enrico Santori
- Re: Virtual Reality and VMD (Tue Dec 14 2004 - 09:32:30 CST)
- Virtual Reality and VMD (Tue Dec 14 2004 - 02:31:00 CST)
Enzo Vitale
- adding new atoms to a molecule from a script (Thu Oct 05 2006 - 05:20:55 CDT)
- different number of atoms in different frames of a trajectory (Mon Sep 04 2006 - 11:09:33 CDT)
- search path and naming conventions for custom TCL scripts (Wed May 03 2006 - 09:13:42 CDT)
- coordinates of an atom (Tue May 02 2006 - 09:39:10 CDT)
- hiding and renaming of graphical objects (Fri Apr 28 2006 - 11:54:30 CDT)
EPF (Esben Peter Friis)
- RE: How to read i8(64 bit) .crd file with 32 bit VMD (Sun May 23 2004 - 15:31:55 CDT)
- RE: NVIDIA Quadro - CrystalEyes - Linux (Tue Sep 30 2003 - 08:45:41 CDT)
- RE: NVIDIA Quadro - CrystalEyes - Linux (Tue Sep 30 2003 - 09:27:56 CDT)
EPF $Esben Peter Friis$
- RE: namd-l: Aligning structures (Fri Mar 10 2006 - 01:34:40 CST)
- RE: VMD on Linux Fedora Core 2 (Wed Oct 13 2004 - 10:20:43 CDT)
Epiphaniou, Nicholas
- Colouring Atoms according to the centro-symmetric parameter (Thu Mar 01 2007 - 12:59:00 CST)
- Error when compiling Plugins from source code (Thu Jan 25 2007 - 04:57:09 CST)
Eric Brown
- Python, Numeric, and Mac OS X problem (Mon Mar 14 2005 - 06:14:29 CST)
- Python, Numeric, and Mac OS X problem (Mon Mar 14 2005 - 05:18:08 CST)
Eric Germaneau
- Not calculate bonds by default. (Fri Mar 11 2011 - 07:12:04 CST)
Eric Grzelak
- How to set the default mol style as VDW? (Wed Sep 01 2010 - 15:07:49 CDT)
Eric H. Lee
- Re: how to label the distances using tk console mode (Tue Dec 15 2009 - 20:54:17 CST)
- Re: how to label the distances using tk console mode (Tue Dec 15 2009 - 20:09:58 CST)
- Re: colour residues (Mon Oct 12 2009 - 21:31:18 CDT)
- Re: colour residues (Mon Oct 12 2009 - 18:26:11 CDT)
- Re: catdcd (Mon Oct 12 2009 - 10:05:09 CDT)
- Re: NAMD tutorial for Windows problem reading pgn file from vmd tkconsole (Fri Aug 21 2009 - 17:13:21 CDT)
- Re: NAMD tutorial for Windows problem reading pgn file from vmd tkconsole (Fri Aug 21 2009 - 16:40:52 CDT)
- Re: need convert when using VMD to make a movie under Mac (Mon Jul 20 2009 - 18:34:53 CDT)
- Re: namd-l: molecule jumps from one site to the other? (Mon Jul 13 2009 - 21:33:42 CDT)
- Re: Transparency settings (Wed Jun 10 2009 - 09:23:55 CDT)
- Re: atom selection (Sun Jun 07 2009 - 23:46:39 CDT)
- Re: NAMDEnergy (Sun Jun 07 2009 - 15:37:30 CDT)
- Re: BMP snapshot (Thu May 07 2009 - 14:26:24 CDT)
- Re: Graphical representation (Sun Mar 29 2009 - 14:22:18 CDT)
- Re: how to make a mivie by VMD (Wed Mar 25 2009 - 20:37:16 CDT)
- Re: how to make a mivie by VMD (Wed Mar 25 2009 - 17:44:43 CDT)
- Re: odd render problems with Vista (Sun Jan 11 2009 - 20:53:13 CST)
- Re: fasta2pdb (Mon Nov 10 2008 - 15:16:00 CST)
- Re: Problem in text mode (Thu Oct 16 2008 - 01:43:01 CDT)
- Re: VMD crasch (Thu Jul 31 2008 - 16:11:33 CDT)
- Re: Maximum velocities (Thu Jul 03 2008 - 16:17:54 CDT)
- Re: rmsd per residue (Mon Jun 30 2008 - 14:42:18 CDT)
- Re: displaying hydrogen bonds when hydrogens are not available (Thu Jun 19 2008 - 09:46:51 CDT)
Eric Hajjar
- Re: Display the electrostatic character (delphimap) on the structure file (Wed May 24 2006 - 02:48:31 CDT)
- Re: Display the electrostatic character (delphimap) on the structure file (Tue May 16 2006 - 01:51:14 CDT)
- Re: Display the electrostatic character (delphimap) on the structure file (Thu May 11 2006 - 01:18:54 CDT)
- Display the electrostatic character (delphimap) on the structure file (Tue May 09 2006 - 05:18:37 CDT)
- VMD compatibility with graphics card (Thu Dec 02 2004 - 03:27:08 CST)
eric hu
- movie from amber traj (Tue Jan 14 2003 - 12:46:38 CST)
- rotate a molecule (Thu Dec 05 2002 - 17:09:28 CST)
- xyz movie (Thu Oct 31 2002 - 17:58:15 CST)
- Re: molden xyz movie (Thu Oct 10 2002 - 20:27:11 CDT)
- molden xyz movie (Thu Oct 10 2002 - 17:57:13 CDT)
- Re: vmd on mac 9.1 (Wed Jul 17 2002 - 11:00:35 CDT)
- vmd on mac 9.1 (Tue Jul 16 2002 - 13:39:14 CDT)
- rending softwares for win98 (Thu Nov 16 2000 - 17:26:20 CST)
- Re: a few questions about VMD (Fri Sep 22 2000 - 16:31:06 CDT)
- a few questions about VMD (Wed Sep 20 2000 - 17:49:07 CDT)
Eric Johnson
- Re: visualizing CCP4 maps in VMD (Mon Nov 07 2005 - 14:51:57 CST)
Eric Peterson
- Tk console issues (Wed Jan 17 2007 - 15:48:58 CST)
- Re: VMD scene information (Wed Jan 10 2007 - 17:19:39 CST)
- VMD scene information (Wed Jan 10 2007 - 12:23:29 CST)
- Solvate and VMD on OS X (Fri Nov 12 2004 - 20:20:28 CST)
Erica Smith
- DCD unit cell data (Wed Oct 15 2003 - 15:45:51 CDT)
Erik Abrahamsson
- Re: Elliptic molecules (Tue Jun 30 2009 - 18:25:41 CDT)
Erik Nordgren
- Re: Understand a script (Wed Jul 27 2011 - 14:39:02 CDT)
- Re: loading saved state from command line (Mon Jul 25 2011 - 19:28:30 CDT)
- loading saved state from command line (Mon Jul 25 2011 - 19:12:03 CDT)
- Re: why atom positions are reset after readpsf, coordpdb commands? (Thu Dec 16 2010 - 13:25:22 CST)
- subtlety with PSFGEN - angle/dihedral regeneration (Wed Nov 24 2010 - 20:55:06 CST)
erik vogan
- Re: Pretty Picture (Wed Jun 21 2000 - 22:24:30 CDT)
Erin L.
- .xsf triclinic cell contents (Thu Nov 18 2010 - 14:23:06 CST)
Erin Ziegler
- One of a kind replicas (Wed Apr 23 2008 - 21:53:24 CDT)
Erkan Tuzel
- .xyz file, namelist index too large error (Wed Jun 06 2007 - 19:39:48 CDT)
Ernesto E. Di Iorio
- Re: Conversion of trajectory files (Wed Nov 10 2004 - 04:23:19 CST)
Ernesto Moreno
- Re: viewing CHARMM trajectory (Tue Sep 12 2000 - 09:37:47 CDT)
Eros Albertazzi
- vmd on Ubuntu: tcl howto (Wed May 23 2012 - 05:37:57 CDT)
Errol Lusk
- Tag Heuer replicas better than originals (Sun Apr 20 2008 - 18:30:56 CDT)
Esam Tolba
- Re: how to change working directory of VMD? (Tue Jul 19 2011 - 18:16:29 CDT)
- how to change working directory of VMD? (Mon Jul 18 2011 - 14:02:17 CDT)
- How to change the VMD working Directory (Thu Jul 14 2011 - 09:10:17 CDT)
- Re: error in movie generator (Tue May 17 2011 - 03:57:06 CDT)
- error in movie generator (Mon May 16 2011 - 10:01:27 CDT)
Esben A. Gad
- Re: Re: PSF works in NAMD but not in VMD (Wed Jun 25 2008 - 06:42:53 CDT)
- Re: Re: PSF works in NAMD but not in VMD (Tue Jun 24 2008 - 03:08:07 CDT)
- Re: Re: PSF works in NAMD but not in VMD (Mon Jun 23 2008 - 07:20:08 CDT)
- Re: PSF works in NAMD but not in VMD (Fri Jun 20 2008 - 06:05:22 CDT)
- PSF works in NAMD but not in VMD (Wed Jun 18 2008 - 03:17:04 CDT)
Esteban Gabriel Vega Hissi
- Re: visualizing trr file (Fri Mar 26 2010 - 16:28:57 CDT)
- Re: positioning of a compound (Wed Aug 12 2009 - 16:07:37 CDT)
Estela Gibbs
- Spring quality watches offer (Tue Jun 10 2008 - 18:50:16 CDT)
Esther Brugger
- Tinker trajectory file (Mon Apr 16 2007 - 16:47:00 CDT)
- read the pdb file using VMD (Mon Mar 05 2007 - 17:00:36 CST)
- H-Bond in VMD (Thu Feb 08 2007 - 10:48:38 CST)
- H-Bond display in VMD (Tue Feb 06 2007 - 12:41:47 CST)
- Re: problem for saving as jpg file (Wed Nov 01 2006 - 10:51:27 CST)
- problem for saving as jpg file (Wed Nov 01 2006 - 09:51:17 CST)
- Re: installation problem (Wed Nov 01 2006 - 08:59:39 CST)
- installation problem (Tue Oct 31 2006 - 17:59:07 CST)
Euclid Sun
- VMD has problem displaying glsl rendermode (Mon Apr 12 2010 - 09:04:29 CDT)
Eugen Leitl
- Re: 3Dconnexion SpaceTraveler works (Fri Jul 14 2006 - 03:43:21 CDT)
- 3Dconnexion SpaceTraveler works (Wed Jul 05 2006 - 08:21:00 CDT)
- 3Dconnexion SpaceTraveler works (Wed Jul 05 2006 - 07:54:46 CDT)
- Re: Solutions for stereo - is CRT technology dead? (Mon May 22 2006 - 07:03:57 CDT)
- Re: latest beta nVidia driver for Windows looks good so far... (Tue Apr 04 2006 - 02:04:43 CDT)
- Re: babel compilation error (Fri Dec 09 2005 - 11:30:24 CST)
- Re: spaceballs, etc. (Fri Dec 09 2005 - 03:26:35 CST)
- spaceballs, etc. (Thu Dec 08 2005 - 16:33:53 CST)
- new macs out (Wed Oct 19 2005 - 15:10:22 CDT)
- Re: problem with coloring surface by electrostatic potential (Wed Sep 21 2005 - 03:50:47 CDT)
- Re: a question about get the coordinates in vector form (Fri Apr 15 2005 - 15:45:24 CDT)
- New Sharp 3D Notebook Available with Linux (Tue Mar 22 2005 - 05:35:19 CST)
- which nForce to use? (Tue Jan 25 2005 - 03:23:18 CST)
- Re: Virtual Reality and VMD (Tue Dec 14 2004 - 10:41:33 CST)
- Re: [linux-elitists] ATI Radeon support (fwd from deejoe@raccoon.com) (Tue Dec 14 2004 - 03:33:02 CST)
- Re: VMD on Linux Fedora Core 2 (Fri Oct 15 2004 - 01:24:29 CDT)
- Re: VMD on Linux Fedora Core 2 (Wed Oct 13 2004 - 11:28:18 CDT)
- Re: [MMTK] Visualization to an image file (fwd from hinsen@cnrs-orleans.fr) (Mon Jul 12 2004 - 08:36:58 CDT)
- Re: (Wed Nov 19 2003 - 04:13:28 CST)
- Re: Highlighting nearest atom ? (wrt to a tool) (Wed Nov 12 2003 - 04:22:51 CST)
- Re: Highlighting nearest atom ? (wrt to a tool) (fwd from eugen@leitl.org) (Wed Nov 12 2003 - 04:51:06 CST)
- Re: [PyMOL] 3D on linux (fwd) (Thu Jan 30 2003 - 09:40:15 CST)
- Re: conect2psf (Wed Jul 24 2002 - 04:14:53 CDT)
Eugene Leitl
- Re: Pegasus Technologies FreeD drivers? (Wed Dec 08 1999 - 15:05:42 CST)
- Pegasus Technologies FreeD drivers? (Fri Nov 26 1999 - 19:39:54 CST)
- membrane modeling (Sat Mar 25 2000 - 19:03:56 CST)
- NVIDIA, SGI and VA Linux To Bring Graphics Standard To Desktop Linux Market (Wed Jan 19 2000 - 19:21:19 CST)
- Stereo on SGI Indigo2? - Linux? (Sat Jan 15 2000 - 19:35:26 CST)
- 6DOF controllers (Sat Jan 08 2000 - 20:42:01 CST)
Eugene Valkov
- Calculating and drawing symmetry axes (Thu Dec 02 2004 - 13:37:14 CST)
Eunice Ramirez Melendez
- (no subject) (Mon Dec 13 2004 - 19:20:55 CST)
Evan Thompson
- MacOSX and the solvate package (Fri Oct 11 2002 - 20:02:59 CDT)
Ezequiel Quintana Morales
- Strange behaviour of MSMS (Tue Oct 16 2007 - 07:33:07 CDT)
Fabian Boes
- AMBER9 netcdf trajectory loading (Fri Jul 21 2006 - 08:00:30 CDT)
Fabio Trovato
- Re: Problem with the script mono2poly.tcl (Sat Mar 14 2009 - 04:56:17 CDT)
- Problem with the script mono2poly.tcl (Fri Mar 13 2009 - 11:46:44 CDT)
fabri
- vmd 1.8.3 on my mac (Sat Feb 19 2005 - 03:21:14 CST)
fabrizio cleri
- Re: Apple hardware configuration (Sat Feb 26 2005 - 02:32:42 CST)
- Apple hardware configuration (Fri Feb 25 2005 - 05:29:24 CST)
Fahimeh Baftizadeh
- Re: volumetric trajectory (Fri Jan 14 2011 - 12:26:40 CST)
- Re: volumetric trajectory (Mon Jan 10 2011 - 15:29:46 CST)
- volumetric trajectory (Mon Jan 10 2011 - 04:50:46 CST)
Falgun Shah
- Re: regarding draw_arrow.tcl (Fri Mar 13 2009 - 10:40:47 CDT)
- Re: regarding draw_arrow.tcl (Fri Mar 13 2009 - 08:56:31 CDT)
- regarding draw_arrow.tcl (Mon Mar 09 2009 - 17:55:58 CDT)
- motion correlation map (Sun Mar 08 2009 - 12:41:18 CDT)
- use of spring tcl script (Thu Mar 05 2009 - 20:49:30 CST)
- Re: images for publication (Wed Mar 04 2009 - 00:20:59 CST)
- Re: images for publication (Wed Mar 04 2009 - 00:06:27 CST)
- displaying residues within 5 A of ligand in vmd (Tue Mar 03 2009 - 09:53:29 CST)
- images for publication (Sun Mar 01 2009 - 15:23:12 CST)
- paratool: gaussian output error (Sat Feb 28 2009 - 17:15:25 CST)
- charm27 forcefield_topology (Wed Feb 25 2009 - 11:02:02 CST)
- about measuring volume of the binding site (Sat Feb 14 2009 - 15:58:14 CST)
- selecting set of residue (Mon Feb 02 2009 - 14:44:45 CST)
Fan,Huajun
- Problem installation on RedHat (Mon Feb 20 2006 - 21:18:32 CST)
fariba taghavi
- Re: diffusion coefficient plug-in in VMD (Tue May 08 2012 - 09:14:54 CDT)
- diffusion coefficient plug-in in VMD (Tue May 08 2012 - 07:06:31 CDT)
- 3D density in the specific part of the simulation box (Tue May 01 2012 - 00:48:35 CDT)
Fatemesadat Emami
- libGLU.so missing? (Fri May 18 2012 - 18:55:21 CDT)
- change residue colors? (Fri Sep 10 2010 - 14:37:23 CDT)
- Re: adding atomselections? (Sat May 08 2010 - 22:15:43 CDT)
- Re: adding atomselections? (Sat May 08 2010 - 19:42:24 CDT)
- adding atomselections? (Sat May 08 2010 - 18:28:48 CDT)
- selecting from different molecules simultaneously (Wed May 05 2010 - 18:35:26 CDT)
- Tachyon? (Fri Apr 30 2010 - 11:41:25 CDT)
- Load and change representation? (Sat Apr 17 2010 - 16:51:53 CDT)
- Load and change representation? (Fri Apr 16 2010 - 23:37:32 CDT)
- Re: Add a surface to a pdb file (Mon Mar 08 2010 - 13:47:43 CST)
- Re: Add a surface to a pdb file (Mon Mar 08 2010 - 10:05:36 CST)
- Re: Add a surface to a pdb file (Mon Mar 08 2010 - 09:57:02 CST)
- Add a surface to a pdb file (Mon Mar 08 2010 - 08:59:14 CST)
Federico Filomia
- Re: Nvidia quadro Fx1300 problem (Mon Aug 01 2011 - 02:25:42 CDT)
- Nvidia quadro Fx1300 problem (Fri Jul 29 2011 - 03:55:25 CDT)
Fei Chen
- Re: What's the main reason of the structure or function of a protein? (Wed Mar 05 2008 - 19:48:49 CST)
- What's the main reason of the structure or function of a protein? (Wed Mar 05 2008 - 07:53:18 CST)
Fei Xu
- create new colors (Thu Mar 07 2002 - 10:49:25 CST)
- selection and coloring (Mon Mar 04 2002 - 10:06:35 CST)
- coloring method (Thu Feb 28 2002 - 15:44:11 CST)
- AtomSel and Graphics (Fri Feb 22 2002 - 11:26:51 CST)
- python script of atomsel expression (Tue Feb 19 2002 - 09:42:25 CST)
Felix Frolow
- Re: VMD 1.9.1 beta 2 to be posted tonight... (Thu Jan 26 2012 - 06:32:50 CST)
- RE: POV-Ray (Wed Nov 12 2003 - 01:57:42 CST)
Felix Rodrigues Gulias
- Question about geometrical figures (Fri Feb 01 2008 - 11:03:42 CST)
Ferdinand Benton
- No prescr1ption? No problem! (Sun Aug 19 2007 - 10:50:20 CDT)
Fernanda S.
- Re: installation (Sun Feb 15 2009 - 13:32:20 CST)
- Re: installation (Sun Feb 15 2009 - 08:05:10 CST)
- Re: installation (Sat Feb 14 2009 - 17:18:57 CST)
- installation (Thu Feb 12 2009 - 13:08:19 CST)
Fernandez-Alonso, F (Felix)
- VMD on Linux Fedora Core 2 (Wed Oct 13 2004 - 06:53:05 CDT)
- accessing VMD help (Fri Oct 31 2003 - 07:42:15 CST)
ffavela_at_fis.cinvestav.mx
- membrane builder (Tue May 13 2008 - 17:30:57 CDT)
Filip Persson
- append glow lights to a VMD/Tachyon scene (Fri Feb 17 2012 - 03:11:53 CST)
- draw intersection volume between two spheres (Wed Sep 07 2011 - 08:30:33 CDT)
- define water cavity using atom selection in graphical representations window (Tue Sep 06 2011 - 03:08:20 CDT)
- Novint Falcon in VMD - help with setup (Wed Jul 20 2011 - 05:12:44 CDT)
- VMD scripting: Perform PBCwrap+fitframes on several dcd files (Fri Jul 01 2011 - 08:03:26 CDT)
Filippo Federici
- Re: CUDA issues (Fri Mar 05 2010 - 01:38:40 CST)
- Re: CUDA issues (Thu Mar 04 2010 - 10:29:44 CST)
- CUDA issues (Thu Mar 04 2010 - 01:18:14 CST)
Filippo Federici Canova
- Re: CUDA issues (Thu Mar 04 2010 - 11:54:09 CST)
Fiona Reid
- Re: Compiling CATDCD and VMD plugins on AIX5.2 (Thu Oct 20 2005 - 10:44:32 CDT)
- Compiling CATDCD and VMD plugins on AIX5.2 (Thu Oct 20 2005 - 04:13:27 CDT)
flavio seixas
- Re: Protein-ligand contact (Mon Apr 30 2012 - 18:29:17 CDT)
- Re: Anaglyph stereo with other colors (Sat Apr 21 2012 - 13:36:01 CDT)
- Re: PSFGEN and Reading Bonds from PDB Files (Sun Feb 05 2012 - 18:24:40 CST)
- Re: problem generating NAD (Fri Dec 23 2011 - 17:42:12 CST)
- Protein-ligand contact (Tue Dec 20 2011 - 08:10:15 CST)
- Re: topology and parameter files for H2 and O2 (Wed Dec 07 2011 - 13:49:51 CST)
- average structure script (Fri Nov 25 2011 - 09:52:40 CST)
- How to save Automatic psf builder script (Thu Nov 24 2011 - 12:03:15 CST)
Fletcher Quick
- porsche design is your style; (Thu Jun 18 2009 - 14:18:17 CDT)
floquet_at_icsn.cnrs-gif.fr
- MSMS calculations (Thu Aug 25 2005 - 03:52:29 CDT)
- PME values (Tue Aug 23 2005 - 09:38:16 CDT)
- Plugins update (Tue Aug 23 2005 - 04:00:39 CDT)
Florentina Tofoleanu
- Re: water molecules around proteins (Thu Mar 11 2010 - 14:54:57 CST)
- Re: water molecules around proteins (Wed Mar 10 2010 - 16:27:37 CST)
- Re: Secondary structure with Timeline (Tue Dec 01 2009 - 12:18:05 CST)
- Secondary structure with Timeline (Thu Nov 26 2009 - 06:19:15 CST)
- Hydrogen bonds with different evaluations (Thu Nov 26 2009 - 05:16:34 CST)
- VMD Periodic cells (Wed Aug 12 2009 - 07:03:53 CDT)
- Distance between COM for 2 chains for each frame of trajectory (Wed May 20 2009 - 11:34:18 CDT)
Florian Barth
- Re: coloring of trajectory (Thu Mar 11 2004 - 11:56:38 CST)
- coloring of trajectory (Wed Mar 10 2004 - 07:10:27 CST)
Florian Haberl
- Re: pdb - generation (Tue Mar 21 2006 - 09:06:57 CST)
- installing problem python 2.2.2 for ied on amd64 (Thu Feb 02 2006 - 08:50:36 CST)
- Re: Python, Numeric, and Mac OS X problem (Mon Mar 14 2005 - 06:47:10 CST)
- Re: openGL error (Fri Feb 04 2005 - 10:15:08 CST)
- Re: parm7 plugin (Wed Jan 26 2005 - 10:27:24 CST)
- Re: PBS script for LINUX cluster (Wed Jan 19 2005 - 02:56:39 CST)
- Python and numpy (Tue Jan 11 2005 - 07:31:37 CST)
- VMD and windows (Mon Jan 10 2005 - 01:37:40 CST)
- Fwd: Re: putting Lipid layers around a protein (Tue Nov 16 2004 - 03:32:41 CST)
Florian Mrugalla
- Re: Problem with psfgen (Tue Aug 23 2011 - 10:14:24 CDT)
- Problem with psfgen (Tue Aug 23 2011 - 07:41:02 CDT)
FOK LO MING
- convert pdb to psf (Tue Sep 30 2003 - 03:54:34 CDT)
Forest Jefferson
- tag heuer rep watch for you; (Sat Jun 20 2009 - 05:44:49 CDT)
fouchni_at_uni-osnabrueck.de
- Changing a structure of macromolecule with VMD (Sun Feb 24 2008 - 08:38:44 CST)
- Residue replacement question] (Fri Feb 22 2008 - 04:20:04 CST)
- Residue replacement question (Wed Feb 20 2008 - 04:15:33 CST)
Fran Villa
- Your C0deine 0rder #247424 (Fri Mar 06 2009 - 19:51:11 CST)
Franca Fraternali
- Re: gromos96 files (Thu Mar 11 2004 - 03:47:43 CST)
- gromos96 files (Wed Mar 10 2004 - 04:55:47 CST)
Francesca Mocci
- Re: problem in visualizing gaussian log file (Thu Sep 14 2006 - 09:26:43 CDT)
- problem in visualizing gaussian log file (Thu Sep 14 2006 - 05:41:51 CDT)
- Re: x-plor map file and readedm (Wed Nov 12 2003 - 05:47:26 CST)
- x-plor map file and readedm (Tue Nov 11 2003 - 09:11:11 CST)
Francesca Ricci-Tam
- How to remove hydrogens from a pdb file? (Thu May 06 2010 - 23:17:19 CDT)
Francesco Gervasio
- Drawing electron density surfaces (from cube files) (Fri Jan 25 2002 - 07:01:41 CST)
Francesco Iori
- PME units (Tue Oct 03 2006 - 11:36:54 CDT)
- catdcd (Wed Jul 13 2005 - 04:05:40 CDT)
francesco oteri
- Re: helical content script (Tue May 01 2012 - 07:09:03 CDT)
- Re: Hydrophobic mismatch script (Mon Apr 23 2012 - 05:17:13 CDT)
- Re: RMSD vs RMSF (Thu Oct 06 2011 - 15:37:05 CDT)
- xtc plugin writing ability (Fri Aug 05 2011 - 07:39:59 CDT)
- Re: Protein cavities (Sun May 29 2011 - 07:09:59 CDT)
- psf and top (Thu Mar 10 2011 - 09:10:05 CST)
- feature request (Wed Feb 23 2011 - 15:37:34 CST)
- latest vmd (Sat Feb 12 2011 - 18:23:52 CST)
- Truncated octahedron Box (Wed Jan 12 2011 - 04:43:17 CST)
- Re: selection of amino acids with certain distance each others (Sun Dec 19 2010 - 14:39:53 CST)
- Re: automatic PSF builder (Sun Dec 12 2010 - 10:00:52 CST)
- namdenergy problem (Wed Dec 01 2010 - 06:23:23 CST)
Francesco Pietra
- FFTK plugin: in which order should the components be run? (Mon May 21 2012 - 04:20:58 CDT)
- Add-H for crystallization water only (Wed May 09 2012 - 15:08:09 CDT)
- Re: namd-l: psfgen tyrosine anion-Fe bond (Sun Apr 01 2012 - 12:14:27 CDT)
- Re: namd-l: psfgen tyrosine anion-Fe bond (Sun Apr 01 2012 - 12:03:17 CDT)
- psfgen tyrosine anion-Fe bond (Sun Apr 01 2012 - 09:53:13 CDT)
- autopsf: can't read "logfilename" (Sat Mar 24 2012 - 11:46:15 CDT)
- Fwd: Re: [AMBER] Viewing with VMD bonds set by the "bond" command (Fri Mar 09 2012 - 01:39:17 CST)
- Re: [AMBER] Viewing with VMD bonds set by the "bond" command (Thu Mar 08 2012 - 12:27:58 CST)
- Re: [AMBER] Viewing with VMD bonds set by the "bond" command (Thu Mar 08 2012 - 03:48:48 CST)
- Re: Re: About FFTP with transition metal complexes (Wed Feb 29 2012 - 05:52:03 CST)
- About FFTP with transition metal complexes (Sat Feb 18 2012 - 00:23:01 CST)
- Re: About the syntax in Autopsf - Add Patch for PRES PLIG (Sun Oct 30 2011 - 10:34:43 CDT)
- About the syntax in Autopsf - Add Patch for PRES PLIG (Sun Oct 30 2011 - 03:28:27 CDT)
- Epsilon, Rmin for copper ions (Sat Sep 24 2011 - 03:55:34 CDT)
- Fwd: Copper ions paratool (Fri Sep 23 2011 - 10:12:04 CDT)
- Fwd: Saved project and paratool (Fri Sep 23 2011 - 06:00:05 CDT)
- stream files and paratool (Fri Sep 23 2011 - 03:10:52 CDT)
- fonts for paratool (Sun Sep 18 2011 - 09:11:38 CDT)
- Problems running VMD-CUDA with GNU-Linux (Tue Aug 02 2011 - 16:52:01 CDT)
- SOLVED: Failure to run namd-cuda with gtx-470 (Fri Jul 22 2011 - 09:56:34 CDT)
- Computer hangs on trying to launch VMD CUDA (Mon Jul 04 2011 - 02:19:02 CDT)
- Re: Re: Fwd: "cuda error cudastreamcreate", (Fri Jun 17 2011 - 02:36:49 CDT)
- Re: Fwd: "cuda error cudastreamcreate", (Fri Jun 17 2011 - 00:50:05 CDT)
- Fwd: molefacture "force tetrahedral" failure: SOLVED with chimera-vmd (Wed May 04 2011 - 02:45:21 CDT)
- molefacture "force tetrahedral" failure (Wed May 04 2011 - 01:33:01 CDT)
- Fwd: (my) problems using molefacture dihedral (Sun Apr 03 2011 - 09:14:44 CDT)
- Fwd: (my) problems using molefacture dihedral (Sun Apr 03 2011 - 08:49:53 CDT)
- (my) problems using molefacture dihedral (Sat Apr 02 2011 - 15:36:21 CDT)
- Re: Fwd: charmmgen to autopsf (Tue Mar 22 2011 - 13:38:37 CDT)
- Fwd: charmmgen to autopsf (Tue Mar 22 2011 - 11:03:05 CDT)
- Re: charmmgen to autopsf (Tue Mar 22 2011 - 05:32:21 CDT)
- Re: charmmgen to autopsf (Mon Mar 21 2011 - 11:50:13 CDT)
- Fwd: charmmgen to autopsf (Mon Mar 21 2011 - 07:20:00 CDT)
- charmmgen to autopsf (Mon Mar 21 2011 - 05:12:05 CDT)
- Re: segid & chain id (Thu Mar 17 2011 - 11:05:17 CDT)
- Fwd: .pdbqt file type (Thu Mar 17 2011 - 05:16:04 CDT)
- segid & chain id (Thu Mar 17 2011 - 02:27:23 CDT)
- Re: .pdbqt file type (Thu Mar 17 2011 - 02:38:19 CDT)
- .pdbqt file type (Wed Mar 16 2011 - 12:15:51 CDT)
- Fwd: Re: namd-l: hBond colvars and patching (Tue Mar 08 2011 - 00:34:36 CST)
- Re: namd-l: hBond colvars and patching (Mon Mar 07 2011 - 00:12:54 CST)
- hBond colvars and patching (Sun Mar 06 2011 - 14:05:47 CST)
- Fwd: namd-l: hBond component in colvars and patching (Sun Mar 06 2011 - 02:36:10 CST)
- hBond component in colvars and patching (Sat Mar 05 2011 - 14:38:45 CST)
- Fwd: autopsf-patches C++ error 'expected integer but got "" ""' SOLVED, MY FAULT (Fri Feb 25 2011 - 07:59:56 CST)
- Re: autopsf-patches C++ error 'expected integer but got "" ""' (Wed Feb 23 2011 - 15:03:16 CST)
- Re: autopsf-patches C++ error 'expected integer but got "" ""' (Wed Feb 23 2011 - 10:42:55 CST)
- autopsf-patches C++ error 'expected integer but got "" ""' (Wed Feb 23 2011 - 10:21:11 CST)
- Fwd: autopsf error: failed on end of segment (Wed Dec 22 2010 - 00:50:35 CST)
- autopsf error: failed on end of segment (Tue Dec 21 2010 - 11:49:14 CST)
- Re: k3b also launches vmd (Thu Nov 11 2010 - 02:10:36 CST)
- Re: k3b also launches vmd (Wed Nov 10 2010 - 13:33:43 CST)
- k3b also launches vmd (Wed Nov 10 2010 - 03:05:03 CST)
- about paratool (Thu Jun 03 2010 - 02:50:05 CDT)
- Cutting a bond (Wed May 19 2010 - 13:52:18 CDT)
- Fwd: trajectory_path.tcl queries (Sun Mar 14 2010 - 04:51:02 CDT)
- trajectory_path.tcl queries (Sun Mar 07 2010 - 02:55:03 CST)
- Re: namd-l: Can't find C-PDB bond parameters (Mon Feb 15 2010 - 11:44:52 CST)
- Can't find C-PDB bond parameters (Mon Feb 15 2010 - 03:46:29 CST)
- Re: CAN'T FIND BOND PARAMETERS FOR BOND C - CPB IN PARAMETER FILES (Sun Feb 14 2010 - 11:32:57 CST)
- CAN'T FIND BOND PARAMETERS FOR BOND C - CPB IN PARAMETER FILES (Sun Feb 14 2010 - 10:26:01 CST)
- Fwd: obscurity in sbcg tutorial description (Sat Jan 09 2010 - 16:01:21 CST)
- obscurity in sbcg tutorial description (Sat Jan 09 2010 - 03:37:49 CST)
- Fwd: Failure of AutoSCFBuilder to recognize all monomers (Sun Jan 03 2010 - 09:24:22 CST)
- Failure of AutoSCFBuilder to recognize all monomers (Sun Jan 03 2010 - 04:54:24 CST)
- Fwd: sbcg with multimers (Thu Dec 31 2009 - 04:40:14 CST)
- sbcg with multimers (Wed Dec 30 2009 - 15:22:43 CST)
- Fwd: Fwd: Re: namd-l: Fwd: conf file for coarse grained simulation (Thu Dec 17 2009 - 12:27:15 CST)
- Fwd: Fwd: Re: namd-l: Fwd: conf file for coarse grained simulation (Thu Dec 17 2009 - 02:34:23 CST)
- Re: namd-l: Fwd: conf file for coarse grained simulation (Tue Dec 15 2009 - 10:01:30 CST)
- Re: namd-l: Fwd: conf file for coarse grained simulation (Tue Dec 15 2009 - 02:40:55 CST)
- Re: namd CG minimization error: unable to find angle parameters for nxg nxx nxg (Fri Dec 11 2009 - 09:52:43 CST)
- namd CG minimization error: unable to find angle parameters for nxg nxx nxg (Thu Dec 10 2009 - 10:27:13 CST)
- Re: Restraints on coarse grained model (Wed Dec 09 2009 - 12:49:28 CST)
- Fwd: Restraints on coarse grained model (Wed Dec 09 2009 - 03:07:36 CST)
- Restraints on coarse grained model (Tue Dec 08 2009 - 13:23:59 CST)
- Fwd: CG lipid bilayer vmd 1.8.7 (Mon Dec 07 2009 - 01:31:46 CST)
- Fwd: CG lipid bilayer vmd 1.8.7 (Mon Dec 07 2009 - 02:01:28 CST)
- Re: CG lipid bilayer vmd 1.8.7 (Sun Dec 06 2009 - 13:24:06 CST)
- Fwd: Failure with AutoPSF (PDB has x, y, z zero) (Sat Dec 05 2009 - 14:25:41 CST)
- Fwd: Failure with AutoPSF (PDB has x, y, z zero) (Sat Dec 05 2009 - 12:51:22 CST)
- Failure with AutoPSF (PDB has x, y, z zero) (Fri Dec 04 2009 - 12:35:12 CST)
- in search of lipid files (Thu Dec 03 2009 - 16:11:43 CST)
- Re: CG lipid bilayer vmd 1.8.7 (Thu Dec 03 2009 - 02:57:24 CST)
- CG lipid bilayer vmd 1.8.7 (Wed Dec 02 2009 - 12:13:53 CST)
- Re: namd-l: Re: problems with CG protein-lipidbilayer-water system (Sun Nov 22 2009 - 15:32:18 CST)
- problems with CG protein-lipidbilayer-water system (Sat Nov 21 2009 - 12:00:54 CST)
- coarse-grained solvate usage (Fri Nov 20 2009 - 05:12:35 CST)
- Error: failed on end of segment with RBCG (Sun Nov 15 2009 - 03:18:57 CST)
- (no subject) (Fri Nov 13 2009 - 03:23:21 CST)
- Re: version 1.8.7 for amd64 and cg tools (Fri Nov 13 2009 - 00:02:43 CST)
- Fwd: version 1.8.7 for amd64 and cg tools (Thu Nov 12 2009 - 23:33:42 CST)
- version 1.8.7 for amd64 and cg tools (Thu Nov 12 2009 - 23:15:31 CST)
- CG Builder (Mon Nov 09 2009 - 14:06:44 CST)
- Graphical representation (Sun Mar 29 2009 - 13:59:15 CDT)
- howto select stain reveal map (Thu Mar 26 2009 - 02:30:29 CDT)
- vmd_plot (Wed Mar 25 2009 - 06:16:36 CDT)
- Re: proximity of residues (Wed Jan 23 2008 - 09:19:12 CST)
- proximity of residues (Wed Jan 23 2008 - 01:40:51 CST)
- Re: RMSD with protein ligand (Thu Jan 17 2008 - 11:11:35 CST)
- RMSD with protein ligand (Thu Jan 17 2008 - 00:49:37 CST)
- Re: Cluster analysis (Mon Jan 07 2008 - 15:44:15 CST)
- Re: Cluster analysis (Mon Jan 07 2008 - 12:08:27 CST)
- Re: Cluster analysis (Mon Jan 07 2008 - 04:35:30 CST)
- Cluster analysis (Sun Jan 06 2008 - 04:27:19 CST)
- Membrane POPC (Sat Dec 01 2007 - 17:07:50 CST)
- Delete overlapping residues (Sat Nov 24 2007 - 10:50:32 CST)
- Re: combine.tcl membrane plugin (Thu Nov 15 2007 - 09:50:36 CST)
- Re: combine.tcl membrane plugin (Thu Nov 15 2007 - 03:15:33 CST)
- combine.tcl membrane plugin (Wed Nov 14 2007 - 12:05:12 CST)
- Re: merging two pdb files (Thu Nov 08 2007 - 11:48:23 CST)
- combine.tcl error (Sun Oct 14 2007 - 03:23:23 CDT)
- solvation (Thu Aug 30 2007 - 15:05:59 CDT)
- Re: Paratool Reference (was Re: Paratool Window) (Tue Aug 21 2007 - 10:29:41 CDT)
- chime vs vmd (Sun Aug 12 2007 - 11:11:05 CDT)
- Adjusting R/S configuration (Sat Aug 11 2007 - 02:21:47 CDT)
- Re: chloroform box (Sun Aug 05 2007 - 02:28:15 CDT)
- Re: chloroform box (Sat Aug 04 2007 - 09:08:41 CDT)
- chloroform box (Sat Aug 04 2007 - 00:52:20 CDT)
- Fwd: atom serial number (Sun Jul 01 2007 - 02:59:07 CDT)
- atom serial number (Sun Jul 01 2007 - 02:33:20 CDT)
- vmd and amber (Thu Jun 28 2007 - 16:08:37 CDT)
- Re: paratool/gaff (Thu Jun 14 2007 - 01:45:23 CDT)
- Paratool Add/Edit Internal Coordinates window (Tue Jun 12 2007 - 00:29:05 CDT)
- Re: paratool/gaff (Wed Jun 06 2007 - 10:07:13 CDT)
- Re: Fwd: vmd installation Linux Debian i386 (Tue Jun 05 2007 - 17:47:06 CDT)
- Fwd: vmd installation Linux Debian i386 (Tue Jun 05 2007 - 12:55:05 CDT)
- Re: Installing VMD 1.8.6 (Tue Jun 05 2007 - 01:16:14 CDT)
- Re: Installing VMD 1.8.6 (Mon Jun 04 2007 - 16:14:29 CDT)
- Re: Fwd: Linux installation issue (Sun May 27 2007 - 02:44:32 CDT)
- Fwd: Linux installation issue (Sat May 26 2007 - 09:57:40 CDT)
- Fwd: Linux installation issue (Sat May 26 2007 - 09:47:51 CDT)
- Linux installation issue (Sat May 26 2007 - 09:38:53 CDT)
- VMD installation (Thu May 24 2007 - 16:04:29 CDT)
- Re: paratool/gaff (Thu May 24 2007 - 02:48:06 CDT)
- paratool/gaff (Thu May 24 2007 - 01:14:37 CDT)
- About paratool (Wed May 23 2007 - 09:38:40 CDT)
- Re: Fwd: vmd first installation (Fri May 11 2007 - 11:05:08 CDT)
- Re: Fwd: vmd first installation (Fri May 11 2007 - 02:50:29 CDT)
- Fwd: vmd first installation (Wed May 09 2007 - 16:59:08 CDT)
- vmd first installation (Wed May 09 2007 - 01:24:48 CDT)
Francis Reyes
- Moving domains in VMD (Thu Feb 23 2006 - 09:08:45 CST)
- PDB Parser cannot interpret ^M ? (Tue Feb 14 2006 - 22:53:06 CST)
- Loading structures into sequence alignment extension? (Mon Feb 13 2006 - 11:31:40 CST)
- (no subject) (Thu Feb 17 2005 - 16:33:15 CST)
- Keyboard mapping incorrect for OS X (Thu Feb 17 2005 - 13:50:00 CST)
Francisco José Taberner Sanchis
- Cartoons and secondary structure prediction (Tue May 03 2011 - 05:51:24 CDT)
- Problem with cartoon and secondary structure (Tue May 03 2011 - 05:13:18 CDT)
- Fwd: Problem with cartoon and secondary structure (Tue May 03 2011 - 03:26:18 CDT)
Francois Martz
- Re: writepdb, wrong lines in output (Thu Mar 15 2012 - 04:51:54 CDT)
- writepdb, wrong lines in output (Wed Mar 14 2012 - 12:15:22 CDT)
francy_at_mvcch3.unica.it
- windows 98/ vmd14a2.exe & vmd14b1.exe (Fri Oct 22 1999 - 12:52:43 CDT)
Frank Barry
- Re: rlwrap problem on (Tue Nov 08 2011 - 14:34:21 CST)
- rlwrap problem on (Tue Nov 01 2011 - 10:50:26 CDT)
François-Xavier Coudert
- Re: HBonds criterion (Wed Sep 27 2006 - 03:17:01 CDT)
- HBonds criterion (Tue Sep 26 2006 - 11:18:22 CDT)
Fred (Rui FENG)
- Re: Does command "animate delete all" free memory? (Thu Feb 26 2009 - 17:00:49 CST)
- Re: Does command "animate delete all" free memory? (Thu Feb 26 2009 - 15:57:56 CST)
- Does command "animate delete all" free memory? (Thu Feb 26 2009 - 15:00:53 CST)
- Re: The maximal size which can be displayed by VMD? (Wed Jul 02 2008 - 20:55:07 CDT)
- The maximal size which can be displayed by VMD? (Wed Jul 02 2008 - 16:06:18 CDT)
- Does VMD support to draw a velocity field diagram? (Thu Mar 13 2008 - 16:26:13 CDT)
Fred de Lamotte
- Re: vmd-l digest V1 #514 (Sat Apr 29 2006 - 08:43:56 CDT)
- Re: VMD does not run on MacOS X 10.4 Tiger (Tue May 17 2005 - 01:38:52 CDT)
Fred Moore
- new machine problems. (Mon Aug 13 2007 - 17:58:46 CDT)
- RDF calculations (Fri Jul 13 2007 - 15:16:40 CDT)
- representation selection funnies (Tue Mar 27 2007 - 14:06:21 CDT)
- coloring names (Fri Mar 23 2007 - 13:24:37 CDT)
Fred Salsbury
- How to improve the running of VMD with data on remote servers (Mon Oct 27 2003 - 17:52:47 CST)
- Re: Graphics workstation and Xenon problems with VMD? (Wed Aug 27 2003 - 13:24:11 CDT)
- Re: Graphics workstation and Xenon problems with VMD? (Wed Aug 27 2003 - 06:22:05 CDT)
- Graphics workstation and Xenon problems with VMD? (Tue Aug 26 2003 - 19:49:41 CDT)
Frederick R. Phelan Jr.
- Re: LAMMPS Vizualization (Mon Mar 14 2005 - 17:26:48 CST)
- LAMMPS Vizualization (Mon Mar 14 2005 - 10:21:52 CST)
Frederick Sachs
- High res stl files (Tue Nov 28 2006 - 13:47:11 CST)
Fredrik Sjunnesson
- Python: radius always 1 for cylinder and cones (Wed Feb 06 2002 - 16:04:13 CST)
Fung Wai Keung
- How to make VMD to work with Phantom Haptic Device (Tue May 11 2004 - 06:29:24 CDT)
- How to make VMD work with Phantom haptic device? (Mon Mar 08 2004 - 01:51:40 CST)
- File format of DCD Trajectory file (Mon Sep 29 2003 - 01:10:13 CDT)
FX
- Re: Mac OS compilation? what could be going wrong? (Wed Apr 11 2012 - 14:25:47 CDT)
- Re: Mac OS compilation? what could be going wrong? (Wed Apr 11 2012 - 11:58:36 CDT)
- Re: Mac OS compilation? what could be going wrong? (Wed Apr 11 2012 - 11:57:08 CDT)
- Re: Mac OS compilation? what could be going wrong? (Tue Apr 10 2012 - 03:50:32 CDT)
- Re: Mac OS compilation? what could be going wrong? (Mon Apr 09 2012 - 14:06:06 CDT)
- Mac OS compilation… what could be going wrongQ?= (Sun Apr 08 2012 - 12:03:42 CDT)
- New "surf" calculations in VMD 1.9.1 beta (Wed Jan 18 2012 - 06:12:08 CST)
- Re: VMD 1.9.1 beta 1 posted for download... (Thu Jan 05 2012 - 15:28:58 CST)
- Improve OFF plugin: handle colors (Mon Dec 05 2011 - 07:20:06 CST)
- Patchlet for MacOS 32/64-bit compilation (Sat Jul 02 2011 - 05:13:21 CDT)
- A patch for OFF import and a question about representation of surfaces (Sat Jul 02 2011 - 05:08:08 CDT)
- Re: transparent background (Fri Feb 20 2009 - 18:52:47 CST)
- Re: [patch] Autodetection of formats supported by openbabel (Mon Nov 24 2008 - 17:05:26 CST)
- [patch] Autodetection of formats supported by openbabel (Thu Nov 20 2008 - 05:07:17 CST)
- Re: Tetrahedral representation (Thu Jul 17 2008 - 06:19:09 CDT)
- Tetrahedral representation (Wed Jul 16 2008 - 17:20:22 CDT)
FX Coudert
- Re: HBonds criterion (Tue Sep 26 2006 - 14:38:39 CDT)
FyD
- Re: Re: Viewing with VMD bonds set by the "bond" command (Fri Mar 09 2012 - 12:10:27 CST)
- Release of the R.E.D.-III.5 tools (Wed Feb 22 2012 - 05:00:23 CST)
- q4md-forcefieldtools.org announcement (Fri Nov 25 2011 - 07:33:39 CST)
- Release of R.E.D. Server 2.0 (Thu Nov 04 2010 - 04:50:36 CDT)
- Release of the R.E.D.-III.4 tools (Wed Jul 07 2010 - 02:04:36 CDT)
- R.E.D.-III.3 tools release - q4md-forcefieldtools.org (Sun Oct 04 2009 - 09:37:06 CDT)
- Release of R.E.D. Server (Thu Apr 09 2009 - 03:31:30 CDT)
- vmd error related to opengl (Fri Feb 27 2009 - 18:12:02 CST)
- Release of the R.E.D.-III.1 tools (Mon Jan 12 2009 - 05:59:14 CST)
- Tripos mol2 file in VMD (Mon Nov 05 2007 - 14:57:03 CST)
- Re: Tripos mol2 file in VMD (Mon Nov 05 2007 - 15:14:20 CST)
- Download vmd for 64-bit Intel Itanium (Mon Nov 05 2007 - 15:00:36 CST)
- Force field atom types (Sun Oct 28 2007 - 05:23:11 CDT)
- Automatic loading of mol2 files (Wed May 23 2007 - 10:42:17 CDT)
- Release of the R.E.D.-III tools (Sun Apr 15 2007 - 05:22:35 CDT)
- R/S asymmetric carbon (Fri Dec 01 2006 - 04:02:39 CST)
- Re: visualizing charges (Mon Sep 25 2006 - 04:47:27 CDT)
- Re: visualizing charges (Sat Sep 23 2006 - 01:37:06 CDT)
- Atom name label (Wed Mar 08 2006 - 04:26:17 CST)
- Release of RESP ESP charge DDatabase (Mon Jan 16 2006 - 10:06:08 CST)
- Re: VMD & FC 4.0 (Wed Jul 13 2005 - 15:56:59 CDT)
- VMD & FC 4.0 (Wed Jul 13 2005 - 14:42:37 CDT)
G.H. Zuo
- Re: The display windows is out of my screen (Mon Feb 16 2009 - 00:23:10 CST)
- The display windows is out of my screen (Sun Feb 15 2009 - 00:21:05 CST)
gaborekt_at_duq.edu
- Re: Normalization of RDFs in gofr plugin (Tue Jun 28 2011 - 16:05:59 CDT)
- Normalization of RDFs in gofr plugin (Tue Jun 28 2011 - 12:34:37 CDT)
gadde suneetha
- how to make a movie using Principal Component Analysis (Wed May 16 2007 - 20:02:48 CDT)
- problem during movie making (Fri Mar 30 2007 - 07:44:48 CDT)
- how to view the dynamics in power point presentation (Thu Mar 29 2007 - 06:25:29 CDT)
- doubts in movie making using vmd. (Wed Mar 28 2007 - 19:05:05 CDT)
- How to make a movie in VMD using principle component analysis (Wed Mar 28 2007 - 07:42:56 CDT)
Gadi Oron
- Re: high resolution ps or eps picture (Thu May 13 2004 - 04:48:55 CDT)
- Re: No Subject (Sun Apr 18 2004 - 03:50:37 CDT)
- Re: how to save coordinates after moving molecule in VMD? (Thu Apr 01 2004 - 07:48:21 CST)
- Re: Cartoon representation for large molecules (Thu Jan 01 2004 - 03:52:04 CST)
- solvate documentation. (Thu Oct 17 2002 - 07:05:06 CDT)
Galip Gurkan Yardimci
- calling scripts from the command line (Thu Dec 01 2005 - 04:36:45 CST)
ganderle_at_optonline.net
- installation problem: InstallShield (Tue May 23 2006 - 14:26:50 CDT)
Ganesh Kamath
- Valence bond force field in NAMD (Thu Apr 19 2012 - 09:26:35 CDT)
- Lipid order parameters (Mon Feb 27 2012 - 14:21:13 CST)
- Generating a psf file using VMD (Thu Jan 19 2012 - 16:56:47 CST)
- Fwd: Question regarding HBond analysis (Tue Jan 17 2012 - 12:26:01 CST)
- Question regarding HBond analysis (Mon Jan 16 2012 - 17:05:19 CST)
Gao, Fan, Ph.D.
- Beginner with cyclic peptide (Tue Apr 29 2008 - 11:25:34 CDT)
Gard Nelson
- vmd won't display in lines (Fri Dec 18 2009 - 16:17:45 CST)
Garf
- Re: Thanks :) (Wed Dec 08 2004 - 10:02:08 CST)
- Re: Hi (Fri Nov 05 2004 - 15:29:42 CST)
- Re: Thank you! (Fri Oct 29 2004 - 04:13:47 CDT)
gaurav nandrajog
- Re: solvating a water molecule (Tue Sep 09 2008 - 01:01:33 CDT)
Gaurav Sharma
- DNA and low pH (Wed Jan 31 2007 - 15:06:46 CST)
- SASA calculation for a trajectory (Tue Aug 08 2006 - 20:50:32 CDT)
- Re: Nanotube Simulations (Tue Aug 02 2005 - 13:56:15 CDT)
- Nanotube Simulations (Tue Aug 02 2005 - 08:51:14 CDT)
- PDB Files for Carbon Nanotubes (Sun Jul 17 2005 - 17:22:55 CDT)
- Re: Unprotonating GLU, ASP (Tue Feb 15 2005 - 17:13:16 CST)
- Unprotonating GLU, ASP (Tue Feb 15 2005 - 10:42:06 CST)
- Autoionize plugin problem (Tue Dec 14 2004 - 12:52:03 CST)
- VMD-VRPN-PHANTOM problem ? (Thu Sep 02 2004 - 02:47:24 CDT)
Gavin Murphy
- measure fit alignment problems (Thu Nov 18 2004 - 22:37:35 CST)
Gavin Seddon
- opengl not found (Mon Jan 16 2006 - 10:00:14 CST)
gbellesia_at_chem.ucsb.edu
- vmd 1.8.7 - console window fullscreen (Thu Dec 24 2009 - 16:20:17 CST)
gcmc jie
- draw hydrophobic contact (Thu Nov 30 2006 - 13:41:10 CST)
geetha9999_at_aol.com
- top_all22_prot.inp & par_all22_prot.inp (Sun Feb 14 2010 - 09:49:24 CST)
- amino acid mutation plugin (Thu Feb 11 2010 - 13:37:08 CST)
Gemma Kinsella
- (no subject) (Tue Jun 24 2003 - 10:11:04 CDT)
- (no subject) (Tue Jun 24 2003 - 10:07:26 CDT)
- Re: Protein Reorientation (Mon Mar 03 2003 - 08:39:51 CST)
Genform GK
- Re: problem in reading .nc NETCDF FILE (Fri Sep 25 2009 - 00:21:15 CDT)
- problem in reading .nc NETCDF FILE (Wed Sep 23 2009 - 23:02:10 CDT)
genie lfs
- Re: Change only the CA coordinates in a pdb file via tcl (Mon Jun 14 2010 - 15:45:07 CDT)
- Bug in VMD-1.8.7 multiseq functionality (Wed Jun 02 2010 - 04:54:48 CDT)
- water molecules in residue interaction (Thu May 18 2006 - 06:12:53 CDT)
- bad angels (Mon Apr 24 2006 - 05:06:32 CDT)
- Re: merging two pdbs??? (Thu Apr 13 2006 - 02:36:54 CDT)
- merging two pdbs??? (Thu Apr 13 2006 - 01:26:36 CDT)
Geoff Wood
- Re: python Numeric library problem (Mon Sep 24 2007 - 15:05:54 CDT)
Georg Spiekermann
- workaround for DynamicBonds (Mon Aug 16 2010 - 10:12:10 CDT)
- Polyhedra with two selections? (Mon Nov 30 2009 - 04:01:12 CST)
George M Giambasu
- autoionize "error procesing bonds" (Mon Mar 20 2006 - 16:50:28 CST)
George Madalin Giambasu
- Re: Re: convert prmtop to psf (Mon Jun 21 2010 - 18:09:28 CDT)
- Re: Secondary Structure Depiction (Tue Apr 21 2009 - 11:12:54 CDT)
- Re: namd-l: Truncated Octahedron for VMD and NAMD simulation (Thu May 15 2008 - 15:23:51 CDT)
- Re: RNA (Mon May 14 2007 - 15:40:29 CDT)
- Re: VMD installation (Fri Apr 13 2007 - 11:39:50 CDT)
- Re: reading charmm files (Mon Mar 05 2007 - 08:57:11 CST)
George Tzotzos
- Re: APBS for small molecules (Tue May 15 2012 - 11:01:03 CDT)
- RMSD (Sun Mar 18 2012 - 06:47:36 CDT)
- Recall: Hbond analysis message (Tue Dec 20 2011 - 13:52:02 CST)
- Hbond analysis (Tue Dec 20 2011 - 13:46:38 CST)
- RMSD calculator extension (Tue Aug 23 2011 - 08:59:19 CDT)
- Fwd: Dowser plugin: Error message (Mon Aug 22 2011 - 16:34:31 CDT)
- Re: Displaying protein AND ligand from an amber trajectory (Fri May 20 2011 - 09:16:14 CDT)
- Displaying protein AND ligand from an amber trajectory (Fri May 20 2011 - 08:31:17 CDT)
Georgios Scheiner-Bobis
- VMD (Tue Jul 08 2003 - 03:39:38 CDT)
Georgios Villias
- Windows/Cannot generate .dx file! (Mon Jan 15 2007 - 10:12:43 CST)
Gerald Mathias
- render "color by volume" (Tue Jun 17 2008 - 13:27:15 CDT)
Germain Salvato Vallverdu
- RE: How can I add bonds ? (Thu Jan 27 2011 - 16:38:08 CST)
- RE: How can I add bonds ? (Thu Jan 27 2011 - 15:10:57 CST)
- RE: How can I add bonds ? (Thu Jan 27 2011 - 14:31:08 CST)
- How can I add bonds ? (Mon Jan 24 2011 - 09:01:39 CST)
- Re: RMSD Question (Mon Nov 29 2010 - 02:56:05 CST)
- VASP crystal structure visualisation (Thu Nov 25 2010 - 08:32:11 CST)
- VASP crystal structure visualisation (Thu Nov 25 2010 - 06:41:35 CST)
Germain Vallverdu
- Re: How can I add bonds ? (Wed Jan 26 2011 - 08:57:30 CST)
- Draw a box cell for a crystal (Wed Sep 15 2010 - 06:43:35 CDT)
- Re : ellipsoidal particles (Sun May 02 2010 - 15:29:22 CDT)
- ellipsoidal particles (Sun May 02 2010 - 14:10:43 CDT)
Ghaleb El Masri
- Calculating volumes enclosed by SAS (Fri Nov 21 2008 - 14:44:39 CST)
Ghalib Bello
- NAMDENERGY: function of 'cutoff' parameter when -pme option is enabled (Mon May 05 2008 - 23:02:45 CDT)
Ghislain Deslongchamps
- VMD 1.8.2 on MacOS 10.3 (Mon Jan 05 2004 - 19:32:22 CST)
Gianluca Interlandi
- Re: VMD1.9.1 is crashing my system (Fri May 11 2012 - 16:58:47 CDT)
- Re: flashing the VMD (Tue May 08 2012 - 11:23:06 CDT)
- Re: VMD Display Error - Detected X11 'Composite' extension (Thu Mar 08 2012 - 20:55:14 CST)
- RE: TCL strangeness (Thu Dec 08 2011 - 20:27:28 CST)
- TCL strangeness (Thu Dec 08 2011 - 18:09:20 CST)
- Tip to start VMD with external terminal (Thu Dec 08 2011 - 16:06:27 CST)
- Re: VMD slows down at multiple windows (Thu Nov 17 2011 - 16:32:09 CST)
- Re: Feedback wanted from Linux VMD users with ATI/AMD graphics chipsets (Fri Nov 11 2011 - 13:01:17 CST)
- Re: Feedback wanted from Linux VMD users with ATI/AMD graphics chipsets (Fri Nov 11 2011 - 12:30:08 CST)
- Re: tkinter load problem in VMD (Sun Nov 06 2011 - 00:13:41 CDT)
- tkinter load problem in VMD (Sun Nov 06 2011 - 00:04:42 CDT)
- Re: rlwrap problem on (Tue Nov 01 2011 - 14:15:49 CDT)
- Re: rlwrap problem on (Tue Nov 01 2011 - 14:14:51 CDT)
- Re: Structure preparation via VMD (Sat Oct 29 2011 - 10:55:28 CDT)
- Thinkpad X120e with Linux and VMD (Thu Oct 20 2011 - 19:48:32 CDT)
- Intel HD3000 versus ATI Mobility Radeon 6310 (Wed Aug 17 2011 - 00:09:01 CDT)
- Reading PSF with extended atom types (Wed Jun 22 2011 - 00:05:18 CDT)
- Re: Aligning two proteins of varying atom numbers (Fri May 20 2011 - 11:26:25 CDT)
- Re: PhD position in Computational Structural Biology at MPI Muenster (Sun May 15 2011 - 14:42:22 CDT)
- Re: Simple Question regarding psf generation (Tue Apr 19 2011 - 11:05:21 CDT)
- Re: Mouse event listener (Thu Mar 17 2011 - 13:21:42 CDT)
- Re: how to make default background color to white (Tue Mar 08 2011 - 12:13:10 CST)
- VMD and Monte Carlo (Mon Jan 31 2011 - 14:13:24 CST)
- License question (Sat Jan 29 2011 - 16:19:27 CST)
- psfgen 1.4.7 and CMAP extended PSF (Wed Dec 08 2010 - 19:11:17 CST)
- Re: Re: Experience with Asus Netbook (Wed Sep 29 2010 - 18:38:32 CDT)
- Re: Re: Experience with Asus Netbook (Wed Sep 29 2010 - 16:54:50 CDT)
- Re: Re: Experience with Asus Netbook (Wed Sep 29 2010 - 16:34:24 CDT)
- Re: Re: Experience with Asus Netbook (Wed Sep 29 2010 - 15:18:53 CDT)
- Re: Experience with Asus Netbook (Tue Sep 28 2010 - 15:19:47 CDT)
- Experience with Asus Netbook (Sun Sep 26 2010 - 14:01:40 CDT)
- Re: VMD 1.8.7 terminal window (Sat Sep 25 2010 - 20:02:55 CDT)
- VMD 1.8.7 terminal window (Mon Sep 20 2010 - 00:10:26 CDT)
- Re: Mouse event listener (Sun Sep 19 2010 - 20:42:36 CDT)
- Mouse event listener (Wed Sep 15 2010 - 16:11:41 CDT)
- Mouse event listener (Wed Sep 15 2010 - 15:20:37 CDT)
- Re: Error processing bonds (Fri Apr 24 2009 - 14:09:59 CDT)
- Re: Error processing bonds (Fri Apr 24 2009 - 11:12:31 CDT)
- Re: Error processing bonds (Fri Apr 24 2009 - 10:15:38 CDT)
- Error processing bonds (Fri Apr 24 2009 - 01:41:07 CDT)
- Re: namd-l: DCD for windows (Tue Mar 06 2007 - 17:32:09 CST)
- Re: namd-l: recentering protein in the waterbox (Fri Jun 18 2004 - 18:16:35 CDT)
Gianluca Santarossa
- advanced python console (Tue Sep 04 2007 - 09:17:45 CDT)
- [OT] pdb files with lots of residues (Thu Jan 30 2003 - 09:10:23 CST)
- Re: Surfaces/Cavities (Thu Jan 23 2003 - 03:17:41 CST)
- Re: SCRIPT directory... (Thu Jan 16 2003 - 04:10:48 CST)
Gino
- about tcl program and run tcl script in namd (Sat Apr 16 2005 - 01:31:23 CDT)
Giovanni
- Re: Re: namd-l: dcd files generated with catdcd (Fri Apr 30 2004 - 13:08:33 CDT)
- dcd files generated with catdcd (Fri Apr 30 2004 - 04:11:00 CDT)
Giovanni Bellesia
- Re: Searching for Number of Resname (Thu Mar 26 2009 - 15:16:25 CDT)
- Re: namd-l: TXT program editor (Thu Aug 28 2008 - 16:21:03 CDT)
- Re: backbone dihedral angles over trajectory (Fri Aug 08 2008 - 17:36:44 CDT)
- Re: vmd MacOSX using dispdev (Fri Jul 18 2008 - 16:00:00 CDT)
- Re: ResdueType and hydrophobicity scale (Wed Jul 16 2008 - 02:13:46 CDT)
- Re: contour plots (Thu Jul 10 2008 - 01:09:36 CDT)
- ResdueType and hydrophobicity scale (Wed Jul 02 2008 - 18:16:29 CDT)
- Re: coloring according to charge of residues (Mon May 12 2008 - 10:58:45 CDT)
- Re: radial distribution function and number integrals (Wed Mar 05 2008 - 21:26:22 CST)
- Re: radial distribution function and number integrals (Wed Mar 05 2008 - 13:21:01 CST)
- radial distribution function and number integrals (Wed Mar 05 2008 - 11:45:31 CST)
- Re: Alignment (Mon Nov 05 2007 - 12:10:58 CST)
- Re: residue selection (Fri Oct 12 2007 - 14:28:29 CDT)
- residue selection (Fri Oct 12 2007 - 14:19:32 CDT)
- Re: Changing the Index values of a molecule (the differenece between gro and pdb files) (Wed Aug 15 2007 - 13:32:56 CDT)
- Re: Loading up PDB files in absolute coordinates (Fri Jun 22 2007 - 14:24:11 CDT)
- Re: list in TCL (Mon Jun 04 2007 - 19:39:37 CDT)
- Re: some parameters for TIP3P (Fri Jul 21 2006 - 16:34:57 CDT)
- Re: Is there any script to analyze radius gyration, center of mass of namd traj file dcd? (Thu Jun 22 2006 - 16:19:33 CDT)
- Re: RMSD question (Wed Aug 17 2005 - 06:04:38 CDT)
- Re: namd-l: conformational alignment (Wed Mar 30 2005 - 16:40:36 CST)
- Re: Distance calculation in TkConsole (Thu Feb 10 2005 - 08:00:15 CST)
- Re: SMD (Mon Feb 07 2005 - 13:19:24 CST)
Giovanni Settanni
- volume slice problem (Fri Jul 25 2003 - 06:04:38 CDT)
Gitte Iversen
- Superimposing two molecules in VMD (Mon Nov 29 1999 - 02:38:09 CST)
- Gromacs trajectories in VMD (Mon Nov 22 1999 - 01:22:02 CST)
Gkourmpis, Thomas
- Polymer Building in VMD (Tue May 22 2012 - 08:21:12 CDT)
- VMD Question: How to build a polymer in VMD? (Thu Apr 26 2012 - 03:51:45 CDT)
Glenn Johnson
- bonding across periodic boundary (Tue Apr 12 2005 - 12:14:53 CDT)
- Re: VMD, NAMD and Interactive Essential Dynamics (IED) (Mon Mar 21 2005 - 12:08:26 CST)
- Re: VMD, NAMD and Interactive Essential Dynamics (IED) (Mon Mar 21 2005 - 10:39:00 CST)
Gloria Rendon
- [vmd-l] Graduate assistanship in Bioinformatics at NCSA (Wed Mar 28 2007 - 17:45:25 CDT)
Goldsmith, Jacob
- RE: RDF calculation for production steps (Thu Sep 15 2011 - 08:25:20 CDT)
- RE: autoionize adds too many ions (Wed Jul 20 2011 - 12:10:28 CDT)
- RE: changing the color of Sn atom (Wed May 11 2011 - 08:45:50 CDT)
- RE: Tcl plugin development and debugging (Tue Apr 12 2011 - 11:57:28 CDT)
- RE: tcl script (Fri Mar 11 2011 - 13:59:36 CST)
- RE: problem on making a movie (Fri Mar 11 2011 - 09:20:58 CST)
- RE: multiple topology files and resetpsf (Wed Feb 09 2011 - 07:38:42 CST)
- multiple topology files and resetpsf (Tue Feb 08 2011 - 10:11:54 CST)
Gopinath Subramanian
- Change requested in lammps plugin for VMD (Fri May 15 2009 - 11:42:38 CDT)
Gordon Wells
- Re: Very peculiar problem with bigdcd if not running interactively (post moved over from namd forum) (Mon Aug 20 2007 - 04:49:51 CDT)
- Re: qsub (torque/maui) and vmd (Tue Sep 05 2006 - 02:09:09 CDT)
- Re: qsub (torque/maui) and vmd (Mon Sep 04 2006 - 13:01:42 CDT)
- Re: qsub (torque/maui) and vmd (Mon Sep 04 2006 - 09:31:33 CDT)
- qsub (torque/maui) and vmd (Mon Sep 04 2006 - 08:25:54 CDT)
Goutham
- paratool error (Tue Aug 31 2010 - 20:02:30 CDT)
- vmd paratool - getting GAUSSIAN charges (Tue Aug 31 2010 - 10:51:48 CDT)
- PBC + DCD wrap/unwrap (Mon Dec 14 2009 - 13:37:36 CST)
- Re: Velocity Auto Correlation (Fri Sep 25 2009 - 02:10:04 CDT)
- Re: Velocity Auto Correlation (Thu Sep 24 2009 - 20:23:39 CDT)
- Re: Velocity Auto Correlation (Sun Sep 20 2009 - 15:23:09 CDT)
- Re: Velocity Auto Correlation (Fri Sep 18 2009 - 22:25:02 CDT)
- Re: Velocity Auto Correlation (Fri Sep 18 2009 - 15:52:44 CDT)
- Velocity Auto Correlation (Fri Sep 18 2009 - 14:53:42 CDT)
- PSF for AMBER top + crd files (Tue Sep 15 2009 - 16:35:23 CDT)
- Hydrogen Bonding energy (Thu Jul 23 2009 - 20:56:52 CDT)
- Re: pairInteraction and NAMDEnergy (Thu Apr 02 2009 - 11:21:27 CDT)
- Re: pairInteraction and NAMDEnergy (Wed Apr 01 2009 - 22:43:23 CDT)
- pairInteraction and NAMDEnergy (Wed Apr 01 2009 - 17:05:52 CDT)
- Re: openGL library (Tue Mar 31 2009 - 13:34:38 CDT)
- Re: openGL library (Tue Mar 31 2009 - 12:15:57 CDT)
- Re: helix axes (Tue Mar 31 2009 - 10:30:30 CDT)
- Re: Graphical representation (Sun Mar 29 2009 - 15:01:50 CDT)
- Re: openGL library (Fri Mar 27 2009 - 01:34:00 CDT)
- Re: openGL library (Fri Mar 27 2009 - 00:32:34 CDT)
- openGL library (Thu Mar 26 2009 - 19:48:52 CDT)
- merging atomselection (Wed Mar 25 2009 - 16:54:33 CDT)
- Command line argument (Wed Mar 25 2009 - 10:12:19 CDT)
- Re: adding lipid bilayers (Fri Mar 06 2009 - 08:38:25 CST)
- adding lipid bilayers (Fri Mar 06 2009 - 00:46:47 CST)
- Re: Hydrophobicity Scale (Thu Mar 05 2009 - 19:36:46 CST)
- Hydrophobicity Scale (Thu Mar 05 2009 - 18:58:41 CST)
gozorows_at_uci.edu
- Re: calculating b-factors from trajectories (Wed May 23 2007 - 14:00:53 CDT)
- calculating b-factors from trajectories (Tue May 22 2007 - 17:53:27 CDT)
gpat_at_bioacademy.gr
- Re: Haptic devices for IMD (Fri Jan 20 2012 - 05:01:35 CST)
- Haptic devices for IMD (Wed Jan 18 2012 - 09:56:21 CST)
Grace Brannigan
- Re: file splitting (Thu May 17 2012 - 10:40:25 CDT)
Grace Clay
- Spring quality watches offer (Mon Apr 14 2008 - 11:47:27 CDT)
Grant Schauer
- Re: Large positive non-integer charge (Thu May 12 2011 - 18:03:12 CDT)
- Re: Large positive non-integer charge (Thu May 12 2011 - 14:16:14 CDT)
- Large positive non-integer charge (Thu May 12 2011 - 13:16:46 CDT)
- Re: VMD-Main window doesn't load after change in .vmdrc (Mon Jun 04 2007 - 22:20:30 CDT)
- VMD-Main window doesn't load after change in .vmdrc (Mon Jun 04 2007 - 20:22:55 CDT)
Grazia Daminelli
- reading charmm files (Mon Mar 05 2007 - 07:48:22 CST)
- IC from paratool (Mon Feb 26 2007 - 02:35:27 CST)
greddy1_at_umd.edu
- Eigen values of Moment of Intertia Tensor (Fri Apr 25 2008 - 15:12:19 CDT)
- Eigen values of Moment of Intertia Tensor (Fri Apr 25 2008 - 10:19:52 CDT)
- Bug in the tcl script (Tue Feb 13 2007 - 13:18:58 CST)
- Bug in the Tcl script (Fri Feb 09 2007 - 19:51:24 CST)
Greg Moore
- distance to solvent accessible surface (Wed Jun 04 2003 - 15:29:42 CDT)
Gregor Kladnik
- Re: Trouble installing VMD on LINUX machine SOLVED (Thu Sep 18 2008 - 11:18:40 CDT)
- Trouble installing VMD on LINUX machine (Thu Sep 18 2008 - 06:43:14 CDT)
Gregorio Alanislobato
- Re: REMD + RBCG (Tue Aug 17 2010 - 19:51:10 CDT)
- Re: REMD + RBCG (Tue Aug 17 2010 - 18:26:08 CDT)
- Re: RSMD of coarse grained molecules (Tue Aug 17 2010 - 16:14:46 CDT)
- REMD + RBCG (Tue Aug 17 2010 - 16:12:22 CDT)
- Re: RSMD of coarse grained molecules (Mon Aug 16 2010 - 20:29:13 CDT)
- RSMD of coarse grained molecules (Mon Aug 16 2010 - 12:13:59 CDT)
- Inserting amino acids to a protein (Thu Aug 05 2010 - 14:24:56 CDT)
Gregorio Fernandez
- Re: problems with MDFF (Mon Apr 09 2012 - 06:21:33 CDT)
- problems with MDFF (Fri Apr 06 2012 - 02:42:22 CDT)
Greipel.Joachim_at_MH-Hannover.DE
- VMD and Remote X-Servers (Tue Dec 28 2004 - 08:39:32 CST)
Greta Bush
- The discreet replica store (Mon May 05 2008 - 01:28:30 CDT)
griadi_at_utalca.cl
- Axes dilema (Fri Aug 11 2006 - 18:11:07 CDT)
- Re: RDF.tcl (Fri Jul 28 2006 - 17:01:24 CDT)
- Average Structure and RMSD (Wed Jun 21 2006 - 11:28:33 CDT)
- Re: namd-l: bulk density in RDF.tcl (Wed Mar 29 2006 - 16:55:07 CST)
- Re: namd-l: is possible to remove the waterbox before running VMD (Thu Mar 09 2006 - 12:56:38 CST)
- Re: pbc and vmd (Mon Mar 06 2006 - 09:23:09 CST)
- OpenGL Shading Program is not available (Fri Feb 03 2006 - 20:39:37 CST)
- vmd-xplor (Tue Oct 11 2005 - 18:45:46 CDT)
- 100% of CPU usage (Wed Aug 10 2005 - 18:46:46 CDT)
- Re: VMD-1.8.3 installation erRor (Wed Aug 10 2005 - 18:29:12 CDT)
- VMD-1.8.3 installation erRor (Wed Aug 10 2005 - 14:07:57 CDT)
- Re: namd-l: Writing pdb file.. easier way? (Tue Nov 23 2004 - 12:44:03 CST)
Grischa Meyer
- NuVision glasses (Mon Sep 11 2006 - 19:41:25 CDT)
- Re: python math library (Wed Apr 12 2006 - 21:57:19 CDT)
- python math library (Tue Apr 11 2006 - 23:50:22 CDT)
gschlau-cohen_at_berkeley.edu
- Re: creating a povray file (Wed Feb 17 2010 - 15:56:34 CST)
- creating a povray file (Wed Feb 17 2010 - 10:44:02 CST)
gtg991m_at_mail.gatech.edu
- superimpose RNA backbones (Fri Apr 01 2005 - 11:17:21 CST)
Guanglei Cui
- Re: electrostatic potential maps. (Wed Jun 08 2011 - 10:56:40 CDT)
- Re: VMD: 1.8.7 win32 opengl runtime error (Fri Aug 21 2009 - 21:48:43 CDT)
- VMD: 1.8.7 win32 opengl runtime error (Fri Aug 21 2009 - 09:14:56 CDT)
- Re: X_ChangeProperty: BadValue (integer parameter out of range for operation) 0x40 (Tue Jan 08 2008 - 14:40:43 CST)
- X_ChangeProperty: BadValue (integer parameter out of range for operation) 0x40 (Mon Jan 07 2008 - 08:35:14 CST)
- opendx and vmd (Sat Jan 28 2006 - 21:30:52 CST)
- coloring method (Tue Dec 06 2005 - 12:48:55 CST)
- molecule.write() (Thu Aug 25 2005 - 10:19:55 CDT)
- vmd with no x (Thu Aug 11 2005 - 16:35:37 CDT)
- Re: all within selection (Thu Aug 11 2005 - 12:32:32 CDT)
- all within selection (Thu Aug 11 2005 - 10:55:39 CDT)
- window size (Thu Feb 10 2005 - 15:10:21 CST)
- Re: parm7 plugin (Wed Jan 26 2005 - 11:06:21 CST)
- parm7 plugin (Wed Jan 26 2005 - 10:00:13 CST)
- python or Tcl/Tk (Fri Jan 21 2005 - 12:48:12 CST)
- python or tcl/tk (Fri Jan 21 2005 - 11:03:32 CST)
Guenegou, Guillaume [ORDFR]
- Update selection every frame command (Thu Aug 11 2011 - 04:56:11 CDT)
- Command line for thickness parameter (Tue Aug 09 2011 - 06:00:29 CDT)
- Command line for thickness parameter (Tue Aug 09 2011 - 03:46:46 CDT)
- RE: Avoid vmd closing with script (Tue Jul 26 2011 - 01:54:44 CDT)
- Avoid vmd closing with script (Mon Jul 25 2011 - 08:31:01 CDT)
- AMBER coordinates with periodic box (Tue Jul 19 2011 - 08:18:44 CDT)
Guido Polles
- Re: Compiling plugins without netcdf (Wed Jun 01 2011 - 12:59:50 CDT)
- Compiling plugins without netcdf (Wed Jun 01 2011 - 10:09:24 CDT)
- POV renderer and volume coloring problem (Thu Nov 11 2010 - 05:33:00 CST)
guillaume.santini_at_free.fr
- Superimposition: atomselect for reverse topology (Sat Sep 06 2008 - 09:34:52 CDT)
gumbart_at_ks.uiuc.edu
- Lovyeou (Fri Jul 24 2009 - 09:31:56 CDT)
- Loevyou (Thu Jul 23 2009 - 16:55:17 CDT)
Gunnar Schroeder
- electron density map is shifted? (Thu Jul 12 2007 - 19:14:01 CDT)
Guo Zhi
- Re: vmd 1.8.7CUDA/1.8.7/1.8.6 can not start (Tue Jan 12 2010 - 00:02:08 CST)
- Re: vmd 1.8.7CUDA/1.8.7/1.8.6 can not start (Wed Jan 06 2010 - 21:48:14 CST)
- Re: vmd 1.8.7CUDA/1.8.7/1.8.6 can not start (Sun Jan 03 2010 - 22:19:29 CST)
- Re: vmd 1.8.7CUDA/1.8.7/1.8.6 can not start (Sun Jan 03 2010 - 11:41:03 CST)
- vmd 1.8.7CUDA/1.8.7/1.8.6 can not start (Sat Jan 02 2010 - 18:16:54 CST)
- Re: Where is the memory leakage? (Sun Apr 15 2007 - 01:45:32 CDT)
- Where is the memory leakage? (Sun Apr 15 2007 - 00:54:48 CDT)
- Re: Any way to output contact map data (Wed Mar 21 2007 - 03:32:37 CDT)
- Any way to output contact map data (Tue Mar 20 2007 - 09:18:03 CDT)
- Re: how to set atom index (Thu Mar 15 2007 - 19:51:04 CDT)
- how to set atom index (Wed Mar 14 2007 - 10:33:57 CDT)
- Re: How to let vmd do secondary structure judgement for each frame and render it on play movie? (Sat Dec 16 2006 - 02:59:41 CST)
- Re: How to let vmd do secondary structure judgement for each frame and render it on play movie? (Sat Dec 16 2006 - 00:31:00 CST)
- How to let vmd do secondary structure judgement for each frame and render it on play movie? (Fri Dec 15 2006 - 22:47:23 CST)
- Re: GLSL failure in VMD 1.8.5, Nvidia 6200 card (Mon Aug 28 2006 - 21:02:46 CDT)
- GLSL failure in VMD 1.8.5, Nvidia 6200 card (Mon Aug 28 2006 - 08:57:39 CDT)
- how to save a structure after alignment? (Sun May 28 2006 - 04:33:44 CDT)
- how to enable the vmd cachemode in .vmdrc? (Sun May 21 2006 - 02:25:38 CDT)
- Re: How to pick up the lost periodic information? (Tue May 09 2006 - 22:28:42 CDT)
- Re: How to pick up the lost periodic information? (Mon May 08 2006 - 20:57:20 CDT)
- Fwd: How to pick up the lost periodic information? (Mon May 08 2006 - 09:04:46 CDT)
- How to pick up the lost periodic information? (Sun May 07 2006 - 10:32:16 CDT)
gurpreet singh
- speed of movie (Thu Jun 05 2008 - 05:40:55 CDT)
- problem with sidechian representation (Mon Jan 21 2008 - 00:02:37 CST)
- problem regarding stride (Sat Aug 11 2007 - 01:44:25 CDT)
Gurunath Katagi
- get Ramachadran plot using textmode (Fri Dec 09 2011 - 22:00:28 CST)
- labeling bonds between two atoms (Thu Jan 14 2010 - 12:12:36 CST)
- rdf curve (Tue Dec 22 2009 - 08:17:57 CST)
- Re: RMSD for individual residue for a tetarmer (Wed Dec 09 2009 - 04:41:11 CST)
- RMSD for individual residue for a tetarmer (Fri Dec 04 2009 - 00:20:03 CST)
- ied and gypython (Thu Jul 16 2009 - 02:16:21 CDT)
- disulphide bond formation (Fri Jun 05 2009 - 10:14:11 CDT)
- Re: General question about the memory usage of VMD (Mon Jan 26 2009 - 03:10:56 CST)
- (no subject) (Mon Jan 26 2009 - 03:19:30 CST)
gurvisha sandhu
- visualizing trr file (Thu Mar 25 2010 - 03:27:23 CDT)
Gustavo Gust
- Re: bad_alloc error (Wed Nov 11 2009 - 10:17:37 CST)
- Re: bad_alloc error (Wed Nov 11 2009 - 09:58:01 CST)
- bad_alloc error (Wed Nov 11 2009 - 09:04:34 CST)
- pbwithin and within differences (Tue Oct 27 2009 - 06:48:51 CDT)
Gustavo Mercier
- Re: python2.3 and vmd (Wed Oct 27 2004 - 07:59:54 CDT)
- Default resource file (.vmdrc) (Mon Sep 13 2004 - 15:41:02 CDT)
- vmd and Konqueror web browser under Suse 9? (Mon May 31 2004 - 08:20:28 CDT)
Gustavo Seabra
- Re: Rejecting plugin... (Thu Jun 25 2009 - 15:15:25 CDT)
- Re: Rejecting plugin... (Wed Jun 24 2009 - 17:53:26 CDT)
- Rejecting plugin... (Wed Jun 24 2009 - 14:04:25 CDT)
- Movies using Cygwin's ImageMagick? (Thu May 22 2008 - 09:18:45 CDT)
- Cheap 3D Glasses (Mon Apr 23 2007 - 18:07:07 CDT)
- visualizing charges (Fri Sep 22 2006 - 13:37:34 CDT)
- Re: Selecting the "n" closest waters (Thu Jul 13 2006 - 16:59:58 CDT)
- Re: Selecting the "n" closest waters (Thu Jul 13 2006 - 16:39:59 CDT)
- Selecting the "n" closest waters (Thu Jul 13 2006 - 12:39:31 CDT)
- Re: Simple one-liner? (Wed Jun 07 2006 - 12:24:03 CDT)
- Simple one-liner? (Wed Jun 07 2006 - 10:56:02 CDT)
- How to make bold font? (Tue May 23 2006 - 13:40:02 CDT)
- Re: Using RMSD without loading all structures? (Wed May 03 2006 - 13:12:40 CDT)
- Using RMSD without loading all structures? (Wed May 03 2006 - 11:55:25 CDT)
Guy Coates
- Problems with Charmm dcd (Wed Oct 27 1999 - 07:24:17 CDT)
- Re: linux graphics adapters? (Thu Jul 13 2000 - 07:05:42 CDT)
guy.baudoux_at_gskbio.com
- libcprts.so.6 not found by VMD on RedHat EL3 (ia64). (Mon Apr 10 2006 - 08:31:38 CDT)
Gyimesi Gergely
- Re: Re: fglrx driver workaround? (Tue May 17 2005 - 14:19:07 CDT)
- Re: fglrx driver workaround? (Sun May 15 2005 - 10:16:08 CDT)
gökçe ayþe güven
- Problem with moving protein for all frames (Tue May 01 2012 - 16:14:24 CDT)
H Q
- vmd-read data from lammps (Thu May 07 2009 - 20:26:53 CDT)
- lammps and vmd (Mon Jul 10 2006 - 22:04:20 CDT)
h9826299_at_hkusua.hku.hk
- Re: Secondary Structure Stays at the last frame (Wed Jan 18 2006 - 16:19:52 CST)
- Secondary Structure Stays at the last frame (Wed Jan 18 2006 - 15:22:41 CST)
- RMSF value of a group of atoms (Fri Dec 23 2005 - 12:02:16 CST)
- Loading a pdb traj in VMD 1.8.4 beta 6 (Fri Dec 23 2005 - 09:18:30 CST)
- Calculation of RMSF (Wed Dec 14 2005 - 17:10:28 CST)
Haberl Florian
- Re: Re: vmd not starting up on Fedora core 3 linux (Wed Mar 02 2005 - 03:44:07 CST)
Habib.Alehossein_at_csiro.au
- RE: change default drawing and coloring method (Wed May 24 2006 - 22:52:36 CDT)
Hai-Jun Su
- Same pdb file, different image (Thu Feb 22 2007 - 22:11:27 CST)
- load in multiple files once (Fri Feb 09 2007 - 15:53:18 CST)
- file "top_all22_prot.inp" (Tue Feb 06 2007 - 20:26:53 CST)
- making movie file (Mon Feb 05 2007 - 22:41:11 CST)
- visualization code (Wed Aug 09 2006 - 22:31:00 CDT)
- (no subject) (Tue Aug 08 2006 - 10:30:27 CDT)
- (no subject) (Wed Jun 21 2006 - 12:22:29 CDT)
- use phantom with VMD (Tue Sep 13 2005 - 14:39:37 CDT)
- use phantom with VMD (Sun Sep 11 2005 - 11:22:44 CDT)
- RE: CAVE (Wed Sep 07 2005 - 15:35:10 CDT)
- RE: CAVE (Wed Sep 07 2005 - 10:30:05 CDT)
- CAVE (Tue Sep 06 2005 - 23:20:07 CDT)
Haibo Yu
- resid le 250 (Wed Mar 23 2005 - 16:22:15 CST)
haider abbas
- visualization of ghemical figure (Fri Sep 16 2005 - 04:29:37 CDT)
- Re:Re:missing bond problem (Wed Apr 27 2005 - 06:28:03 CDT)
- bond missimg (Mon Apr 25 2005 - 05:25:19 CDT)
Haijun
- Re: save coordinate POSCAR (Tue May 10 2011 - 13:58:07 CDT)
- save coordinate POSCAR (Tue May 10 2011 - 12:56:09 CDT)
Hall, Lisa Michelle
- Re: G(r) tcl script not including intramolecular correlations (Fri May 07 2010 - 10:46:27 CDT)
- G(r) tcl script not including intramolecular correlations (Thu May 06 2010 - 18:12:49 CDT)
hamdi
- Re: Same pdb file, different image (Fri Feb 23 2007 - 03:02:57 CST)
hamid mosaddeghi
- bug in Hbond Option (Mon Sep 19 2011 - 00:37:41 CDT)
- Re: Hbond in VMD (Fri Sep 02 2011 - 05:46:16 CDT)
- Fw: Fw: Hbond in VMD (Wed Aug 31 2011 - 14:50:19 CDT)
- Fw: Hbond in VMD (Wed Aug 31 2011 - 12:28:09 CDT)
- Fw: Hbond in VMD (Wed Aug 31 2011 - 12:29:01 CDT)
- Hbond in VMD (Wed Aug 31 2011 - 03:12:47 CDT)
- Fw: Hbonds for a specific frame (Wed Aug 31 2011 - 01:23:37 CDT)
- request help about hbond (Mon Mar 07 2011 - 13:20:13 CST)
- request help about hbond (Mon Mar 07 2011 - 09:06:20 CST)
Hamsa Priya Mohana sundaram
- How to use bigdcd in vmd batch mode? (Fri Sep 08 2006 - 09:44:45 CDT)
hamze rahimi
- find avgstruct (Fri Nov 04 2011 - 04:30:38 CDT)
- average pdb from dcd file (Thu Oct 27 2011 - 07:39:53 CDT)
- convert pdb format to normal pdb format (Wed Aug 24 2011 - 04:48:09 CDT)
- rmsf (Fri Aug 12 2011 - 01:32:44 CDT)
- package require help (Fri Aug 12 2011 - 01:31:22 CDT)
- MDFF problem (Tue Jul 19 2011 - 23:13:05 CDT)
- zinc-finger protein simulation (Mon Jul 18 2011 - 06:55:08 CDT)
- calculate atom distance between two chain (Mon Jul 18 2011 - 06:31:04 CDT)
- mutate amino acid (Sun Jun 19 2011 - 02:25:05 CDT)
Han Choe
- labeling a residue (Mon May 24 2004 - 03:57:42 CDT)
- amidated C-terminus and pyroglutamate (Sat Jan 31 2004 - 04:01:05 CST)
- patch in psfgen - ionic interaction and hydrogen bond (Sun Jan 25 2004 - 20:42:50 CST)
- RE: docking in VMD (Tue Jan 20 2004 - 01:24:57 CST)
- docking in VMD (Mon Jan 19 2004 - 06:03:48 CST)
hanif mahboobi
- Spam from my email (Wed Nov 23 2011 - 03:38:19 CST)
- (no subject) (Tue Nov 22 2011 - 21:55:31 CST)
- (no subject) (Tue Nov 22 2011 - 18:19:50 CST)
- moveby command (Sun Jul 31 2011 - 06:13:57 CDT)
- 2 Issues in VMD 1.9 beta3 (Fri Mar 11 2011 - 06:10:30 CST)
Hannes Barsch
- shutter glasses with VMD (Wed Mar 01 2006 - 10:33:40 CST)
Hannes Loeffler
- Re: IED 2.02 and VMD 1.8.7 (Wed Oct 13 2010 - 09:24:33 CDT)
- Re: psf gen charmm format (Mon Oct 11 2010 - 07:25:58 CDT)
- Re: Some improvements for 1.8.2 (Fri Jul 25 2003 - 20:58:52 CDT)
- animate delete (Fri Jul 11 2003 - 01:37:45 CDT)
- Re: MSD (Thu May 30 2002 - 01:29:13 CDT)
Hans Martin Senn
- 3Dconnexion SpaceNavigator (OS X) (Wed May 25 2011 - 11:37:51 CDT)
- Python for OS X (Fri Jul 25 2008 - 10:19:38 CDT)
- Re: GLSL Compile Error (VMD 1.8.4, Nvidia Driver 8762) (Mon Jun 26 2006 - 10:32:49 CDT)
- GLSL Compile Error (VMD 1.8.4, Nvidia Driver 8762) (Mon Jun 26 2006 - 03:01:03 CDT)
Hao Sun
- adding water box (Mon May 17 2010 - 19:09:57 CDT)
- adding water box (Mon May 17 2010 - 19:09:36 CDT)
haosheng_at_hec.utah.edu
- Problems with NewCartoon Cartoon Representations (Tue Jan 06 2009 - 15:39:43 CST)
Harindar Keer
- known issues with measure hbonds (Thu Dec 18 2008 - 17:59:34 CST)
- script to change representaiton (Thu Mar 30 2006 - 16:37:49 CST)
- Pair interaction calculation for large number different pairs (Wed Mar 02 2005 - 18:43:45 CST)
- Re: How to activate E2SUN emitter (Thu Feb 03 2005 - 14:09:54 CST)
- Re: How to activate E2SUN emitter (Tue Feb 01 2005 - 15:42:31 CST)
- How to activate E2SUN emitter (Sun Jan 30 2005 - 15:09:37 CST)
- Chloroform Solvent Box (Tue Nov 23 2004 - 11:17:45 CST)
- Rendering (Thu Jul 29 2004 - 17:49:51 CDT)
- width for triangle (Tue Jul 06 2004 - 20:41:58 CDT)
- mpeg doesn't run on media player (Thu Jun 24 2004 - 18:26:59 CDT)
- rotating a representation (Mon Mar 08 2004 - 14:04:10 CST)
- Re: namd-l: LYC Parameter-Topology ? (Wed Nov 19 2003 - 13:01:55 CST)
Harish Lnu
- Re: helical construction (Mon Dec 10 2007 - 15:31:31 CST)
- Re: helical construction (Mon Dec 10 2007 - 13:16:39 CST)
- helical construction (Mon Dec 10 2007 - 10:58:16 CST)
harish vashisth
- Re: Translocate molecule within a box (Wed Nov 23 2011 - 21:43:13 CST)
- Re: Secondary structure elements in VMD (Fri Nov 04 2011 - 19:37:43 CDT)
- Re: query about "ViewChangeRender" plugin (Tue Oct 11 2011 - 10:42:09 CDT)
- query about "ViewChangeRender" plugin (Mon Oct 10 2011 - 17:04:45 CDT)
- Re: MDFF Query: how to convert XPLOR style density maps to DX or SITUS format (Sat Jul 24 2010 - 11:12:27 CDT)
- MDFF Query: how to convert XPLOR style density maps to DX or SITUS format (Fri Jul 23 2010 - 16:28:59 CDT)
Harit Jani
- unit of force using Haptic during IMD (Fri May 14 2004 - 01:34:02 CDT)
- topology and parameter files ? (Thu Dec 11 2003 - 18:09:52 CST)
- .psf and .params files for IMD (Wed Dec 10 2003 - 19:08:02 CST)
- Molecular Simulation using PHANToM Haptic (Mon Nov 24 2003 - 16:36:01 CST)
Harold Hatch
- solvate nonstandard patch error (Wed Jun 16 2010 - 10:42:50 CDT)
Harry Bullen
- Re: Python Module (Fri Jun 08 2007 - 11:03:39 CDT)
- Re: Python Module (Fri Jun 08 2007 - 08:40:36 CDT)
- Python Module (Thu Jun 07 2007 - 13:00:41 CDT)
Hassan Shallal
- visualizing small molecule in a trajectory file .trr and .gro using VMD (Fri Jun 04 2010 - 22:49:33 CDT)
- generating PSF file for a small molecule (Sun May 23 2010 - 03:53:58 CDT)
Haw-Zan Goh
- How to change the python include and linkage path in configure script (Mon Feb 27 2012 - 12:15:06 CST)
hayagreevan R
- problem with viewing gromacs xtc files in vmd (Mon Mar 27 2006 - 05:30:22 CST)
Hazai Eszter
- Rotation matrix translatin vector vmd (Thu Jul 26 2007 - 05:37:23 CDT)
Heather Mayes
- Re: Make "Load all at once" the default? Adding representations? (Wed May 02 2012 - 15:50:28 CDT)
- Re: Make "Load all at once" the default? Adding representations? (Tue May 01 2012 - 17:18:41 CDT)
- Make "Load all at once" the default? Adding representations? (Tue May 01 2012 - 15:45:39 CDT)
HeeSung Choi
- Re: question of iso-surface in VMD graphical representations (Thu Mar 12 2009 - 14:13:42 CDT)
- question of iso-surface in VMD graphical representations (Thu Mar 12 2009 - 13:04:01 CDT)
Heidenreich, Joseph David
- RE: Coloring atoms by a general scalar (Thu Jul 02 2009 - 14:17:25 CDT)
- Coloring atoms by a general scalar (Tue Jun 30 2009 - 12:19:29 CDT)
Heidi Perrett
- Web Portal NAMD Job Visualisation...possibilities? (Wed Nov 03 2010 - 22:15:38 CDT)
Heikki Kasnanen
- VS: Outline rendering style with Tachyon (Mon May 18 2009 - 14:50:52 CDT)
- Outline rendering style with Tachyon (Tue Mar 03 2009 - 02:20:08 CST)
- How to set the default properties of drawing methods? (Thu Nov 13 2008 - 08:39:43 CST)
Heiko Carstens
- VMD command line Windows98 (Thu Jun 15 2000 - 03:28:38 CDT)
Helena Slater
- Get your watch now (Wed Apr 23 2008 - 12:17:13 CDT)
henri mone
- Sasa implentation/ algorithm VMD (Thu Jul 01 2010 - 17:19:06 CDT)
Henry Yuen
- Tachyon doesn't take into account ColorID (Mon Jul 30 2007 - 12:54:13 CDT)
Herbert Georg
- quality rendering (Wed Jul 13 2005 - 15:27:44 CDT)
- Re: multistructure XYZ (Thu Oct 28 2004 - 16:11:31 CDT)
- Re: multistructure XYZ (Thu Oct 28 2004 - 15:50:12 CDT)
- Re: multistructure XYZ (Thu Oct 28 2004 - 15:46:59 CDT)
- multistructure XYZ (Thu Oct 28 2004 - 14:52:58 CDT)
Hernán Alonso
- Volume coloring problems (Tue May 24 2005 - 03:44:48 CDT)
Heshe Peshkin
- (no subject) (Tue Jun 29 2004 - 14:58:01 CDT)
Hess, Bret
- Changing color of a given atom (Mon Oct 11 2004 - 18:31:03 CDT)
- Specifying distances for bond cutoffs? (Mon Oct 11 2004 - 18:24:06 CDT)
- Where can I read the specifications on molecular file formats? (Wed Feb 11 2004 - 22:46:17 CST)
Hideki Hatanaka
- Re: Question: Cannot input hostname (LINUXAMD64.opengl) (Fri Jan 27 2006 - 10:42:52 CST)
Hideya Nakamura
- making .psf file based on .gro or .pdb (Tue Feb 17 2009 - 18:19:18 CST)
- How to install the inorganicbuilder on Windows vista (Thu Jan 29 2009 - 19:41:45 CST)
Hideya Nakamura via LinkedIn
- Invitation to connect on LinkedIn (Wed Aug 31 2011 - 19:22:00 CDT)
hifiber7_at_compuserve.com
- AD:Family Reunion T Shirts & More (Sat Feb 19 2000 - 11:12:59 CST)
- AD:Family Reunion T Shirts & More (Sat Feb 12 2000 - 02:20:20 CST)
himanshu chandola
- multiple id's (Mon Jan 19 2004 - 15:44:29 CST)
- Re: Naming in XmGrace (Tue Nov 18 2003 - 20:09:09 CST)
- uninitialized coordinates (Tue Nov 11 2003 - 17:58:45 CST)
Himanshu Khandelia
- Visualization in 3-D using NVIDIA quaddro (Wed Apr 09 2008 - 05:27:18 CDT)
- Re: Problem with bigdcd (Fri Oct 19 2007 - 12:25:56 CDT)
- Re: error while generating a tetramer using transformation matrix (Wed Jun 27 2007 - 04:00:50 CDT)
- Re: changing certain dihedral angles while keeping rest of molecule fixed (Wed Jun 06 2007 - 10:02:54 CDT)
- changing certain dihedral angles while keeping rest of molecule fixed (Wed Jun 06 2007 - 04:37:01 CDT)
- Re: Move labels (Thu May 24 2007 - 06:19:25 CDT)
- Re: problem using bigdcd.tcl script does not run beyond the first frame no error reported (Mon May 07 2007 - 10:25:56 CDT)
- problem using bigdcd.tcl script does not run beyond the first frame no error reported (Mon May 07 2007 - 04:42:10 CDT)
- Re: aligning one molecule (Wed Feb 14 2007 - 17:30:18 CST)
- too large an area/lipid in POPE bilayers using membrane plugin (Mon Feb 05 2007 - 11:50:04 CST)
- wildcards in atomselect command (Fri Jan 26 2007 - 05:47:02 CST)
- how to run membrane.tcl from user-defined location ? (Wed Jan 24 2007 - 05:54:51 CST)
- Re: H-bond energy (Fri Jan 19 2007 - 07:41:54 CST)
- rotation to align (Fri Jan 19 2007 - 05:41:31 CST)
- renumbering residues after deletion of atoms (Thu Jan 18 2007 - 09:55:07 CST)
- how to read in a multi-segment psf/pdb pair into vmd (Wed Jan 17 2007 - 05:49:13 CST)
- problem writing correct format psf file from vmd tk-console (Wed Jan 17 2007 - 05:43:06 CST)
hinsen_at_dsm-mail.saclay.cea.fr
- Re: handling electron density maps (.mrc and .map files) (Sun Dec 19 2004 - 03:04:09 CST)
hinsen_at_llb.saclay.cea.fr
- Re: python2.3 and vmd (Wed Oct 27 2004 - 11:43:43 CDT)
- Re: python2.3 and vmd (Wed Oct 27 2004 - 11:36:35 CDT)
- Re: python2.3 and vmd (Wed Oct 27 2004 - 11:17:40 CDT)
- Re: python2.3 and vmd (Tue Oct 26 2004 - 11:07:07 CDT)
- Re: python2.3 and vmd (Sun Oct 24 2004 - 03:47:15 CDT)
- Re: Defining graphics colors (Thu Sep 30 2004 - 03:34:26 CDT)
- Re: Defining graphics colors (Wed Sep 29 2004 - 16:02:31 CDT)
- Re: Defining graphics colors (Wed Sep 29 2004 - 11:57:34 CDT)
- Re: Defining graphics colors (Wed Sep 29 2004 - 03:45:18 CDT)
- Defining graphics colors (Tue Sep 28 2004 - 12:15:05 CDT)
hirdesh kumar
- Query regarding RMSD calculcation (Tue Oct 05 2010 - 00:50:32 CDT)
- Solvent accessible surface area change during MD run (Tue Sep 28 2010 - 04:54:14 CDT)
- Re: Hydrogen bond angle (Fri Aug 27 2010 - 23:25:21 CDT)
- Hydrogen bond angle (Fri Aug 27 2010 - 08:19:29 CDT)
- Re: Structure won't move after loading trajectory (Tue Aug 24 2010 - 23:38:00 CDT)
- Re: RMSF calculation: residue wise (Sat Aug 21 2010 - 06:03:46 CDT)
- Re: RMSF calculation: residue wise (Fri Aug 20 2010 - 13:30:42 CDT)
- RMSF calculation: residue wise (Fri Aug 20 2010 - 11:22:55 CDT)
- Loading Problem (Thu Jul 03 2008 - 06:27:44 CDT)
Hiroyuki Maeshima
- Drawing of bonds while trajectory animation. (Thu Sep 18 2003 - 07:53:17 CDT)
Hirsh Nanda
- Re: compiling VMD on mac (Tue Apr 26 2005 - 14:17:32 CDT)
Hitesh Patel
- Re: how to center protein? (Tue Apr 24 2012 - 11:34:00 CDT)
- Desmond Trajectory Files on the fly in VMD (Tue Mar 13 2012 - 05:13:34 CDT)
- Configure VMD while GROMACS Installation (Tue Feb 07 2012 - 03:39:30 CST)
- Re: RE : PCA of desmond trajectories (Wed Feb 01 2012 - 10:26:44 CST)
- PCA of desmond trajectories (Wed Feb 01 2012 - 09:29:15 CST)
- Re: pbc wrap (Mon Nov 14 2011 - 11:09:41 CST)
- Re: pbc wrap (Mon Nov 14 2011 - 10:17:12 CST)
- pbc wrap (Mon Nov 14 2011 - 08:48:42 CST)
- water bridged H-bond calculation (Thu Oct 06 2011 - 07:17:26 CDT)
- Re: define water cavity using atom selection in graphical representations window (Tue Sep 06 2011 - 04:20:35 CDT)
- Hbonds for a specific frame (Tue Aug 30 2011 - 11:47:23 CDT)
Hitoshi Nejo
- ftp failed (Fri Aug 23 2002 - 02:14:23 CDT)
hkhandel_at_memphys.sdu.dk
- problem with near clip (Fri Dec 01 2006 - 09:26:29 CST)
- problems with large structures (Fri Dec 01 2006 - 09:24:57 CST)
hl332_at_drexel.edu
- absolute C.O.M motion calculation script: help (Wed May 16 2007 - 11:06:45 CDT)
- help for modification into a small tcl script (Tue May 15 2007 - 10:32:17 CDT)
- Re: 'SURF' representation problem (Thu Mar 29 2007 - 18:09:43 CDT)
- 'SURF' representation problem (Thu Mar 29 2007 - 16:04:02 CDT)
- Re: unusual residue type problem.. (Tue Mar 06 2007 - 14:24:17 CST)
- unusual residue type problem.. (Tue Mar 06 2007 - 11:38:08 CST)
- small query... (Fri Aug 18 2006 - 11:17:25 CDT)
- third time..can someone help!! (Tue Jul 11 2006 - 22:09:41 CDT)
- autoionize plugin.. (Mon Jul 10 2006 - 11:38:16 CDT)
Hoch,Jeffrey
- Stationary labels; delays ("wait") in scripts (Thu Feb 19 2004 - 06:40:59 CST)
hodak_at_chips.ncsu.edu
- printing timeline window with axes (Mon Aug 13 2007 - 22:07:27 CDT)
- RE: Uncharged terminal ends? (Tue Nov 29 2005 - 03:22:05 CST)
- RE: Uncharged terminal ends? (Tue Nov 22 2005 - 06:16:44 CST)
- RE: Uncharged terminal ends? (Tue Nov 22 2005 - 05:13:43 CST)
- RE: Uncharged terminal ends? (Tue Nov 22 2005 - 04:40:25 CST)
- RE: Uncharged terminal ends? (Tue Nov 22 2005 - 04:16:55 CST)
- RE: Uncharged terminal ends? (Tue Nov 22 2005 - 04:00:00 CST)
- Re: Uncharged terminal ends? (Tue Nov 22 2005 - 03:18:06 CST)
- Re: Uncharged terminal ends? (Mon Nov 21 2005 - 02:19:10 CST)
- Uncharged terminal ends? (Fri Nov 18 2005 - 17:41:13 CST)
Holger Frauenrath
- Re: MacOS X VMD 1.8 alpha 16 "bundle" test version... (Thu Jul 04 2002 - 11:11:11 CDT)
hongphuc nguyen
- unable to load Amber trajectories to visualize-Coordinate I/O rate 0 frames/sec, 0 MB/sec, 32.4 sec -Please help (Wed Oct 05 2011 - 03:30:58 CDT)
- I can't not see my post in Archive list (Sat Sep 17 2011 - 22:52:58 CDT)
- Re: can not compile VMD plugin (Wed Jun 22 2011 - 22:48:34 CDT)
- can not compile VMD plugin (Wed Jun 22 2011 - 22:15:55 CDT)
- can not import Hessian/charge from single point calculation (Tue Jun 21 2011 - 03:14:15 CDT)
hori koshii
- saltbr# vs. frames (Mon Jul 23 2007 - 06:50:10 CDT)
- RMSD of different molecules (Thu Jul 05 2007 - 20:50:56 CDT)
- command line dcd to trr? (Thu Jul 05 2007 - 20:46:14 CDT)
- Load last frame of dcd on TKconsole (how?) (Sat Dec 30 2006 - 19:20:00 CST)
- psf for already hydrogen-added structure (Thu Jul 20 2006 - 15:09:14 CDT)
Hu Zhonghan
- Re: the console window is automatically closed without any error messages (Thu Sep 06 2007 - 12:31:54 CDT)
- the console window is automatically closed without any error messages (Thu Sep 06 2007 - 10:05:15 CDT)
Hu Zhongqiao
- where is option "Image Smoothing"? (Wed Jul 26 2006 - 00:30:07 CDT)
Hu, Xiaohua
- about superimposing by VMD (Wed May 07 2003 - 13:36:47 CDT)
Hua Wong
- word too long (Wed Jun 16 2004 - 03:40:48 CDT)
- Help about Contact Map plugin. Still puzzled by atom selection. (Thu May 27 2004 - 04:05:56 CDT)
- Help about Contact Map plugin (Tue May 18 2004 - 07:23:24 CDT)
Huaer XC
- Solvate plugin (Wed Apr 27 2005 - 01:28:28 CDT)
- Re: only vmd console (Tue Apr 12 2005 - 21:37:29 CDT)
- Re: only vmd console (Mon Apr 11 2005 - 13:32:49 CDT)
- Re: only vmd console (Sun Apr 10 2005 - 16:40:31 CDT)
- How to remove "Lable" (Thu Apr 07 2005 - 14:46:38 CDT)
huaer_at_myway.com
- Re: Install VMD on Mandrake Linux (Wed Apr 06 2005 - 11:06:26 CDT)
- Install VMD on Mandrake Linux (Wed Apr 06 2005 - 10:37:34 CDT)
- Re: vmd movie maker (Wed Apr 06 2005 - 00:27:28 CDT)
- vmd movie maker (Sat Apr 02 2005 - 17:35:30 CST)
Hugh Ferrel Bowen
- vmd problem: session ended (Thu Apr 26 2007 - 08:46:01 CDT)
Hugh Martin
- Re: Installation issue (Tue Apr 28 2009 - 09:39:29 CDT)
- Installation issue (Tue Apr 28 2009 - 08:09:04 CDT)
Hugo Gutierrez de Teran
- Re: monomer transposes boundary box (Tue May 25 2010 - 08:25:37 CDT)
- Re: monomer transposes boundary box (Tue May 25 2010 - 08:51:26 CDT)
Hugo Gutiérrez de Teran
- monomer transposes boundary box (Tue May 25 2010 - 06:48:04 CDT)
Hui WEI
- about docking with VMD (Tue Jul 19 2011 - 16:37:36 CDT)
Hui-Hsu Tsai
- printing real 3D model using z-printer (Thu Feb 24 2005 - 14:38:04 CST)
- Re: Solvent accessible area/Radii definition (Thu Dec 16 2004 - 15:44:26 CST)
HuiZhe Li
- Re: install 1.8.3 on RHEL4 (Fri Mar 18 2005 - 10:38:30 CST)
- Re: install 1.8.3 on RHEL4 (Fri Mar 18 2005 - 03:00:00 CST)
- Re: install 1.8.3 on RHEL4 (Fri Mar 18 2005 - 02:51:05 CST)
- install 1.8.3 on RHEL4 (Thu Mar 17 2005 - 13:23:15 CST)
Hurt, Darrell (NIH/NIAID) [E]
- Re: Clustering MD trajectories (Fri Sep 16 2011 - 10:17:54 CDT)
- Re: shades of licorice representation (Tue Jul 19 2011 - 15:24:26 CDT)
- Re: shades of licorice representation (Tue Jul 19 2011 - 14:24:42 CDT)
- Re: Helix motions (Mon Feb 07 2011 - 06:54:08 CST)
- Re: RMSD and PSF generation (Tue Dec 21 2010 - 11:18:00 CST)
- Re: Hydrogen bonds plugin obscures charged atoms -- help! (Thu Apr 08 2010 - 15:32:18 CDT)
- Hydrogen bonds plugin obscures charged atoms -- help! (Thu Apr 08 2010 - 11:48:39 CDT)
Hwankyu Lee
- Re: question about "measure dihed" with COM points (Wed Feb 25 2009 - 14:55:39 CST)
Hyonseok Hwang
- making a movie (Thu Oct 13 2005 - 00:13:21 CDT)
- Re: wrong bond and bond breaking (Fri Apr 15 2005 - 12:24:00 CDT)
- wrong bond and bond breaking (Fri Apr 15 2005 - 11:14:43 CDT)
- question on ion size (Mon Nov 01 2004 - 17:53:29 CST)
Hyun Tae Jung
- radial distribution function problem (Wed May 26 2010 - 08:42:48 CDT)
Hyundeok Song
- Re: VMD HOLE Result (Tue Jun 02 2009 - 14:05:59 CDT)
- VMD HOLE Result (Tue Jun 02 2009 - 08:49:20 CDT)
hzf101_at_psu.edu
- Failure to open PDB files (Mon Aug 25 2008 - 13:12:52 CDT)
Höfling Martin
- External renderer not rendering colors from volumetric data (Wed Mar 25 2009 - 08:34:24 CDT)
Ian
- Problem writing trajectory to "crd" (Amber) format? (Wed Jul 16 2008 - 04:43:24 CDT)
Ian Stokes-Rees
- Clarification on solvent box sizing (Wed Sep 22 2010 - 14:42:30 CDT)
- Re: where can I download Tachyon version 0.98.10 ? (Mon Aug 16 2010 - 12:03:30 CDT)
- Re: Interpreting a contact map (Fri Aug 13 2010 - 16:11:29 CDT)
- Re: VMD questions about animating residue distance lines and contact maps (Fri Aug 13 2010 - 10:30:15 CDT)
- Interpreting a contact map (Thu Aug 12 2010 - 16:17:12 CDT)
- VMD questions about animating residue distance lines and contact maps (Thu Aug 12 2010 - 15:56:18 CDT)
- Re: multiseq/stamp alignment of coiled coil bundle and homo-dimer (Fri Jul 30 2010 - 13:14:47 CDT)
- Re: multiseq/stamp alignment of coiled coil bundle and homo-dimer (Tue Jul 27 2010 - 16:54:53 CDT)
- multiseq/stamp alignment of coiled coil bundle and homo-dimer (Tue Jul 27 2010 - 14:37:02 CDT)
- Re: PC suitable for visualisation of large systems, maximum namuber of atoms in a .pdb file (Wed Jul 21 2010 - 12:20:56 CDT)
- Re: PC suitable for visualisation of large systems, maximum namuber of atoms in a .pdb file (Wed Jul 21 2010 - 07:07:51 CDT)
- Re: VMD failure of RMSD Traj Tool, time index on each rendered frame, and crash (Tue Jul 20 2010 - 11:00:11 CDT)
- Re: compilation of vmd 1.8.7 source (Tue Jul 20 2010 - 10:07:45 CDT)
- VMD failure of RMSD Traj Tool, time index on each rendered frame, and crash (Mon Jul 19 2010 - 12:10:16 CDT)
- Adding other online PDB data bases to VMD (Fri Jul 16 2010 - 18:46:31 CDT)
- Re: Building VMD on OS X 10.6 with Python and CUDA support (Fri Jul 16 2010 - 02:41:24 CDT)
- Re: Building VMD on OS X 10.6 with Python and CUDA support (Fri Jul 16 2010 - 02:24:38 CDT)
- Building VMD on OS X 10.6 with Python and CUDA support (Thu Jul 15 2010 - 22:44:34 CDT)
ianboru_at_email.arizona.edu
- Protein coordinate rotation (Fri Sep 05 2008 - 12:40:48 CDT)
IBC strbio
- ied.py : tk.h version (8.3) doesn't match libtk.a version (8.4) (Wed May 18 2005 - 05:38:02 CDT)
Ibrahim Dunga
- Confidential (Fri May 14 2004 - 07:37:05 CDT)
Ibrahim Moustafa
- Re: vmd-l digest V1 #1086 (Wed Jun 11 2008 - 11:27:48 CDT)
Ignacio FernÃ¡ndez GalvÃ¡n
- Re: Locked files in Windows 7 (Thu Sep 22 2011 - 11:48:23 CDT)
Ignacio Fernández Galván
- Locked files in Windows 7 (Thu Sep 22 2011 - 06:08:13 CDT)
- Re: Molden format plugin (Thu Mar 17 2011 - 13:33:50 CDT)
- Molden format plugin (Thu Mar 17 2011 - 11:12:33 CDT)
- Re: atom selection in vmd (Wed Nov 17 2010 - 12:30:59 CST)
- Re: 3D protein visualization (Tue Nov 09 2010 - 03:05:03 CST)
- Algorithm for RMSD and alignment (Tue Oct 26 2010 - 11:47:18 CDT)
- Re: H-bond life time (Wed Sep 15 2010 - 07:24:14 CDT)
- Re: Reading output of quantum packages and plotting orbitals (Fri Oct 23 2009 - 09:29:32 CDT)
- Re: Reading output of quantum packages and plotting orbitals (Fri Oct 23 2009 - 03:29:22 CDT)
- Re: Reading output of quantum packages and plotting orbitals (Fri Oct 02 2009 - 03:01:36 CDT)
- Reading output of quantum packages and plotting orbitals (Wed Sep 30 2009 - 11:57:35 CDT)
- Re: Selecting the sides of a benzene ring (Wed Jul 30 2008 - 02:24:58 CDT)
- Re: Selecting the sides of a benzene ring (Wed Jul 23 2008 - 02:39:23 CDT)
- Selecting the sides of a benzene ring (Tue Jul 22 2008 - 06:30:21 CDT)
- Re: Dipole moment? (Tue Jul 15 2008 - 09:52:07 CDT)
- Re: How to visualize iron and chlorine properly. (Tue Jun 24 2008 - 03:25:40 CDT)
- Volume slice color scale (Fri Jun 20 2008 - 04:15:39 CDT)
- Re: About occupancy volume maps (Thu Jun 19 2008 - 02:43:11 CDT)
- About occupancy volume maps (Fri Jun 13 2008 - 05:40:17 CDT)
- Re: GLSL lost (Tue Mar 18 2008 - 04:59:41 CDT)
- GLSL lost (Mon Mar 17 2008 - 12:17:21 CDT)
- Using RMSDTT in a script and aligning volume data (Fri Mar 07 2008 - 03:35:55 CST)
- Volume data formats (Thu Feb 14 2008 - 11:58:40 CST)
- Viewing molden grid files (Fri Dec 21 2007 - 03:14:46 CST)
- Re: CMYK (Wed Oct 31 2007 - 06:28:02 CDT)
- Video card query (Thu Jul 05 2007 - 02:34:12 CDT)
- Re: Text/Labels on ray tracing external renderer (Wed Jun 27 2007 - 02:07:23 CDT)
- Variable number of atoms in xyz file (Tue Apr 24 2007 - 02:58:20 CDT)
- Changing the display window size in a script (Fri Feb 09 2007 - 02:37:02 CST)
- Re: Units for Measure Dipole (Tue Feb 06 2007 - 03:50:06 CST)
- Adding bonds in a script (Thu Sep 28 2006 - 04:08:08 CDT)
- Re: Labels not appearing with "load state" (Mon Sep 11 2006 - 02:28:23 CDT)
- Labels not appearing with "load state" (Fri Sep 08 2006 - 07:59:07 CDT)
- Dynamic bond calculation (Tue Aug 29 2006 - 02:49:30 CDT)
- Selections in periodic boxes (Thu Feb 16 2006 - 05:24:07 CST)
Ignacio Rodriguez Fernandez
- sball.h not found (Sat Jun 25 2005 - 08:47:16 CDT)
Igor Schapiro
- Export VMD graphics to POV-Ray (Fri Jan 11 2008 - 08:22:13 CST)
- Re: POV-Ray 3.6; VMD Movie Maker; Continuous Render (UNCLASSIFIED) (Fri Jan 11 2008 - 07:23:57 CST)
ikek70
- How to show 3D images in the display window of VMD (Fri Jun 02 2006 - 11:15:20 CDT)
- simple plugin (Wed May 31 2006 - 15:35:53 CDT)
ILJA Khavrutskii
- Re: vmd 1.8.3 on OS X 10.2.8 (Jaguar) libmx.A.dylib (Mon Jun 20 2005 - 18:26:50 CDT)
- vmd 1.8.3 on OS X 10.2.8 (Jaguar) libmx.A.dylib (Mon Jun 20 2005 - 17:47:47 CDT)
- RE: How to read i8(64 bit) trajectory (.dcd) file with 32 bit VMD (Sun May 23 2004 - 18:51:25 CDT)
- How to read i8(64 bit) .crd file with 32 bit VMD (Sat May 22 2004 - 12:07:23 CDT)
Iman Salehinia
- atoms selection (Sat Feb 19 2011 - 16:33:27 CST)
- Color bar (Thu Aug 20 2009 - 16:46:36 CDT)
- Re: accessing bonds angles dihedrals etc lists after PSF file is read into VMD (Mon Jan 26 2009 - 16:10:39 CST)
- Re: accessing bonds angles dihedrals etc lists after PSF file is read into VMD (Thu Jan 22 2009 - 18:21:59 CST)
- Getting data as vector or matrix (Tue Dec 02 2008 - 00:48:29 CST)
- Camera in VMD!!! (Fri Oct 24 2008 - 23:10:35 CDT)
- change the radius of atoms (Wed Oct 22 2008 - 21:35:36 CDT)
- Selecting some atoms and changing the color of them (Tue Oct 21 2008 - 01:55:03 CDT)
Iman Salehinia via LinkedIn
- Invitation to connect on LinkedIn (Tue Jun 14 2011 - 18:31:13 CDT)
INPE (Ingrid Viveka Pettersson)
- Crystal water (Thu May 22 2008 - 04:32:59 CDT)
- output of distances between atoms or coordinates (Thu Sep 20 2007 - 08:27:39 CDT)
Insight II
- what's the unit for color scale data range? (Thu Jul 19 2007 - 15:09:17 CDT)
Inês Sousa
- Transform pdb files in psf files using VMD (Thu Mar 01 2007 - 04:35:44 CST)
Ioana Cozmuta
- extended xyz (Fri May 26 2006 - 10:57:03 CDT)
- Re: xyz files into dcd trajectory (Wed May 24 2006 - 16:11:22 CDT)
- Re: xyz files into dcd trajectory (Wed May 24 2006 - 15:38:54 CDT)
- xyz files into dcd trajectory (Tue May 23 2006 - 18:55:51 CDT)
- two references- I got them, thank you! (Wed Apr 26 2006 - 16:15:11 CDT)
- two references (Wed Apr 26 2006 - 15:18:28 CDT)
- reconstructing PMF (Tue Apr 11 2006 - 16:57:02 CDT)
- force over selection (Wed Mar 22 2006 - 23:51:46 CST)
- Re: large selection (Wed Mar 15 2006 - 23:33:46 CST)
- Re: large selection (Tue Mar 14 2006 - 18:17:46 CST)
- large selection (Tue Mar 14 2006 - 18:00:27 CST)
- Re: Adding Salt to a system (Wed Jun 22 2005 - 20:59:47 CDT)
- Re: VMD 1.8.4 test builds, 32-bit and 64-bit AIX5... (Thu Jun 23 2005 - 17:12:47 CDT)
- Re: VMD 1.8.4 test builds, 32-bit and 64-bit AIX5... (Tue Jun 21 2005 - 21:36:27 CDT)
- Re: VMD 1.8.4 test builds, 32-bit and 64-bit AIX5... (Tue Jun 21 2005 - 17:47:24 CDT)
- script problem (Thu Apr 29 2004 - 23:09:49 CDT)
- coloring selection (Mon Apr 26 2004 - 15:19:25 CDT)
- Re: making ps files (Fri Apr 09 2004 - 17:10:14 CDT)
- making ps files (Thu Apr 08 2004 - 14:55:34 CDT)
- residence time (Tue Mar 23 2004 - 21:51:10 CST)
- entropy calculations (Mon Feb 23 2004 - 17:41:54 CST)
- Rama plot (Fri Feb 20 2004 - 19:48:17 CST)
- (no subject) (Mon Dec 08 2003 - 18:10:49 CST)
- Re: running vmd in batch mode (Thu Nov 06 2003 - 19:19:30 CST)
- running vmd in batch mode (Thu Nov 06 2003 - 15:46:19 CST)
- Re: namd-l: Re: bigdcd (Wed Nov 05 2003 - 18:29:25 CST)
- bigdcd (Wed Nov 05 2003 - 17:00:40 CST)
- bigdcd (Tue Nov 04 2003 - 19:52:51 CST)
- SMD: constant velocity or force pulling? (Thu Oct 30 2003 - 21:02:54 CST)
- aminoacid mutation (Mon Oct 27 2003 - 18:23:58 CST)
- vmd 1.8.1 (Wed Oct 15 2003 - 18:54:58 CDT)
- Re: DCD unit cell data (Wed Oct 15 2003 - 16:40:18 CDT)
- Re: loading crd files into VMD (Wed Oct 15 2003 - 15:48:51 CDT)
- vmd information (Wed Oct 08 2003 - 20:12:20 CDT)
- Re: loading trj file (Fri Sep 12 2003 - 13:58:28 CDT)
- loading trj file (Thu Sep 11 2003 - 18:06:47 CDT)
- question about selection (Thu Sep 04 2003 - 17:10:41 CDT)
- simple question (Tue Sep 02 2003 - 19:05:41 CDT)
- Re: need urgent help (Fri Aug 29 2003 - 23:24:44 CDT)
- Re: reading/writing (Thu Aug 28 2003 - 20:10:53 CDT)
- need urgent help (Thu Aug 28 2003 - 13:04:30 CDT)
- Re: reading/writing (Mon Aug 25 2003 - 19:29:55 CDT)
- reading/writing (Mon Aug 25 2003 - 18:24:27 CDT)
- Re: rgb to mpg (Mon Aug 11 2003 - 13:31:44 CDT)
- Re: rgb to mpg (Fri Aug 08 2003 - 18:56:30 CDT)
- rgb to mpg (Fri Aug 08 2003 - 18:20:49 CDT)
- trajectory animation usign PBC (Wed Aug 06 2003 - 17:33:45 CDT)
- Re: error when making a movie (Wed Aug 06 2003 - 00:53:22 CDT)
- Re: error when making a movie (Tue Aug 05 2003 - 22:32:21 CDT)
- error when making a movie (Tue Aug 05 2003 - 18:04:15 CDT)
- movie making (Tue Aug 05 2003 - 14:09:54 CDT)
- Re: Re: CCL:NAMD failure on Berendsen pressure scheme (Thu Jul 31 2003 - 13:03:24 CDT)
- Re: CCL:NAMD failure on Berendsen pressure scheme (Wed Jul 30 2003 - 11:51:49 CDT)
- selection (Fri Jul 25 2003 - 17:38:46 CDT)
- Re: Re: question on resname (Tue Jul 22 2003 - 21:17:10 CDT)
- Re: question on resname (Tue Jul 22 2003 - 21:03:56 CDT)
- Re: question (Tue Jul 15 2003 - 16:58:45 CDT)
- question (Tue Jul 15 2003 - 16:22:42 CDT)
- question on resname (Mon Jun 23 2003 - 16:16:02 CDT)
- Re: problem in loading dcd file? (Fri May 30 2003 - 19:15:14 CDT)
- Re: problem in loading dcd file? (Fri May 30 2003 - 15:56:08 CDT)
- problem in loading dcd file? (Thu May 29 2003 - 19:53:40 CDT)
- center command (Fri May 23 2003 - 17:02:51 CDT)
- Re: solute + solvent temperature? (Thu May 15 2003 - 18:00:23 CDT)
- configuration file (Tue Apr 29 2003 - 19:41:47 CDT)
- Re: unit cell information (Fri Apr 25 2003 - 15:46:35 CDT)
- unit cell information (Fri Apr 25 2003 - 15:34:41 CDT)
- question about periodicity (Mon Apr 21 2003 - 13:38:49 CDT)
- Re: water box (Thu Apr 10 2003 - 20:05:39 CDT)
- Re: water box (Thu Apr 10 2003 - 19:52:25 CDT)
- water box (Thu Apr 10 2003 - 19:00:42 CDT)
- plotting wave functions (Thu Apr 10 2003 - 18:45:23 CDT)
- support for truncated octahedron (Tue Apr 01 2003 - 17:39:04 CST)
- Re: question on Force (Wed Mar 12 2003 - 14:36:26 CST)
- question on Force (Thu Mar 06 2003 - 21:59:48 CST)
- trajectory/movie (Mon Mar 03 2003 - 17:13:55 CST)
- trajectory movie (Mon Mar 03 2003 - 17:11:02 CST)
- multiple cells representation (Mon Feb 24 2003 - 19:19:32 CST)
- making movie SGI (Fri Feb 21 2003 - 15:28:16 CST)
- aligntool (Thu Feb 13 2003 - 17:43:44 CST)
- Re: rna pdb file (Wed Feb 12 2003 - 16:52:32 CST)
- rna pdb file (Wed Feb 12 2003 - 16:03:29 CST)
- bug? (Fri Jan 17 2003 - 22:08:41 CST)
- Cl ions (Thu Jan 16 2003 - 21:05:34 CST)
- SHAKE/namd (Thu Jan 16 2003 - 20:20:05 CST)
- pdb files in VMD/NAMD TUTORIAL (Wed Jan 15 2003 - 21:52:27 CST)
- solvate option in vmd (Tue Jan 14 2003 - 20:05:46 CST)
- water model (Wed Dec 18 2002 - 19:56:03 CST)
- vmd version 1.8 (Wed Dec 18 2002 - 14:42:20 CST)
- amber trajectory (Tue Dec 17 2002 - 23:15:55 CST)
- pdb format (Fri Dec 13 2002 - 20:23:17 CST)
- unix -vmd (Tue Nov 26 2002 - 17:29:25 CST)
ioana_at_pegasus.arc.nasa.gov
- CMYK images (Thu Jul 28 2005 - 21:13:08 CDT)
- residue numbering TCL versus PDB (Tue Jul 26 2005 - 20:32:08 CDT)
- VMD for ALTIX (Thu Dec 16 2004 - 19:25:51 CST)
- Re: trajectory loading (Tue Nov 02 2004 - 17:42:20 CST)
- trajectory loading (Mon Nov 01 2004 - 22:07:43 CST)
- only show some HBonds (Fri Oct 01 2004 - 20:59:35 CDT)
Irena Tuszyska
- SASA (Mon Aug 08 2005 - 04:17:17 CDT)
Irene Newhouse
- RE: VMD and Centos 6 (Sun Jan 22 2012 - 16:17:15 CST)
- RE: VMD and Centos 6 (Sun Jan 22 2012 - 14:39:16 CST)
- VMD and Centos 6 (Sat Jan 21 2012 - 22:49:47 CST)
- RE: Displaying residues on chain A within X of chain B (Sat Sep 10 2011 - 00:49:34 CDT)
- RE: Displaying residues on chain A within X of chain B (Sat Sep 10 2011 - 00:33:25 CDT)
- RE: Displaying residues on chain A within X of chain B (Fri Sep 09 2011 - 19:54:51 CDT)
- Displaying residues on chain A within X of chain B (Fri Sep 09 2011 - 16:19:18 CDT)
- RE: Protein cavities (Fri May 27 2011 - 16:52:50 CDT)
- RE: pbctools plugin & protein-bound ligand (Wed May 25 2011 - 14:59:59 CDT)
- pbctools plugin & protein-bound ligand (Tue May 24 2011 - 14:36:12 CDT)
- how to mark regions in Multiseq (Mon Mar 28 2011 - 19:35:31 CDT)
- pbctools & Desmond trajectory with protein units 'jumping' into other cells (Mon Jan 10 2011 - 13:22:26 CST)
- RE: missing fragments in molefacture (Wed Dec 01 2010 - 00:16:32 CST)
- missing fragments in molefacture (Mon Nov 29 2010 - 16:08:46 CST)
- RE: catdcd usage with Desmond trajectory (Wed Aug 25 2010 - 15:33:25 CDT)
- RE: catdcd usage with Desmond trajectory (Thu Aug 19 2010 - 22:26:26 CDT)
- catdcd usage with Desmond trajectory (Thu Aug 19 2010 - 16:19:10 CDT)
- Has anyone done ILS successfully? (Wed Jun 02 2010 - 14:39:36 CDT)
- (no subject) (Mon Mar 29 2010 - 15:12:41 CDT)
- RE: wrapping dimer units in a Desmond traj (Thu Mar 18 2010 - 19:43:16 CDT)
- Aligning Desmond Trajectories again (Mon Mar 15 2010 - 15:05:46 CDT)
- RE: running ILS under Windows 7 (Sun Mar 14 2010 - 16:51:20 CDT)
- running ILS under Windows 7 (Sat Mar 13 2010 - 22:32:15 CST)
- RE: Isosurface wraps in PME Electrostatics calc'n (Tue Mar 09 2010 - 15:56:22 CST)
- Isosurface wraps in PME Electrostatics calc'n (Tue Mar 09 2010 - 14:06:02 CST)
- RE: Hbonds calc with residue not in CHARMm (Thu Mar 04 2010 - 12:52:08 CST)
- wrapping dimer units in a Desmond traj (Tue Mar 02 2010 - 13:51:25 CST)
- RE: Hbonds calc with residue not in CHARMm (Sat Feb 27 2010 - 12:17:07 CST)
- RE: Hbonds calc with residue not in CHARMm (Sat Feb 27 2010 - 11:33:43 CST)
- Hbonds calc with residue not in CHARMm (Fri Feb 26 2010 - 14:40:28 CST)
- Probe orientations in ILS (Mon Feb 22 2010 - 13:19:56 CST)
- RE: how to set PBC for ILS (Wed Feb 10 2010 - 16:53:43 CST)
- RE: how to set PBC for ILS (Wed Feb 10 2010 - 17:01:24 CST)
- how to set PBC for ILS (Wed Feb 10 2010 - 16:35:17 CST)
- RE: how long do ILS runs take? (Mon Feb 08 2010 - 16:51:23 CST)
- RE: how long do ILS runs take? (Mon Feb 08 2010 - 14:56:53 CST)
- how long do ILS runs take? (Mon Feb 08 2010 - 14:05:30 CST)
- RE: visualizing APBS output (Wed Jan 20 2010 - 12:26:48 CST)
- RE: visualizing APBS output (Tue Jan 19 2010 - 14:21:33 CST)
- visualizing APBS output (Tue Jan 19 2010 - 13:31:08 CST)
- APBS tutorial link broken (Thu Jan 14 2010 - 17:01:14 CST)
- RE: PME isosurface not superimposed on protein (Mon Jan 11 2010 - 17:17:50 CST)
- PME isosurface not superimposed on protein (Mon Jan 11 2010 - 16:20:50 CST)
- LES problem (Tue Jul 07 2009 - 00:25:20 CDT)
- re: LES problem (Tue Jul 07 2009 - 00:28:21 CDT)
- superimposing proteins based on a few residues (Wed Jul 01 2009 - 15:59:33 CDT)
- RE: Problem in finding the HBonds (Wed Apr 15 2009 - 03:56:52 CDT)
- RE: How to add heme to dowser plugin? (Tue Mar 31 2009 - 16:48:34 CDT)
- RE: How to add heme to dowser plugin? (Mon Mar 30 2009 - 20:39:59 CDT)
- How to add heme to dowser plugin? (Mon Mar 30 2009 - 19:27:01 CDT)
- RE: problem with Dowser (Wed Mar 11 2009 - 00:59:08 CDT)
- RE: problem with Dowser (Sun Mar 08 2009 - 00:55:03 CST)
- problem with Dowser (Sat Mar 07 2009 - 19:50:35 CST)
- RE: (Tue Mar 03 2009 - 15:37:48 CST)
- RE: (Tue Mar 03 2009 - 14:55:11 CST)
- (no subject) (Fri Feb 27 2009 - 14:08:30 CST)
- RE: odd render problems with Vista (Sun Jan 11 2009 - 19:49:29 CST)
- RE: odd render problems with Vista (Sun Jan 11 2009 - 18:20:08 CST)
- RE: odd render problems with Vista (Sun Jan 11 2009 - 18:25:25 CST)
- RE: odd render problems with Vista (Sun Jan 11 2009 - 18:21:59 CST)
- odd render problems with Vista (Sun Jan 11 2009 - 13:26:57 CST)
- RE: need tcl help, please (Fri Nov 21 2008 - 14:36:07 CST)
- need tcl help, please (Fri Nov 21 2008 - 12:57:03 CST)
- H-bond occupancy (Wed Nov 19 2008 - 12:23:58 CST)
- weird behavior with RMSD (Tue Sep 23 2008 - 16:21:02 CDT)
- problems with VMD under linux/64-bit machine (Fri Sep 12 2008 - 15:17:56 CDT)
- problems with autopsf & psfgen (Tue Sep 09 2008 - 13:50:10 CDT)
- RE: Using namdenergy in batch mode to compute dihedral energies (Sun Apr 13 2008 - 11:47:03 CDT)
- RE: Using namdenergy in batch mode to compute dihedral energies (Thu Apr 10 2008 - 21:17:08 CDT)
- Using namdenergy in batch mode to compute dihedral energies (Thu Apr 10 2008 - 15:15:36 CDT)
- RE: script to read dcd frame-at-a-time & write a selection (Tue Mar 25 2008 - 00:11:29 CDT)
- RE: script to read dcd frame-at-a-time & write a selection (Mon Mar 24 2008 - 20:07:20 CDT)
- RE: script to read dcd frame-at-a-time & write a selection (Mon Mar 24 2008 - 20:19:06 CDT)
- RE: script to read dcd frame-at-a-time & write a selection (Mon Mar 24 2008 - 19:26:00 CDT)
- script to read dcd frame-at-a-time & write a selection (Mon Mar 24 2008 - 17:16:39 CDT)
- RE: closewater.tcl (Mon Mar 17 2008 - 18:59:24 CDT)
- RE: closewater.tcl (Mon Mar 17 2008 - 15:50:03 CDT)
- closewater.tcl (Mon Mar 17 2008 - 14:48:37 CDT)
- RE: VMD, NAMDenergy & AMBER parameters (Tue Feb 05 2008 - 12:46:40 CST)
- RE: To create Tetramer (Mon Feb 04 2008 - 17:56:41 CST)
- VMD, NAMDenergy & AMBER parameters (Mon Feb 04 2008 - 17:23:37 CST)
- problems with MDenergy (Wed Jan 30 2008 - 15:06:49 CST)
- RE: re: script hangs when use full dcd file (Fri Jan 25 2008 - 14:56:47 CST)
- re: script hangs when use full dcd file (Fri Jan 25 2008 - 14:14:53 CST)
- problems with a script (Thu Jan 24 2008 - 16:39:40 CST)
- RE: solvate crashes (Thu Nov 22 2007 - 14:25:46 CST)
- solvate crashes (Thu Nov 22 2007 - 04:02:33 CST)
- RE: how to display dcd file written with catdcd using an index file (Tue Oct 30 2007 - 13:30:26 CDT)
- how to display dcd file written with catdcd using an index file (Fri Oct 26 2007 - 14:08:44 CDT)
- RE: problem with rmsd-fullthrottle (Sat Jul 28 2007 - 15:02:54 CDT)
- problem with rmsd-fullthrottle (Fri Jul 27 2007 - 15:16:54 CDT)
- RE: puzzling psfgen problem with deleted atoms coming back (Thu Jul 26 2007 - 17:40:01 CDT)
- RE: residue_rmsd.tcl (Thu Jul 26 2007 - 16:29:55 CDT)
- puzzling psfgen problem with deleted atoms coming back (Fri Jul 13 2007 - 16:47:05 CDT)
- RE: residue_rmsd.tcl (Thu Jul 26 2007 - 16:17:46 CDT)
- residue_rmsd.tcl (Thu Jul 26 2007 - 12:37:51 CDT)
- RE: atoms deleted in patch try to come back (Sun Jul 15 2007 - 18:42:26 CDT)
- RE: atoms deleted in patch try to come back (Sun Jul 15 2007 - 18:37:46 CDT)
- atoms deleted in patch try to come back (Sun Jul 15 2007 - 01:01:48 CDT)
- RE: some principles for building a topology file? (Mon Jul 09 2007 - 22:45:09 CDT)
- some principles for building a topology file? (Mon Jul 09 2007 - 15:27:01 CDT)
Irina Tuszynska
- python (Mon Nov 21 2005 - 11:37:17 CST)
Ismail, Mohd F.
- RE: How to disable CUDA in VMD-1.9? (Wed Nov 30 2011 - 22:31:31 CST)
- RE: viewing dcd files (Tue Aug 02 2011 - 23:49:04 CDT)
- RE: Non-cuda version of VMD on Linux? (Sun May 22 2011 - 02:22:23 CDT)
- Non-cuda version of VMD on Linux? (Sat May 21 2011 - 22:02:01 CDT)
Itamar Kass
- What occupancy at the Hbond plugin mean? (Tue Feb 09 2010 - 05:15:27 CST)
Ivan Degtyarenko
- "get {x y z}" returns single value (Fri Feb 23 2007 - 10:18:16 CST)
- 3D grid data to 2D contour? (Thu Feb 15 2007 - 15:04:05 CST)
- Re: diffusion coefficient (Fri Dec 08 2006 - 05:44:58 CST)
- measure angle between three points in space (Sun Sep 24 2006 - 04:17:52 CDT)
- measure bond length? (Tue Sep 19 2006 - 11:32:05 CDT)
- radial pair distribution function: molecule/water? (Mon Sep 04 2006 - 11:31:35 CDT)
- md trajectory: centering/h-bonb residence/coordination number (Mon Aug 21 2006 - 08:26:44 CDT)
- Re: rendering transparent objects (Wed Aug 16 2006 - 16:50:44 CDT)
- Re: rendering transparent objects (Wed Aug 16 2006 - 16:32:57 CDT)
- rendering transparent objects (Wed Aug 16 2006 - 15:34:35 CDT)
- do not compute/draw bonds? (Thu Jun 23 2005 - 08:36:33 CDT)
Ivan Vyalov
- Re: gofr limit, Kirkwood-Buff integrals (Sat Apr 21 2012 - 14:13:37 CDT)
- Re: gofr limit, Kirkwood-Buff integrals (Fri Apr 20 2012 - 14:49:21 CDT)
- gofr limit, Kirkwood-Buff integrals (Fri Apr 20 2012 - 05:43:18 CDT)
ivana adamovic
- Re: about CHARMM electrostatic potential (Mon Feb 05 2007 - 14:54:15 CST)
- Re: about CHARMM electrostatic potential (Mon Feb 05 2007 - 14:44:51 CST)
- Re: about CHARMM electrostaic potential (Mon Feb 05 2007 - 11:56:35 CST)
- about CHARMM electrostaic potential (Mon Feb 05 2007 - 09:46:47 CST)
- Re: addition on CHARMM electrostatic pot. (Fri Feb 02 2007 - 09:11:44 CST)
- addition on CHARMM electrostatic pot. (Thu Feb 01 2007 - 13:42:08 CST)
- CHARMM electrostatic potential (Thu Feb 01 2007 - 13:17:21 CST)
- CHARMM electrostatic potential (Thu Feb 01 2007 - 08:28:20 CST)
- Re: About CHARMM electrostaic potential map (Wed Jan 31 2007 - 14:30:11 CST)
- About CHARMM electrostaic potential map (Wed Jan 31 2007 - 09:26:19 CST)
- electrostatic potential (Wed Dec 13 2006 - 14:15:09 CST)
- radius of the curvature (Tue Nov 28 2006 - 14:33:01 CST)
- movie making (Thu Nov 23 2006 - 14:22:10 CST)
- water box... (Sat Jun 24 2006 - 08:37:57 CDT)
- Re: Re: graphic representation (Wed Apr 05 2006 - 15:26:53 CDT)
- Re: Re: graphic representation (Wed Apr 05 2006 - 15:06:18 CDT)
- graphic representation (Wed Apr 05 2006 - 12:24:48 CDT)
- MacBookPro and VMD version (Tue Apr 04 2006 - 13:39:38 CDT)
- Re: question about electrostatic potential maps (Wed Mar 01 2006 - 09:43:15 CST)
- Re: question about electrostatic potential maps (Tue Feb 28 2006 - 09:48:47 CST)
- Re: question about electrostatic potential maps (Tue Feb 28 2006 - 09:47:44 CST)
- question about electrostatic potential maps (Mon Feb 27 2006 - 12:19:48 CST)
Ivo Hofacker
- Re: VMD and 3Dfx Glide (Mon Aug 30 1999 - 11:01:15 CDT)
- RE: VMD 1.2b2 Linux & MSMS ... (Wed May 20 1998 - 04:56:29 CDT)
- Re: VMD only read 58 frames from XYZ file (Wed Nov 05 1997 - 13:38:02 CST)
- Re: rock around the clock? (Mon Oct 06 1997 - 21:25:08 CDT)
Izrailev, Sergei
- RE: vmd information (Thu Oct 09 2003 - 09:03:14 CDT)
- RE: File format of DCD Trajectory file (Tue Sep 30 2003 - 11:21:35 CDT)
J T
- Re: question about "measure dihed" with COM points (Wed Feb 25 2009 - 14:43:01 CST)
- Re: question about "measure dihed" with COM points (Tue Feb 24 2009 - 21:37:21 CST)
- Re: Selecting the N-closest Waters (Tue Aug 21 2007 - 20:00:47 CDT)
- Re: Selecting the N-closest Waters (Tue Aug 21 2007 - 18:54:08 CDT)
- Re: Selecting the N-closest Waters (Tue Aug 21 2007 - 16:10:03 CDT)
- Selecting the N-closest Waters (Tue Aug 21 2007 - 12:40:19 CDT)
J. Juraszek
- how to plot waters h-bonded to a protein? (Thu Apr 06 2006 - 08:57:08 CDT)
J. Matthew Franklin
- using xtc file to generate pdb's (Tue Dec 27 2011 - 15:38:23 CST)
- Re: TK console problem (Wed Sep 14 2011 - 20:38:38 CDT)
- Re: TK console problem (Sat Sep 10 2011 - 17:46:38 CDT)
- TK console problem (Tue Sep 06 2011 - 22:40:26 CDT)
J. Nathan Scott
- Re: Viewing "other" data as a trajectory plays (Thu Jan 26 2012 - 13:07:28 CST)
- Viewing "other" data as a trajectory plays (Thu Jan 26 2012 - 11:40:08 CST)
- Adding a three letter residue name to VMD's protein recognition (Thu Oct 27 2011 - 13:13:09 CDT)
- Changing representations on a per-atom per-timestep basis (Tue Jun 28 2011 - 11:34:19 CDT)
- Re: Dynamically updating water colors for each frame of a trajectory (Wed Feb 23 2011 - 12:10:38 CST)
- Dynamically updating water colors for each frame of a trajectory (Wed Feb 16 2011 - 17:17:28 CST)
J. Rui Rodrigues
- Re: script for projection of c-alpha atom cordinates on xy plane (Mon Mar 21 2011 - 12:12:28 CDT)
- problem with IED: 'numpy.ndarray' object has no attribute 'typecode' (Wed Apr 07 2010 - 14:01:37 CDT)
- Re: RuntimeError: tk.h version (8.4) doesn't match libtk.a version (8.5) (Tue Apr 06 2010 - 08:11:00 CDT)
- RuntimeError: tk.h version (8.4) doesn't match libtk.a version (8.5) (Thu Apr 01 2010 - 11:51:06 CDT)
- Re: (Fri Nov 13 2009 - 06:13:52 CST)
- Re: Stop using directory from previous session (Wed Nov 11 2009 - 11:57:37 CST)
- Re: Stop using directory from previous session (Wed Nov 11 2009 - 11:51:38 CST)
- Stop using directory from previous session (Wed Nov 11 2009 - 10:54:01 CST)
- Re: double bonds (Thu Sep 24 2009 - 07:22:09 CDT)
- Re: Select atoms using coordinates (Wed Apr 22 2009 - 13:52:07 CDT)
- Re: VMD atomselect (Thu Apr 02 2009 - 07:19:40 CDT)
- Re: Script problem (Thu Mar 12 2009 - 07:01:30 CDT)
- Re: Script problem (Thu Mar 12 2009 - 06:16:17 CDT)
- Re: hbonds count (Wed Nov 30 2005 - 07:28:41 CST)
- Re: catdcd (Wed Jul 13 2005 - 10:14:57 CDT)
- Re: Can vmd select residues in radius of 3.5 to a specific residue? (Fri Mar 18 2005 - 06:21:08 CST)
- Re: Help using trajectory ca-distance script (Fri Jan 07 2005 - 10:49:57 CST)
- Re: problem (Fri Oct 08 2004 - 10:18:30 CDT)
- Re: no main window (Tue Aug 24 2004 - 06:21:44 CDT)
- Re: readable files (Mon Aug 02 2004 - 15:58:29 CDT)
- Re: Re: namd-l: dcd files generated with catdcd (Fri Apr 30 2004 - 14:02:49 CDT)
- Re: namd-l: dcd files generated with catdcd (Fri Apr 30 2004 - 10:51:27 CDT)
- (no subject) (Fri Oct 17 2003 - 11:46:41 CDT)
- HBonds (Wed Oct 01 2003 - 17:16:37 CDT)
- Periodic images (Tue Jul 29 2003 - 11:43:23 CDT)
- Problem with stride, surf and tachyon in Windows2000 (Wed Mar 26 2003 - 11:47:03 CST)
- mol volume (Wed Jan 29 2003 - 10:17:30 CST)
- Trouble with tcl script (puts command) (Thu Sep 05 2002 - 13:42:20 CDT)
- Couldn't open required GL library (Thu Aug 08 2002 - 18:48:37 CDT)
J. Zheng
- load multiple pdb files simultaneously (Wed May 28 2003 - 18:29:13 CDT)
Jacinto S.
- Re: vmdtext and .cshrc. (Sat Sep 03 2005 - 14:37:29 CDT)
- Re: Python, Numeric, and Mac OS X problem (Fri Aug 26 2005 - 13:32:50 CDT)
Jack Gundrum
- Re: very large pdb file (Thu Feb 23 2006 - 12:13:24 CST)
- very large pdb file (Thu Feb 23 2006 - 11:09:39 CST)
Jack Howarth
- Re: [PyMOL] enable direct rendering DRI on fedora core 2 (Fri Jun 11 2004 - 07:22:35 CDT)
Jackson Gois
- vmdmovie (ppmtompeg) doesn't work (Tue Jan 24 2006 - 12:40:43 CST)
Jacob Kirkensgaard
- Re: get view direction (Tue Feb 16 2010 - 15:21:21 CST)
- get view direction (Tue Feb 16 2010 - 03:58:24 CST)
Jacob Poehlsgaard
- Re: Maestro file export (Wed Jan 13 2010 - 09:15:03 CST)
- Maestro file export (Mon Jan 11 2010 - 03:21:22 CST)
- Re: Paratool Reference (was Re: Paratool Window) (Tue Aug 21 2007 - 06:18:40 CDT)
- VMD 1.8.6b binaries for win32? (Wed Mar 14 2007 - 10:14:45 CDT)
- Re: VMD 1.8.5 startup (Thu Nov 09 2006 - 02:04:51 CST)
- Re: how to select the problematic residues(atoms) (Thu Oct 26 2006 - 07:00:55 CDT)
Jacob Pøhlsgaard
- RE: polynucleotide builder (Mon Apr 24 2006 - 04:31:54 CDT)
- RE: PSF tools in windows and long paths (Wed Feb 15 2006 - 02:51:06 CST)
- PSF tools in windows and long paths (Tue Feb 14 2006 - 03:47:34 CST)
Jacob Story
- RE: Quadro FX1800 , Stereo and VMD (Fri Jul 08 2011 - 13:35:44 CDT)
- RE: Quadro FX1800 , Stereo and VMD (Fri Jul 08 2011 - 13:04:21 CDT)
- RE: Quadro FX1800 , Stereo and VMD (Fri Jul 08 2011 - 11:23:30 CDT)
- RE: 3D Stereo : Windows 7, nVIDIA GEFORCE (Wed Jan 20 2010 - 11:08:38 CST)
- Accelerating your VMD 1.8.7 calculations with an NVIDIA Tesla GPU (Mon Jun 01 2009 - 09:20:22 CDT)
Jacopo Sgrignani
- autoionize (Wed Sep 07 2011 - 09:00:02 CDT)
- Implicit Ligand Sampling (Thu Jul 14 2011 - 14:50:21 CDT)
- Implicit Ligand Sampling (Thu Jul 14 2011 - 11:05:37 CDT)
- writepdb append (Mon Sep 13 2010 - 05:49:20 CDT)
jacopo.sgrignani_at_unifi.it
- vmd ubuntu crash (Thu Nov 01 2007 - 11:45:04 CDT)
- hbond analysis (Sat Mar 24 2007 - 11:03:24 CDT)
- hbond (Fri Mar 23 2007 - 13:29:57 CDT)
Jacqueline Cawthray
- Re: Issues with Paratools and Gaussian (Tue Jan 11 2011 - 17:09:37 CST)
- Paratool Tutorial (Tue Dec 14 2010 - 14:01:59 CST)
- Using LES with solvated, ionized protein (Sun Dec 12 2010 - 18:38:18 CST)
Jae Hyun Park
- Problem in loading data (Sun May 24 2009 - 10:38:24 CDT)
Jaime Sanchez
- setting different colors (Thu Aug 18 2005 - 23:33:32 CDT)
- creating movie files (Fri Aug 12 2005 - 08:34:15 CDT)
- using VMD with LAMMPS (Wed Aug 10 2005 - 13:59:40 CDT)
Jake .
- Drawing oriented cylinders (Wed Dec 29 2004 - 14:16:10 CST)
jake wernik
- opening gromacs .gro file gives warning messsage and does not display the molecule (Mon Jun 16 2008 - 20:19:52 CDT)
Jakob Petersen
- VTF file (Sun Jul 01 2007 - 13:56:58 CDT)
James C. Patterson
- Re: Problem with the move command to rotate a molecule (Wed Dec 08 2004 - 16:15:43 CST)
James E. Magee
- Python callbacks in VMD (Wed Aug 20 2008 - 06:41:52 CDT)
james Fernandez
- VMD QUESTION( Movie making ) (Mon Apr 09 2012 - 16:49:21 CDT)
- Plotting of Co-ordinates on VMD (Fri Mar 30 2012 - 11:37:07 CDT)
James Haven
- apbs electrostatics (Wed Sep 17 2008 - 15:15:08 CDT)
James Irving
- Re: Mac OSX crash with bus error/segmentation fault upon loading pdb/dcd (Mon Jun 30 2008 - 18:10:13 CDT)
- Re: Mac OSX crash with bus error/segmentation fault upon loading pdb/dcd (Mon Jun 30 2008 - 20:03:44 CDT)
- Mac OSX crash with bus error/segmentation fault upon loading pdb/dcd (Sun Jun 29 2008 - 21:14:14 CDT)
James Keener
- Plugin Issue (Wed Mar 28 2007 - 09:45:18 CDT)
James MacDonald
- Re: Re: vmd not starting up on Fedora core 3 linux , InsightII to blame (Fri Mar 04 2005 - 06:33:28 CST)
- Re: Re: vmd not starting up on Fedora core 3 linux , InsightII to blame (Tue Mar 01 2005 - 17:46:09 CST)
- Re: Re: vmd not starting up on Fedora core 3 linux , InsightII to blame (Tue Mar 01 2005 - 17:17:15 CST)
James Melville
- atom fitting in non-PDB order (Mon Feb 07 2005 - 21:27:47 CST)
James Rustad
- transparent background (Fri Feb 20 2009 - 13:55:55 CST)
- Re: xyz animation (Thu Jul 06 2006 - 13:19:21 CDT)
- ppmtompeg (Tue May 02 2006 - 10:39:45 CDT)
- saving coordinates of expanded cell (Tue May 02 2006 - 10:36:26 CDT)
- Re: [vmd] max number of molecules on mac (Tue Jan 17 2006 - 09:55:22 CST)
- [vmd] max number of molecules on mac (Mon Jan 16 2006 - 22:27:30 CST)
- maximum number of molecules (Fri Jan 13 2006 - 13:27:06 CST)
- movies on mac os x (panther) (Mon May 24 2004 - 15:30:19 CDT)
James Starlight
- Saving of pdb-trajectory in NMR-like format (Tue Apr 17 2012 - 09:21:40 CDT)
- Structure preparation via VMD (Sat Oct 29 2011 - 07:29:33 CDT)
- Installing VMD on Debian Linux (Fri Oct 14 2011 - 01:51:01 CDT)
James Stevens
- (no subject) (Fri Feb 18 2005 - 14:24:19 CST)
james tomomi macdonald
- Re: problem with MSMS and VMD (Mon Jul 05 2004 - 16:02:12 CDT)
- problem with MSMS and VMD (Mon Jul 05 2004 - 11:29:29 CDT)
- Re: secondary structure update (Fri Oct 31 2003 - 09:44:09 CST)
- Re: vmd 1.8 Linux mesa on RedHat (Tue Oct 14 2003 - 13:53:53 CDT)
- Re: installation problems with Redhat 9 (Wed Apr 23 2003 - 13:53:11 CDT)
- installation problems with Redhat 9 (Wed Apr 23 2003 - 13:15:22 CDT)
James.Beavis_at_csiro.au
- re: installed vmd_LINUXIA64 but recieve error : /usr/local/vmd/vmd_LINUX: command not found (Wed Nov 14 2007 - 19:28:02 CST)
- installed vmd_LINUXIA64 but recieve error : /usr/local/vmd/vmd_LINUX: command not found (Tue Nov 13 2007 - 21:47:43 CST)
jamesgiacmo_at_aol.com
- Re: Tachyon Rendering with a Surf Representation (Wed Jun 30 2010 - 08:29:39 CDT)
- Tachyon Rendering with a Surf Representation (Tue Jun 29 2010 - 10:12:11 CDT)
jampani srinivas
- water mean residence time (Fri Apr 27 2012 - 17:23:53 CDT)
Jan F. Totz
- VMD and NetCDF under Windows Vista 32bit (Sun Sep 13 2009 - 01:57:02 CDT)
Jan Rychter
- Re: vmd 1.8.6 on MacOS X, with python support, anyone? (Tue May 01 2007 - 14:29:46 CDT)
- vmd 1.8.6 on MacOS X, with python support, anyone? (Mon Apr 30 2007 - 05:39:33 CDT)
Jan Saam
- Re: [vmd_chcwaaa@yahoo.com.cn: about measure dihedral angle] (Fri May 16 2008 - 18:15:51 CDT)
- Re: Paratools problem with Gaussian Output (Tue Mar 11 2008 - 05:40:06 CDT)
- Re: vmd QMtool (Thu Dec 20 2007 - 17:18:10 CST)
- Re: parameter tool tutorial (Thu Dec 20 2007 - 17:50:00 CST)
- Re: Rotate a box with pcb (Thu Oct 18 2007 - 01:14:31 CDT)
- Re: Paratool Reference (was Re: Paratool Window) (Mon Aug 27 2007 - 03:56:34 CDT)
- Re: measure imprp - input order of atoms (Mon Aug 27 2007 - 03:30:41 CDT)
- Re: Problems to load Gaussian .log file in Paratool (Tue Jul 31 2007 - 11:05:34 CDT)
- Paratool Reference (was Re: Paratool Window) (Fri Jun 15 2007 - 11:11:10 CDT)
- Re: paratool/gaff (Fri Jun 15 2007 - 10:04:37 CDT)
- Re: Help with Tcl script (Wed Jun 13 2007 - 04:00:03 CDT)
- Re: paratool/gaff -- Forgotten attachment (Tue Jun 12 2007 - 11:36:46 CDT)
- Re: paratool/gaff (Tue Jun 12 2007 - 11:35:09 CDT)
- Re: Paratool Window (Mon Jun 11 2007 - 14:22:00 CDT)
- Re: ligand parametrization (Mon May 28 2007 - 18:51:57 CDT)
- Re: paratool/gaff (Thu May 24 2007 - 02:26:44 CDT)
- Re: IC from paratool (Fri Mar 02 2007 - 12:41:59 CST)
- Re: a question about paratool (Thu Feb 22 2007 - 18:43:57 CST)
- Re: Regarding com file error (Mon Feb 05 2007 - 12:57:27 CST)
- Re: RE: Regarding paratool, assign atom types (Wed Jan 31 2007 - 14:30:55 CST)
- Re: Regarding paratool (Wed Jan 31 2007 - 14:14:01 CST)
- Re: Regarding paratool (Mon Jan 29 2007 - 11:00:14 CST)
- Re: Regarding paratool, assign atom types (Mon Jan 29 2007 - 10:56:30 CST)
- Re: Paratool problem (Mon Nov 20 2006 - 19:31:45 CST)
- Re: Paratool Problem (Thu Sep 21 2006 - 17:21:29 CDT)
- Re: Paratool Problem (Thu Sep 21 2006 - 14:24:58 CDT)
- Re: problem in visualizing gaussian log file (Thu Sep 14 2006 - 08:09:09 CDT)
- Re: dipole moment (Fri Sep 08 2006 - 12:17:26 CDT)
- Re: dipole moment - corrigendum! (Fri Sep 08 2006 - 12:18:15 CDT)
- TCL wrapper for linear algebra package in VMD (Tue Sep 05 2006 - 19:12:07 CDT)
- Re: Matrix inverse (Tue Sep 05 2006 - 18:13:58 CDT)
- Re: looking for VMD draw scripts. (Mon Sep 04 2006 - 13:20:08 CDT)
- Re: looking for VMD draw scripts. (Fri Sep 01 2006 - 17:11:55 CDT)
- Re: looking for VMD draw scripts. (Fri Sep 01 2006 - 16:43:06 CDT)
- Re: looking for VMD draw scripts. (Fri Sep 01 2006 - 15:59:13 CDT)
- Re: Paratool problem (Thu Aug 31 2006 - 04:02:13 CDT)
- VMD as background job on multiprocessor machine doesn't work? (Wed Jul 05 2006 - 19:46:13 CDT)
- Re: Possible error in aligning/computing RMSD of 2 molecules with three or two atoms (Thu Mar 23 2006 - 18:36:28 CST)
- Re: Possible error in aligning/computing RMSD of 2 molecules with three or two atoms (Thu Mar 23 2006 - 16:17:29 CST)
- Re: Possible error in aligning/computing RMSD of 2 molecules with three or two atoms (Thu Mar 23 2006 - 16:11:55 CST)
- Re: Possible error in aligning/computing RMSD of 2 molecules with three or two atoms (Thu Mar 23 2006 - 15:30:53 CST)
- Re: VMD 1.8.4 beta 11 test version available (Fri Feb 10 2006 - 18:29:34 CST)
- Re: using paratool (Fri Feb 10 2006 - 18:06:31 CST)
- Re: how to start vmd with "menu tkcon on"? (Tue Sep 06 2005 - 03:05:36 CDT)
- Re: determining vdw, elec, and others (Thu Feb 17 2005 - 16:00:00 CST)
- Re: smoothed trajectory (Thu Feb 17 2005 - 11:52:30 CST)
- Re: Outputing Dihedral Indexes for key structures (backbone, alpha-helix, etc...) (Tue Feb 01 2005 - 00:01:29 CST)
- Re: about average structure (Sun Mar 21 2004 - 05:16:00 CST)
- Parameter-Topology-Repository (Wed Nov 19 2003 - 11:56:41 CST)
- send data on demand using IMD? (Thu Nov 13 2003 - 11:59:10 CST)
- Parameter/topology repository (Fri Nov 07 2003 - 06:05:15 CST)
- Re: periodic woes (Fri Sep 12 2003 - 04:42:09 CDT)
- Re: segid and geometry script (Wed Jun 25 2003 - 18:42:52 CDT)
- Re: segid and geometry script (Wed Jun 25 2003 - 18:33:35 CDT)
- Re: Simple potential energy calculations in VMD (Mon Jun 23 2003 - 19:19:47 CDT)
- coloring method: user (Fri Jun 20 2003 - 06:56:26 CDT)
- Re: Dihedral angle calculation! (Wed Jun 04 2003 - 16:54:02 CDT)
- Re: Dihedral angle calculation! (Wed Jun 04 2003 - 11:37:41 CDT)
Jana Black
- parallel capabilities (Tue Jun 26 2007 - 14:27:38 CDT)
- Installation Error Involving TLC (Fri May 25 2007 - 13:44:00 CDT)
Janani.S
- (no subject) (Fri Aug 20 2010 - 22:39:10 CDT)
Jancsó István
- Re: Getting (or changing) molinfo matrices (Thu Jan 25 2007 - 02:29:55 CST)
- Getting (or changing) molinfo matrices (Wed Jan 24 2007 - 03:49:28 CST)
Jane Bailey
- Re: problem of installing vmd 1.8.7 on Mac osx 10.4.11 (Wed Feb 17 2010 - 11:14:55 CST)
- problem of installing vmd 1.8.7 on Mac osx 10.4.11 (Wed Feb 17 2010 - 09:35:53 CST)
Jane Mayberry
- One of a kind replicas (Mon Apr 21 2008 - 07:16:11 CDT)
Janet Jacobsen
- Re: Extensions menu is blank (Tue Sep 09 2008 - 12:07:24 CDT)
- Extensions menu is blank (Mon Sep 08 2008 - 18:46:07 CDT)
jani sahil
- Re: (Tue Jan 05 2010 - 00:49:00 CST)
- Re: vmd installation in linux (Sun Jan 03 2010 - 05:15:26 CST)
- Re: regarding generating movie (Fri Dec 04 2009 - 23:56:42 CST)
- regarding generating movie (Fri Dec 04 2009 - 02:49:19 CST)
- regarding writemol2 (Sat Dec 06 2008 - 00:34:19 CST)
- reagsrding writemol2 (Fri Dec 05 2008 - 00:11:42 CST)
- Re: use configure.options (Mon Nov 17 2008 - 21:27:58 CST)
- regarding rotating dihedral (Tue Sep 16 2008 - 22:26:17 CDT)
jani vinod
- Symposium on Accelerating Biology (Fri Sep 03 2010 - 00:11:03 CDT)
- Re: regarding fit_angle.tcl (Wed May 19 2010 - 01:41:34 CDT)
- Re: regarding fit_angle.tcl (Tue May 18 2010 - 23:14:46 CDT)
- regarding fit_angle.tcl (Tue May 11 2010 - 07:04:20 CDT)
Jason Gans
- DCD architecture dependence (Mon Dec 08 1997 - 08:58:10 CST)
Jason Lee
- RE: namd-l: Nanotube Simulations (Tue Aug 02 2005 - 14:23:32 CDT)
Jason Winget
- Rendering electrostatic surface potentials using Tachyon (Thu May 01 2008 - 15:39:31 CDT)
Javad Azadi
- Trajectory Analysis (Tue Jul 04 2006 - 11:14:36 CDT)
Javaria Ahmad
- a question about paratool (Tue Feb 20 2007 - 06:35:52 CST)
- syntax error in com file (Tue Feb 20 2007 - 06:15:49 CST)
- Re: Re: Regarding com file error (Wed Feb 07 2007 - 16:10:15 CST)
Javaria Ahmed
- Regarding com file error (Sun Feb 04 2007 - 23:23:40 CST)
- RE: Regarding paratool, assign atom types (Mon Jan 29 2007 - 16:22:17 CST)
- Molefacture error (Wed Jan 24 2007 - 17:01:09 CST)
- Regarding paratool (Wed Jan 24 2007 - 16:18:01 CST)
- Is there a way to validate a structure (Thu Nov 09 2006 - 07:41:10 CST)
- How to delete selected atoms from a molecule (Mon Nov 06 2006 - 07:22:54 CST)
Javier Goicochea
- Re: ANGLES and DIHEDRALS ... location in VMD code? (Mon Feb 02 2009 - 08:33:15 CST)
- VMD & NAMD atoms naming convention? (Tue Jan 27 2009 - 03:05:09 CST)
- ANGLES and DIHEDRALS ... location in VMD code? (Fri Jan 16 2009 - 02:17:00 CST)
- Re: Understanding topology files? (Fri Jan 16 2009 - 02:10:19 CST)
- Re: Understanding topology files? (Thu Jan 15 2009 - 10:32:55 CST)
- Re: Understanding topology files? (Thu Jan 15 2009 - 10:11:05 CST)
- Understanding topology files? (Thu Jan 15 2009 - 08:03:50 CST)
Javier Sacristan
- test versions of VMD 1.8.5 -DLPOLY (Thu Aug 10 2006 - 11:44:43 CDT)
- reading DLPoly VMD 1.8.4 (Wed May 17 2006 - 17:55:26 CDT)
- manipulate DLPOLY HISTORY files (Fri Mar 03 2006 - 15:43:37 CST)
javier.vallejos_at_correo.usach.cl
- .psf for porphyrin (Sat Oct 21 2006 - 18:11:19 CDT)
- protein embedding membrane (Fri Sep 08 2006 - 18:06:50 CDT)
- protein in membrane (Fri Sep 08 2006 - 17:35:27 CDT)
Jawahar Neelankatan
- Re: Atomselection in NAMDENERGY (Fri Mar 02 2007 - 08:09:27 CST)
- Updating atomselection from frame to frame (Fri Mar 02 2007 - 06:19:38 CST)
- Re: CPK Graphical Representation (Fri Oct 20 2006 - 19:05:49 CDT)
- CPK Graphical Representation (Fri Oct 20 2006 - 05:57:20 CDT)
Jay Lee
- Tcl script and plugin (Sat Jun 25 2005 - 15:00:13 CDT)
- Adding color scale bar on the screen (Thu Apr 14 2005 - 18:50:22 CDT)
- making animations (Sat Jan 29 2005 - 17:57:05 CST)
- dynamic coloring (Fri Jan 21 2005 - 12:36:39 CST)
Jay McAliley
- crash on ubuntu linux (Sat Sep 03 2005 - 11:41:59 CDT)
Jay Shore
- Re: Small molecules (Sun Oct 14 2007 - 22:42:42 CDT)
- Re: Cube Files - proportion of the electron density (Tue Oct 09 2007 - 14:10:35 CDT)
- Cube Files - proportion of the electron density (Sun Oct 07 2007 - 15:50:40 CDT)
- Re: Text/Labels on ray tracing external renderer (Sat Jun 23 2007 - 09:31:40 CDT)
- Color by volume (Fri Sep 29 2006 - 11:54:42 CDT)
jayant_jacques
- resolving side chain clashes (Thu Dec 13 2007 - 14:05:10 CST)
Jayendra Balasubramanian
- RE: Best fit plane axis (Fri Dec 08 2006 - 14:52:31 CST)
- xyz animation (Thu Jul 06 2006 - 11:00:52 CDT)
- File size limits (Thu Aug 11 2005 - 09:53:44 CDT)
- Re: Viewing MD trajectories (Tue Apr 13 2004 - 16:21:16 CDT)
- Re: Viewing MD trajectories (Tue Apr 13 2004 - 15:02:27 CDT)
- Viewing MD trajectories (Fri Apr 09 2004 - 16:46:48 CDT)
Jayne Wallace
- Cannot read MSMS data files (Mon Jun 21 2010 - 09:12:07 CDT)
jbaucom_at_unity.ncsu.edu
- capturing box dimensions from amber coordinate files (Wed Apr 06 2005 - 12:39:08 CDT)
JC Gumbart
- Re: Force Field ToolKit - Angles (Mon Apr 30 2012 - 15:26:07 CDT)
- RE: Force Field ToolKit - Angles (Sun Apr 29 2012 - 14:57:33 CDT)
- Re: Re: About FFTP with transition metal complexes (Wed Feb 29 2012 - 20:36:18 CST)
- RE: Re: About FFTP with transition metal complexes (Sat Feb 18 2012 - 16:39:55 CST)
- RE: problem with catdcd (Sun Feb 12 2012 - 08:34:56 CST)
- RE: problem with catdcd (Sun Feb 12 2012 - 08:21:18 CST)
- ffTK in the just released VMD 1.9.1 (Sat Feb 04 2012 - 15:04:05 CST)
- Re: calculation hydrogen bond. (Fri Oct 21 2011 - 06:55:18 CDT)
- Re: superimposing groups of three atoms (Fri Oct 21 2011 - 06:53:28 CDT)
- Re: Problem building POPE membrane with plugin using CHARMM36 (Fri Oct 14 2011 - 15:09:44 CDT)
- Re: H Bond Plug-in Questions (Thu Sep 29 2011 - 12:46:25 CDT)
- Re: Does Paratool support CgenFF? (Wed Sep 28 2011 - 09:39:23 CDT)
- RE: Problem building POPE membrane with plugin using CHARMM36 (Wed Sep 21 2011 - 11:44:00 CDT)
- Re: Creating a fragment of the given protein (Mon Sep 19 2011 - 01:56:14 CDT)
- Re: Does Paratool support CgenFF? (Thu Sep 15 2011 - 01:31:32 CDT)
- Re: namd-l: .COOR TO PDB FILE (Sat Aug 13 2011 - 01:29:04 CDT)
- RE: Long atom types from CGenFF causing charge problems (Tue Aug 09 2011 - 23:52:22 CDT)
- Re: Long atom types from CGenFF causing charge problems (Tue Aug 09 2011 - 17:42:32 CDT)
- RE: autoionize adds too many ions (Wed Jul 20 2011 - 10:20:35 CDT)
- RE: question regarding H-bond calculation (Sun May 01 2011 - 11:29:18 CDT)
- Re: count CLA number from different frames (Fri Mar 11 2011 - 20:47:02 CST)
- Re: tcl script (Wed Mar 09 2011 - 11:55:58 CST)
- Re: Mutator Plugin Patching (Wed Mar 02 2011 - 23:48:24 CST)
- RE: PBC & Solvate Tool in VMD (Wed Feb 16 2011 - 07:49:41 CST)
- Re: DOPC membrane (Tue Feb 15 2011 - 19:52:11 CST)
- Re: namd-l: question from a tutorial (Thu Jan 20 2011 - 14:29:23 CST)
- Re: Issues with Paratools and Gaussian (Sun Jan 16 2011 - 17:12:10 CST)
- Re: rmsd with 2 different structures using serial numbers (Wed Dec 22 2010 - 18:07:46 CST)
- Re: rmsd with 2 different structures using serial numbers (Tue Dec 21 2010 - 21:40:43 CST)
- Re: patch CT3 and ACE problems in PSFGEN (Fri Oct 08 2010 - 19:25:12 CDT)
- RE: Ubiquitin - patch? (Thu Oct 07 2010 - 23:14:10 CDT)
- RE: (Thu Oct 07 2010 - 23:19:28 CDT)
- Re: patch CT3 and ACE problems in PSFGEN (Thu Oct 07 2010 - 19:01:15 CDT)
- Re: properly applying patches to create DPPC (Thu Mar 11 2010 - 17:48:11 CST)
- RE: (Wed Mar 10 2010 - 23:26:30 CST)
- RE: (Wed Mar 10 2010 - 23:00:43 CST)
- RE: properly applying patches to create DPPC (Wed Mar 10 2010 - 22:56:48 CST)
- RE: Hbonds calc with residue not in CHARMm (Sat Feb 27 2010 - 12:05:18 CST)
- RE: Hbonds calc with residue not in CHARMm (Sat Feb 27 2010 - 12:19:17 CST)
- RE: Hbonds calc with residue not in CHARMm (Fri Feb 26 2010 - 22:34:42 CST)
- Re: namd-l: Can't find C-PDB bond parameters (Mon Feb 15 2010 - 12:06:41 CST)
- RE: namd-l: Can't find C-PDB bond parameters (Mon Feb 15 2010 - 08:15:53 CST)
- RE: psfgen generates 0 atom .psf file (Fri Feb 12 2010 - 22:58:35 CST)
- Re: paratool: unable to load optimized geometry (Mon Oct 19 2009 - 12:15:56 CDT)
- RE: Disulfude bonds (Tue Oct 13 2009 - 01:20:11 CDT)
- RE: Disulfude bonds (Tue Oct 13 2009 - 01:08:13 CDT)
- Re: transformation matrix (Thu Jun 18 2009 - 15:15:34 CDT)
- Re: known issues with measure hbonds (Mon Dec 29 2008 - 09:31:59 CST)
- Re: namd-l: Changing the Secondary Structure of a Protein (Sun Dec 28 2008 - 08:55:03 CST)
- RE: Autoionize plugin (Wed Nov 19 2008 - 00:23:56 CST)
- Re: running simulation on dual core processor (Fri Sep 19 2008 - 13:50:27 CDT)
- Re: problems with autopsf & psfgen (Fri Sep 12 2008 - 02:51:03 CDT)
- RE: membrane plugin | lipid structures (Sun Jul 27 2008 - 23:36:37 CDT)
- Re: how to create dityrosine links (Sat Jul 26 2008 - 20:21:14 CDT)
- Re: building an uncoming sulfide bridge (Thu Jul 10 2008 - 11:17:46 CDT)
- Re: psf file (Tue Jun 03 2008 - 15:24:36 CDT)
- Re: namd-l: question related to rmsd (Mon May 05 2008 - 16:19:47 CDT)
- RE: about writepdb (Mon May 05 2008 - 00:18:00 CDT)
- RE: rmsd different from rmsd implemented in VMD (Wed Feb 13 2008 - 10:58:13 CST)
- RE: problem with rmsd-fullthrottle (Sat Jul 28 2007 - 15:36:02 CDT)
- RE: atoms deleted in patch try to come back (Sun Jul 15 2007 - 02:02:18 CDT)
- RE: RENDER ISSUES (Thu Jun 07 2007 - 09:07:34 CDT)
- Re: list in TCL (Mon Jun 04 2007 - 19:41:42 CDT)
- Re: Atom names, RES-IDS...!!! (Mon Jun 04 2007 - 18:18:45 CDT)
- Re: show atom number in xyz file (Tue May 22 2007 - 11:59:35 CDT)
- Re: hbonds problem (Sat Feb 17 2007 - 19:57:17 CST)
- Re: aligning molecules with different number of atoms (Mon Feb 12 2007 - 11:58:12 CST)
- RE: atomselection: number of residues (Sun Feb 11 2007 - 12:16:11 CST)
- Re: Re: Re: Regarding com file error (Wed Feb 07 2007 - 16:32:46 CST)
- RE: hingefind (Tue Jan 23 2007 - 10:53:39 CST)
- Re: hingefind (Mon Jan 22 2007 - 19:20:59 CST)
- RE: changing frame (Tue Jan 09 2007 - 23:55:16 CST)
- Re: Removing water in tcl (Fri Jan 05 2007 - 00:13:53 CST)
- Re: differentiating solvent molecules...... (Tue Oct 17 2006 - 12:59:21 CDT)
- Re: Using namdplot from the command line (Thu Sep 28 2006 - 14:05:03 CDT)
- Re: psf for protein (Thu Sep 21 2006 - 18:13:02 CDT)
- Re: psf for protein (Thu Sep 21 2006 - 17:42:35 CDT)
- Re: psf for protein (Wed Sep 20 2006 - 14:43:38 CDT)
- Re: psf for protein (Tue Sep 19 2006 - 10:43:53 CDT)
- Re: DPPC Bilayer Size (Fri Sep 15 2006 - 19:46:30 CDT)
- Re: how to build an atomistic protein from a low resolution data. (Fri Sep 15 2006 - 19:41:23 CDT)
- RE: removing structures from a psf&pdb (Mon Aug 28 2006 - 00:56:18 CDT)
- Re: NAMD minimization error (Sat Aug 12 2006 - 17:29:49 CDT)
- RE: NAMD minimization error (Sat Aug 12 2006 - 12:02:28 CDT)
- Re: residue no. greater than 9999 in pdb files created with VMD (Wed Jul 12 2006 - 11:24:34 CDT)
- Re: bug in membrane plugin (Wed May 17 2006 - 14:21:55 CDT)
- Re: s-s bond in vmd not visualized (Wed Nov 23 2005 - 13:43:35 CST)
- Re: making bonds myself (Tue Oct 25 2005 - 22:34:13 CDT)
- Re: making bonds myself (Tue Oct 25 2005 - 19:32:08 CDT)
- Re: problem with writepdb (Mon Oct 17 2005 - 19:25:49 CDT)
- Re: poorly get coordinates (Thu Oct 13 2005 - 13:43:01 CDT)
- Re: RMSF calculation (Thu Oct 06 2005 - 14:51:53 CDT)
- Re: changing cpk shere scale in TCL (Wed Oct 05 2005 - 13:38:59 CDT)
- Re: VMD removing slightly misplaced atoms (Tue Oct 04 2005 - 18:47:45 CDT)
- RE: dcd tools (Mon Sep 12 2005 - 21:11:58 CDT)
- Re: Reading arrays in VMD (Thu Sep 08 2005 - 11:37:27 CDT)
- RE: Re: vmdtext & Window (Sun Sep 04 2005 - 02:08:01 CDT)
- RE: Replacing DPPC with DPPS (Mon Aug 22 2005 - 00:32:39 CDT)
- Re: small figures (Fri Aug 19 2005 - 12:01:43 CDT)
jcorradi_at_criba.edu.ar
- Re: APBS for small molecules (Tue May 15 2012 - 13:31:15 CDT)
- Re: APBS for small molecules (Tue May 15 2012 - 08:28:28 CDT)
- APBS for small molecules (Sun May 13 2012 - 22:00:08 CDT)
Jean Richelle
- polynucleotide builder (Sun Apr 23 2006 - 17:05:17 CDT)
- Apologizes for "How to select some sugar atoms" (Fri Apr 21 2006 - 00:23:40 CDT)
- How to select some sugar atoms (Thu Apr 20 2006 - 11:37:28 CDT)
- STL rendering (Thu Apr 06 2006 - 09:39:53 CDT)
- alternative display mode of HBonds (Tue Apr 04 2006 - 09:51:18 CDT)
jeela keel
- Re: Re: unit cell volume is zero (Wed Jan 25 2012 - 16:59:19 CST)
- unit cell volume is zero (Wed Jan 25 2012 - 15:56:40 CST)
- Re: Re: atomselect counting (Wed Jan 25 2012 - 13:48:18 CST)
- atomselect counting (Wed Jan 25 2012 - 08:39:47 CST)
- Re: ERROR) measure gofr: bad frame range given. max (Mon Jan 23 2012 - 15:06:10 CST)
- Re: ERROR) measure gofr: bad frame range given. max (Mon Jan 23 2012 - 12:55:54 CST)
- Re: ERROR) measure gofr: bad frame range given. max (Mon Jan 23 2012 - 12:45:22 CST)
- Re: ERROR) measure gofr: bad frame range given. max (Mon Jan 23 2012 - 11:35:59 CST)
- Re: ERROR) measure gofr: bad frame range given. max (Mon Jan 23 2012 - 11:18:04 CST)
- Re: ERROR) measure gofr: bad frame range given. max (Mon Jan 23 2012 - 09:56:43 CST)
- Re: ERROR) measure gofr: bad frame range given. max (Mon Jan 23 2012 - 08:09:54 CST)
- ERROR) measure gofr: bad frame range given. max (Fri Jan 20 2012 - 14:43:13 CST)
Jeff Ames
- problem reading AMBER7 parm file (Wed Jul 17 2002 - 01:51:49 CDT)
Jeff Hoch
- passive stereo projection using a Mac (Tue Sep 18 2007 - 12:18:15 CDT)
- stereo on LCD display = pipe dream? (Wed Aug 16 2006 - 13:46:04 CDT)
- New stage? (Tue Feb 10 2004 - 08:30:02 CST)
- stereo projection, Mac (Mon Nov 03 2003 - 15:19:56 CST)
Jeff Taylor
- Re: fixing a molecule (Tue Jul 31 2001 - 10:19:39 CDT)
- follow up (Mon Jun 04 2001 - 15:30:35 CDT)
- Can a script change the projection? (Mon Jun 04 2001 - 15:04:53 CDT)
- How can I change the wireframe look (Thu Mar 01 2001 - 14:12:50 CST)
Jeff Ulrich
- [VMD TECH] Tracing VMD Variables (Part II) (Wed Apr 30 1997 - 17:42:04 CDT)
- Updated VMD Script Library (Wed Mar 05 1997 - 10:57:03 CST)
Jeffery
- Re: Matrix in VMD (Mon Jan 31 2005 - 14:59:52 CST)
- Matrix in VMD (Mon Jan 31 2005 - 14:18:02 CST)
Jeffrey A Tibbitt
- Re: movie for Openoffice (Fri Nov 17 2006 - 18:36:30 CST)
- Starting VMD at Command Line in OSX (Sat Oct 21 2006 - 13:07:20 CDT)
- Selecting Atomnumber (Tue Oct 03 2006 - 21:15:19 CDT)
- VMD Prompt (Wed Sep 27 2006 - 12:23:40 CDT)
- Which VMD executible to use? (Tue Aug 08 2006 - 10:06:44 CDT)
- color by charge (can colors be changed?) (Thu May 25 2006 - 01:14:37 CDT)
- tcl logging and plugins (Mon Apr 24 2006 - 13:58:01 CDT)
- Re: question about electrostatic potential maps (Thu Mar 02 2006 - 12:02:01 CST)
Jeffrey D. Hartgerink
- Problem with VMD 1.8a21 under MacOS X 10.2 (Tue Aug 27 2002 - 12:32:44 CDT)
Jeffrey Gardner
- vmd-1.8.6 fails with python-2.5 (Fri Aug 24 2007 - 17:20:51 CDT)
Jeffrey Potoff
- Re: Problem with moving protein for all frames (Tue May 01 2012 - 19:53:12 CDT)
- Re: Plotting of Co-ordinates on VMD (Fri Mar 30 2012 - 14:04:27 CDT)
- Re: how to configure Tachyon image render size? (Mon Jan 30 2012 - 14:14:09 CST)
- Re: paratool CHARMM style charges (Tue Dec 27 2011 - 13:55:04 CST)
- Re: Can Catdcd Write Out Periodic Cell Size Information? (Mon Nov 28 2011 - 16:30:08 CST)
- Re: Can Catdcd Write Out Periodic Cell Size Information? (Mon Nov 28 2011 - 15:00:35 CST)
Jeffrey Sanders
- locating or creating a .vmdsensors file for windows VMD (Wed Jul 14 2010 - 12:42:02 CDT)
- Question about vrpn server build for using Phantom with VMD (Tue Jul 13 2010 - 15:05:58 CDT)
Jeffrey Tseng
- Re: changing the color of subset of representation (Wed Mar 15 2006 - 14:54:58 CST)
- Re: changing the color of subset of representation (Wed Mar 15 2006 - 00:03:03 CST)
- Re: changing the color of subset of representation (Tue Mar 14 2006 - 03:18:32 CST)
- Re: changing the color of subset of representation (Mon Mar 13 2006 - 14:12:09 CST)
- changing the color of subset of representation (Sun Mar 12 2006 - 14:52:15 CST)
- VMD display size and position (Sun Oct 23 2005 - 11:55:57 CDT)
- centering the molecule (Sun Oct 02 2005 - 17:53:00 CDT)
- screen size (Sat Sep 17 2005 - 10:12:41 CDT)
- Re: screen size (Sat Sep 17 2005 - 09:47:31 CDT)
- screen size (Fri Sep 16 2005 - 18:09:39 CDT)
Jeffry D Madura
- RE: Color by Volume on an Intel 945GM (Sat Oct 20 2007 - 16:22:42 CDT)
- Color by Volume on an Intel 945GM (Sat Oct 20 2007 - 14:42:07 CDT)
- VMD on Playstation 3 (Fri Sep 14 2007 - 06:30:58 CDT)
- Generating water transparency around a protein (Fri Sep 14 2007 - 06:31:14 CDT)
Jehanzeb Hameed
- Stripping out H20 (Sun Jul 26 2009 - 18:24:33 CDT)
Jelle van Sijl
- molecular dipole moment (Wed Feb 03 2010 - 11:21:33 CST)
jen hsin
- Re: positioning of a compound (Wed Aug 12 2009 - 15:02:15 CDT)
- Re: Average strcuture (Tue May 19 2009 - 09:08:41 CDT)
jen ramus
- vmd runs slowly on vmware (Mon Nov 04 2002 - 17:05:14 CST)
- vmd checking socket in tcl (Mon Oct 28 2002 - 19:30:04 CST)
- vmd python availability on other platforms (Tue Jul 16 2002 - 22:31:07 CDT)
- Regular Expression problem with $ (Tue Apr 30 2002 - 20:24:52 CDT)
- Access to Python libraries from Mandrake8.1 (Wed Feb 27 2002 - 19:08:08 CST)
- Loading new molecules into VMD from an application (Wed Feb 20 2002 - 17:25:44 CST)
Jen-Chang Chen
- Re: Ployhedra in VMD (Mon Sep 26 2005 - 07:56:53 CDT)
- Ployhedra in VMD (Wed Sep 14 2005 - 03:58:30 CDT)
Jennie Thomas
- Re: Box dimensions (Tue Jun 19 2007 - 18:28:12 CDT)
- Box dimensions (Tue Jun 19 2007 - 17:59:53 CDT)
- Re: Writing a trajectory - with box information (Tue Nov 21 2006 - 14:46:10 CST)
- Re: Writing a trajectory - with box information (Tue Nov 21 2006 - 13:13:46 CST)
- Writing a trajectory - with box information (Mon Nov 20 2006 - 22:09:12 CST)
- Re: Question about measure gofr (Fri Oct 06 2006 - 15:36:16 CDT)
- Question about measure gofr (Fri Oct 06 2006 - 12:02:43 CDT)
Jennifer A Carvajal
- Elastic Properties (Tue Nov 14 2006 - 14:51:13 CST)
Jennifer Brookes
- combine.tcl error (Thu Nov 13 2008 - 04:23:03 CST)
Jennifer Lardge
- VASP plugins (Thu Aug 03 2006 - 07:21:42 CDT)
Jennifer Williams
- command for volume slice? (Wed May 11 2011 - 08:16:25 CDT)
- Slice through molecule (Wed May 11 2011 - 06:32:13 CDT)
- Modelling program that does hydrogen adjust (Thu May 27 2010 - 10:21:49 CDT)
- High quality movies, bmp frames and videomach=poor quality (Wed Apr 21 2010 - 05:57:11 CDT)
- Fwd: High quality movies, bmp frames and videomach=poor quality (Wed Apr 21 2010 - 05:56:33 CDT)
- Re: Colouring atoms named with the same first letter (Tue Apr 20 2010 - 10:13:04 CDT)
- Colouring atoms named with the same first letter (Fri Apr 16 2010 - 08:15:07 CDT)
- Re: Broken bonds in trajectory due to pbc (Wed Dec 09 2009 - 06:39:48 CST)
- Broken bonds in trajectory due to pbc (Tue Dec 08 2009 - 05:41:07 CST)
- visualisation problem with bonds and PBC (Fri Sep 26 2008 - 09:32:42 CDT)
- Radial Density (Wed Mar 19 2008 - 11:12:56 CDT)
- periodic images for trajectory (Wed Feb 27 2008 - 04:18:56 CST)
Jennifer Young
- animation from files with different numbers of atoms (Sat Jun 22 2002 - 16:21:01 CDT)
Jeremias Corradi
- Re: Installing Multiseq updates (Tue Sep 22 2009 - 14:24:43 CDT)
- Re: Installing Multiseq updates (Sat Sep 19 2009 - 11:10:11 CDT)
- Installing Multiseq updates (Thu Sep 17 2009 - 08:42:51 CDT)
Jernej Zidar
- Re: hbond analysis (Fri Oct 14 2011 - 08:19:22 CDT)
- Re: Associating .crd file extension with COR Plugin (Tue Sep 27 2011 - 22:34:53 CDT)
- Re: Problem with measuring dihedrals (Tue Sep 20 2011 - 05:28:57 CDT)
- Problem with measuring dihedrals (Tue Sep 20 2011 - 03:47:24 CDT)
- Re: DNA hairpin (Sat Aug 20 2011 - 02:39:31 CDT)
- Re: Molefacture - VMD agreement (Thu Aug 11 2011 - 01:41:08 CDT)
- Re: trajectory of water within 5 A of protein (Tue May 10 2011 - 03:09:38 CDT)
- Re: measure dipole (Tue Mar 29 2011 - 02:16:54 CDT)
- Re: CHARMM parameters for Mn 2+ ion (Fri Mar 25 2011 - 12:57:00 CDT)
- Re: Bad performance of VMD (Wed Nov 30 2005 - 04:41:24 CST)
- Bad performance of VMD (Wed Nov 23 2005 - 09:40:53 CST)
- VMD causing xorg crash (Fri Apr 01 2005 - 16:04:12 CST)
Jeroen Akershoek
- Black & white VMD in CAVE? (Thu Mar 18 2004 - 00:28:34 CST)
- NAMD, IMD, VMD and interaction (Mon Sep 29 2003 - 09:32:29 CDT)
- Re: AtomLexer/lex.yy.c error (Wed Sep 17 2003 - 01:44:46 CDT)
- Re: AtomLexer/lex.yy.c error (Tue Sep 16 2003 - 10:28:20 CDT)
- AtomLexer/lex.yy.c error (Tue Sep 16 2003 - 05:38:11 CDT)
- Menu is missing? (Tue Sep 24 2002 - 03:31:16 CDT)
- SURF_BIN and psfgen missing? (Mon Aug 19 2002 - 03:33:41 CDT)
Jerome Henin
- Re: release memory in TCL (Wed Jun 06 2007 - 17:47:26 CDT)
- Re: bug report in VMD 1.8.5 (Mon Feb 26 2007 - 19:32:29 CST)
- Re: VMD using CygWin? (Tue Dec 19 2006 - 12:05:02 CST)
- Re: problem/bug? calling hbonds within a loop over the residues (tcl) (Fri Dec 08 2006 - 10:08:32 CST)
- Re: xterm problem?? (Fri Oct 27 2006 - 13:56:32 CDT)
- Re: cutting short a DMPC bilayer in VMD (Sat Oct 07 2006 - 11:33:03 CDT)
- Re: STRIDE for a trajectory in text mode (Sun Oct 01 2006 - 23:53:13 CDT)
- Re: problem with tcl script in text mode (Wed Sep 20 2006 - 14:43:29 CDT)
- Re: puts format (Wed Sep 13 2006 - 18:01:21 CDT)
- Re: namd-l: Recentering the box on target molecule and wraping (Mon Sep 11 2006 - 12:05:04 CDT)
- Re: namd-l: CoordinateTransformation (Sun Sep 03 2006 - 17:54:17 CDT)
- Re: Video Card (Tue Nov 29 2005 - 14:00:55 CST)
Jerry Ebalunode
- RE: web script (Fri Jan 27 2006 - 12:50:20 CST)
- Re: VMD & FC 4.0 (Wed Jul 13 2005 - 15:02:05 CDT)
- Re: vmd mpg movies not working in office 2000 (Tue Jul 12 2005 - 18:33:49 CDT)
- Re: vmd mpg movies not working in office 2000 (Tue Jul 12 2005 - 18:33:19 CDT)
- GLSL or Clip plane (Sat Apr 02 2005 - 17:44:02 CST)
- Re: VMD 1.8.3 beta 1 available for testing/feedback (Mon Dec 06 2004 - 11:56:12 CST)
- Re: distribution analysis (Wed Dec 01 2004 - 10:00:26 CST)
- Re: problems with vecdist in accepting variables (Tue Sep 21 2004 - 11:27:15 CDT)
- problems with vecdist in accepting variables (Tue Sep 21 2004 - 04:38:01 CDT)
- Re: New Athlon64/Opteron AMD64/EMT64 test version... (Tue Sep 14 2004 - 13:48:44 CDT)
- multiple entry mol2 file (Tue Aug 17 2004 - 07:15:05 CDT)
- Re: CVS access is back online... (Fri Aug 06 2004 - 06:53:15 CDT)
- CVS root directory not found (Mon Aug 02 2004 - 10:57:47 CDT)
- nvidia 6106 kernel drivers and opengl (Tue Jul 13 2004 - 20:00:21 CDT)
- Re: Need a few testers for Linux version of VMD 1.8.3... (Fri Jun 11 2004 - 09:56:51 CDT)
- measuring distances in vmd tkon (Thu May 06 2004 - 15:18:00 CDT)
- Re: making ps files (Fri Apr 09 2004 - 11:19:08 CDT)
- msms and vmd on amd athlon64. (Mon Mar 15 2004 - 12:49:18 CST)
- Re: msms and socketPort (Fri Mar 12 2004 - 15:49:28 CST)
- msms and socketPort (Fri Mar 12 2004 - 07:11:43 CST)
- Re: your mail athlon 64/opteron VMD (Mon Mar 08 2004 - 17:34:48 CST)
- (no subject) (Fri Mar 05 2004 - 23:09:07 CST)
- athlon64 version of vmd (Fri Mar 05 2004 - 13:08:52 CST)
- Hybond calulator and display (Fri Jan 16 2004 - 12:24:30 CST)
- vmd and msms for mac (Mon Dec 22 2003 - 09:15:05 CST)
Jerry Kiser
- Get one of these awesome replicas (Thu Apr 24 2008 - 18:45:18 CDT)
Jerry Parks
- Interpolation in internal space (Thu Oct 13 2005 - 10:21:32 CDT)
- RMSD question (Tue Aug 16 2005 - 17:08:59 CDT)
jerry xu
- ATI radeon x300 (Fri Apr 01 2005 - 12:42:59 CST)
- Re: psfgen and xplor topology (Tue Oct 26 2004 - 15:16:26 CDT)
- Re: vmd psfgen problem with CHARMM (Thu Jul 15 2004 - 17:00:27 CDT)
- Re: vmd psfgen problem with CHARMM (Thu Jul 15 2004 - 14:50:51 CDT)
- Re: vmd psfgen problem with CHARMM (Thu Jul 15 2004 - 13:03:30 CDT)
- vmd psfgen problem with CHARMM (Thu Jul 15 2004 - 10:28:15 CDT)
Jervis Chu
- Re2: ERROR: graphics: color index value '1057' out of range (Sun Feb 27 2011 - 20:43:03 CST)
- ERROR: graphics: color index value '1057' out of range (Sun Feb 27 2011 - 08:41:00 CST)
- Re: Re: How to show dynamic bonds? (Thu Jan 06 2011 - 01:06:18 CST)
- How to show dynamic bonds? (Tue Jan 04 2011 - 01:58:39 CST)
- [Help] cross-sections (Sat Apr 03 2010 - 23:18:54 CDT)
Jesper Soerensen
- Re: AMBER prmtop and traj to pqr - radii error (Mon Oct 17 2011 - 18:58:53 CDT)
- Re: Re: amber traj to pqr - radii error (Mon Oct 10 2011 - 15:41:54 CDT)
- amber traj to pqr - radii error (Mon Oct 10 2011 - 12:42:30 CDT)
- Re: 3D Graphics (Tue Nov 25 2008 - 09:41:12 CST)
- 3D Graphics (Thu Nov 20 2008 - 05:50:51 CST)
Jesper SÃ¸rensen
- RE: SASA calculation using periodic images? (Tue May 03 2011 - 06:50:35 CDT)
- SASA calculation using periodic images? (Tue May 03 2011 - 06:14:31 CDT)
Jesper Sørensen
- RE: contacts and pbc (Wed Jul 06 2011 - 03:30:37 CDT)
- RE: contacts and pbc (Sun Jul 03 2011 - 11:30:43 CDT)
- contacts and pbc (Sun Jul 03 2011 - 08:39:02 CDT)
- showperiodic - not self? (Mon Jun 13 2011 - 12:14:44 CDT)
- RE: size for render (Tue May 24 2011 - 07:24:03 CDT)
- RE: SASA calculation using periodic images? (Thu May 05 2011 - 07:27:34 CDT)
- RE: SASA calculation using periodic images? (Tue May 03 2011 - 08:38:29 CDT)
jestin mandumpal
- Setting number of water molecules for the given box dimension (Thu Oct 18 2007 - 22:01:57 CDT)
- TIP5P (Sun Aug 26 2007 - 23:41:03 CDT)
jfgaff_at_ncsu.edu
- changing bond color (Tue Jan 06 2009 - 11:39:20 CST)
jgrime_at_uchicago.edu
- Re: VMD with LAMMPS trjaectory - help? (Thu Sep 29 2011 - 09:49:32 CDT)
- VMD with LAMMPS trjaectory - help? (Wed Sep 28 2011 - 18:20:36 CDT)
JhonY. I.
- method for user-defined coloring (Fri Jan 06 2012 - 11:53:37 CST)
- question on "Recompile VMD with larger index types" (Wed Sep 28 2011 - 00:50:33 CDT)
- problem of exceeding max atom number (Tue Sep 27 2011 - 12:51:43 CDT)
- a file for commands of console (Sat Jul 30 2011 - 08:55:14 CDT)
- load of information on B factor as independent file (Tue Dec 14 2010 - 00:55:12 CST)
- color change on atoms selected using mouse (Thu Dec 09 2010 - 10:11:35 CST)
- reading of one frame from DCD file (Tue Nov 30 2010 - 18:13:14 CST)
- reading of one frame from DCD file (Tue Nov 30 2010 - 18:12:03 CST)
- question on color assignment on trajectories (Mon Nov 15 2010 - 20:29:49 CST)
Jiabo Li
- display Gaussian cube file (Tue Jul 12 2005 - 11:24:56 CDT)
Jiajian Li
- Use "Metal complexes/FeS-clusters" in VMD paratool (Wed Jan 18 2012 - 16:01:10 CST)
Jian Dai
- volmap question (Fri May 08 2009 - 01:22:22 CDT)
Jian Zou
- Re: Slow tcl/tk script for trajectory analysis (Fri May 16 2008 - 15:23:46 CDT)
- Re: measure distance (Wed Apr 23 2008 - 09:45:58 CDT)
- Re: atomselect (Thu Apr 17 2008 - 09:06:48 CDT)
- Re: How to produce a graph as the one attached, using VMD? (Mon Sep 11 2006 - 00:15:55 CDT)
- Re: How to produce a graph as the one attached, using VMD? (Sun Sep 10 2006 - 22:55:52 CDT)
- Re: change default drawing and coloring method (Wed May 24 2006 - 20:44:06 CDT)
- Re: change default drawing and coloring method (Tue May 23 2006 - 22:16:49 CDT)
- several cmds to read structure and trajectory files (Wed Sep 14 2005 - 08:19:33 CDT)
- Re: how to start vmd with "menu tkcon on"? (Tue Sep 06 2005 - 09:55:50 CDT)
- how to start vmd with "menu tkcon on"? (Tue Sep 06 2005 - 02:37:37 CDT)
- Re: problem about hotkey for vmd-1.8.3 windows version (Mon Jul 25 2005 - 20:47:00 CDT)
- problem about hotkey for vmd-1.8.3 windows version (Mon Jul 25 2005 - 09:44:12 CDT)
Jiancong Xu
- mol clipplane (Fri Jul 02 2004 - 14:48:26 CDT)
Jianhui Tian
- residue index problem (Wed Jun 24 2009 - 15:51:54 CDT)
- Re: Warning: no convergence in alignment (Wed Oct 29 2008 - 15:16:08 CDT)
- Re: Warning: no convergence in alignment (Mon Oct 27 2008 - 14:01:21 CDT)
- Warning: no convergence in alignment (Fri Oct 24 2008 - 17:02:08 CDT)
- Re: problem using pbc wrap: broken molecule (Fri Aug 01 2008 - 10:52:45 CDT)
- problem using pbc wrap: broken molecule (Thu Jul 31 2008 - 20:32:47 CDT)
- Calculate density (Mon Nov 19 2007 - 15:21:20 CST)
- Re: Problem with periodic condition (Mon Apr 30 2007 - 15:57:30 CDT)
- Problem with periodic condition (Fri Apr 27 2007 - 13:33:26 CDT)
- Re: tcl code atomselect problem in analysis (Mon Apr 23 2007 - 10:32:12 CDT)
- tcl code atomselect problem in analysis (Mon Apr 23 2007 - 09:24:48 CDT)
- Re: Can anyone help me out with this script (Sat Mar 31 2007 - 19:50:43 CDT)
- Can anyone help me out with this script (Fri Mar 30 2007 - 14:49:45 CDT)
- mol load and mol addfile (Mon Mar 26 2007 - 15:43:20 CDT)
- Re: export Ramachandran datas (Thu Mar 15 2007 - 17:11:27 CDT)
- export Ramachandran datas (Thu Mar 15 2007 - 16:16:21 CDT)
- Calculate End-End distance for DCD (Tue Mar 13 2007 - 15:17:00 CDT)
- Question about RDF of VMD (Sat Feb 24 2007 - 20:33:13 CST)
Jianping Lin
- pops/popc lipid bilayer (Wed Mar 11 2009 - 19:32:42 CDT)
- Charm force field for POPS lipid (Fri Mar 06 2009 - 15:56:34 CST)
- Script for calculating hydrogen-bonding energy (Thu Mar 05 2009 - 19:19:28 CST)
- Re: How to convert DCD file into Amber trajectory file in vmd (Wed Mar 04 2009 - 11:41:14 CST)
- How to convert DCD file into Amber trajectory file in vmd (Tue Mar 03 2009 - 17:30:33 CST)
- MM/PBSA in VMD (Thu Feb 26 2009 - 12:12:46 CST)
- How to get rid of default patch for NTER and CTER (Sun Jan 18 2009 - 15:45:34 CST)
Jiao, Dian NMN (-EXP)
- Re: how to load Orient package in VMD (Wed Aug 24 2011 - 16:55:23 CDT)
- how to load Orient package in VMD (Wed Aug 24 2011 - 15:24:42 CDT)
Jiapu.Zhang_at_csiro.au
- RE: How to produce a graph as the one attached, using VMD? (Sun Sep 10 2006 - 23:49:37 CDT)
- How to produce a graph as the one attached, using VMD? (Sun Sep 10 2006 - 21:32:20 CDT)
Jill Vickery
- Left Right eye stereo flip in Crystal Eyes (Wed Sep 14 2005 - 14:04:52 CDT)
- Stereo on an SGI Octane2 using Crystal Eyes (Mon Dec 27 2004 - 12:50:09 CST)
- Stereo on Mac OX 10.3.3 (Thu May 06 2004 - 16:50:27 CDT)
- Save_state and Load_state (Thu May 01 2003 - 12:05:00 CDT)
- PNY Quadro4 980XGL Card (Wed Feb 05 2003 - 11:47:55 CST)
- Stereo quality and Save State Problems (Fri Nov 08 2002 - 14:07:46 CST)
- High-Res and Eye 3D glasses and SynthaGram Monitors (Wed Sep 11 2002 - 13:53:44 CDT)
- SPACEBALLS (Wed Aug 21 2002 - 17:19:08 CDT)
- Charge coloring and Stereo hot keys (Fri Aug 16 2002 - 17:48:55 CDT)
- Windows XP and Eye3D glasses (Tue Aug 13 2002 - 11:53:48 CDT)
- Joysticks for VMD on Windows XP (Mon Aug 12 2002 - 17:46:29 CDT)
Jim Caldwell
- residue labels in vmd (Wed Mar 05 2003 - 18:59:03 CST)
Jim Fonseca
- video memory and volumetric data (Fri Sep 28 2007 - 15:15:02 CDT)
- Re: surface max_density error (Tue Apr 03 2007 - 15:38:41 CDT)
- surface max_density error (Tue Apr 03 2007 - 11:25:49 CDT)
- multiple dx frames (Wed Feb 28 2007 - 13:49:12 CST)
- volume slices (Sun Feb 04 2007 - 14:32:11 CST)
Jim Kress
- RE: Movie making with smoothed trajectories (Thu May 24 2012 - 13:38:23 CDT)
- Movie making with smoothed trajectories (Thu May 24 2012 - 11:02:18 CDT)
Jim Nettles
- Re: Problem using ied.py (Fri Mar 18 2005 - 12:17:25 CST)
- Re: Problem using ied.py (Thu Mar 03 2005 - 16:45:44 CST)
- Re: handling electron density maps (.mrc and .map files) (Sat Dec 18 2004 - 18:20:39 CST)
- Re: Difficulties using Crystal Eyes 3 (Thu Dec 02 2004 - 14:09:58 CST)
- Re: python2.3 and vmd (Sun Oct 24 2004 - 08:21:11 CDT)
- Re: Apple VMD not showing gro file properly (Thu Feb 12 2004 - 23:25:20 CST)
- Densities for protein and ligand (Wed Feb 04 2004 - 11:52:31 CST)
Jim Parker
- [Solved] Re: Nucleic acid topology file for PSF generation (Fri Dec 04 2009 - 22:13:50 CST)
- Nucleic acid topology file for PSF generation (Thu Dec 03 2009 - 21:56:00 CST)
- Re: Install VMD binary with CUDA, CUDA card detected but then error "no CUDA-capable device is available"--Solved (Sun Oct 11 2009 - 21:31:05 CDT)
- Install VMD binary with CUDA, CUDA card detected but then error "no CUDA-capable device is available" (Thu Sep 17 2009 - 19:33:51 CDT)
- Re: Install VMD with plugins to NAMD--solved (Thu Sep 17 2009 - 19:10:07 CDT)
- Re: Install VMD with plugins to NAMD (Wed Sep 16 2009 - 23:29:11 CDT)
- Re: Install VMD with plugins to NAMD (Wed Sep 16 2009 - 22:53:24 CDT)
- Install VMD with plugins to NAMD (Wed Sep 16 2009 - 21:44:31 CDT)
Jim Pfaendtner
- Re: VMD on Cray/CNL (Fri May 01 2009 - 07:56:02 CDT)
- VMD on Cray/CNL (Fri May 01 2009 - 01:03:07 CDT)
- saving trajectories from the command line (Thu Oct 16 2008 - 07:28:00 CDT)
- building an uncoming sulfide bridge (Thu Jul 10 2008 - 08:56:32 CDT)
- Re: animate read command (Tue Feb 05 2008 - 13:55:29 CST)
- help with animate read command (Tue Feb 05 2008 - 11:26:47 CST)
- Re: changing the order of atom selections / alignment issue (Mon Aug 27 2007 - 10:58:31 CDT)
- changing the order of atom selections / alignment issue (Fri Aug 24 2007 - 17:58:51 CDT)
- Re: automating graphic representations (Fri Aug 24 2007 - 13:55:00 CDT)
- automating graphic representations (Wed Aug 22 2007 - 13:37:41 CDT)
- Re: Re: help with badwater script (Tue Aug 14 2007 - 15:29:12 CDT)
- Re: help with badwater script (Mon Aug 13 2007 - 18:38:12 CDT)
- What does Stride need to draw SS? (Thu Aug 09 2007 - 16:49:58 CDT)
- badwater script - help (Thu Jul 26 2007 - 15:18:48 CDT)
Jim Phillips
- Re: [Stefan_Franzen@ncsu.edu: Patch for deoxy and dideoxy nucleotides] (Wed Feb 15 2012 - 10:24:11 CST)
- Re: psfgen: error processing bonds (Fri Apr 29 2011 - 08:12:56 CDT)
- Re: generating .xsc files using periodic information (Tue Apr 26 2011 - 23:16:46 CDT)
- Re: psfgen: error processing bonds (Tue Apr 26 2011 - 14:21:01 CDT)
- Re: generating .xsc files using periodic information (Tue Apr 26 2011 - 11:35:43 CDT)
- Re: psfgen: error processing bonds (Tue Apr 26 2011 - 11:43:56 CDT)
- Re: Fwd: [multiple topology files and resetpsf] (Tue Feb 08 2011 - 14:49:48 CST)
- Re: a detail about PSFGENv1.4 (Wed Feb 02 2011 - 22:45:23 CST)
- Re: Fwd: autopsf error: failed on end of segment (Tue Dec 28 2010 - 17:03:41 CST)
- Re: Using LES with solvated, ionized protein (Tue Dec 28 2010 - 16:52:12 CST)
- Re: why atom positions are reset after readpsf, coordpdb commands? (Fri Dec 17 2010 - 10:58:39 CST)
- Re: delatom usage - no such segment? (Mon Dec 17 2007 - 11:50:12 CST)
- Re: Rebuilding lipid from headgroup coordinates only using psfgen, some atoms put on origin (Sat Sep 08 2007 - 21:56:51 CDT)
- Re: python and C++ extensions (Fri Jul 27 2007 - 16:56:00 CDT)
- Re: Wrap only whole molecules (Fri Jul 27 2007 - 16:48:26 CDT)
- Re: PME units (Tue Oct 03 2006 - 14:47:35 CDT)
- Re: namd-l: Re: Angles and dihedral generation (Mon Sep 04 2006 - 16:44:44 CDT)
- Re: CoordinateTransformation (Sun Sep 03 2006 - 21:59:46 CDT)
- Re: Angles and dihedral generation (Sat Sep 02 2006 - 15:25:12 CDT)
- NAMD 2.6 released (Thu Aug 31 2006 - 17:13:40 CDT)
- NAMD 2.6b2 released (Sun Aug 20 2006 - 15:43:38 CDT)
- RE: Uncharged terminal ends? (Mon Nov 28 2005 - 19:14:35 CST)
- Re: problem with writepdb (Mon Oct 24 2005 - 17:33:23 CDT)
- Mac Stereo 3D Displays & Equipment (Wed Oct 19 2005 - 18:29:39 CDT)
- Re: Warining when generating psf file (Wed Oct 19 2005 - 18:15:26 CDT)
- Re: PME values (Wed Aug 24 2005 - 15:27:43 CDT)
- Re: namd-l: volume from VMD and NAMD different? (Fri Aug 05 2005 - 17:46:25 CDT)
- Re: namd-l: volume from VMD and NAMD different? (Fri Aug 05 2005 - 17:34:45 CDT)
- NAMD 2.6b1 Released (Tue Aug 02 2005 - 12:31:02 CDT)
- Re: auto none /psfgen (Thu Jun 30 2005 - 10:40:34 CDT)
- Re: psfgen deleting water molecules (Fri Jun 24 2005 - 15:51:37 CDT)
- RE: Problems with Psf using Charmm format, solvate and autoionize (Thu Jun 09 2005 - 14:02:18 CDT)
- Re: Solvate with LES (Locally Enhanced Sampling) pdb does not work (Thu Jun 09 2005 - 13:41:38 CDT)
- Re: lipid definition (Thu May 26 2005 - 13:11:08 CDT)
- Re: bonding across periodic boundary (Tue Apr 12 2005 - 13:02:10 CDT)
- Re: (Thu Apr 07 2005 - 11:10:45 CDT)
- Re: psfgen and xplor topology (Tue Oct 26 2004 - 13:31:45 CDT)
- Re: psfgen and xplor topology (Tue Oct 26 2004 - 10:32:26 CDT)
- Re: Flexible Water molecules (Fri Sep 24 2004 - 19:02:37 CDT)
- Re: your mail (Thu Jul 29 2004 - 10:45:14 CDT)
- Re: changing the representation of all loaded molecules (Thu May 20 2004 - 15:38:37 CDT)
- Re: a question in using PSFGEN (Tue Apr 27 2004 - 11:04:31 CDT)
- Re: Re: how to make unique chain pdb identifier of virus capsid 60 mer? (Mon Apr 19 2004 - 11:24:14 CDT)
- Re: repitition of residue numbers in LIPIDS (Tue Feb 17 2004 - 17:14:42 CST)
- Re: repitition of residue numbers in LIPIDS (Mon Feb 16 2004 - 17:55:50 CST)
- Re: patch in psfgen - ionic interaction and hydrogen bond (Mon Jan 26 2004 - 17:41:55 CST)
- Re: multiple id's (Mon Jan 19 2004 - 06:50:12 CST)
- Re: Molecular Simulation using PHANToM Haptic (Mon Nov 24 2003 - 18:24:47 CST)
- Re: uninitialized coordinates (Tue Nov 11 2003 - 17:26:02 CST)
- Re: aminoacid mutation (Tue Oct 28 2003 - 11:08:05 CST)
- NAMD-L mailing list (Tue Oct 07 2003 - 15:15:41 CDT)
- Re: convert pdb to psf (Tue Sep 30 2003 - 12:48:26 CDT)
- NAMD 2.5 Released (Mon Sep 29 2003 - 14:02:48 CDT)
- NAMD 2.5b3 Released (Fri Sep 19 2003 - 18:02:58 CDT)
- NAMD 2.5b2 Released (Mon Sep 15 2003 - 19:53:01 CDT)
- Re: Pressure and Gpressure output in NAMD (Wed Aug 06 2003 - 15:23:41 CDT)
- Re: NAMD IMD large protein model (Thu Jun 12 2003 - 11:32:45 CDT)
- Re: psfgen error with alias residue (Mon Jun 09 2003 - 09:33:06 CDT)
- Re: [OT] pdb files with lots of residues (Thu Jan 30 2003 - 09:21:37 CST)
- NAMD 2.4 Released (Mon Mar 11 2002 - 14:24:39 CST)
- Upcoming NAMD Workshop (Tue Feb 26 2002 - 15:24:32 CST)
- NAMD 2.4b2 Release Announcement (Fri Feb 22 2002 - 12:56:35 CST)
- NAMD 2.4b1 released (Mon Jan 28 2002 - 16:44:30 CST)
- Re: display panel only showed 1/4 of its area on the screen. (Sun Jan 20 2002 - 13:59:26 CST)
- Re: 'wrap' any kind of solvent (Mon Dec 03 2001 - 11:14:50 CST)
- NAMD 2.3 Release Announcement (Thu Aug 02 2001 - 14:36:22 CDT)
- Re: switching off the location axes (Fri Mar 09 2001 - 09:39:39 CST)
- NAMD 2.3b1 Release (Fri Feb 23 2001 - 11:01:55 CST)
- Announcing MDSalon! (Tue Nov 21 2000 - 15:15:21 CST)
- NAMD 2.2 Release Announcement (Fri Sep 29 2000 - 18:32:22 CDT)
- NAMD 2.2b1 Release Announcement (Tue Sep 05 2000 - 17:39:24 CDT)
Jim Shepherd
- Re: LAMMPS visualization (Thu Nov 11 2004 - 17:30:26 CST)
- Re: Amber periodic images (Thu Apr 29 2004 - 13:41:23 CDT)
- Bond display and Periodic Boxes (Mon Apr 26 2004 - 14:19:02 CDT)
jim_at_wellyes.com
- Sybyl trajectory (Thu Sep 15 2005 - 14:10:23 CDT)
Jimmie Corona
- Rolex replica is a ultimate gift (Tue Apr 29 2008 - 08:25:38 CDT)
jin
- Question about using psfgen on protein 4HVP (Tue Oct 26 2004 - 11:39:16 CDT)
Jin Wen
- Re: installation problem (Wed Dec 23 2009 - 14:13:05 CST)
- installation problem (Tue Dec 22 2009 - 17:46:43 CST)
Jindal Shah
- Re: error loading dcd file on Windows XP (Fri Mar 17 2006 - 16:36:58 CST)
- Re: error loading dcd file on Windows XP (Thu Mar 16 2006 - 18:44:30 CST)
- error loading dcd file on Windows XP (Thu Mar 16 2006 - 15:18:24 CST)
- contact map definition (Mon Mar 13 2006 - 11:21:20 CST)
- Generating more than 100,000 water molecules (Tue Jan 24 2006 - 15:06:15 CST)
- PSF file (Tue Jan 17 2006 - 13:21:49 CST)
- Video Card (Tue Nov 29 2005 - 10:24:35 CST)
- Loading files all at once time to create movie (Mon Nov 21 2005 - 12:43:48 CST)
- Re: Analyzing pdb files remotely with VMD installed locally (Wed Sep 07 2005 - 20:09:32 CDT)
- Re: Analyzing pdb files remotely with VMD installed locally (Wed Sep 07 2005 - 11:54:00 CDT)
- Analyzing pdb files remotely with VMD installed locally (Wed Sep 07 2005 - 11:25:50 CDT)
- Dihedral angle calculations for alanine dipeptide (Tue Sep 06 2005 - 12:36:42 CDT)
- Re: No bonds (Wed Aug 24 2005 - 11:35:11 CDT)
- No bonds (Wed Aug 24 2005 - 10:06:09 CDT)
- Re: Script for calculating energy of a water molecule (Wed Aug 17 2005 - 17:07:12 CDT)
- Script for calculating energy of a water molecule (Wed Aug 17 2005 - 11:41:23 CDT)
- Re: VMD running slow (Mon Jul 25 2005 - 14:02:11 CDT)
- Re: VMD running slow (Mon Jul 25 2005 - 12:58:51 CDT)
- VMD running slow (Mon Jul 25 2005 - 12:20:58 CDT)
Jing
- Re: vmd installation with Mesa installed in a non-standard location (Thu Jun 02 2005 - 23:00:34 CDT)
- vmd installation with Mesa installed in a non-standard location (Wed Jun 01 2005 - 23:53:37 CDT)
Jinhua Zhang
- VMD crashed due to: vmd_LINUXAMD64: indirect_vertex_array.c:659: emit_DrawArrays_old: Assertion `elements_per_request >= count' failed (Mon Jun 19 2006 - 13:28:18 CDT)
jirasak wong-ekkabut
- PMEpot units (Thu Oct 30 2008 - 15:10:05 CDT)
jiwu liu
- Re: vmd command delay (Tue Nov 06 2007 - 20:02:27 CST)
- vmd command delay (Mon Nov 05 2007 - 16:55:50 CST)
- sequential multiple structures (Thu Sep 28 2006 - 17:50:15 CDT)
- can VMD show artificial bond info? (Wed Oct 19 2005 - 18:04:31 CDT)
jj mm
- Rv: Re: Phonon spectrum and VACF (Tue Dec 14 2010 - 12:09:38 CST)
- Phonon spectrum and VACF (Thu Dec 09 2010 - 03:11:03 CST)
jmp17_at_duke.edu
- quick help (Wed Oct 02 2002 - 00:48:31 CDT)
jnsong
- Re: how to get pqr format file with catdcd (Wed Jun 22 2011 - 02:22:59 CDT)
- Re: how to get pqr format file with catdcd (Mon Jun 20 2011 - 22:00:33 CDT)
- how to get pqr format file with catdcd (Sat Jun 18 2011 - 01:25:15 CDT)
- Re: Do psf generated by psfgen and psf produced by "$sel writepsf" function in VMD have different impact on MD simulation using NAMD? (Tue May 17 2011 - 21:42:42 CDT)
- Re: Do psf generated by psfgen and psf produced by "$sel writepsf" function in VMD have different impact on MD simulation using NAMD? (Tue May 17 2011 - 21:32:52 CDT)
- Do psf generated by psfgen and psf produced by "$sel writepsf" function in VMD have different impact on MD simulation using NAMD? (Tue May 17 2011 - 08:54:54 CDT)
- Re: Problem with using bigdcd.tcl (Wed Mar 23 2011 - 00:06:00 CDT)
- Problem with using bigdcd.tcl (Sun Mar 20 2011 - 22:38:01 CDT)
- Problem with using bigdcd.tcl (Tue Mar 15 2011 - 21:42:10 CDT)
jo hanna
- Further angle question (Sat Sep 08 2007 - 09:16:15 CDT)
- Computing angles (Fri Sep 07 2007 - 17:18:33 CDT)
jo333_4_at_lawrence-lca.co.uk
- Inspired Internet Business Opportunity! (Wed Sep 06 2000 - 13:38:24 CDT)
Joaim Swedberg
- How to disable CUDA in VMD-1.9? (Wed Nov 30 2011 - 20:29:48 CST)
- Patching Glu/N-terminus peptide bond type bond (Wed Nov 16 2011 - 17:41:38 CST)
Joakim Swedberg
- N-methylated amino acid topologies (Wed May 02 2012 - 19:20:41 CDT)
- Selecting CUDA devices in VMD 1.8.7 (Tue May 11 2010 - 17:49:54 CDT)
Joan Winslow
- Get your w4tch now Villa (Thu Jul 24 2008 - 04:40:10 CDT)
Joanne Hanna
- Making a Movie (Tue Jun 20 2006 - 09:38:06 CDT)
Joaquim Rui de Castro Rodrigues
- RE: Problem with hydration script (Thu Apr 19 2012 - 14:23:33 CDT)
Joaquim Rui Rodrigues
- Re: select atoms (Mon Mar 02 2009 - 04:57:41 CST)
- Re: Problem with Install (Fri Jan 16 2009 - 06:59:15 CST)
- Re: atom selection (Wed Dec 03 2008 - 11:44:55 CST)
- Re: change the radius of atoms (Thu Oct 23 2008 - 05:40:59 CDT)
- suggested graphic card for Mac Pro (Thu Oct 02 2008 - 12:09:32 CDT)
- Re: Create atom selection from list of integers (Mon Jun 02 2008 - 12:10:28 CDT)
Jocelyn Rodgers
- outputing secondary structure from timeline (Mon Jan 23 2006 - 10:29:30 CST)
Joe Huang
- Re: Molecular dynamics order parameters (Tue May 20 2003 - 17:41:59 CDT)
- Re: Memory problems using the "move" command inside a loop! (Fri May 02 2003 - 16:23:54 CDT)
- Memory problems with TCL scripts in VMD. (Thu Mar 20 2003 - 13:02:48 CST)
- Question about dihedral angles in VMD. (Wed Aug 07 2002 - 15:01:06 CDT)
- Re: GnuPlot works! (Mon Apr 22 2002 - 18:10:45 CDT)
- How to plot the data created by VMD analysis script - difference_matrix? (Thu Apr 18 2002 - 14:22:40 CDT)
Joe Janicki
- VolMap Tool Question (Mon Jun 13 2011 - 13:36:18 CDT)
Joe Zhou
- Re: passive stereo setup on linux (Thu Mar 04 2004 - 12:55:31 CST)
- Re: passive stereo setup on linux (Wed Mar 03 2004 - 14:47:53 CST)
- Re: passive stereo setup on linux (Tue Mar 02 2004 - 12:28:17 CST)
- passive stereo setup on linux (Mon Mar 01 2004 - 16:18:06 CST)
Joey Vella
- Viewing System of Molecules where coordinates are in text file. (Thu Dec 01 2011 - 20:43:45 CST)
Johannes Müllegger
- Re: how to export into postscript with MultiPlot in tcl mode? (Mon Jun 23 2008 - 11:23:24 CDT)
- Re: tcl script memory problem - NOT in atomselect (Tue Feb 19 2008 - 11:19:04 CST)
- tcl script memory problem - NOT in atomselect (Mon Feb 18 2008 - 21:45:42 CST)
- measure imprp - input order of atoms (Fri Aug 24 2007 - 14:51:00 CDT)
- Re: sidechain atomselection (Mon Sep 25 2006 - 13:10:48 CDT)
- how to run a plugin from the command line? (Mon Sep 11 2006 - 18:25:03 CDT)
- Re: spikes in trajectory, problem with the alignment of frames (Thu Aug 24 2006 - 13:50:20 CDT)
- spikes in trajectory, problem with the alignment of frames (Wed Aug 23 2006 - 19:25:58 CDT)
Johannes von Langen
- Re: stereo on linux: DTI monitors? (Mon Aug 26 2002 - 02:57:32 CDT)
- Re: Linux/Intel configuration for processing large trajectory file (Mon Jul 22 2002 - 05:26:19 CDT)
- vmd1.8a16 - no stereo on linux any more (Mon Jun 24 2002 - 06:47:02 CDT)
- Re: problem with amber 6 restart files (parm and rst) (Tue Jun 11 2002 - 03:57:29 CDT)
- vmd-1.8a10; psfgen; AMBER-trajectories; strange bondlengths (Tue Jun 11 2002 - 03:17:31 CDT)
John
- exclude residues (Thu Jun 30 2005 - 11:42:09 CDT)
John C. H. Chao
- RE: Manunlly Assign Secondary Structure (May Not Be Realistic) (Fri Jul 03 2009 - 04:42:10 CDT)
- Manunlly Assign Secondary Structure (May Not Be Realistic) (Thu Jul 02 2009 - 06:00:07 CDT)
John Duff
- Re: problem compiling on redhat 7.0 (Sun Oct 08 2000 - 14:52:46 CDT)
- problem compiling on redhat 7.0 (Sat Oct 07 2000 - 00:57:48 CDT)
- parallel rendering across clusters? (Fri Sep 15 2000 - 16:16:16 CDT)
- Re: problem with vmd/namd connection on linux (Wed Apr 19 2000 - 10:25:46 CDT)
- problem with vmd/namd connection on linux (Tue Apr 18 2000 - 17:35:03 CDT)
John E. Kerrigan
- Re: can I combine several dcd files into one dcd file? (Wed Jan 05 2005 - 12:52:38 CST)
John Eargle
- Re: custom db in Multiseq (Fri May 18 2007 - 14:02:09 CDT)
- Re: custom db in Multiseq (Fri May 18 2007 - 11:32:51 CDT)
John Hondroulis
- Mailing List (Wed Jan 08 1997 - 14:30:26 CST)
John Kerrigan
- Re: Crosseye stereo image rendering (Tue Feb 01 2005 - 18:20:27 CST)
John M. Kolinski
- XYZ file to video (Wed Jul 28 2004 - 08:26:10 CDT)
John M. Robinson
- pytjhon (Mon Jan 23 2006 - 14:06:12 CST)
John R. Kitchin
- python support and pipes in vmd (Tue Sep 30 2003 - 13:52:00 CDT)
John Robert Kitchin
- RE: accessing VMD help (Fri Oct 31 2003 - 09:22:10 CST)
John Robinson
- peptide builder (Fri Apr 21 2006 - 15:19:01 CDT)
John Stone
- Announce: VMD 1.4 beta 4 (Wed Dec 22 1999 - 16:40:53 CST)
- Re: Pegasus Technologies FreeD drivers? (Wed Dec 08 1999 - 10:08:33 CST)
- Announce: VMD 1.4 beta 3 (Thu Nov 18 1999 - 16:08:16 CST)
- Re: output (Mon Nov 15 1999 - 10:40:20 CST)
- Re: question (Mon Nov 15 1999 - 09:16:50 CST)
- Re: rmsd crashes vmd 1.3 (Tue Nov 09 1999 - 21:59:58 CST)
- Announce: VMD 1.4 beta 2 (Tue Nov 09 1999 - 15:19:35 CST)
- Re: rmsd crashes vmd (Sat Nov 06 1999 - 00:17:28 CST)
- Re: Problems with Charmm dcd (Wed Oct 27 1999 - 09:23:35 CDT)
- Re: windows 98/ vmd14a2.exe & vmd14b1.exe (Tue Oct 26 1999 - 15:35:34 CDT)
- Re: windows 98/ vmd14a2.exe & vmd14b1.exe (Fri Oct 22 1999 - 13:12:52 CDT)
- Re: SEGMENT ID (Fri Oct 22 1999 - 09:21:01 CDT)
- Announce: VMD 1.4 beta 1 (Mon Oct 04 1999 - 17:07:49 CDT)
- New VMD development pages (Mon Sep 27 1999 - 10:42:25 CDT)
- Re: VMD and 3Dfx Glide (Tue Aug 31 1999 - 09:16:59 CDT)
- Re: VMD and 3Dfx Glide (Mon Aug 30 1999 - 09:36:38 CDT)
- VMD 1.4 Alpha 5 (Windows+Unix) is available. (Tue Aug 17 1999 - 00:55:58 CDT)
- VMD 1.4 Alpha 4 (Windows) is available. (Mon Aug 09 1999 - 17:00:50 CDT)
- VMD 1.4 Alpha 3 (Windows+Unix) is available. (Tue Jul 27 1999 - 15:37:46 CDT)
- VMD 1.4 Alpha 2 (Windows) is available. (Fri Jun 18 1999 - 16:24:12 CDT)
- Re: No Display when running vmd 1.3 (Thu May 27 1999 - 16:00:02 CDT)
- 1999 VMD User Survey Report (Mon May 24 1999 - 15:21:56 CDT)
- VMD 1.4 Alpha 1 (Windows) is available. (Wed May 19 1999 - 17:21:47 CDT)
- VMD 1.3 Release (Mon Apr 05 1999 - 16:46:35 CDT)
- Re: 1.3b2 (Wed Mar 03 1999 - 12:23:29 CST)
- VMD 1.3 Beta 2 release ... ¶¬ (Wed Feb 24 1999 - 13:38:37 CST)
- VMD 1.3 Beta 1 release ... (Wed Feb 17 1999 - 02:08:02 CST)
- Re: Stereo on SGI Octane 250HMz R10000, IRIX 6.5 (Wed Feb 17 1999 - 00:43:56 CST)
- Re: Stereo on SGI Octane 250HMz R10000, IRIX 6.5 (Fri Feb 12 1999 - 09:30:37 CST)
- VMD 1.3 Alpha 2 release... (Mon Jan 25 1999 - 20:57:45 CST)
- Re: convex hull and VMD (Mon Sep 28 1998 - 17:05:51 CDT)
- Re: Transparent graphics (Fri Sep 18 1998 - 11:17:16 CDT)
- Re: problems with MSMS (Sat Aug 15 1998 - 22:00:51 CDT)
- VMD 1.2b3 is available! (Fri Jun 26 1998 - 12:57:17 CDT)
- Re: RMSF and bigdcd (Fri May 25 2012 - 14:34:03 CDT)
- Re: vmd ATI card (Fri May 25 2012 - 13:05:20 CDT)
- Re: vmd on Ubuntu: tcl howto (Thu May 24 2012 - 10:45:46 CDT)
- Re: Regarding the Use of STL Files as Boundary Features (Thu May 24 2012 - 10:32:08 CDT)
- Re: RMSF and bigdcd (Tue May 22 2012 - 18:02:31 CDT)
- Re: VMD1.9.1 is crashing my system (Thu May 10 2012 - 16:38:09 CDT)
- Re: flashing the VMD (Wed May 09 2012 - 13:17:42 CDT)
- Re: flashing the VMD (Wed May 09 2012 - 11:13:43 CDT)
- Re: flashing the VMD (Wed May 09 2012 - 10:30:23 CDT)
- Re: flashing the VMD (Wed May 09 2012 - 10:11:38 CDT)
- Re: strange coloring (Mon May 07 2012 - 16:19:34 CDT)
- Re: strange coloring (Mon May 07 2012 - 15:39:26 CDT)
- Re: .trr files slow to load (Mon May 07 2012 - 12:40:13 CDT)
- Re: Save/restore display parameters (Mon May 07 2012 - 10:40:59 CDT)
- Re: Fwd: VMD Stereo does not work Quadbufferd (Mon May 07 2012 - 03:03:38 CDT)
- Re: Movie Plugin (Mon Apr 23 2012 - 15:52:40 CDT)
- Re: Anaglyph stereo with other colors (Mon Apr 23 2012 - 15:49:37 CDT)
- Re: Anaglyph stereo with other colors (Mon Apr 23 2012 - 15:40:19 CDT)
- Re: openGL x,y position (Sun Apr 22 2012 - 22:56:02 CDT)
- Re: Anaglyph stereo with other colors (Fri Apr 20 2012 - 17:27:39 CDT)
- Re: HOOMD problems (Fri Apr 20 2012 - 15:51:16 CDT)
- Re: segmentation fault with NAMDenergy (Thu Apr 19 2012 - 20:59:32 CDT)
- Re: Units of Isovalue Slider in Isovalue Drawing Method (Wed Apr 18 2012 - 20:49:08 CDT)
- Re: align electron density map onto simulated structure (with different center) (Tue Apr 17 2012 - 00:13:31 CDT)
- Re: lipid order parameter (Tue Apr 17 2012 - 00:01:18 CDT)
- Re: Using Measure SASA in NAMD Simulation (Mon Apr 16 2012 - 23:39:24 CDT)
- Re: Drawing a high resolution transparent or translucent sphere (Wed Apr 11 2012 - 21:26:58 CDT)
- Re: Mac OS compilation? what could be going wrong? (Wed Apr 11 2012 - 14:33:34 CDT)
- Re: Average angle between the lipid dipole vector and the bilayer normal. (Wed Apr 11 2012 - 14:06:52 CDT)
- Re: Mac OS compilation? what could be going wrong? (Wed Apr 11 2012 - 14:15:59 CDT)
- Re: an old question (Wed Apr 11 2012 - 13:57:49 CDT)
- Re: Mac OS compilation? what could be going wrong? (Wed Apr 11 2012 - 10:51:01 CDT)
- Re: Problems with for loop (Tue Apr 10 2012 - 14:15:07 CDT)
- Re: an old question (Tue Apr 10 2012 - 14:11:51 CDT)
- Re: an old question (Mon Apr 09 2012 - 23:49:11 CDT)
- Re: VMD QUESTION( Movie making ) (Mon Apr 09 2012 - 19:22:11 CDT)
- Re: an old question (Mon Apr 09 2012 - 10:30:33 CDT)
- Re: Mac OS compilation? what could be going wrong? (Mon Apr 09 2012 - 10:11:17 CDT)
- Re: Regarding saving data (Wed Apr 04 2012 - 15:10:03 CDT)
- Re: FW: How to set VMD_Plugin_path? (Mon Apr 02 2012 - 10:58:28 CDT)
- Re: Is there any way to stop the display of bonds for bonded atoms on opposite sides of a periodic boundary without unwrapping? (Thu Mar 29 2012 - 14:44:28 CDT)
- Re: Possible MPI code problem (and fix) (Thu Mar 29 2012 - 09:58:15 CDT)
- Re: autopsf: can't read "logfilename" (Thu Mar 29 2012 - 10:44:28 CDT)
- Re: Can't set graphics window position to 0,0 (Thu Mar 29 2012 - 10:20:27 CDT)
- Re: COORDINATES extraction of molecule's centers of mass (Wed Mar 28 2012 - 11:40:54 CDT)
- Re: turns, using Stride (Wed Mar 21 2012 - 13:12:45 CDT)
- Re: Define "color Element" through rgb values (Wed Mar 21 2012 - 11:34:24 CDT)
- Re: bond cutoff (Wed Mar 21 2012 - 11:29:49 CDT)
- Re: lib/stride/README (Wed Mar 21 2012 - 11:13:32 CDT)
- Re: plugins/hesstrans/Makefile recurses on CXXFLAGS (Wed Mar 21 2012 - 11:15:38 CDT)
- Re: starting tkcon (Wed Mar 21 2012 - 11:09:16 CDT)
- Re: exporting marching cubes data from QuickSurf (Wed Mar 21 2012 - 10:39:17 CDT)
- Re: RMSD (Sun Mar 18 2012 - 12:26:39 CDT)
- Re: writepdb, wrong lines in output (Wed Mar 14 2012 - 12:31:18 CDT)
- Re: tutorial on inorganic builder (Tue Mar 13 2012 - 14:52:28 CDT)
- Re: load propka3.1 results error (Mon Mar 12 2012 - 16:43:21 CDT)
- Re: make movies with user-defined script (Mon Mar 12 2012 - 15:53:06 CDT)
- Re: load propka3.1 results error (Mon Mar 12 2012 - 15:44:58 CDT)
- Re: load propka3.1 results error (Mon Mar 12 2012 - 15:36:25 CDT)
- Re: make movies with user-defined script (Fri Mar 09 2012 - 20:45:15 CST)
- Re: make movies with user-defined script (Fri Mar 09 2012 - 16:27:43 CST)
- Re: VMD Display Error - Detected X11 'Composite' extension (Thu Mar 08 2012 - 22:29:26 CST)
- Re: make movies with user-defined script (Thu Mar 08 2012 - 12:12:06 CST)
- Re: Individual components of RMSD? (Thu Mar 08 2012 - 12:15:47 CST)
- Re: Bug in VMD main? (Sat Mar 03 2012 - 12:37:43 CST)
- Re: exporting marching cubes data from QuickSurf (Fri Mar 02 2012 - 15:47:41 CST)
- Re: exporting marching cubes data from QuickSurf (Thu Mar 01 2012 - 22:18:48 CST)
- Re: measure sasa (Thu Mar 01 2012 - 10:06:21 CST)
- Re: Adsorption VMD Tcl script error (Wed Feb 29 2012 - 14:05:21 CST)
- Re: possible memory leak with pbc wrap (Tue Feb 28 2012 - 14:20:14 CST)
- Re: Input selection as xyz co-ordinates (Wed Feb 22 2012 - 22:43:52 CST)
- Re: [request] Best practices for rendering frames and making movies (Wed Feb 22 2012 - 11:12:27 CST)
- Re: SASA -tcl script (Tue Feb 21 2012 - 14:31:09 CST)
- Re: how to add spring between two atoms (Mon Feb 20 2012 - 13:17:23 CST)
- Re: quicksurf and PBC (Sat Feb 18 2012 - 11:14:25 CST)
- Re: trajector@VMD (Fri Feb 17 2012 - 10:17:12 CST)
- Re: pdb reader/writer appears to corrupt pdb output (Thu Feb 16 2012 - 16:21:53 CST)
- Re: pdb reader/writer appears to corrupt pdb output (Thu Feb 16 2012 - 15:51:08 CST)
- Re: Create multiple tcl interpreter child instances within VMD to run several scripts at once (Thu Feb 16 2012 - 11:52:15 CST)
- Re: Create multiple tcl interpreter child instances within VMD to run several scripts at once (Thu Feb 16 2012 - 11:40:11 CST)
- Re: Do H-bonds cross periodic boundaries? Re: Hbonds Analysis. (Thu Feb 16 2012 - 10:34:58 CST)
- Re: quick-surf and throb (Thu Feb 16 2012 - 09:40:44 CST)
- Re: Spatial (angular) distribution function (Wed Feb 15 2012 - 10:17:06 CST)
- Re: Hbonds Analysis (Wed Feb 15 2012 - 10:13:18 CST)
- Re: ERROR) Tcl startup error: Can't find a usable init.tcl in the following directories: (Wed Feb 15 2012 - 10:08:38 CST)
- Re: Problem with VMD 1.9.1 (CUDA) on Snow Leopard (Tue Feb 14 2012 - 11:52:24 CST)
- Re: change of font (Fri Feb 10 2012 - 09:04:57 CST)
- Re: Tcl script error (Thu Feb 09 2012 - 14:23:21 CST)
- Re: Tcl script error (Wed Feb 08 2012 - 15:18:44 CST)
- Re: testing vmd1.9.1 (Wed Feb 08 2012 - 13:34:10 CST)
- Re: Re: Topotools - limit to size of system it can be used for? (Wed Feb 08 2012 - 10:06:45 CST)
- Re: Tcl script error (Mon Feb 06 2012 - 11:23:05 CST)
- Re: Tcl script error (Mon Feb 06 2012 - 10:58:26 CST)
- Re: The spheres become oval, getting close to the screen borders (Sun Feb 05 2012 - 10:44:57 CST)
- Announce: VMD 1.9.1 released (Sat Feb 04 2012 - 14:25:58 CST)
- Re: Error while running steered MD script (Thu Feb 02 2012 - 18:18:20 CST)
- Re: Error while running steered MD script (Thu Feb 02 2012 - 17:10:01 CST)
- Re: Coloring by RMSD during trajectory (Wed Feb 01 2012 - 23:14:38 CST)
- Re: Use "Metal complexes/FeS-clusters" in VMD paratool (Wed Feb 01 2012 - 23:21:49 CST)
- Re: Coloring by RMSD during trajectory (Thu Feb 02 2012 - 00:00:15 CST)
- Re: camera position and scale (Wed Feb 01 2012 - 23:18:23 CST)
- Re: how to merge two PDB trajectories? (Wed Feb 01 2012 - 23:40:45 CST)
- Re: Yet another python question: how to run a python script from the vmd console ? (Wed Feb 01 2012 - 23:33:46 CST)
- Re: Unusual visualisations (Wed Feb 01 2012 - 16:11:07 CST)
- Re: surface potential on an externally loaded msms surface (Wed Feb 01 2012 - 16:21:39 CST)
- Re: is it possible to enable GPU rendering? (Wed Feb 01 2012 - 14:12:47 CST)
- Re: Query Fields (Wed Feb 01 2012 - 13:58:00 CST)
- Re: Quantitative meaning of volmap isosurface (Wed Feb 01 2012 - 14:19:18 CST)
- Re: Save coor coordinates as pdb (Wed Feb 01 2012 - 13:53:58 CST)
- Re: Gromacs analysis tools for Namd output (Wed Feb 01 2012 - 11:47:43 CST)
- Re: Unusual visualisations (Wed Feb 01 2012 - 10:50:30 CST)
- Re: RE : PCA of desmond trajectories (Wed Feb 01 2012 - 10:41:58 CST)
- Re: NewRibbons/NewCartoon problem due to missing CUDA ? (Tue Jan 31 2012 - 15:47:00 CST)
- Re: problem with new plugin installation. (Sat Jan 28 2012 - 11:25:14 CST)
- Re: surface potential on an externally loaded msms surface (Sat Jan 28 2012 - 10:38:49 CST)
- Re: Cutting a sphere with a specified radius along a trajectory (Fri Jan 27 2012 - 17:17:43 CST)
- Re: Looking for nice example images for VMD 1.9.1 release page... (Fri Jan 27 2012 - 17:10:57 CST)
- Re: surface potential on an externally loaded msms surface (Fri Jan 27 2012 - 15:39:03 CST)
- Re: how to enlarge the menu font? (Fri Jan 27 2012 - 01:42:20 CST)
- Re: Viewing "other" data as a trajectory plays (Thu Jan 26 2012 - 12:19:32 CST)
- Re: VMD 1.9.1 beta 2 to be posted tonight... (Thu Jan 26 2012 - 09:34:20 CST)
- Re: VMD 1.9.1 beta 2 to be posted tonight... (Wed Jan 25 2012 - 19:35:42 CST)
- VMD 1.9.1 beta 2 to be posted tonight... (Wed Jan 25 2012 - 16:08:28 CST)
- Re: unit cell volume is zero (Wed Jan 25 2012 - 16:03:35 CST)
- Looking for nice example images for VMD 1.9.1 release page... (Wed Jan 25 2012 - 14:29:39 CST)
- Re: Re: CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? (Wed Jan 25 2012 - 09:59:13 CST)
- Re: ionic radii of sodium and chloride (Tue Jan 24 2012 - 15:23:04 CST)
- Re: Topotools - limit to size of system it can be used for? (Tue Jan 24 2012 - 10:09:45 CST)
- Re: Topotools - limit to size of system it can be used for? (Tue Jan 24 2012 - 10:15:38 CST)
- Re: ImportError: cannot import name AtomSel (Mon Jan 23 2012 - 16:35:53 CST)
- Re: Calling all DCD files in a directory sequentially using CatDCD (Mon Jan 23 2012 - 15:24:51 CST)
- Re: Generating a psf file using VMD (Mon Jan 23 2012 - 10:58:38 CST)
- Re: ERROR) measure gofr: bad frame range given. max (Mon Jan 23 2012 - 10:01:36 CST)
- Re: ionic radii of sodium and chloride (Fri Jan 20 2012 - 14:05:58 CST)
- Re: Re: CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? (Thu Jan 19 2012 - 13:07:25 CST)
- Re: rendering question (Thu Jan 19 2012 - 11:31:20 CST)
- Re: New "surf" calculations in VMD 1.9.1 beta (Wed Jan 18 2012 - 11:01:13 CST)
- Re: Haptic devices for IMD (Wed Jan 18 2012 - 10:57:05 CST)
- Re: out-of-core visualization of large trajectories (Tue Jan 17 2012 - 12:19:40 CST)
- Re: Re: CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? (Fri Jan 13 2012 - 14:52:45 CST)
- Re: precompiled python libraries still work for vmd 1.9 (Fri Jan 13 2012 - 11:24:56 CST)
- Re: using vmd to apply symmetry transformations (Fri Jan 13 2012 - 10:58:08 CST)
- Re: Re: CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? (Thu Jan 12 2012 - 10:48:06 CST)
- Re: Re: VMD and 3D visualization problems with Nvidia Quadro 4000 (Tue Jan 10 2012 - 14:43:54 CST)
- Re: Re: CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? (Thu Jan 05 2012 - 15:14:17 CST)
- Re: Re: vmd 1.9.1 beta - quicksurf rendering artifacts (Thu Jan 05 2012 - 14:08:48 CST)
- Re: Re: vmd 1.9.1 beta - quicksurf rendering artifacts (Wed Jan 04 2012 - 09:28:23 CST)
- Re: R: I: vmd on windows (Tue Jan 03 2012 - 10:06:38 CST)
- Re: VMD 1.9.1 beta 1 (RMSDTT bug) (Tue Jan 03 2012 - 10:11:29 CST)
- VMD 1.9.1 beta 1 posted for download... (Fri Dec 30 2011 - 01:02:15 CST)
- Re: I: vmd on windows (Thu Dec 29 2011 - 22:21:19 CST)
- Re: Analyzing a 10ns simulation on Mac aborts (Thu Dec 29 2011 - 22:49:32 CST)
- Re: get Ramachadran plot using textmode (Fri Dec 23 2011 - 17:46:46 CST)
- Re: Povray renders labels always centered (Fri Dec 23 2011 - 17:39:06 CST)
- Re: Change Color Scale (Wed Dec 21 2011 - 15:09:09 CST)
- Re: VMD stereo for NVidia Quadro 5000? (Mon Dec 19 2011 - 17:23:53 CST)
- Re: vmd-l DynamicBond between two given type of atoms (Mon Dec 19 2011 - 17:21:29 CST)
- Re: About open file .pdbqt in VMD software (Mon Dec 19 2011 - 17:29:30 CST)
- Re: vmd on windows (Mon Dec 19 2011 - 17:26:39 CST)
- Re: VMD on Windows64 (Mon Dec 19 2011 - 16:57:52 CST)
- Re: Improve OFF plugin: handle colors (Wed Dec 07 2011 - 00:56:19 CST)
- Re: How to disable CUDA in VMD-1.9? (Wed Nov 30 2011 - 21:18:23 CST)
- Re: VMD STRIDE not functional after operating system upgrade (Wed Nov 30 2011 - 10:24:22 CST)
- Re: VMD never finishes reading vis. state file, stalls and hoggs CPU (Wed Nov 30 2011 - 09:50:16 CST)
- Re: VRPN-ICMS conflict with NVidia driver (Wed Nov 30 2011 - 09:22:56 CST)
- Re: Save pdb with original numbering (Tue Nov 29 2011 - 10:25:22 CST)
- Re: clip plane and cpk / VdW (Wed Nov 23 2011 - 09:22:43 CST)
- Re: Installation problems with VMD 1.9 (Fri Nov 18 2011 - 11:24:03 CST)
- Re: VMD slows down at multiple windows (Fri Nov 18 2011 - 11:18:44 CST)
- Re: VRPN-ICMS conflict with NVidia driver (Fri Nov 18 2011 - 01:49:18 CST)
- Re: VMD slows down at multiple windows (Thu Nov 17 2011 - 14:13:49 CST)
- Re: VMD slows down at multiple windows (Thu Nov 17 2011 - 13:30:06 CST)
- Re: VMD slows down at multiple windows (Wed Nov 16 2011 - 12:56:18 CST)
- Re: Feedback wanted from Linux VMD users with ATI/AMD graphics chipsets (Fri Nov 11 2011 - 16:13:14 CST)
- Re: Volume Slice + Coloring by volume problem in MacOsx (REPOST) (Fri Nov 11 2011 - 15:14:37 CST)
- Re: how to place polymers on carbon nanotube surface (Fri Nov 11 2011 - 12:51:11 CST)
- Re: Feedback wanted from Linux VMD users with ATI/AMD graphics chipsets (Fri Nov 11 2011 - 12:42:32 CST)
- Re: GPU choice for large systems (Fri Nov 11 2011 - 12:41:03 CST)
- Re: Adding a three letter residue name to VMD's protein recognition (Fri Nov 11 2011 - 12:24:10 CST)
- Re: Volume Slice + Coloring by volume problem in MacOsx (Fri Nov 11 2011 - 10:12:57 CST)
- Re: Feedback wanted from Linux VMD users with ATI/AMD graphics chipsets (Fri Nov 11 2011 - 10:19:21 CST)
- Re: installing and running VMD on Windows 64-bit (Fri Nov 11 2011 - 09:32:51 CST)
- Re: Adding an atom to existing trajectory (to enable RDF from centre of mass of a selection) (Fri Nov 11 2011 - 10:06:58 CST)
- Re: RMSD Tool failes with MOL ID > 999 (Fri Nov 11 2011 - 09:48:57 CST)
- Re: rlwrap problem on (Fri Nov 11 2011 - 09:26:24 CST)
- Re: Save "Visulaization State" from within Tk Console (Fri Nov 11 2011 - 09:20:43 CST)
- Re: UPDATE OCCUPANCY (Fri Nov 11 2011 - 09:22:49 CST)
- Re: installing and running VMD on Windows 64-bit (Thu Nov 10 2011 - 10:05:29 CST)
- Re: graphical representation (Mon Nov 07 2011 - 13:29:43 CST)
- Re: Suppress "Info)" messages (Mon Nov 07 2011 - 12:34:07 CST)
- Re: blank output (Mon Nov 07 2011 - 12:43:57 CST)
- Re: Re: tkinter load problem in VMD (Sun Nov 06 2011 - 00:24:39 CDT)
- Re: Dynamic lines (Wed Nov 02 2011 - 14:12:35 CDT)
- Re: Dynamic lines (Mon Oct 31 2011 - 16:18:33 CDT)
- Re: haptic devices VMD/NAMD/IMD (Mon Oct 31 2011 - 16:04:46 CDT)
- Re: selection (Mon Oct 31 2011 - 16:00:46 CDT)
- Re: Hi all, (Mon Oct 31 2011 - 16:10:14 CDT)
- Re: selection (Mon Oct 31 2011 - 14:39:13 CDT)
- Feedback wanted from Linux VMD users with ATI/AMD graphics chipsets (Mon Oct 31 2011 - 10:12:15 CDT)
- Re: Problem with Movie Maker (Mon Oct 31 2011 - 09:54:03 CDT)
- Re: Installing CATDCD on a Mac (Fri Oct 28 2011 - 16:21:43 CDT)
- Re: Thinkpad X120e with Linux and VMD (Fri Oct 28 2011 - 14:28:21 CDT)
- Re: VMD crashes. (Fri Oct 28 2011 - 10:44:02 CDT)
- Re: Is it possible to automatically label all bonds? (Thu Oct 27 2011 - 12:42:54 CDT)
- Re: Problem vmd 1.9 plus Cave (Thu Oct 27 2011 - 01:29:42 CDT)
- Re: Selecting Atoms within a Volume, Manipulating Volumetric Data (Wed Oct 26 2011 - 21:43:49 CDT)
- Re: Compiling vmd 1.9 plugins (Wed Oct 26 2011 - 17:03:49 CDT)
- Re: Problem building POPE membrane with plugin using CHARMM36 (Fri Oct 14 2011 - 11:37:57 CDT)
- Re: Using two color scales in one scene (Thu Oct 13 2011 - 14:33:52 CDT)
- Re: How to select whole residues when at least one atom is within a specific distance (Thu Oct 13 2011 - 14:32:26 CDT)
- Re: (Thu Oct 13 2011 - 10:33:26 CDT)
- Re: Re: amber traj to pqr - radii error (Thu Oct 13 2011 - 10:25:45 CDT)
- Re: GPU choice for large systems (Sun Oct 02 2011 - 23:02:20 CDT)
- Re: GPU choice for large systems (Sat Oct 01 2011 - 21:26:37 CDT)
- Re: GPU choice for large systems (Sat Oct 01 2011 - 21:20:18 CDT)
- Re: VMD meets Andy Warhol/Campbell's Soup on display wall (Fri Sep 30 2011 - 12:22:48 CDT)
- Re: VMD meets Andy Warhol/Campbell's Soup on display wall (Fri Sep 30 2011 - 12:19:23 CDT)
- Re: problem of exceeding max atom number (Tue Sep 27 2011 - 13:24:22 CDT)
- Re: fonts for paratool (Thu Sep 22 2011 - 01:31:07 CDT)
- Re: redirecting to output (Thu Sep 22 2011 - 01:42:26 CDT)
- Re: Problem building POPE membrane with plugin using CHARMM36 (Wed Sep 21 2011 - 11:32:57 CDT)
- Re: radial pair distribution problems (Wed Sep 21 2011 - 11:22:33 CDT)
- Re: A bug about "trans" command (Wed Sep 21 2011 - 11:06:17 CDT)
- Re: RMSD heatmapper -plugin (Mon Sep 19 2011 - 14:03:52 CDT)
- Re: I can't not see my post in Archive list (Sat Sep 17 2011 - 23:42:43 CDT)
- Re: Clustering MD trajectories (Fri Sep 16 2011 - 15:02:59 CDT)
- Re: Showing and Calculating the amount of water molecules inside carbon nanotube (Fri Sep 16 2011 - 13:59:40 CDT)
- Re: Cionize (Fri Sep 16 2011 - 13:48:43 CDT)
- Re: re: Bug in 'source' command or in for loop? (Fri Sep 16 2011 - 14:03:38 CDT)
- Re: color with name (Fri Sep 16 2011 - 13:32:39 CDT)
- Re: Does Paratool support CgenFF? (Wed Sep 14 2011 - 10:10:31 CDT)
- 2011 VMD User Survey results are posted... (Tue Sep 13 2011 - 15:26:21 CDT)
- Re: Bug in 'source' command or in for loop? (Tue Sep 13 2011 - 13:52:43 CDT)
- Re: linux issues (Mon Sep 12 2011 - 11:22:06 CDT)
- Re: TK console problem (Sun Sep 11 2011 - 12:06:56 CDT)
- Re: TK console problem (Wed Sep 07 2011 - 10:50:41 CDT)
- Re: pdb naming convention to get ribbon representation (Thu Sep 01 2011 - 07:59:26 CDT)
- Re: CUDA cores seen by VMD on GT540M (Wed Aug 31 2011 - 10:19:39 CDT)
- Re: VMD movie (Tue Aug 30 2011 - 11:25:30 CDT)
- Re: Re: vmd does not run on the VNC client (Thu Aug 25 2011 - 22:40:57 CDT)
- Re: vmd does not run on the VNC client (Thu Aug 25 2011 - 21:27:07 CDT)
- Re: Mailing list problems (Wed Aug 24 2011 - 15:08:03 CDT)
- Re: Initial configuration reorientation (Wed Aug 24 2011 - 12:43:52 CDT)
- Re: extrabonds (Wed Aug 24 2011 - 10:21:28 CDT)
- Re: extrabonds (Tue Aug 23 2011 - 17:05:37 CDT)
- Re: Fwd: Dowser plugin: Error message (Tue Aug 23 2011 - 12:39:44 CDT)
- Re: making movie (Tue Aug 23 2011 - 10:36:05 CDT)
- Re: visualizing unrealistic bonds (Tue Aug 23 2011 - 09:06:23 CDT)
- Re: making movie (Tue Aug 23 2011 - 08:59:36 CDT)
- Re: How can I draw secondary structures if I only have the carbon alpha coordinates (Thu Aug 18 2011 - 12:36:30 CDT)
- Re: How can I draw secondary structures if I only have the carbon alpha coordinates (Thu Aug 18 2011 - 11:48:01 CDT)
- Re: Intel HD3000 versus ATI Mobility Radeon 6310 (Wed Aug 17 2011 - 00:50:43 CDT)
- Re: Spaceball navigator - making movies (Tue Aug 16 2011 - 10:16:56 CDT)
- Re: visualizing unrealistic bonds (Mon Aug 15 2011 - 11:21:02 CDT)
- Re: Maria Tziastoudi (Fri Aug 12 2011 - 09:39:51 CDT)
- Re: Vmd Problem (Thu Aug 11 2011 - 16:51:38 CDT)
- Re: Vmd Problem (Thu Aug 11 2011 - 16:36:50 CDT)
- Re: Change Path to Povray (Thu Aug 11 2011 - 10:30:15 CDT)
- Re: Long atom types from CGenFF causing charge problems (Tue Aug 09 2011 - 22:19:02 CDT)
- Re: TCL and Plugins (Tue Aug 09 2011 - 13:45:32 CDT)
- Re: PDB manipulation (Fri Aug 05 2011 - 16:35:52 CDT)
- Re: .car or .xyz output (Fri Aug 05 2011 - 16:15:47 CDT)
- Re: Fwd: hbond analysis (Fri Aug 05 2011 - 16:28:17 CDT)
- Re: problem to render .cms file (Fri Aug 05 2011 - 16:12:31 CDT)
- Re: making movie (Fri Aug 05 2011 - 16:13:28 CDT)
- Re: selection of sugars with VMD (Tue Aug 02 2011 - 17:09:34 CDT)
- Re: converting .dx volumetric data to 2D isocontour (Tue Aug 02 2011 - 16:53:16 CDT)
- VMD User Survey coming to your email inbox soon.... (Tue Aug 02 2011 - 10:19:24 CDT)
- Re: Nvidia quadro Fx1300 problem (Fri Jul 29 2011 - 09:57:18 CDT)
- Re: Question about eval (Tue Jul 26 2011 - 11:40:45 CDT)
- Re: AMBER coordinates with periodic box (Wed Jul 20 2011 - 13:41:23 CDT)
- Re: calculate atom distance between two chain (Mon Jul 18 2011 - 09:57:59 CDT)
- Re: how to draw different set of points for different frames in a trajectory my script does not work (Tue Jul 12 2011 - 13:19:29 CDT)
- Re: A patch for OFF import and a question about representation of surfaces (Tue Jul 12 2011 - 13:22:54 CDT)
- Re: import selection in array for script (Tue Jul 12 2011 - 13:04:43 CDT)
- Re: qpt_conv command of Hole is interactive, how to automate it for multiple frames? (Tue Jul 12 2011 - 13:08:13 CDT)
- Re: Pucker parameters (Tue Jul 12 2011 - 12:53:39 CDT)
- Re: Retrieving Cremer-Pople parameters (Tue Jul 12 2011 - 09:13:36 CDT)
- Re: stereo anaglyph rendering (Sun Jul 10 2011 - 22:17:20 CDT)
- Re: Does this work with VMD: Nvidia 3DVision Glasses + SyncMaster 2233RZ + GTX 580 + Win7? (Sat Jul 09 2011 - 22:20:20 CDT)
- Re: Quadro FX1800 , Stereo and VMD (Fri Jul 08 2011 - 11:38:42 CDT)
- Re: Quadro FX1800 , Stereo and VMD (Fri Jul 08 2011 - 10:41:12 CDT)
- Re: Salt brigde (Thu Jul 07 2011 - 13:01:56 CDT)
- Re: Computer hangs on trying to launch VMD CUDA (Tue Jul 05 2011 - 14:01:24 CDT)
- Re: contacts and pbc (Tue Jul 05 2011 - 13:59:28 CDT)
- Re: VMD atom NUMER problem (Wed Jun 29 2011 - 17:25:42 CDT)
- Re: VMD atom NUMER problem (Wed Jun 29 2011 - 15:21:41 CDT)
- Re: Display Multiple Bond Order (Wed Jun 29 2011 - 15:24:24 CDT)
- Re: color trajectory using specific values rather than color scale (Mon Jun 27 2011 - 10:42:31 CDT)
- Re: not to display atoms in certain region (Fri Jun 24 2011 - 15:45:31 CDT)
- Re: not to display atoms in certain region (Fri Jun 24 2011 - 15:01:06 CDT)
- Re: VMD not working on MacOS X 10.6.7 (Thu Jun 23 2011 - 12:37:18 CDT)
- Re: Question about "orient" script (Tue Jun 21 2011 - 13:15:44 CDT)
- Re: how to get pqr format file with catdcd (Tue Jun 21 2011 - 09:10:16 CDT)
- Re: problem in launching vmd (Tue Jun 21 2011 - 08:57:50 CDT)
- Re: how to get pqr format file with catdcd (Mon Jun 20 2011 - 15:34:01 CDT)
- Re: Re: Fwd: "cuda error cudastreamcreate", (Fri Jun 17 2011 - 01:22:50 CDT)
- Re: Selecting multiple ranges (Fri Jun 10 2011 - 09:43:48 CDT)
- Re: Problem using rotate command in a script ...(2) (Fri Jun 10 2011 - 09:40:45 CDT)
- Re: VMD does not exit after running closest.tcl script in combination with bigdcd (Fri Jun 10 2011 - 09:27:05 CDT)
- Re: VMD does not exit after running closest.tcl script in combination with bigdcd (Thu Jun 09 2011 - 16:02:54 CDT)
- Re: Problem using rotate command in a script .... (Thu Jun 09 2011 - 10:53:17 CDT)
- Re: VMD on Intel core i3 + Ubuntu (Tue Jun 07 2011 - 22:48:47 CDT)
- Re: VMD on Intel core i3 + Ubuntu (Tue Jun 07 2011 - 19:31:07 CDT)
- Re: installation trouble (Tue Jun 07 2011 - 15:58:43 CDT)
- Re: For loops decelerate (Mon Jun 06 2011 - 13:47:41 CDT)
- Re: how do I show contacts with XXX angstroms between a protein and a ligand? (Mon Jun 06 2011 - 13:45:23 CDT)
- Re: how do I show contacts with XXX angstroms between a protein and a ligand? (Mon Jun 06 2011 - 13:42:29 CDT)
- Re: For loops decelerate (Fri Jun 03 2011 - 14:13:14 CDT)
- Re: For loops decelerate (Fri Jun 03 2011 - 13:02:04 CDT)
- Re: installation trouble (Fri Jun 03 2011 - 09:54:39 CDT)
- Re: installation trouble (Thu Jun 02 2011 - 23:11:53 CDT)
- Re: apbs with vmd, no output (Thu Jun 02 2011 - 09:44:03 CDT)
- Re: Compiling plugins without netcdf (Wed Jun 01 2011 - 10:15:46 CDT)
- Re: antechamber for Windows (Fri May 27 2011 - 15:16:20 CDT)
- Re: 3Dconnexion SpaceNavigator (OS X) (Fri May 27 2011 - 14:54:34 CDT)
- Re: Protein cavities (Fri May 27 2011 - 14:47:03 CDT)
- Re: creating psf file (Fri May 27 2011 - 14:37:59 CDT)
- Re: APBS plugin, created file pot-PE0.dx (Fri May 27 2011 - 14:43:04 CDT)
- Re: CAVE and Flystick control (Fri May 27 2011 - 14:41:03 CDT)
- Re: trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 (Wed May 25 2011 - 10:18:12 CDT)
- Re: trying to combine closewater.tcl with bigdcd.tcl error frame 3 out of range for molecule 0 (Tue May 24 2011 - 12:13:07 CDT)
- Re: APBS plugin, created file pot-PE0.dx (Mon May 23 2011 - 15:12:51 CDT)
- Re: color atom by stress (Sat May 21 2011 - 22:55:46 CDT)
- Re: Non-cuda version of VMD on Linux? (Sat May 21 2011 - 22:22:42 CDT)
- Re: Large positive non-integer charge (Tue May 17 2011 - 11:03:29 CDT)
- Re: Tkcon on at startup (Tue May 17 2011 - 11:07:55 CDT)
- Re: error in movie generator (Tue May 17 2011 - 10:11:16 CDT)
- Re: Do psf generated by psfgen and psf produced by "$sel writepsf" function in VMD have different impact on MD simulation using NAMD? (Tue May 17 2011 - 10:09:55 CDT)
- Re: Secondary Structure Disappears after Molecule Move (Mon May 16 2011 - 10:30:25 CDT)
- Re: Large positive non-integer charge (Thu May 12 2011 - 16:06:32 CDT)
- Re: Compiling plugins without netcdf support returns an error. (Thu May 12 2011 - 15:58:12 CDT)
- Re: Large positive non-integer charge (Thu May 12 2011 - 14:00:30 CDT)
- Re: command for volume slice? (Wed May 11 2011 - 11:02:12 CDT)
- Re: apbs with vmd, no output (Tue May 10 2011 - 15:09:39 CDT)
- Re: desmond trajectory plugin (Wed May 04 2011 - 22:36:41 CDT)
- Re: CAVE and Flystick control (Wed May 04 2011 - 15:15:20 CDT)
- Re: generating .xsc files using periodic information (Tue Apr 26 2011 - 11:02:48 CDT)
- Re: psfgen: error processing bonds (Tue Apr 26 2011 - 10:53:05 CDT)
- Re: ParseFEP_domain error (Tue Apr 26 2011 - 10:50:18 CDT)
- Re: X3DOM sphere resolution (Thu Apr 21 2011 - 17:14:10 CDT)
- Re: fit dcd is not converging (Thu Apr 21 2011 - 15:02:48 CDT)
- Re: fit dcd is not converging (Thu Apr 21 2011 - 12:15:30 CDT)
- Re: fit dcd is not converging (Thu Apr 21 2011 - 11:17:02 CDT)
- Re: fit dcd is not converging (Thu Apr 21 2011 - 10:22:10 CDT)
- Re: Installation/Upgrade Error (Wed Apr 20 2011 - 16:05:38 CDT)
- Re: Error starting second VMD (Tue Apr 19 2011 - 22:26:56 CDT)
- Re: mdf molfile plugin reader atom_type bug (Mon Apr 18 2011 - 16:14:00 CDT)
- Re: waters selection (Mon Apr 18 2011 - 15:58:07 CDT)
- Re: Question about SASA (Fri Apr 15 2011 - 16:03:05 CDT)
- Re: setting different bond length for different atom pair (Fri Apr 15 2011 - 16:24:55 CDT)
- Re: Res: webpdb load problem (Fri Apr 15 2011 - 15:51:38 CDT)
- Re: X3DOM sphere resolution (Thu Apr 14 2011 - 15:05:00 CDT)
- Re: X3DOM sphere resolution (Wed Apr 13 2011 - 12:51:08 CDT)
- Re: Recent Geforce Cuda GPU cards(GT 440, GTX 560ti) (Wed Apr 13 2011 - 12:57:44 CDT)
- Re: X3DOM sphere resolution (Wed Apr 13 2011 - 10:02:38 CDT)
- Re: X3DOM sphere resolution (Wed Apr 13 2011 - 09:49:34 CDT)
- Re: webpdb load problem (Tue Apr 12 2011 - 14:09:33 CDT)
- Re: Tcl plugin development and debugging (Tue Apr 12 2011 - 09:04:37 CDT)
- Re: electrostatic potential maps. (Wed Apr 06 2011 - 16:39:41 CDT)
- Re: electrostatic potential maps. (Wed Apr 06 2011 - 16:23:13 CDT)
- Re: Transparent image render problem after vmd 1.9 version (Wed Apr 06 2011 - 09:55:32 CDT)
- Re: script problem (Thu Mar 31 2011 - 15:39:01 CDT)
- Re: TCL Callbacks (Thu Mar 31 2011 - 15:04:15 CDT)
- Re: Generate a PSF file for small, simple molecules (Thu Mar 31 2011 - 14:59:37 CDT)
- Re: Molden format plugin (Tue Mar 29 2011 - 10:23:49 CDT)
- Re: Error starting second VMD (Mon Mar 28 2011 - 16:04:34 CDT)
- Re: measure dipole (Mon Mar 28 2011 - 15:52:54 CDT)
- Re: How to add ions for RBCG (Sun Mar 27 2011 - 23:42:36 CDT)
- Re: Software to create 3D PDF documents (Fri Mar 25 2011 - 22:01:53 CDT)
- Re: measure dipole (Fri Mar 25 2011 - 09:11:24 CDT)
- Re: Error starting second VMD (Fri Mar 25 2011 - 09:05:39 CDT)
- Re: Color wheel gradient (Thu Mar 24 2011 - 22:14:38 CDT)
- Re: Compiling on Windows (Thu Mar 24 2011 - 21:38:45 CDT)
- Re: VMD 1.9 builds on MACOSXX86_64 (Thu Mar 24 2011 - 21:56:32 CDT)
- Re: How to maximize the VMD display window (Thu Mar 24 2011 - 21:58:27 CDT)
- Re: Error starting second VMD (Thu Mar 24 2011 - 21:02:06 CDT)
- Re: Hbond rendering issue with VMD 1.9 (Fri Mar 18 2011 - 13:09:41 CDT)
- Re: Linkage problem when compiling fortran bindings for VMD molfile plugins (Fri Mar 18 2011 - 11:25:20 CDT)
- Re: Linkage problem when compiling fortran bindings for VMD molfile plugins (Fri Mar 18 2011 - 10:13:20 CDT)
- Re: Mouse event listener (Thu Mar 17 2011 - 14:02:14 CDT)
- Re: TCL Callbacks (Thu Mar 17 2011 - 14:11:30 CDT)
- Re: Molden format plugin (Thu Mar 17 2011 - 11:28:24 CDT)
- Re: segid & chain id (Thu Mar 17 2011 - 10:10:25 CDT)
- Re: .pdbqt file type (Thu Mar 17 2011 - 09:56:08 CDT)
- Re: problem on making a movie (Tue Mar 15 2011 - 14:14:04 CDT)
- Re: vmd for mac: range in isosurface representation (Tue Mar 15 2011 - 10:35:28 CDT)
- Announce VMD 1.9 released (Mon Mar 14 2011 - 16:49:37 CDT)
- Re: Linkage problem when compiling fortran bindings for VMD molfile plugins (Mon Mar 14 2011 - 16:22:58 CDT)
- Re: problem on making a movie (Fri Mar 11 2011 - 12:37:14 CST)
- Re: snow leopard CUDA and VMD 1.9 (Fri Mar 11 2011 - 10:50:41 CST)
- Re: problem on making a movie (Fri Mar 11 2011 - 10:31:21 CST)
- Re: GLSL with ATI 5750 in Mac OS X 10.6 / 64-bit build (Thu Mar 10 2011 - 16:38:33 CST)
- Re: psf and top (Thu Mar 10 2011 - 09:51:58 CST)
- Re: VMD 1.9 beta 3 posted for download... (Wed Mar 09 2011 - 11:06:56 CST)
- Re: VMD and Kinect (Wed Mar 09 2011 - 10:58:04 CST)
- Re: VMD beta3 windows installer (Wed Mar 09 2011 - 10:43:23 CST)
- Re: ERROR (Wed Mar 09 2011 - 00:19:45 CST)
- Re: VMD 1.9 beta 3 posted for download... (Tue Mar 08 2011 - 09:54:59 CST)
- Re: VMD 1.9 beta 3 posted for download... (Mon Mar 07 2011 - 15:53:04 CST)
- VMD 1.9 beta 3 posted for download... (Mon Mar 07 2011 - 14:53:43 CST)
- Fwd: ACS awards information (Mon Mar 07 2011 - 10:45:17 CST)
- Re: Android support (Sun Mar 06 2011 - 15:44:09 CST)
- Re: Android support (Sun Mar 06 2011 - 15:28:46 CST)
- Re: Android support (Sun Mar 06 2011 - 13:39:44 CST)
- Re: public VMD cvs server (Fri Mar 04 2011 - 09:13:10 CST)
- Re: Bug in VMD? (Thu Mar 03 2011 - 13:38:58 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins (Thu Mar 03 2011 - 13:28:03 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins (Wed Mar 02 2011 - 12:46:57 CST)
- Re: VMD.RC Question (Wed Mar 02 2011 - 12:45:53 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins (Wed Mar 02 2011 - 10:07:35 CST)
- Re: Installing VMD 1.8.7 on i686/SL5 (Wed Mar 02 2011 - 10:02:46 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins (Tue Mar 01 2011 - 12:32:51 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins (Tue Mar 01 2011 - 11:28:30 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins (Tue Mar 01 2011 - 10:54:55 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins (Tue Mar 01 2011 - 10:38:20 CST)
- Re: Compiling Fortran bindings for the VMD molfile plugins (Tue Mar 01 2011 - 10:24:32 CST)
- VMD 1.9 beta 2 posted for download... (Mon Feb 28 2011 - 21:44:36 CST)
- Re: surf fails with TIP4P water in VMD 1.9b1 (Mon Feb 28 2011 - 10:57:03 CST)
- Re: Intel HD Graphics and VMD (Sun Feb 27 2011 - 23:22:29 CST)
- Re: Pot.dx files (Sun Feb 27 2011 - 22:54:11 CST)
- Re: Re2: ERROR: graphics: color index value '1057' out of range (Sun Feb 27 2011 - 22:03:44 CST)
- Re: Using the MovieMaker (Thu Feb 24 2011 - 20:42:33 CST)
- Re: autopsf-patches C++ error 'expected integer but got "" ""' (Wed Feb 23 2011 - 16:54:55 CST)
- Re: feature request (Wed Feb 23 2011 - 15:45:48 CST)
- Re: Re: VMD 1.9 beta 1 posted for download... (Wed Feb 23 2011 - 15:05:00 CST)
- Re: Incorrect results from 'measure dipole -masscenter' (Wed Feb 23 2011 - 13:55:38 CST)
- Re: abuot avpos (Wed Feb 23 2011 - 13:02:12 CST)
- Re: autopsf-patches C++ error 'expected integer but got "" ""' (Wed Feb 23 2011 - 10:34:09 CST)
- Re: autopsf-patches C++ error 'expected integer but got "" ""' (Wed Feb 23 2011 - 10:47:31 CST)
- Re: Compiling on Windows (Wed Feb 23 2011 - 10:31:18 CST)
- Re: Re: VMD 1.9 beta 1 posted for download... (Wed Feb 23 2011 - 00:11:12 CST)
- Re: Compiling on Windows (Tue Feb 22 2011 - 22:09:56 CST)
- Re: Re: VMD 1.9 beta 1 posted for download... (Tue Feb 22 2011 - 12:45:55 CST)
- Re: Compiling on Windows (Mon Feb 21 2011 - 21:51:33 CST)
- Re: Compiling on Windows (Mon Feb 21 2011 - 21:28:02 CST)
- Re: memory leak 1.8.7 and 1.9b1 (Mon Feb 21 2011 - 09:48:08 CST)
- Re: Compiling on Windows (Fri Feb 18 2011 - 22:19:44 CST)
- Re: Compiling on Windows (Fri Feb 18 2011 - 12:29:42 CST)
- Re: Re: VMD 1.9 beta 1 posted for download... (Fri Feb 18 2011 - 11:54:35 CST)
- Re: Compiling on Windows (Fri Feb 18 2011 - 11:57:33 CST)
- Re: Compiling on Windows (Fri Feb 18 2011 - 11:51:14 CST)
- Re: Compiling on Windows (Fri Feb 18 2011 - 10:06:44 CST)
- Re: Compiling on Windows (Thu Feb 17 2011 - 14:40:24 CST)
- Re: VMD 1.9 beta 1 posted for download... (Thu Feb 17 2011 - 09:36:22 CST)
- Re: Re: VMD 1.9 beta 1 posted for download... (Thu Feb 17 2011 - 09:44:59 CST)
- Re: Re: VMD 1.9 beta 1 posted for download... (Thu Feb 17 2011 - 01:08:54 CST)
- Re: Re: VMD 1.9 beta 1 posted for download... (Wed Feb 16 2011 - 16:08:36 CST)
- Re: VMD 1.9 beta 1 posted for download... (Wed Feb 16 2011 - 11:21:31 CST)
- VMD 1.9 beta 1 posted for download... (Tue Feb 15 2011 - 19:26:31 CST)
- Re: conflict between VMD and Cygwin (Mon Feb 14 2011 - 18:19:52 CST)
- Re: only one model is displayed (Fri Feb 11 2011 - 12:49:23 CST)
- Re: Displaying an overlay of multiple structures with VMD (Thu Feb 10 2011 - 12:56:22 CST)
- Re: Displaying an overlay of multiple structures with VMD (Tue Feb 08 2011 - 14:22:21 CST)
- Re: Multiseq in text mode (Mon Feb 07 2011 - 20:30:11 CST)
- Re: ERROR while using PSF builder (Mon Feb 07 2011 - 20:25:33 CST)
- Re: Installation problem with VMD, Multiseq, and BLAST (Thu Feb 03 2011 - 16:10:24 CST)
- Re: vrml2 output crashes VTK/Paraview (Thu Feb 03 2011 - 09:25:00 CST)
- Re: vmd draw command for text (Tue Feb 01 2011 - 09:47:07 CST)
- Re: License question (Sat Jan 29 2011 - 19:18:20 CST)
- Re: Re: Trouble rendering tranparent atoms with Tachyon (Fri Jan 28 2011 - 10:14:26 CST)
- Re: illegal stereo mode (Fri Jan 28 2011 - 08:55:05 CST)
- Re: vrml2 output crashes VTK/Paraview (Thu Jan 27 2011 - 20:09:15 CST)
- Re: GLSL with ATI 5750 in Mac OS X 10.6 / 64-bit build (Thu Jan 27 2011 - 13:44:16 CST)
- Re: a problem about multiplot (Wed Jan 26 2011 - 20:19:47 CST)
- Re: GLSL with ATI 5750 in Mac OS X 10.6 / 64-bit build (Wed Jan 26 2011 - 14:31:53 CST)
- Re: Problem installing vmd in UBUNTU 10.10 (Sat Jan 15 2011 - 13:15:09 CST)
- Re: problem in extracting frame number (Thu Jan 13 2011 - 09:53:20 CST)
- Re: volumetric trajectory (Mon Jan 10 2011 - 14:28:55 CST)
- Re: vmd with 3d vision (Fri Jan 07 2011 - 17:04:27 CST)
- Re: Running Namd in Window (Mon Jan 03 2011 - 13:46:34 CST)
- Re: problem regarding the MC trajectory (Wed Dec 15 2010 - 16:25:24 CST)
- Re: Bug in AutoIMD (Thu Dec 09 2010 - 16:42:53 CST)
- Re: surface representation question (Thu Dec 09 2010 - 16:40:35 CST)
- Re: Translating protein along one coordinate (Thu Dec 09 2010 - 16:25:47 CST)
- Re: apocynin/1k4u (Tue Dec 07 2010 - 09:23:57 CST)
- Re: Membrane Protein Tutorial (Mon Dec 06 2010 - 09:31:05 CST)
- Re: RE Q?= use gelato render with VMD 1.8.7 for movie (Fri Dec 03 2010 - 14:17:31 CST)
- Re: top2psf - bridging_waters.tcl script (Fri Dec 03 2010 - 12:08:59 CST)
- Re: Can VMD build predicted protein structures by homology? (Fri Dec 03 2010 - 12:02:47 CST)
- Re: use gelato render with VMD 1.8.7 for movie (Fri Dec 03 2010 - 11:55:24 CST)
- Re: top2psf - bridging_waters.tcl script (Mon Nov 29 2010 - 10:32:03 CST)
- Re: tcl script problem using -dispdev text .. (Fri Nov 19 2010 - 21:40:52 CST)
- Re: How to Measure Radius of gyration (Tue Nov 16 2010 - 23:33:36 CST)
- Re: Rendering .dat files created from Movie Maker using Tachyon (Tue Nov 16 2010 - 23:43:17 CST)
- Re: Problem With No Atoms In Selection (Tue Nov 16 2010 - 15:33:50 CST)
- Re: Headtracking software (Tue Nov 16 2010 - 15:23:14 CST)
- Re: vmd-I:Hbonds (Thu Nov 11 2010 - 11:07:55 CST)
- Re: POV renderer and volume coloring problem (Thu Nov 11 2010 - 07:53:50 CST)
- Re: dtr plugin: does it work for forces traj? (Wed Nov 10 2010 - 13:22:07 CST)
- Re: k3b also launches vmd (Wed Nov 10 2010 - 10:47:01 CST)
- Re: Graphics card for VMD, number of atoms, file format (Tue Nov 09 2010 - 11:16:54 CST)
- Re: 3D protein visualization (Mon Nov 08 2010 - 16:33:55 CST)
- Re: 3D protein visualization (Mon Nov 08 2010 - 16:31:45 CST)
- Re: Web Portal NAMD Job Visualisation...possibilities? (Wed Nov 03 2010 - 22:54:44 CDT)
- Re: Regarding merging of two files (Wed Nov 03 2010 - 13:40:30 CDT)
- Re: Regarding merging of two files (Wed Nov 03 2010 - 13:03:11 CDT)
- Re: menus unresponsive in ubuntu 10.10 (Fri Oct 29 2010 - 09:28:23 CDT)
- Re: How to delete a residue (Wed Oct 27 2010 - 12:53:23 CDT)
- Re: psf gen charmm format (Wed Oct 20 2010 - 13:57:18 CDT)
- Re: Adding cadmium into protein (Wed Oct 20 2010 - 10:23:25 CDT)
- Re: problem at convert single trajectory frame to pdb (Tue Oct 19 2010 - 12:35:58 CDT)
- Re: problem at convert single trajectory frame to pdb (Tue Oct 19 2010 - 12:03:43 CDT)
- Re: problem at convert single trajectory frame to pdb (Tue Oct 19 2010 - 11:39:47 CDT)
- Re: Vega ZZ DCD trajectory crashes VMD (Tue Oct 19 2010 - 11:28:45 CDT)
- Re: problem at convert single trajectory frame to pdb (Tue Oct 19 2010 - 10:45:43 CDT)
- Re: Vega ZZ DCD trajectory crashes VMD (Tue Oct 19 2010 - 11:07:27 CDT)
- Re: Vega ZZ DCD trajectory crashes VMD (Tue Oct 19 2010 - 10:39:50 CDT)
- Re: Re: plugin for Abinit output files (Sun Oct 17 2010 - 17:54:20 CDT)
- Re: Memory leak with "mol modselect" and index (Sun Oct 17 2010 - 15:52:47 CDT)
- Re: setenv: Too many arguments (Fri Oct 15 2010 - 16:42:00 CDT)
- Re: Interaction Energy Using Python (Fri Oct 15 2010 - 13:57:51 CDT)
- Re: Bond Colors (Thu Oct 14 2010 - 11:54:04 CDT)
- Re: Real-time ambient occlusion lighting (Wed Oct 13 2010 - 11:22:46 CDT)
- Re: Real-time ambient occlusion lighting (Wed Oct 13 2010 - 10:43:47 CDT)
- Re: Real-time ambient occlusion lighting (Tue Oct 12 2010 - 19:58:12 CDT)
- Re: Selecting by X-coordinate (Tue Oct 12 2010 - 17:43:19 CDT)
- Re: Real-time ambient occlusion lighting (Tue Oct 12 2010 - 16:24:42 CDT)
- Re: Interaction Energy Using Python (Tue Oct 12 2010 - 15:34:49 CDT)
- Re: missing frames in trajectory file (Tue Oct 12 2010 - 15:28:06 CDT)
- Re: Query regarding RMSD calculcation (Tue Oct 12 2010 - 15:25:35 CDT)
- Re: Orientation an rotation of molecules in a movie (Tue Oct 12 2010 - 15:04:26 CDT)
- Re: Combined "Within" atom selection (Tue Oct 12 2010 - 14:59:44 CDT)
- Re: Experience with Asus Netbook (Tue Sep 28 2010 - 10:45:08 CDT)
- Re: Solvent accessible surface area change during MD run (Tue Sep 28 2010 - 10:53:46 CDT)
- Re: minimization changed the occupancy of all atoms to zero (Mon Sep 20 2010 - 16:37:47 CDT)
- Re: ppm files (Mon Sep 20 2010 - 07:39:03 CDT)
- Re: ppm files (Mon Sep 20 2010 - 07:32:29 CDT)
- Re: VMD 1.8.7 terminal window (Mon Sep 20 2010 - 00:23:29 CDT)
- Re: vmd display water molecules error (Sun Sep 19 2010 - 20:58:44 CDT)
- Re: plugin for Abinit output files (Sun Sep 19 2010 - 20:18:56 CDT)
- Re: vmd display water molecules error (Sun Sep 19 2010 - 19:46:44 CDT)
- Re: creating psf file (Sun Sep 19 2010 - 20:09:03 CDT)
- Re: bigdcd + salt-bridge analysis (Sun Sep 19 2010 - 19:39:16 CDT)
- Re: Mouse event listener (Sun Sep 19 2010 - 19:32:23 CDT)
- Re: Compatibility with Orcad (PSpice) ? (Sun Sep 19 2010 - 19:35:12 CDT)
- Re: vasp POSCAR plugin (Sun Sep 19 2010 - 19:26:47 CDT)
- Re: VMD for windows 64-bit (Sun Sep 19 2010 - 16:51:40 CDT)
- Re: minimization changed the occupancy of all atoms to zero (Sun Sep 19 2010 - 14:09:41 CDT)
- Re: Re:vmd_start_problem_in_mac OSX (Tue Sep 14 2010 - 13:03:43 CDT)
- Re: Re:vmd_start_problem_in_mac OSX (Tue Sep 14 2010 - 12:35:46 CDT)
- Re: Error encountered when quitting VMD on the Mac (Mon Sep 13 2010 - 20:08:36 CDT)
- Re: GLXBadLargeRequest and BadLength messages (Mon Sep 13 2010 - 16:34:33 CDT)
- Re: compile windows binary in linux (Mon Sep 13 2010 - 14:28:01 CDT)
- Re: change residue colors? (Mon Sep 13 2010 - 12:42:33 CDT)
- Re: writepdb append (Mon Sep 13 2010 - 12:25:47 CDT)
- Re: Anaglyph rendering problem (Mon Sep 13 2010 - 08:43:16 CDT)
- Re: maximum trajectory size? (Wed Sep 08 2010 - 19:58:19 CDT)
- Re: Loss of VDW upon rendering with POV3 (Wed Sep 08 2010 - 16:08:05 CDT)
- Re: Loss of VDW upon rendering with POV3 (Wed Sep 08 2010 - 14:26:11 CDT)
- Re: two coloring method (Fri Sep 03 2010 - 18:01:00 CDT)
- Re: Matrix based intermediate rotations (Fri Sep 03 2010 - 10:08:34 CDT)
- Re: Faster secondary structure assignment (Tue Aug 31 2010 - 10:57:35 CDT)
- Re: Faster secondary structure assignment (Mon Aug 30 2010 - 11:57:25 CDT)
- Re: RMSD trajectory tool (Fri Aug 27 2010 - 14:32:05 CDT)
- Re: VMD XRequest errors (Fri Aug 27 2010 - 14:23:38 CDT)
- Re: vmd - rendering (Wed Aug 25 2010 - 09:49:28 CDT)
- Re: runsqm plugin required but not installed (Tue Aug 24 2010 - 17:12:24 CDT)
- Re: catdcd usage with Desmond trajectory (Tue Aug 24 2010 - 16:44:25 CDT)
- Re: OSX 10.6 support? (Tue Aug 24 2010 - 10:45:39 CDT)
- Re: OSX 10.6 support? (Tue Aug 24 2010 - 10:02:20 CDT)
- [carlos.simmerling@gmail.com: Re: ACS award information, Oct 15 deadline] (Tue Aug 24 2010 - 09:48:02 CDT)
- Re: (Fri Aug 20 2010 - 14:05:26 CDT)
- Re: catdcd usage with Desmond trajectory (Thu Aug 19 2010 - 20:32:23 CDT)
- Re: PQR parser failure in pqr plugin 0.5 and pqr plugin in latest alpha (Wed Aug 18 2010 - 15:30:39 CDT)
- Re: ion bead (residue based CG) (Wed Aug 18 2010 - 15:06:39 CDT)
- Re: input file (Wed Aug 18 2010 - 15:00:41 CDT)
- Re: VMD 3D movies rendering (Wed Aug 18 2010 - 13:53:52 CDT)
- Re: PQR parser failure in pqr plugin 0.5 and pqr plugin in latest alpha (Wed Aug 18 2010 - 13:38:40 CDT)
- Re: plugin : membrane builder : "integer value too large to represent" (Wed Aug 18 2010 - 13:07:13 CDT)
- Re: VMD plus Phantom (Wed Aug 18 2010 - 13:11:03 CDT)
- Re: Is it possible to load a part of a big xtc file faster... (Wed Aug 18 2010 - 10:00:08 CDT)
- Re: VMD 3D movies rendering (Tue Aug 17 2010 - 13:47:35 CDT)
- Re: VMD 3D movies rendering (Tue Aug 17 2010 - 09:39:58 CDT)
- Re: RSMD of coarse grained molecules (Mon Aug 16 2010 - 21:50:07 CDT)
- Re: RSMD of coarse grained molecules (Mon Aug 16 2010 - 12:57:59 CDT)
- Re: where can I download Tachyon version 0.98.10 ? (Mon Aug 16 2010 - 12:54:37 CDT)
- Re: VMD 3D movies rendering (Mon Aug 16 2010 - 11:20:00 CDT)
- Re: where can I download Tachyon version 0.98.10 ? (Mon Aug 16 2010 - 11:08:36 CDT)
- Re: workaround for DynamicBonds (Mon Aug 16 2010 - 11:05:28 CDT)
- Re: where can I download Tachyon version 0.98.10 ? (Sat Aug 14 2010 - 23:10:51 CDT)
- Re: cant connect Novint Falcon with VMD (Fri Aug 13 2010 - 15:18:58 CDT)
- Re: VMD questions about animating residue distance lines and contact maps (Fri Aug 13 2010 - 13:03:59 CDT)
- Re: cant connect Novint Falcon with VMD (Fri Aug 13 2010 - 12:55:06 CDT)
- Re: VMD questions about animating residue distance lines and contact maps (Thu Aug 12 2010 - 16:43:46 CDT)
- Re: Interpreting a contact map (Thu Aug 12 2010 - 16:33:23 CDT)
- Re: cant connect Novint Falcon with VMD (Thu Aug 12 2010 - 15:00:17 CDT)
- Re: Conversion into POVRay coordinates (Fri Aug 06 2010 - 09:23:02 CDT)
- Re: Focal blur with Tachyon (Thu Aug 05 2010 - 17:09:46 CDT)
- Re: Conversion into POVRay coordinates (Thu Aug 05 2010 - 17:06:54 CDT)
- Re: upgrading vmd's nvidia component (Thu Aug 05 2010 - 16:11:09 CDT)
- Re: surface rendering across X11 windows (Mon Aug 02 2010 - 11:34:31 CDT)
- Re: multiseq/stamp alignment of coiled coil bundle and homo-dimer (Thu Jul 29 2010 - 10:21:11 CDT)
- Re: VMD XRequest errors (Wed Jul 28 2010 - 21:54:21 CDT)
- Re: VMD XRequest errors (Wed Jul 28 2010 - 21:02:30 CDT)
- Re: multiseq/stamp alignment of coiled coil bundle and homo-dimer (Wed Jul 28 2010 - 16:23:51 CDT)
- Re: VMD XRequest errors (Tue Jul 27 2010 - 23:58:01 CDT)
- Re: install on Centos - issues (Wed Jul 28 2010 - 00:01:41 CDT)
- Re: Cannot find "cionize plugin" in VMD (Wed Jul 21 2010 - 16:22:05 CDT)
- Re: Extra lines shown in trajectories in VMD (Wed Jul 21 2010 - 13:08:34 CDT)
- Re: Adding Single Residues to a Protein (Tue Jul 20 2010 - 14:59:19 CDT)
- Re: Cannot find "cionize plugin" in VMD (Tue Jul 20 2010 - 14:09:37 CDT)
- Re: Cannot find "cionize plugin" in VMD (Tue Jul 20 2010 - 12:42:15 CDT)
- Re: trajectory sort by RMSD or other (Tue Jul 20 2010 - 12:44:38 CDT)
- Re: VMD failure of RMSD Traj Tool, time index on each rendered frame, and crash (Tue Jul 20 2010 - 11:04:44 CDT)
- Re: Adding other online PDB data bases to VMD (Tue Jul 20 2010 - 10:52:25 CDT)
- Re: VMD failure of RMSD Traj Tool, time index on each rendered frame, and crash (Tue Jul 20 2010 - 10:39:53 CDT)
- Re: Building VMD on OS X 10.6 with Python and CUDA support (Tue Jul 20 2010 - 10:22:23 CDT)
- Re: Building VMD on OS X 10.6 with Python and CUDA support (Tue Jul 20 2010 - 10:23:56 CDT)
- Re: compilation of vmd 1.8.7 source (Tue Jul 20 2010 - 10:17:44 CDT)
- Re: compilation of vmd 1.8.7 source (Tue Jul 20 2010 - 09:47:22 CDT)
- Re: Cannot find "cionize plugin" in VMD (Tue Jul 20 2010 - 09:41:53 CDT)
- Re: VMD Crashes on Windows Vista when trying to load more than 5000 steps (Mon Jul 19 2010 - 09:55:03 CDT)
- Re: making a movie of an unusual trajectory (Fri Jul 16 2010 - 12:23:01 CDT)
- Re: locating or creating a .vmdsensors file for windows VMD (Wed Jul 14 2010 - 12:52:16 CDT)
- Re: using tcl variables in representation gui (Wed Jul 14 2010 - 09:32:33 CDT)
- Re: Question about vrpn server build for using Phantom with VMD (Tue Jul 13 2010 - 15:13:23 CDT)
- Re: VMD cuda (Tue Jul 13 2010 - 14:50:08 CDT)
- Re: ILS tool fails (Tue Jul 13 2010 - 11:39:50 CDT)
- Re: VMD cuda (Mon Jul 12 2010 - 16:48:39 CDT)
- Re: Install VMD on intel i5 (Mon Jul 12 2010 - 11:52:30 CDT)
- Re: Autoionize does not neutralize the system (Tue Jul 06 2010 - 15:39:48 CDT)
- Re: Autoionize does not neutralize the system (Tue Jul 06 2010 - 10:42:58 CDT)
- Re: Autoionize does not neutralize the system (Tue Jul 06 2010 - 10:16:43 CDT)
- Re: RGB values... (Sat Jul 03 2010 - 09:12:35 CDT)
- Re: Sasa implentation/ algorithm VMD (Sat Jul 03 2010 - 09:14:11 CDT)
- Re: Tachyon Rendering with a Surf Representation (Thu Jul 01 2010 - 10:20:20 CDT)
- Re: getting python to work (Thu Jul 01 2010 - 10:23:41 CDT)
- Re: VMD / Tachyon Questions (Thu Jul 01 2010 - 10:58:26 CDT)
- Re: Invalid command name "His" during Solvation (Fri Jun 25 2010 - 13:51:18 CDT)
- Re: stereo problem with vmd (Fri Jun 25 2010 - 12:56:34 CDT)
- Re: stereo problem with vmd (Fri Jun 25 2010 - 10:14:20 CDT)
- Re: Add/Remove Bonds (Thu Jun 24 2010 - 16:47:36 CDT)
- Re: VMD 1.8.7 and NVIDIA 256.35 driver problems (CUDA issue?) (Thu Jun 24 2010 - 14:58:59 CDT)
- Re: Re: convert prmtop to psf (Tue Jun 22 2010 - 13:58:14 CDT)
- Re: Cannot read MSMS data files (Tue Jun 22 2010 - 11:37:48 CDT)
- Re: vmd on Microsoft 2000 and Phantom (Tue Jun 22 2010 - 11:26:18 CDT)
- Re: Re: convert prmtop to psf (Tue Jun 22 2010 - 11:27:49 CDT)
- Re: OpenGL Display slow/freeze (Tue Jun 22 2010 - 08:54:46 CDT)
- Re: OpenGL Display slow/freeze (Tue Jun 22 2010 - 09:00:38 CDT)
- Re: OpenGL Display slow/freeze (Mon Jun 21 2010 - 22:43:38 CDT)
- Re: Re: convert prmtop to psf (Mon Jun 21 2010 - 16:56:08 CDT)
- Re: Cannot read MSMS data files (Mon Jun 21 2010 - 16:00:36 CDT)
- Re: Deleting/modifying specific molecule representations (Fri Jun 18 2010 - 16:20:57 CDT)
- Re: Gradient Background (Fri Jun 18 2010 - 15:11:05 CDT)
- Re: Fwd: -samples flag of measure sasa (Fri Jun 18 2010 - 15:25:51 CDT)
- Re: -samples flag of measure sasa (Fri Jun 18 2010 - 14:22:19 CDT)
- Re: -samples flag of measure sasa (Fri Jun 18 2010 - 13:10:08 CDT)
- Re: visualize trajectories from lammps parallel results (Thu Jun 17 2010 - 14:41:03 CDT)
- Re: saving a GMX trajectory using tcl script (Thu Jun 17 2010 - 14:43:00 CDT)
- Re: vmd crash at start (Thu Jun 17 2010 - 10:41:34 CDT)
- Re: Change only the CA coordinates in a pdb file via tcl (Mon Jun 14 2010 - 15:12:33 CDT)
- Re: Problems with Linux install... (Wed Jun 09 2010 - 16:17:18 CDT)
- Re: Rending to png format using tachyon or otherwise ? (Wed Jun 09 2010 - 10:06:06 CDT)
- Re: Trouble compiling from source - Mac OS X (Fri Jun 04 2010 - 17:08:33 CDT)
- Re: Retrieving the Cremer-Pople parameters (Fri Jun 04 2010 - 17:03:59 CDT)
- Re: Problems with Linux install... (Fri Jun 04 2010 - 16:19:09 CDT)
- Re: Problems with Linux install... (Fri Jun 04 2010 - 08:37:54 CDT)
- Re: APBS plugin (Thu Jun 03 2010 - 11:37:06 CDT)
- Re: Visualize intersection of overlapping spheres? (Wed Jun 02 2010 - 13:48:36 CDT)
- Re: psfgen plugin (Wed Jun 02 2010 - 12:58:54 CDT)
- Re: Interaction Energy (Wed Jun 02 2010 - 12:54:57 CDT)
- Re: CAN ANY ONE HELP ME (Wed Jun 02 2010 - 12:51:24 CDT)
- Re: Visualize intersection of overlapping spheres? (Wed Jun 02 2010 - 12:57:04 CDT)
- Re: CAN ANY ONE HELP ME (Wed Jun 02 2010 - 11:01:15 CDT)
- Re: Interaction Energy (Wed Jun 02 2010 - 11:02:40 CDT)
- Re: Compiling without graphics (Tue Jun 01 2010 - 22:06:55 CDT)
- Re: Tcl-wrapped "lightweight plugin" in C++ (Tue Jun 01 2010 - 11:04:09 CDT)
- Re: Residue Number Assignment by VMD (Fri May 28 2010 - 13:32:38 CDT)
- Re: Tcl-wrapped "lightweight plugin" in C++ (Thu May 27 2010 - 22:16:44 CDT)
- Re: Selecting CUDA devices in VMD 1.8.7 (Wed May 26 2010 - 10:39:53 CDT)
- Re: Problem with display on Intel graphics card (Wed May 26 2010 - 09:46:45 CDT)
- Re: LANG setting needs to be solved in next release.... (Wed May 19 2010 - 08:41:47 CDT)
- Re: regarding fit_angle.tcl (Tue May 18 2010 - 23:40:16 CDT)
- Re: LANG setting needs to be solved in next release.... (Tue May 18 2010 - 22:18:28 CDT)
- Re: regarding fit_angle.tcl (Tue May 18 2010 - 16:02:37 CDT)
- Re: adding water box (Tue May 18 2010 - 12:36:24 CDT)
- Re: Selecting CUDA devices in VMD 1.8.7 (Tue May 11 2010 - 22:07:03 CDT)
- Re: Selecting CUDA devices in VMD 1.8.7 (Tue May 11 2010 - 19:23:48 CDT)
- Re: problem with "animate delete all" (Mon May 10 2010 - 16:20:55 CDT)
- Re: Stereoscopic visualization (Mon May 10 2010 - 11:47:46 CDT)
- Re: Using RMSD in colvar (Mon May 03 2010 - 14:47:55 CDT)
- Re: animation with variable number/names of atoms (Mon May 03 2010 - 14:46:34 CDT)
- Re: Question Regarding PME Set-up (Mon May 03 2010 - 15:08:32 CDT)
- Re: ellipsoidal particles (Mon May 03 2010 - 15:05:03 CDT)
- Re: Tachyon? (Fri Apr 30 2010 - 12:48:26 CDT)
- Re: Tachyon? (Fri Apr 30 2010 - 12:58:46 CDT)
- Re: VMD: set light coordinates (Thu Apr 29 2010 - 12:10:07 CDT)
- Re: Symmetry Tool Error (Draw): invalid command name "getargs" and expected integer but got "" (Wed Apr 28 2010 - 11:13:11 CDT)
- Re: merge structure: error processing angles (Mon Apr 26 2010 - 19:30:05 CDT)
- Re: Problems with licorice representation when rendering 3D PDF for Power Point (Fri Apr 23 2010 - 12:54:49 CDT)
- Re: Problems with licorice representation when rendering 3D PDF for Power Point (Thu Apr 22 2010 - 17:22:33 CDT)
- Re: pbc and measure hbond (Thu Apr 22 2010 - 10:30:17 CDT)
- Re: problem about running (Thu Apr 22 2010 - 10:36:39 CDT)
- Re: run_vmd_tmp: Permission denied (Thu Apr 22 2010 - 10:32:35 CDT)
- Re: Fragments (Thu Apr 22 2010 - 10:26:59 CDT)
- Re: Coloring atoms based on timeframe range? (Thu Apr 22 2010 - 10:11:43 CDT)
- Re: mol urlload -- this doesn't seem to work in Windows (it does seem to work from Linux) (Fri Apr 16 2010 - 18:22:20 CDT)
- Re: mol urlload -- this doesn't seem to work in Windows (it does seem to work from Linux) (Fri Apr 16 2010 - 18:10:22 CDT)
- Re: mol urlload -- this doesn't seem to work in Windows (it does seem to work from Linux) (Fri Apr 16 2010 - 17:00:15 CDT)
- Re: Colouring atoms named with the same first letter (Fri Apr 16 2010 - 16:42:22 CDT)
- Re: VMD has problem displaying glsl rendermode (Mon Apr 12 2010 - 09:10:01 CDT)
- Re: Creating bonds using VMD (Sun Apr 11 2010 - 23:07:21 CDT)
- Re: regarding installation (Sun Apr 11 2010 - 22:25:56 CDT)
- Re: Rotating the current view (Sun Apr 11 2010 - 22:20:06 CDT)
- Re: creating and appending to DCD in VMD (Thu Apr 08 2010 - 16:18:41 CDT)
- Re: problems with hotkeys and "user add key" command (Mon Apr 05 2010 - 16:45:53 CDT)
- Re: RuntimeError: tk.h version (8.4) doesn't match libtk.a version (8.5) (Fri Apr 02 2010 - 00:26:18 CDT)
- Re: can't find file (Mon Mar 29 2010 - 10:11:23 CDT)
- Re: Visualisation of VTF trajectories using VMD under Windows ? (Wed Mar 24 2010 - 11:01:16 CDT)
- Fwd: [ACS award information, March 30 deadline] (Mon Mar 22 2010 - 12:23:45 CDT)
- Re: writepdb using selection form different molecules (Mon Mar 22 2010 - 11:05:53 CDT)
- Re: Running IMD interactivelly under the shell (Thu Mar 18 2010 - 16:16:06 CDT)
- Re: Installing VMD (Tue Mar 16 2010 - 12:55:29 CDT)
- Re: CUDA out of memory (Mon Mar 15 2010 - 10:20:37 CDT)
- Re: Problems with VMD installation Fedora 12 64bits (Sat Mar 13 2010 - 08:50:37 CST)
- Re: CUDA out of memory (Fri Mar 12 2010 - 09:02:19 CST)
- Re: Isosurface wraps in PME Electrostatics calc'n (Tue Mar 09 2010 - 14:40:45 CST)
- Re: Viewing changing beta along a trajectory (Tue Mar 09 2010 - 10:54:06 CST)
- Re: Error vmd and Nvidia Graphik Card (Tue Mar 09 2010 - 10:37:25 CST)
- Re: Viewing changing beta along a trajectory (Tue Mar 09 2010 - 10:39:57 CST)
- Re: Add a surface to a pdb file (Mon Mar 08 2010 - 14:32:10 CST)
- Re: Mean atom position (Mon Mar 08 2010 - 14:34:04 CST)
- Re: CUDA issues (Mon Mar 08 2010 - 11:19:00 CST)
- Re: Add a surface to a pdb file (Mon Mar 08 2010 - 10:04:00 CST)
- Re: Question Regarding User-Defined Trajectories (Mon Mar 08 2010 - 09:37:25 CST)
- Re: Add a surface to a pdb file (Mon Mar 08 2010 - 09:25:27 CST)
- Re: STRIDE error: too many atoms in res (Fri Mar 05 2010 - 14:46:07 CST)
- Re: MDFF plug-in (Fri Mar 05 2010 - 15:12:10 CST)
- Re: VMD-Cones and Povray rendering (Fri Mar 05 2010 - 08:58:23 CST)
- Re: CUDA issues (Thu Mar 04 2010 - 13:54:49 CST)
- Re: 2 questions about "measure sasa" (Thu Mar 04 2010 - 10:50:11 CST)
- Re: CUDA issues (Thu Mar 04 2010 - 10:32:06 CST)
- Re: CUDA issues (Thu Mar 04 2010 - 08:11:53 CST)
- Re: Finding residues with some distance (Wed Mar 03 2010 - 22:35:10 CST)
- Re: Binary VMD buid for Linux, text mode only (Wed Mar 03 2010 - 17:09:42 CST)
- Re: intersurf plugin missing in VMD 1.8.7 ? (Wed Mar 03 2010 - 11:24:15 CST)
- Re: Can anyone help me get the coordinate of the cylinders in the cartoon representation? (Wed Mar 03 2010 - 10:56:00 CST)
- Re: Generating a PSF for a Non-protien (Wed Mar 03 2010 - 10:47:52 CST)
- Re: 3D Connexion - Space Navigator (OSX drivers) (Wed Mar 03 2010 - 10:34:03 CST)
- Re: Running Python within VMD (Wed Mar 03 2010 - 10:41:49 CST)
- Re: Re: display of the atom number beyond 100000 in pdb file (Wed Mar 03 2010 - 01:11:27 CST)
- Re: Bigdcd and Namdenergy batch problem (Thu Feb 25 2010 - 16:46:08 CST)
- Re: 2 questions about "measure sasa" (Thu Feb 25 2010 - 17:00:31 CST)
- Re: Mutator plugin console (Thu Feb 25 2010 - 16:53:16 CST)
- Re: Regarding coordinates transformation (Thu Feb 25 2010 - 16:33:13 CST)
- Re: slower trajectory loading when CUDA support is enabled (Thu Feb 25 2010 - 15:51:50 CST)
- Re: slower trajectory loading when CUDA support is enabled (Thu Feb 25 2010 - 15:01:19 CST)
- Re: Probe orientations in ILS (Mon Feb 22 2010 - 15:41:08 CST)
- Re: VMD water protein anlysis (Mon Feb 22 2010 - 15:45:47 CST)
- Re: gradient background not rendered (Fri Feb 19 2010 - 16:58:46 CST)
- Re: Numeric Library of Python for VMD 1.8.7 (Thu Feb 18 2010 - 00:11:12 CST)
- Re: slowing down movie maker (Wed Feb 17 2010 - 20:43:50 CST)
- Re: producing high quality video on Mac (Wed Feb 17 2010 - 19:57:08 CST)
- Re: creating a povray file (Wed Feb 17 2010 - 16:07:16 CST)
- Re: problem of installing vmd 1.8.7 on Mac osx 10.4.11 (Wed Feb 17 2010 - 11:55:01 CST)
- Re: creating a povray file (Wed Feb 17 2010 - 10:51:44 CST)
- Re: problem of installing vmd 1.8.7 on Mac osx 10.4.11 (Wed Feb 17 2010 - 09:47:58 CST)
- Re: VMD and Amber coordinates (Tue Feb 16 2010 - 13:12:14 CST)
- Re: get view direction (Tue Feb 16 2010 - 10:25:37 CST)
- Re: X_ChangeProperty error (Mon Feb 15 2010 - 16:18:27 CST)
- Re: Mirror reflection (Sat Feb 13 2010 - 01:32:37 CST)
- Re: Converting tracker coordinates to molecule coordinate for selection (Fri Feb 12 2010 - 11:32:37 CST)
- Re: Converting tracker coordinates to molecule coordinate for selection (Fri Feb 12 2010 - 00:26:09 CST)
- Re: invalid command name 'vmdcon' (Fri Feb 12 2010 - 00:21:01 CST)
- Re: psf file generation.? (Fri Feb 12 2010 - 00:00:21 CST)
- Re: how to set PBC for ILS (Wed Feb 10 2010 - 16:59:29 CST)
- Re: how to set PBC for ILS (Wed Feb 10 2010 - 16:43:43 CST)
- Re: Blank thumbnails and non-working snapshots (Tue Feb 09 2010 - 10:07:31 CST)
- Re: Blank thumbnails and non-working snapshots (Tue Feb 09 2010 - 09:44:00 CST)
- Re: Blank thumbnails and non-working snapshots (Tue Feb 09 2010 - 09:29:32 CST)
- Re: Blank thumbnails and non-working snapshots (Tue Feb 09 2010 - 08:12:37 CST)
- Re: how long do ILS runs take? (Mon Feb 08 2010 - 14:48:16 CST)
- Re: VMD, Tachyon and depth of field (Sat Feb 06 2010 - 15:01:42 CST)
- Re: VMD, Tachyon and depth of field (Sat Feb 06 2010 - 11:15:34 CST)
- Re: Changing decimal places in a label? (Thu Feb 04 2010 - 10:48:38 CST)
- Re: Trouble building VMD 1.8.7 on Mac OS X (Thu Feb 04 2010 - 10:06:33 CST)
- Re: Trouble building VMD 1.8.7 on Mac OS X (Thu Feb 04 2010 - 10:14:13 CST)
- Re: Trouble building VMD 1.8.7 on Mac OS X (Wed Feb 03 2010 - 15:55:51 CST)
- Re: import xyz file (Tue Jan 26 2010 - 20:48:30 CST)
- Re: VMD version 1.8.7 (LINUX OpenGL, CUDA) on UBUNTU 9.10 (Mon Jan 25 2010 - 16:32:25 CST)
- Re: SASA and SESA (Sun Jan 24 2010 - 15:47:28 CST)
- Re: SASA and SESA (Sun Jan 24 2010 - 14:51:08 CST)
- Re: autopsf needs at least one atom error (Sun Jan 24 2010 - 14:18:22 CST)
- Re: autopsf generator need at least one atom error (Sun Jan 24 2010 - 13:51:27 CST)
- Re: VMD installation: Windows OpenGL (Sun Jan 24 2010 - 13:33:16 CST)
- Re: Graphics card for molecular graphics (Sun Jan 24 2010 - 13:01:36 CST)
- Re: Syntax and capabilities of writetrr (Fri Jan 22 2010 - 10:45:53 CST)
- Re: water in a certein box (Thu Jan 21 2010 - 23:43:32 CST)
- Re: sasa function (Thu Jan 21 2010 - 14:09:13 CST)
- Re: bad text display in tk console (ubuntu 8.04 VMD 1.8.7 linux 32 bit) (Wed Jan 20 2010 - 14:12:07 CST)
- Re: Re: namd-l: NAMD ibverbs not working on new cluster (Wed Jan 20 2010 - 12:46:35 CST)
- Re: bad text display in tk console (ubuntu 8.04 VMD 1.8.7 linux 32 bit) (Wed Jan 20 2010 - 12:37:38 CST)
- Re: bad text display in tk console (ubuntu 8.04 VMD 1.8.7 linux 32 bit) (Wed Jan 20 2010 - 12:24:16 CST)
- Re: bad text display in tk console (ubuntu 8.04 VMD 1.8.7 linux 32 bit) (Wed Jan 20 2010 - 10:24:45 CST)
- Re: 3D Stereo : Windows 7, nVIDIA GEFORCE (Wed Jan 20 2010 - 10:05:14 CST)
- Re: 3D glasses with LCD (Wed Jan 20 2010 - 10:08:24 CST)
- Re: visualizing APBS output (Tue Jan 19 2010 - 22:07:43 CST)
- Re: 3D Stereo : Windows 7, nVIDIA GEFORCE (Tue Jan 19 2010 - 17:57:23 CST)
- Re: visualizing APBS output (Tue Jan 19 2010 - 13:50:55 CST)
- Re: bad text display in tk console (ubuntu 8.04 VMD 1.8.7 linux 32 bit) (Fri Jan 15 2010 - 12:01:17 CST)
- Re: Re: VMD CVS Request for Richard Cook (Thu Jan 14 2010 - 23:27:51 CST)
- Re: APBS tutorial link broken (Thu Jan 14 2010 - 17:11:56 CST)
- Re: Re: VMD CVS Request for Richard Cook (Thu Jan 14 2010 - 16:44:32 CST)
- Re: vmdcollab in VMD (Wed Jan 13 2010 - 15:55:01 CST)
- Re: Maestro file export (Tue Jan 12 2010 - 16:46:07 CST)
- Re: display surface amino acid beads (Tue Jan 12 2010 - 14:25:28 CST)
- Re: conflict between VMD and Netbeans IDE on MacOSX (Tue Jan 12 2010 - 14:13:30 CST)
- Re: Compiling VMD plugins on Windows? (Tue Jan 12 2010 - 10:51:39 CST)
- Re: vmd 1.8.7CUDA/1.8.7/1.8.6 can not start (Tue Jan 12 2010 - 10:27:04 CST)
- Re: vmd 1.8.7CUDA/1.8.7/1.8.6 can not start (Wed Jan 06 2010 - 12:56:47 CST)
- Re: New Cartoon representation problem (Wed Jan 06 2010 - 12:49:18 CST)
- Re: VMD hangs up with a file size ~ 1.2 GB ? (Wed Jan 06 2010 - 10:06:34 CST)
- Re: VMD hangs up with a file size ~ 1.2 GB ? (Wed Jan 06 2010 - 10:10:51 CST)
- Re: slow visualization using molecular representations with VMD 1.8.7 on mac (Tue Jan 05 2010 - 08:59:04 CST)
- Re: VMD-Xplor interface problem (Sun Jan 03 2010 - 21:38:24 CST)
- Re: vmd 1.8.7CUDA/1.8.7/1.8.6 can not start (Sun Jan 03 2010 - 17:46:21 CST)
- Re: PDB file (Sun Jan 03 2010 - 02:23:41 CST)
- Re: vmd 1.8.7CUDA/1.8.7/1.8.6 can not start (Sun Jan 03 2010 - 01:56:14 CST)
- Re: reply (Sat Jan 02 2010 - 08:53:01 CST)
- Re: vmd installation in linux (Sat Jan 02 2010 - 01:08:58 CST)
- Re: Re: Re: Superposition of Multiple Trajectory Timesteps (Fri Jan 01 2010 - 17:43:58 CST)
- Re: installation problem (Wed Dec 30 2009 - 13:18:54 CST)
- Re: Re: VMD CVS Request for Richard Cook (Wed Dec 30 2009 - 13:03:05 CST)
- Re: Problem when using VMD Python Library (Wed Dec 30 2009 - 12:46:36 CST)
- Re: IMD in VMD (Wed Dec 30 2009 - 12:39:10 CST)
- Re: IMD in VMD (Wed Dec 30 2009 - 12:55:28 CST)
- Re: installation problem (Wed Dec 30 2009 - 12:53:37 CST)
- Re: Problem generating psf file in psfgen (Sat Dec 19 2009 - 01:52:07 CST)
- Re: vmd won't display in lines (Fri Dec 18 2009 - 16:32:12 CST)
- Re: Re: VMD CVS Request for Richard Cook (Thu Dec 17 2009 - 19:52:56 CST)
- Re: Re: VMD CVS Request for Richard Cook (Thu Dec 17 2009 - 19:20:35 CST)
- Re: Re: VMD CVS Request for Richard Cook (Thu Dec 17 2009 - 19:05:29 CST)
- Re: Re: VMD CVS Request for Richard Cook (Thu Dec 17 2009 - 17:03:07 CST)
- Re: VMD plugin for abinit (Thu Dec 17 2009 - 13:38:12 CST)
- Re: Fwd: Fwd: Re: namd-l: Fwd: conf file for coarse grained simulation (Thu Dec 17 2009 - 13:33:34 CST)
- Re: Request for information (Thu Dec 17 2009 - 13:29:52 CST)
- Re: File owner/group settings after installing precompiled VMD. (Thu Dec 17 2009 - 00:24:11 CST)
- Re: Issues with flickering display using VMD 1.8.7 displaying over X11 to remote Mac (Wed Dec 16 2009 - 23:55:15 CST)
- Re: VMD on AIX --- successful build, failed execution (Wed Dec 16 2009 - 10:56:56 CST)
- Re: VMD plugin: filenames supposed to have dot in it?!?! (Wed Dec 16 2009 - 10:51:29 CST)
- Re: Graphical Representations doesn't recognize chain ID z (Wed Dec 16 2009 - 10:21:12 CST)
- Re: Issues with flickering display using VMD 1.8.7 displaying over X11 to remote Mac (Tue Dec 15 2009 - 15:20:01 CST)
- Re: error in rmsd.tcl for tutorial (Fri Dec 11 2009 - 16:12:22 CST)
- Re: Re: vmd 1.8.7 on Intel 64 bit: segmentation fault (Fri Dec 11 2009 - 14:34:23 CST)
- Re: error in rmsd.tcl for tutorial (Thu Dec 10 2009 - 10:28:16 CST)
- Re: Re: vmd 1.8.7 on Intel 64 bit: segmentation fault" (Thu Dec 10 2009 - 10:15:06 CST)
- Re: vmd-1.8.7 building from source ->few plugins "package could not be loaded" (Wed Dec 09 2009 - 13:57:18 CST)
- Re: A VMD script to emulate the Matlab "jet" colorscale (Wed Dec 09 2009 - 11:48:11 CST)
- Re: desmond plugin (Wed Dec 09 2009 - 09:11:33 CST)
- Re: RMSD for individual residue for a tetarmer (Wed Dec 09 2009 - 00:25:01 CST)
- A VMD script to emulate the Matlab "jet" colorscale (Tue Dec 08 2009 - 16:49:40 CST)
- Re: vmd-1.8.7 building from source ->few plugins "package could not be loaded" (Tue Dec 08 2009 - 14:44:06 CST)
- Re: Re: vmd 1.8.7 on Intel 64 bit: segmentation fault (Tue Dec 08 2009 - 12:34:57 CST)
- Re: Re: vmd 1.8.7 on Intel 64 bit: segmentation fault (however: 1.8.6 works!) (Tue Dec 08 2009 - 01:17:25 CST)
- Re: vmd 1.8.7 on Intel 64 bit: segmentation fault (Mon Dec 07 2009 - 21:45:44 CST)
- Re: vmd-1.8.7 building from source ->few plugins "package could not be loaded" (Mon Dec 07 2009 - 14:43:51 CST)
- Re: FW: VMD 1.8.7 build with VRPN 7.23 (Mon Dec 07 2009 - 14:42:26 CST)
- Re: desmond plugin (Fri Dec 04 2009 - 17:28:31 CST)
- Re: regarding generating movie (Fri Dec 04 2009 - 14:06:51 CST)
- Re: desmond plugin (Fri Dec 04 2009 - 13:54:38 CST)
- Re: desmond plugin (Fri Dec 04 2009 - 10:43:25 CST)
- Re: ccp4 in vmd (Wed Dec 02 2009 - 22:41:17 CST)
- Re: Drawing cylinder in VMD (Wed Dec 02 2009 - 20:36:13 CST)
- Re: Drawing cylinder in VMD (Wed Dec 02 2009 - 17:35:04 CST)
- Re: building VMD is tricky -please help (Wed Dec 02 2009 - 13:39:53 CST)
- Re: VMD 1.8.7 amd64 python libs? (Wed Dec 02 2009 - 11:48:41 CST)
- Re: VMD 1.8.7 amd64 python libs? (Wed Dec 02 2009 - 11:16:06 CST)
- Re: VMD 1.8.7 amd64 python libs? (Wed Dec 02 2009 - 10:29:56 CST)
- Re: building VMD is tricky -please help (Tue Dec 01 2009 - 19:51:37 CST)
- Re: building VMD is tricky -please help (Tue Dec 01 2009 - 15:27:37 CST)
- Re: building VMD is tricky -please help (Tue Dec 01 2009 - 14:03:53 CST)
- Re: Secondary structure with Timeline (Tue Dec 01 2009 - 10:53:00 CST)
- Re: generating .xsc file from .dcd (Tue Dec 01 2009 - 10:07:57 CST)
- Re: building VMD is tricky -please help (Tue Dec 01 2009 - 10:05:01 CST)
- Re: Polyhedra with two selections? (Mon Nov 30 2009 - 09:54:00 CST)
- Re: desmond plug-in error (Thu Nov 26 2009 - 14:16:26 CST)
- Re: GRID maps visualization problems (Wed Nov 25 2009 - 15:05:30 CST)
- Re: Move molecule to the origin of coordinate system (Wed Nov 25 2009 - 11:22:07 CST)
- Re: Using class UIVR (Tue Nov 24 2009 - 11:06:52 CST)
- Re: GRID maps visualization problems (Tue Nov 24 2009 - 09:12:30 CST)
- Re: VMD 1.8.7 amd64 python libs? (Mon Nov 23 2009 - 17:30:30 CST)
- Re: Using class UIVR (Mon Nov 23 2009 - 17:15:49 CST)
- Re: aquire coordinates from the points of the solvent representation (Sat Nov 21 2009 - 01:01:15 CST)
- Re: VMD video-projection in 3D (Mon Nov 16 2009 - 15:22:41 CST)
- Re: Multiseq question (Mon Nov 16 2009 - 15:28:45 CST)
- Re: (Fri Nov 13 2009 - 08:19:04 CST)
- Re: Fwd: version 1.8.7 for amd64 and cg tools (Thu Nov 12 2009 - 23:40:32 CST)
- Re: version 1.8.7 for amd64 and cg tools (Thu Nov 12 2009 - 23:20:18 CST)
- Re: problems displaying newcartoon representation (Thu Nov 12 2009 - 12:24:42 CST)
- Re: Stop using directory from previous session (Wed Nov 11 2009 - 12:38:08 CST)
- Re: vmd bug in ubuntu 9.10 (Wed Nov 11 2009 - 11:15:09 CST)
- Re: Stop using directory from previous session (Wed Nov 11 2009 - 11:13:36 CST)
- Re: bad_alloc error (Wed Nov 11 2009 - 10:12:12 CST)
- Re: bad_alloc error (Wed Nov 11 2009 - 09:20:20 CST)
- Re: Problem with exit button (Tue Nov 10 2009 - 18:41:04 CST)
- Re: Problem with exit button (Tue Nov 10 2009 - 16:33:36 CST)
- Re: rmsd calculation and plot (Tue Nov 10 2009 - 16:25:00 CST)
- Re: VMD autopsfgen and Mg2+ (Fri Nov 06 2009 - 09:55:29 CST)
- Re: Question about Keyboaerd events send from other PC (Thu Nov 05 2009 - 08:46:50 CST)
- Re: VMD autopsfgen and Mg2+ (Wed Nov 04 2009 - 09:49:17 CST)
- Re: radius of gyration units (Tue Nov 03 2009 - 16:32:20 CST)
- Re: Matrix: Warning: no convergence (0.00000000<390.26229858 after 1000 iterations). (Tue Nov 03 2009 - 16:18:43 CST)
- Re: radius of gyration units (Tue Nov 03 2009 - 16:13:10 CST)
- Re: running under Shell using VMD (Tue Nov 03 2009 - 09:11:05 CST)
- Re: Using Tcl functions in a C-plugin (Mon Nov 02 2009 - 14:08:27 CST)
- Re: dll by c++ cannot be recognized by VMD tk console ? (Mon Nov 02 2009 - 13:57:35 CST)
- Re: memory issues (Mon Nov 02 2009 - 13:50:12 CST)
- Re: movie rendering (Mon Nov 02 2009 - 13:54:09 CST)
- Re: Unable to find Stride output file: /usr/tmp/... (Tue Oct 27 2009 - 12:37:28 CDT)
- Re: lammpstrj file as pdb (Tue Oct 27 2009 - 12:06:56 CDT)
- Re: Unable to find Stride output file: /usr/tmp/... (Tue Oct 27 2009 - 12:56:51 CDT)
- Re: Unable to find Stride output file: /usr/tmp/... (Tue Oct 27 2009 - 12:45:16 CDT)
- Re: lammpstrj file as pdb (Tue Oct 27 2009 - 12:21:49 CDT)
- Re: Tachyon Rendering (Tue Oct 27 2009 - 12:05:06 CDT)
- Re: Loading trajectory into Multiseq (Mon Oct 26 2009 - 10:22:21 CDT)
- Re: MDFF sim Problem (Mon Oct 26 2009 - 10:04:16 CDT)
- Re: catdcd (Fri Oct 23 2009 - 13:44:52 CDT)
- Re: CatDCD Desmond Support (Fri Oct 23 2009 - 13:44:15 CDT)
- Re: Selections based on "bonded to" (Fri Oct 23 2009 - 13:39:08 CDT)
- Re: Selections based on "bonded to" (Fri Oct 23 2009 - 11:13:51 CDT)
- Re: Bugs ? Representation window does not update new material (Fri Oct 23 2009 - 11:06:20 CDT)
- Re: Reading output of quantum packages and plotting orbitals (Fri Oct 23 2009 - 09:49:38 CDT)
- Re: Bugs ? Representation window does not update new material (Fri Oct 23 2009 - 09:56:47 CDT)
- Re: Problem with vmd and ssh -X (Fri Oct 23 2009 - 09:52:29 CDT)
- Re: Arbitrary values of isosurface (Thu Oct 22 2009 - 17:10:14 CDT)
- Re: Problem with vmd and ssh -X (Thu Oct 22 2009 - 10:58:34 CDT)
- Re: Cuda an a cluster ? (Thu Oct 22 2009 - 11:04:45 CDT)
- Re: questions (Wed Oct 21 2009 - 16:50:06 CDT)
- Re: Translating an atom along a specific direction and saving the pdb files (Tue Oct 20 2009 - 09:39:48 CDT)
- Re: MDFF sim Problem (Mon Oct 19 2009 - 15:27:43 CDT)
- Re: mac tk widgets (Mon Oct 12 2009 - 15:55:19 CDT)
- Re: Problem using psfgen and carbohydrate charmm parameters. (Mon Oct 12 2009 - 15:50:56 CDT)
- Re: VMD 1.8.7 CUDA on Mac OS X 10.6.1 (Mon Oct 12 2009 - 15:36:23 CDT)
- Re: Install VMD binary with CUDA, CUDA card detected but then error "no CUDA-capable device is available"--Solved (Sun Oct 11 2009 - 22:43:17 CDT)
- Re: CatDCD Desmond Support (Wed Oct 07 2009 - 13:24:00 CDT)
- Re: text timer in vmd animations (Mon Oct 05 2009 - 22:22:10 CDT)
- Re: multiseq and fasta files from pdb (Mon Oct 05 2009 - 21:14:10 CDT)
- Re: Reading output of quantum packages and plotting orbitals (Mon Oct 05 2009 - 21:10:49 CDT)
- Re: RE: Problems with Stride (Mon Oct 05 2009 - 21:08:57 CDT)
- Re: Rx for VMD crashing PC? (Mon Oct 05 2009 - 20:46:10 CDT)
- Re: How to generate a monolayer in VMD (Mon Oct 05 2009 - 20:54:03 CDT)
- Re: Problems with Stride (Fri Oct 02 2009 - 16:22:26 CDT)
- Re: RE: Problems with Stride (Fri Oct 02 2009 - 16:24:48 CDT)
- Re: Rx for VMD crashing PC? (Fri Oct 02 2009 - 10:26:13 CDT)
- Re: Representation problem (Tue Sep 29 2009 - 17:38:21 CDT)
- Re: Representation problem (Mon Sep 28 2009 - 16:34:18 CDT)
- Re: model protein chain not displayed properly (Mon Sep 28 2009 - 15:08:22 CDT)
- Re: text timer in vmd animations (Mon Sep 28 2009 - 10:07:31 CDT)
- Re: Overlaying 2 structures (Fri Sep 25 2009 - 22:17:31 CDT)
- Re: Paratool: QMTool::bondlist error message (Fri Sep 25 2009 - 22:09:51 CDT)
- Re: "Lines" representation does not show (Fri Sep 25 2009 - 10:55:46 CDT)
- Re: ERROR) Error reading bond information. (Fri Sep 25 2009 - 11:03:47 CDT)
- Re: ERROR) Error reading bond information. (Fri Sep 25 2009 - 07:41:11 CDT)
- Re: Frame creation (Thu Sep 24 2009 - 10:02:58 CDT)
- Re: "Lines" representation does not show (Thu Sep 24 2009 - 09:08:57 CDT)
- Re: problem in reading .nc NETCDF FILE (Thu Sep 24 2009 - 08:18:59 CDT)
- Web-based Flash/Quicktime 3-D VMD/Tachyon renderings of PDB structures (Wed Sep 23 2009 - 15:45:30 CDT)
- Re: double bonds (Wed Sep 23 2009 - 13:17:09 CDT)
- Re: "Lines" representation does not show (Wed Sep 23 2009 - 11:03:05 CDT)
- [carlos.simmerling@gmail.com: ACS awards application announcements] (Mon Sep 21 2009 - 12:54:04 CDT)
- Re: Resize window from TCL (Mon Sep 21 2009 - 12:48:08 CDT)
- Re: Re: automated loading (Mon Sep 21 2009 - 11:17:21 CDT)
- Re: label options (Sun Sep 20 2009 - 15:35:25 CDT)
- Re: Install VMD binary with CUDA, CUDA card detected but then error "no CUDA-capable device is available" (Thu Sep 17 2009 - 21:34:36 CDT)
- Re: Reading new amber prmtop formats. (Thu Sep 17 2009 - 12:50:48 CDT)
- Re: Average structure and NamdEnergy (Thu Sep 17 2009 - 11:35:58 CDT)
- Re: Install VMD with plugins to NAMD (Wed Sep 16 2009 - 23:02:35 CDT)
- Re: Install VMD with plugins to NAMD (Wed Sep 16 2009 - 22:04:35 CDT)
- Re: DLP Stereo and VR toolkit integration with vmd (Wed Sep 16 2009 - 16:10:38 CDT)
- Re: Reading new amber prmtop formats. (Wed Sep 16 2009 - 16:08:07 CDT)
- Re: Reading new amber prmtop formats. (Wed Sep 16 2009 - 13:46:26 CDT)
- Re: PSF for AMBER top + crd files (Tue Sep 15 2009 - 16:56:34 CDT)
- Re: Segmentation fault on linux Fedora 11 (Mon Sep 14 2009 - 14:08:35 CDT)
- Re: VMD and NetCDF under Windows Vista 32bit (Mon Sep 14 2009 - 14:10:54 CDT)
- Re: VMD on Suse 11.1 w/ NVIDIA dies. (Thu Sep 10 2009 - 17:24:03 CDT)
- Re: Question about PSF generation (Thu Sep 10 2009 - 11:04:05 CDT)
- Re: How to select a hetatom while get rid of N-term ACE in atomselect (Thu Sep 10 2009 - 10:56:08 CDT)
- Re: (Thu Sep 10 2009 - 11:10:05 CDT)
- Re: (Wed Sep 09 2009 - 14:14:08 CDT)
- Re: (Wed Sep 09 2009 - 14:14:58 CDT)
- Re: catdcd in Windows (Wed Sep 09 2009 - 13:38:54 CDT)
- Re: "measure fit" problem (Wed Sep 09 2009 - 13:34:18 CDT)
- Re: VMD on Suse 11.1 w/ NVIDIA dies. (Tue Sep 08 2009 - 10:57:12 CDT)
- Re: VMD on MacOSX 10.6 Snow Leopard: fast (Mon Sep 07 2009 - 16:31:54 CDT)
- Re: Main menu not compiled? (Fri Sep 04 2009 - 09:27:33 CDT)
- Re: Bond representation of coarse grained molecules (Fri Sep 04 2009 - 09:49:26 CDT)
- Re: 3D pdf problem (Mon Aug 31 2009 - 14:50:33 CDT)
- Re: VMD, MultiSeq, STAMP (Mon Aug 31 2009 - 14:37:44 CDT)
- Re: 3D pdf problem (Mon Aug 31 2009 - 11:51:01 CDT)
- Re: superimpose two proteins with different residue numbers (Mon Aug 31 2009 - 11:34:03 CDT)
- Re: Bond in pbc condition (Fri Aug 28 2009 - 10:22:06 CDT)
- Re: viewing MOs (Fri Aug 28 2009 - 09:55:37 CDT)
- Re: drawing waterbox (Thu Aug 27 2009 - 10:29:08 CDT)
- Re: superimposing proteins with non-similar coordinates (Wed Aug 26 2009 - 16:31:46 CDT)
- Re: drawing waterbox (Wed Aug 26 2009 - 13:29:10 CDT)
- Re: using VMD 1.8.7 on a Mac (Tue Aug 25 2009 - 10:34:02 CDT)
- Re: using VMD 1.8.7 on a Mac (Mon Aug 24 2009 - 15:42:49 CDT)
- Re: using VMD 1.8.7 on a Mac (Sun Aug 23 2009 - 21:32:18 CDT)
- Re: VMD: 1.8.7 win32 opengl runtime error (Fri Aug 21 2009 - 21:58:25 CDT)
- Re: NAMD tutorial for Windows problem reading pgn file from vmd tkconsole (Fri Aug 21 2009 - 16:30:30 CDT)
- Re: VMD: 1.8.7 win32 opengl runtime error (Fri Aug 21 2009 - 09:56:33 CDT)
- Re: Rendering polyhedra with POV-Ray (Tue Aug 18 2009 - 10:59:37 CDT)
- Re: Rendering polyhedra with POV-Ray (Tue Aug 18 2009 - 10:23:05 CDT)
- Re: Antw: Re: CUDA Support (Tue Aug 18 2009 - 01:18:10 CDT)
- Re: Cionize on mac cuda (Mon Aug 17 2009 - 13:49:09 CDT)
- Re: can we control the number and distribution of solvate molecular (Wed Aug 12 2009 - 16:14:30 CDT)
- Re: positioning of a compound (Wed Aug 12 2009 - 14:59:04 CDT)
- Re: Turn off the autobond feature in VMD (Wed Aug 12 2009 - 09:58:01 CDT)
- Re: CUDA Support (Wed Aug 12 2009 - 07:55:30 CDT)
- Re: HRTEM (Fri Aug 07 2009 - 12:22:53 CDT)
- Re: How to compile the source of VMD1.8.7 on linux system (Fri Aug 07 2009 - 00:24:09 CDT)
- Re: Cionize on mac cuda (Thu Aug 06 2009 - 14:48:09 CDT)
- Re: clusters visualization with colours (Thu Aug 06 2009 - 11:11:17 CDT)
- Re: NEW New (Thu Aug 06 2009 - 10:31:36 CDT)
- Re: Cionize on mac cuda (Wed Aug 05 2009 - 20:43:04 CDT)
- Announce: VMD 1.8.7 released (Mon Aug 03 2009 - 14:21:59 CDT)
- Re: visualization problem (Fri Jul 31 2009 - 10:41:30 CDT)
- Re: File to benchmark a new GPU system (Mon Jul 27 2009 - 16:39:45 CDT)
- Re: TkConsole not working (Thu Jul 23 2009 - 14:52:24 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer (Thu Jul 23 2009 - 12:49:24 CDT)
- Re: need convert when using VMD to make a movie under Mac (Tue Jul 21 2009 - 01:13:44 CDT)
- Re: VMD on laptop with ATI Radeon 3650 (Mon Jul 20 2009 - 16:09:18 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer (Mon Jul 20 2009 - 11:43:38 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer (Mon Jul 20 2009 - 11:29:20 CDT)
- Re: algorithm for command *within* (Thu Jul 16 2009 - 11:32:50 CDT)
- Re: make movie w/ VMD in SUSE environment (Thu Jul 16 2009 - 11:27:08 CDT)
- Re: make movie w/ VMD in SUSE environment (Thu Jul 16 2009 - 11:00:29 CDT)
- Re: A problem on SASA measure (Wed Jul 15 2009 - 16:03:25 CDT)
- Re: .xst file disagrees with pbctools/.dcd file - what are the limitations of pbctools? (Wed Jul 15 2009 - 14:32:57 CDT)
- Re: Can I build a structure by VMD? (Wed Jul 15 2009 - 14:36:56 CDT)
- Re: VMD and X forwarding to MacOS 10.5.7 (Wed Jul 15 2009 - 13:48:13 CDT)
- Re: scan interleaved stereo on Zalman M220W monitor (Tue Jul 14 2009 - 13:25:50 CDT)
- Re: measure rmsf (Fri Jul 10 2009 - 13:31:54 CDT)
- Re: measure rmsf (Fri Jul 10 2009 - 10:42:33 CDT)
- Re: GPL compatible PluginMgr/vmddlopen (Mon Jul 06 2009 - 21:45:27 CDT)
- Re: Hardware for NAMD / VMD machine (Mon Jul 06 2009 - 11:04:30 CDT)
- Re: GPL compatible PluginMgr/vmddlopen (Sun Jul 05 2009 - 20:14:35 CDT)
- Re: selection update (Fri Jun 26 2009 - 14:26:51 CDT)
- Re: Rejecting plugin... (Fri Jun 26 2009 - 14:28:30 CDT)
- Re: Multimodel PDB files with Different Models? (Thu Jun 25 2009 - 13:11:30 CDT)
- Re: constant region selection for animation (Thu Jun 25 2009 - 10:03:21 CDT)
- Re: vmd 1.8.7 not spawn new console: feature,bug, or just different? (Thu Jun 25 2009 - 01:06:02 CDT)
- Re: Rejecting plugin... (Wed Jun 24 2009 - 22:31:15 CDT)
- Re: "no CUDA accelerator devices available", Nvidia GeForce 9600 GT card (Wed Jun 24 2009 - 22:17:52 CDT)
- Re: residue index problem (Wed Jun 24 2009 - 16:40:44 CDT)
- Re: trace the distance between center of mass of one certain residue and the other (Wed Jun 24 2009 - 15:34:05 CDT)
- Re: joystick, win32 simple interface (Wed Jun 24 2009 - 15:50:18 CDT)
- Re: vmd 1.8.7 not spawn new console: feature,bug, or just different? (Wed Jun 24 2009 - 15:24:32 CDT)
- Re: Rejecting plugin... (Wed Jun 24 2009 - 14:34:53 CDT)
- Re: Plugins: plz add one more conversion to unit_conversion.h (Mon Jun 22 2009 - 14:54:33 CDT)
- Re: VMD 1.8.7 beta5 probs with NVIDIA Quadro FX3450/4000 graphic card (Mon Jun 22 2009 - 09:29:11 CDT)
- Re: transformation matrix (Thu Jun 18 2009 - 15:39:12 CDT)
- Re: "Re: ABINIT plugin ready for testing: can read GEO and DEN files. (Thu Jun 18 2009 - 09:59:46 CDT)
- Re: Re: ABINIT plugin ready for testing: can read GEO and DEN files. (Wed Jun 17 2009 - 11:33:20 CDT)
- Re: Re: ABINIT plugin ready for testing: can read GEO and DEN files. (Tue Jun 16 2009 - 21:33:31 CDT)
- Re: movie maker (Tue Jun 16 2009 - 09:59:26 CDT)
- Re: Molscripts (Tue Jun 16 2009 - 09:23:24 CDT)
- Re: using atomselect to write a set of atoms and not some residue whose residue numbers are in a list (Mon Jun 15 2009 - 10:38:18 CDT)
- Re: ABINIT plugin ready for testing: can read GEO and DEN files. (Mon Jun 15 2009 - 09:52:21 CDT)
- Re: VMD and X forwarding to MacOS 10.5.7 (Fri Jun 12 2009 - 11:17:22 CDT)
- Re: Transparency settings (Fri Jun 12 2009 - 10:32:15 CDT)
- Re: VMD and X forwarding to MacOS 10.5.7 (Fri Jun 12 2009 - 10:36:49 CDT)
- Re: VMD and X forwarding to MacOS 10.5.7 (Fri Jun 12 2009 - 10:02:33 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file (Fri Jun 12 2009 - 09:44:29 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file (Thu Jun 11 2009 - 21:30:22 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file (Thu Jun 11 2009 - 08:59:54 CDT)
- Re: FW: Unable to render electrostatic potential cube files with most non-HF densities (Thu Jun 11 2009 - 08:54:59 CDT)
- Re: namdplot 1.0 (Wed Jun 10 2009 - 23:03:34 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file (Wed Jun 10 2009 - 11:47:28 CDT)
- Re: plugin: can I load volumetric data as frames (i.e. timesteps)? (Wed Jun 10 2009 - 11:12:17 CDT)
- Re: Transparency settings (Wed Jun 10 2009 - 10:57:58 CDT)
- Re: vmd cannot be launched after successful installation (Wed Jun 10 2009 - 11:02:58 CDT)
- Re: NewCartoon not among Drawing methods (Wed Jun 10 2009 - 10:44:13 CDT)
- Re: NewCartoon not among Drawing methods (Wed Jun 10 2009 - 09:49:59 CDT)
- Re: plugin: can I load volumetric data as frames (i.e. timesteps)? (Wed Jun 10 2009 - 09:43:20 CDT)
- Re: NewCartoon not among Drawing methods (Wed Jun 10 2009 - 10:06:53 CDT)
- Re: NAMDEnergy (Wed Jun 10 2009 - 09:47:29 CDT)
- Re: plugin: can I load volumetric data as frames (i.e. timesteps)? (Wed Jun 10 2009 - 07:24:05 CDT)
- Re: bonds not created as desired (Tue Jun 09 2009 - 14:55:44 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file (Tue Jun 09 2009 - 11:26:01 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file (Tue Jun 09 2009 - 09:48:41 CDT)
- Re: Re: crystal eyes vmd (Tue Jun 09 2009 - 09:47:17 CDT)
- Re: MSMS installation (Mon Jun 08 2009 - 16:09:42 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file (Mon Jun 08 2009 - 16:15:15 CDT)
- Re: Re: crystal eyes vmd (Mon Jun 08 2009 - 09:40:36 CDT)
- Re: Re: crystal eyes vmd (Mon Jun 08 2009 - 08:43:56 CDT)
- Re: Re: crystal eyes vmd (Mon Jun 08 2009 - 09:00:54 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file (Fri Jun 05 2009 - 11:04:08 CDT)
- Re: Energy (Wed Jun 03 2009 - 22:04:04 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file (Wed Jun 03 2009 - 14:05:48 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file (Tue Jun 02 2009 - 14:01:12 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file (Tue Jun 02 2009 - 11:15:39 CDT)
- Re: Accelerating your VMD 1.8.7 calculations with an NVIDIA Tesla GPU (Tue Jun 02 2009 - 10:25:36 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file (Tue Jun 02 2009 - 10:39:18 CDT)
- Re: VMD HOLE Result (Tue Jun 02 2009 - 09:53:26 CDT)
- Re: APBS error : Cannot read output file (Tue Jun 02 2009 - 09:55:51 CDT)
- VMD 1.8.7 beta 5 posted for download (Mon Jun 01 2009 - 16:11:31 CDT)
- Re: Linking to molfile_plugin libraries (Fri May 29 2009 - 13:24:30 CDT)
- Re: Linking to molfile_plugin libraries (Fri May 29 2009 - 13:07:26 CDT)
- Re: Macbook and VMD Tk windows (Fri May 29 2009 - 09:17:20 CDT)
- Re: VMD crash (Thu May 28 2009 - 19:32:44 CDT)
- Re: statistics in VMD (Thu May 28 2009 - 19:25:09 CDT)
- Re: VMD crash (Thu May 28 2009 - 15:13:22 CDT)
- Re: main window missing? (Wed May 27 2009 - 16:00:55 CDT)
- Re: main window missing? (Wed May 27 2009 - 15:30:21 CDT)
- Re: problem with dispdev (Wed May 27 2009 - 16:02:38 CDT)
- Need testers for VMD/Tachyon volumetric coloring feature :-) (Wed May 27 2009 - 14:37:59 CDT)
- Re: default colors (Tue May 26 2009 - 17:03:39 CDT)
- Re: Offset for frame ids in dcd trajectory (Tue May 26 2009 - 15:32:40 CDT)
- Re: new problem (Tue May 26 2009 - 11:05:07 CDT)
- Re: Isosurface and Fieldlines Not rendered in colour (Tue May 26 2009 - 02:42:15 CDT)
- Re: Operations with MD frames - acquiring time infromation (Mon May 25 2009 - 23:44:49 CDT)
- Re: Plugin: molfile_plugin_t filename_extension; problem and bug... (Mon May 25 2009 - 23:28:34 CDT)
- Re: VMD crashes in VolumeSlice representation (Mon May 25 2009 - 23:20:24 CDT)
- Re: "Determine file type" list is far too long... (Mon May 25 2009 - 23:09:16 CDT)
- Re: RMSF (Fri May 22 2009 - 10:57:39 CDT)
- Re: default colors (Wed May 20 2009 - 21:11:25 CDT)
- Re: New vmd Windows version crash (Wed May 20 2009 - 20:57:19 CDT)
- Re: VMD 1.8.7b3 and desktop effects on Fedora 10 (Wed May 20 2009 - 20:54:32 CDT)
- Re: Why is the 'antialias' option is grey? (Wed May 20 2009 - 06:58:21 CDT)
- Re: New vmd Windows version crash (Wed May 20 2009 - 06:55:12 CDT)
- Re: New vmd Windows version crash (Wed May 20 2009 - 06:59:46 CDT)
- Re: New vmd Windows version crash (Tue May 19 2009 - 21:08:44 CDT)
- Re: New vmd Windows version crash (Tue May 19 2009 - 21:02:57 CDT)
- Re: Align mistake (Tue May 19 2009 - 20:32:52 CDT)
- Re: NVidia GeForce 3D Vision (Tue May 19 2009 - 20:28:10 CDT)
- VMD 1.8.7 beta 3 posted for download... (Mon May 18 2009 - 15:24:21 CDT)
- Re: Outline rendering style with Tachyon (Mon May 18 2009 - 14:47:33 CDT)
- Re: resolved [Re: vmd / python / f10] (Mon May 18 2009 - 00:15:06 CDT)
- Re: vmd / python / f10 (Sun May 17 2009 - 12:20:39 CDT)
- Re: vmd / python / f10 (Sat May 16 2009 - 18:57:24 CDT)
- Re: adding bonds with the mouse and writing psf (Thu May 14 2009 - 20:59:20 CDT)
- Re: a small bug in solvate 1.3 (Thu May 14 2009 - 20:45:17 CDT)
- Re: Color problem. (Wed May 13 2009 - 16:17:12 CDT)
- Re: Can bonds radius be controlled by tcl command? (Wed May 13 2009 - 16:19:16 CDT)
- VMD 1.8.7 beta 2 posted for download (Wed May 13 2009 - 14:09:40 CDT)
- Re: vdna 2.0 for VMD (Tue May 12 2009 - 16:04:44 CDT)
- Re: volmap question (Fri May 08 2009 - 09:49:33 CDT)
- Re: BMP snapshot (Thu May 07 2009 - 14:24:57 CDT)
- Re: Display not updated when using move() from Python in VMD 1.8.6 (Thu May 07 2009 - 10:19:09 CDT)
- Re: Satellite tobacco mosaic virus images making by VMD (Tue May 05 2009 - 10:28:42 CDT)
- Re: Selection "@myselection" (Tue May 05 2009 - 10:17:57 CDT)
- Re: VMD 1.8.7beta1 doesn't close OpenGL window (Tue May 05 2009 - 09:27:10 CDT)
- Re: Satellite tobacco mosaic virus images making by VMD (Tue May 05 2009 - 09:24:32 CDT)
- Re: Solvation energies using implicit ligand sampling (Mon May 04 2009 - 13:49:44 CDT)
- Re: VMD on Cray/CNL (Fri May 01 2009 - 10:36:23 CDT)
- Re: VMD on Cray/CNL (Fri May 01 2009 - 01:20:53 CDT)
- Re: VMD 1.8.7 beta 1 posted for download... (Wed Apr 29 2009 - 22:38:21 CDT)
- Re: Size of a protein (Wed Apr 29 2009 - 16:15:05 CDT)
- VMD 1.8.7 beta 1 posted for download... (Wed Apr 29 2009 - 15:06:27 CDT)
- Re: Installation issue (Tue Apr 28 2009 - 09:29:20 CDT)
- Re: RMSD of a protein shell, from the NAMD traj (Sun Apr 26 2009 - 23:59:51 CDT)
- Re: iTrajComp plugin. (Sun Apr 26 2009 - 23:09:29 CDT)
- Re: Using clustering tool (Sun Apr 26 2009 - 23:10:24 CDT)
- Re: Error processing bonds (Fri Apr 24 2009 - 08:03:21 CDT)
- Re: Select atoms using coordinates (Wed Apr 22 2009 - 14:03:32 CDT)
- Re: animate read and write (Wed Apr 22 2009 - 15:42:24 CDT)
- Re: Solvent Accessible Surface Area (Wed Apr 22 2009 - 14:14:01 CDT)
- Re: setbonds (Tue Apr 21 2009 - 23:44:35 CDT)
- Re: Spaceball and OSX (Tue Apr 21 2009 - 13:49:36 CDT)
- Re: Spaceball and OSX (Tue Apr 21 2009 - 12:34:34 CDT)
- Re: Secondary Structure Depiction (Tue Apr 21 2009 - 10:51:48 CDT)
- Re: Possible bug in vmd 1.8.7 alpha? (Sat Apr 18 2009 - 17:02:20 CDT)
- Re: VRPN & PHANToM Omni (Wed Apr 15 2009 - 13:59:42 CDT)
- Re: Multiseq error (Wed Apr 15 2009 - 13:57:57 CDT)
- Re: within, used with pbcwrap (Sat Apr 11 2009 - 09:36:08 CDT)
- Re: Re: Rendering electrostatic surface potentials using Tachyon (Fri Apr 10 2009 - 10:22:45 CDT)
- Re: within, used with pbcwrap (Fri Apr 10 2009 - 09:14:00 CDT)
- Re: Any Mac (Intel) users still running 10.4.x??? (Mon Apr 06 2009 - 11:34:31 CDT)
- Any Mac (Intel) users still running 10.4.x??? (Sun Apr 05 2009 - 10:13:08 CDT)
- Re: OS X intel binary problem (Sun Apr 05 2009 - 09:48:59 CDT)
- Re: questions about the electron density map (Fri Apr 03 2009 - 08:00:39 CDT)
- Re: Synchronization of statements in tcl script (Wed Apr 01 2009 - 00:31:01 CDT)
- Re: vmd cvs compilation with CUDA fails (Tue Mar 31 2009 - 14:26:31 CDT)
- Re: cvs plugins do not compile because of errors in the sgsmooth.C (Tue Mar 31 2009 - 13:34:05 CDT)
- Re: openGL library (Tue Mar 31 2009 - 12:21:00 CDT)
- Re: openGL library (Tue Mar 31 2009 - 11:38:28 CDT)
- Re: Synchronization of statements in tcl script (Sat Mar 28 2009 - 14:41:52 CDT)
- Re: openGL library (Fri Mar 27 2009 - 07:53:34 CDT)
- Re: openGL library (Thu Mar 26 2009 - 21:38:22 CDT)
- Re: how to block psfgen warning messages (Wed Mar 25 2009 - 23:34:08 CDT)
- Re: External renderer not rendering colors from volumetric data (Wed Mar 25 2009 - 09:38:18 CDT)
- Re: near clip (Fri Mar 20 2009 - 14:53:20 CDT)
- Re: near clip (Fri Mar 20 2009 - 11:52:39 CDT)
- VMD 1.8.7 alpha 62 posted for all mainstream platforms... (Fri Mar 20 2009 - 03:30:48 CDT)
- Re: building VMD on LINUX (Tue Mar 17 2009 - 10:03:16 CDT)
- Re: Posting messages to VMD-L truncates the empty spaces in lines (Mon Mar 16 2009 - 20:41:58 CDT)
- Re: Re: superimpose two proteins (Mon Mar 16 2009 - 19:15:00 CDT)
- Re: Posting messages to VMD-L truncates the empty spaces in lines (Mon Mar 16 2009 - 17:49:34 CDT)
- Re: Problem with the script mono2poly.tcl (Sun Mar 15 2009 - 14:22:19 CDT)
- Re: rlwrap bug in Ubuntu (Sun Mar 15 2009 - 14:20:26 CDT)
- Re: rlwrap bug in Ubuntu (Sun Mar 15 2009 - 09:32:06 CDT)
- Re: Problem with the script mono2poly.tcl (Fri Mar 13 2009 - 12:36:37 CDT)
- Re: regarding draw_arrow.tcl (Fri Mar 13 2009 - 10:14:21 CDT)
- Re: Display issue on VMD for Linux (Thu Mar 12 2009 - 17:02:21 CDT)
- Re: color update for xyz trajectory (Thu Mar 12 2009 - 14:57:03 CDT)
- Re: question of iso-surface in VMD graphical representations (Thu Mar 12 2009 - 13:17:23 CDT)
- Re: charmm binary ele. pot. (Wed Mar 11 2009 - 14:45:06 CDT)
- Re: charmm binary ele. pot. (Wed Mar 11 2009 - 13:55:37 CDT)
- Re: obj export (Wed Mar 11 2009 - 11:15:23 CDT)
- Re: regarding draw_arrow.tcl (Wed Mar 11 2009 - 10:36:05 CDT)
- Re: obj export (Wed Mar 11 2009 - 10:15:18 CDT)
- Re: vmd crashes (Tue Mar 10 2009 - 21:58:40 CDT)
- Re: obj export (Tue Mar 10 2009 - 21:56:21 CDT)
- Re: obj export (Tue Mar 10 2009 - 12:01:10 CDT)
- Re: charmm binary ele. pot. (Mon Mar 09 2009 - 09:45:56 CDT)
- Re: the scripting interface (Mon Mar 09 2009 - 09:43:16 CDT)
- Re: vmd crashes (Mon Mar 09 2009 - 09:36:56 CDT)
- Re: problem while integrating bigdcd into a namespace (Thu Mar 05 2009 - 22:36:23 CST)
- Re: Hydrophobicity Scale (Thu Mar 05 2009 - 19:17:49 CST)
- Re: Problem in IMD with Compiled VMD (Wed Mar 04 2009 - 08:34:37 CST)
- Re: images for publication (Wed Mar 04 2009 - 00:11:11 CST)
- Re: images for publication (Tue Mar 03 2009 - 23:49:42 CST)
- Re: volmap masks (Tue Mar 03 2009 - 22:19:47 CST)
- Re: How to convert DCD file into Amber trajectory file in vmd (Tue Mar 03 2009 - 18:35:31 CST)
- Re: (Tue Mar 03 2009 - 15:42:19 CST)
- Re: (Tue Mar 03 2009 - 14:58:22 CST)
- Re: Outline rendering style with Tachyon (Tue Mar 03 2009 - 14:48:32 CST)
- Re: images for publication (Tue Mar 03 2009 - 14:51:18 CST)
- Re: displaying residues within 5 A of ligand in vmd (Tue Mar 03 2009 - 10:25:12 CST)
- Re: wrong bonds during loading pdb file(protein plus lipids) (Mon Mar 02 2009 - 11:15:27 CST)
- Re: (Fri Feb 27 2009 - 18:03:40 CST)
- Re: vmd error related to opengl (Fri Feb 27 2009 - 18:15:37 CST)
- Re: wrong bonds during loading pdb file(protein plus lipids) (Fri Feb 27 2009 - 16:23:19 CST)
- Re: draw command with different material (Thu Feb 26 2009 - 23:46:09 CST)
- Re: Does command "animate delete all" free memory? (Thu Feb 26 2009 - 16:48:58 CST)
- Re: Does command "animate delete all" free memory? (Thu Feb 26 2009 - 15:16:44 CST)
- Re: Displaying local water molecules throughout trajectory (Thu Feb 26 2009 - 14:53:56 CST)
- Re: Weighted RMS fit bug (Thu Feb 26 2009 - 14:25:06 CST)
- Re: to get angle from matrix of rotation around an axis (Wed Feb 25 2009 - 15:37:47 CST)
- Re: Test (Tue Feb 24 2009 - 08:59:26 CST)
- Re: vmd intel compiler prebuild for 64 bit (Tue Feb 24 2009 - 00:54:55 CST)
- Re: Membrane builder ?'s (Tue Feb 24 2009 - 00:06:40 CST)
- Re: Is there a way to add custormized representation method to VMD (Mon Feb 23 2009 - 15:04:06 CST)
- Re: transparent background (Mon Feb 23 2009 - 15:01:32 CST)
- Re: multiple colors for a single atom (Mon Feb 23 2009 - 09:06:43 CST)
- Re: VMD exits immediately after starting on Windows xp (Sun Feb 22 2009 - 17:44:19 CST)
- Re: transparent background (Fri Feb 20 2009 - 18:14:32 CST)
- Re: creating videos where the representation changes throughout (Thu Feb 19 2009 - 23:45:17 CST)
- Re: Unrecognized Chains in VMD for tetrameric protein (Thu Feb 19 2009 - 18:57:54 CST)
- Re: error messages "*** glibc detected *** free(): invalid pointer" (Wed Feb 18 2009 - 17:43:14 CST)
- Re: error messages "*** glibc detected *** free(): invalid pointer" (Wed Feb 18 2009 - 09:44:02 CST)
- Re: making .psf file based on .gro or .pdb (Tue Feb 17 2009 - 19:04:22 CST)
- Re: vmd with cuda1.0 (Mon Feb 16 2009 - 22:23:18 CST)
- Re: vmd with cuda1.0 (Mon Feb 16 2009 - 21:56:04 CST)
- Re: error messages "*** glibc detected *** free(): invalid pointer" (Mon Feb 16 2009 - 13:14:31 CST)
- Re: error messages "*** glibc detected *** free(): invalid pointer" (Mon Feb 16 2009 - 11:43:44 CST)
- Re: error messages "*** glibc detected *** free(): invalid pointer" (Mon Feb 16 2009 - 11:54:45 CST)
- Re: Cannot read MSMS facet file (Mon Feb 16 2009 - 00:27:26 CST)
- Re: about measuring volume of the binding site (Sun Feb 15 2009 - 12:59:15 CST)
- Re: The display windows is out of my screen (Sun Feb 15 2009 - 12:57:36 CST)
- Re: installation (Sun Feb 15 2009 - 12:54:29 CST)
- No 'xterm' needed for next VMD... Was Re: installation (Sat Feb 14 2009 - 19:37:26 CST)
- Re: installation (Sat Feb 14 2009 - 19:34:29 CST)
- Re: installation (Sat Feb 14 2009 - 14:32:53 CST)
- Re: Problem when labeling atoms on machine with intel X4500HD integreted graphic card (Thu Feb 12 2009 - 15:46:21 CST)
- Re: installation (Thu Feb 12 2009 - 13:40:02 CST)
- Re: Load multiple files (Thu Feb 12 2009 - 08:36:11 CST)
- Re: Flow Fields (Tue Feb 10 2009 - 16:28:08 CST)
- Re: problem with "measure fit " (Mon Feb 09 2009 - 16:41:32 CST)
- Re: Equivalent Mouse Capabilities to Tracker CAVELib (Mon Feb 09 2009 - 15:24:34 CST)
- Re: concatenate protein and 2 ligand files (Mon Feb 09 2009 - 15:17:44 CST)
- Re: Atomselect in NAMD GUI (Mon Feb 09 2009 - 00:06:46 CST)
- Re: VMD and IED on Windows XP (Fri Feb 06 2009 - 12:36:04 CST)
- Re: Render alpha-carbon trace as cartoon (Fri Feb 06 2009 - 12:23:33 CST)
- Re: "Sorry, this version VMD was compiled with Python support disabled" (Wed Feb 04 2009 - 16:31:09 CST)
- Re: rmsd matrix (Tue Feb 03 2009 - 10:08:00 CST)
- Re: add a new representation style to VMD (Tue Feb 03 2009 - 09:02:27 CST)
- Re: Link between the electrostatic potential on the surface and the grid.dx generated by APBS (Mon Feb 02 2009 - 10:41:09 CST)
- Re: turn off the 'are you sure you want to quit' sound (Fri Jan 30 2009 - 16:01:04 CST)
- Re: How to install the inorganicbuilder on Windows vista (Fri Jan 30 2009 - 08:28:04 CST)
- Re: how to set color parameters differently for different molecules (Thu Jan 29 2009 - 15:41:18 CST)
- Re: Unable to run VMD in graphical mode/ ubuntu 8.10 / Open GL problem (Wed Jan 28 2009 - 09:25:52 CST)
- Re: [patch] potential CUDA acceleration - load-balancing on different CUDA devices (Wed Jan 28 2009 - 08:21:58 CST)
- Re: trans routine (Tue Jan 27 2009 - 22:29:29 CST)
- Re: VMD window transparent in Opensuse 11.1 ATI system (Tue Jan 27 2009 - 11:56:00 CST)
- Re: get a PDB file from DCD file (Tue Jan 27 2009 - 08:44:32 CST)
- Re: (Resend) Re: Breaking Bonds in VMD (Mon Jan 26 2009 - 15:55:29 CST)
- Note to VMD-L about posting attachments etc... (Mon Jan 26 2009 - 15:58:53 CST)
- Re: accessing bonds angles dihedrals etc lists after PSF file is read into VMD (Mon Jan 26 2009 - 15:42:17 CST)
- Re: accessing bonds angles dihedrals etc lists after PSF file is read into VMD (Thu Jan 22 2009 - 11:33:21 CST)
- Re: Breaking Bonds in VMD (Tue Jan 20 2009 - 17:26:01 CST)
- Re: VMD window transparent in Opensuse 11.1 ATI system (Tue Jan 20 2009 - 15:15:14 CST)
- Re: VMD window transparent in Opensuse 11.1 ATI system (Tue Jan 20 2009 - 10:36:12 CST)
- Re: Breaking Bonds in VMD (Tue Jan 20 2009 - 10:47:17 CST)
- Re: VMD plugin for Desmond (Tue Jan 20 2009 - 09:34:49 CST)
- Re: Problems with tcl/tk 8.5 (Tue Jan 20 2009 - 08:51:08 CST)
- Re: VMD plugin for Desmond (Tue Jan 20 2009 - 08:42:20 CST)
- Re: VMD Installation problem on Ubuntu 8.10 (Tue Jan 20 2009 - 08:46:05 CST)
- Re: VMD window transparent in Opensuse 11.1 ATI system (Tue Jan 20 2009 - 08:44:57 CST)
- Test builds of VMD 1.8.7 using Tcl/Tk 8.5.x... (Fri Jan 16 2009 - 15:34:21 CST)
- Re: ANGLES and DIHEDRALS ... location in VMD code? (Fri Jan 16 2009 - 09:31:01 CST)
- Re: Data fields in vmd (Thu Jan 15 2009 - 11:38:22 CST)
- Re: Data fields in vmd (Thu Jan 15 2009 - 10:34:56 CST)
- Re: loosing color when rendering molecular surface in VMD (Wed Jan 14 2009 - 20:50:03 CST)
- Re: VMD Animation example doesn't work... (Tue Jan 13 2009 - 16:35:01 CST)
- Re: VMD, VRPN, Phantom Desktop (Tue Jan 13 2009 - 16:36:20 CST)
- Re: which model in pdb vill VMD present? (Tue Jan 13 2009 - 14:03:58 CST)
- Re: a problem on Red Hat Enterprise Linux 5 (Mon Jan 05 2009 - 16:13:40 CST)
- Re: measure the distance between center of molecules (Tue Dec 23 2008 - 11:12:38 CST)
- Re: How to get all the angle combinations? (Mon Dec 22 2008 - 10:37:35 CST)
- Re: haptics device "novint falcon" (Mon Dec 15 2008 - 09:26:40 CST)
- Re: vmd on fedora (Tue Dec 09 2008 - 10:34:33 CST)
- Re: vmd on fedora (Mon Dec 08 2008 - 20:34:48 CST)
- Re: How to get number of electrons of an atom in VMD? (Mon Dec 08 2008 - 15:35:39 CST)
- Re: memory leak found (Tue Dec 02 2008 - 09:14:22 CST)
- Re: Other color scales than the predefined ones? (Thu Nov 27 2008 - 09:36:40 CST)
- Re: Desmond trajectory conversion to dcd format (Wed Nov 26 2008 - 16:52:42 CST)
- Re: bug in comments interpretation of vmd (Wed Nov 26 2008 - 11:13:49 CST)
- Re: 3D Graphics (Wed Nov 26 2008 - 11:16:18 CST)
- Re: unloading volumetric data (Mon Nov 24 2008 - 10:32:14 CST)
- Re: General question about the memory usage of VMD (Mon Nov 24 2008 - 11:00:33 CST)
- Re: [patch] Autodetection of formats supported by openbabel (Mon Nov 24 2008 - 10:22:47 CST)
- Re: IED analysis (Mon Nov 24 2008 - 10:34:42 CST)
- Re: 3D Graphics (Mon Nov 24 2008 - 10:40:21 CST)
- Re: use configure.options (Mon Nov 17 2008 - 21:06:12 CST)
- Re: use configure.options (Mon Nov 17 2008 - 20:28:36 CST)
- Re: wavefront and VMD (Fri Nov 14 2008 - 15:46:51 CST)
- Re: How to set the default properties of drawing methods? (Thu Nov 13 2008 - 08:45:40 CST)
- Re: VMD crashes on displaying NewRibbons or New Cartoon (Thu Nov 13 2008 - 08:26:20 CST)
- Re: load MSMS files into vmd (Wed Nov 12 2008 - 13:51:23 CST)
- Re: load MSMS files into vmd (Wed Nov 12 2008 - 09:57:39 CST)
- Re: VMD crashes on displaying NewRibbons or New Cartoon (Wed Nov 12 2008 - 09:35:13 CST)
- Re: OpenGL Display (Tue Nov 11 2008 - 08:05:17 CST)
- Re: Per-frame 'graphics'? (Sat Nov 01 2008 - 10:12:56 CDT)
- Re: problems with manipulating control switches on VMS main menu (Thu Oct 30 2008 - 02:13:11 CDT)
- Re: isosurface question (Wed Oct 29 2008 - 04:47:48 CDT)
- Re: Warning: no convergence in alignment (Mon Oct 27 2008 - 16:35:37 CDT)
- Out of town until November 1 (Thu Oct 16 2008 - 15:53:42 CDT)
- Re: Error in "measure fit" (Thu Oct 16 2008 - 15:43:17 CDT)
- Re: velocity calculations (Wed Oct 15 2008 - 15:58:49 CDT)
- Re: velocity calculations (Wed Oct 15 2008 - 12:39:12 CDT)
- Re: velocity calculations (Wed Oct 15 2008 - 11:11:02 CDT)
- Re: intersurf in vmd (Tue Oct 14 2008 - 16:44:01 CDT)
- Re: why atomselection "protein" can not choose all the protein atoms with different alternate locations? (Tue Oct 14 2008 - 11:43:43 CDT)
- Re: How to visualize only parts of a molecular surface (Wed Oct 08 2008 - 13:51:19 CDT)
- Re: periodic box image in tcl script (Tue Oct 07 2008 - 13:22:02 CDT)
- Re: Fullscreen mode in VMD (Tue Oct 07 2008 - 12:53:07 CDT)
- Re: Pairwise RMSD (Tue Oct 07 2008 - 13:20:12 CDT)
- Re: Problems after installation (ubuntu 8.04) (Tue Oct 07 2008 - 12:05:17 CDT)
- Re: Problems after installation (ubuntu 8.04) (Tue Oct 07 2008 - 11:46:41 CDT)
- Re: Vmd on MACOSX awkward msg at startup and error when running Ubq simulation (Mon Oct 06 2008 - 15:57:08 CDT)
- Re: VMD 1.8.6 for UBUNTU 8.04LTS (Fri Oct 03 2008 - 14:15:18 CDT)
- Re: TAB key in vmd terminal (Fri Oct 03 2008 - 11:16:26 CDT)
- Re: Problems after installation (ubuntu 8.04) (Fri Oct 03 2008 - 09:49:22 CDT)
- Re: suggested graphic card for Mac Pro (Thu Oct 02 2008 - 12:22:39 CDT)
- Re: volumetric maps (Thu Oct 02 2008 - 12:05:19 CDT)
- Re: Re: Does VMD support cfg file format? (Wed Oct 01 2008 - 12:57:19 CDT)
- Re: Does VMD support cfg file format? (Wed Oct 01 2008 - 11:03:05 CDT)
- Re: electrostatic potential (Mon Sep 29 2008 - 16:57:39 CDT)
- Re: question about sscache (Mon Sep 29 2008 - 10:03:46 CDT)
- Re: Help, my molecule is being destroyed (Wed Sep 24 2008 - 15:46:14 CDT)
- Re: electrostatic potential (Wed Sep 24 2008 - 10:50:29 CDT)
- Re: solvate a molecule (Mon Sep 22 2008 - 23:59:54 CDT)
- Re: trouble with running vmd after installation , machine gets hung (Sun Sep 21 2008 - 02:36:43 CDT)
- Re: solvate a molecule (Sat Sep 20 2008 - 02:12:59 CDT)
- Re: Restarting a simulation $ Langevin (Sat Sep 20 2008 - 02:20:34 CDT)
- Re: Projection of a vector on to another. (Sat Sep 20 2008 - 02:11:41 CDT)
- Re: rotation around phi/psi (Sat Sep 20 2008 - 02:05:49 CDT)
- Re: electrostatic potential (Sat Sep 20 2008 - 02:19:15 CDT)
- Re: difficulty in installing VMD on linux. (Fri Sep 19 2008 - 15:11:32 CDT)
- Re: counting gas molecules inside the nanotube (Thu Sep 18 2008 - 12:29:34 CDT)
- Re: counting gas molecules inside the nanotube (Thu Sep 18 2008 - 11:18:43 CDT)
- Re: Trouble installing VMD on LINUX machine (Thu Sep 18 2008 - 11:06:45 CDT)
- Re: regarding rotating dihedral (Wed Sep 17 2008 - 21:58:14 CDT)
- Re: Interface Propensity (Wed Sep 17 2008 - 21:53:13 CDT)
- Re: apbs electrostatics (Wed Sep 17 2008 - 21:42:28 CDT)
- Re: solvation (Wed Sep 17 2008 - 21:46:39 CDT)
- Re: simulation image question (Wed Sep 17 2008 - 12:57:37 CDT)
- Re: problem downloading VMD 1.8.6 source code (Wed Sep 17 2008 - 10:40:41 CDT)
- Re: Tachyon render and Tcl scripting (Tue Sep 16 2008 - 14:00:06 CDT)
- Re: parallel VMD (Tue Sep 16 2008 - 13:35:03 CDT)
- Re: electrostatic potential (Tue Sep 16 2008 - 11:01:18 CDT)
- Re: Installing VMD on Fedora (Tue Sep 16 2008 - 10:58:40 CDT)
- Re: extract centers et radii of beads model (Mon Sep 15 2008 - 16:11:20 CDT)
- Fwd: ACS awards (Mon Sep 15 2008 - 12:53:34 CDT)
- Re: problems with VMD under linux/64-bit machine (Fri Sep 12 2008 - 16:03:48 CDT)
- Re: Rendering problem (Fri Sep 12 2008 - 11:27:01 CDT)
- Re: Volume slice-I: slice color (Thu Sep 11 2008 - 11:06:03 CDT)
- Re: Volume slice: slice color (Wed Sep 10 2008 - 14:07:04 CDT)
- Re: Extensions menu is blank (Tue Sep 09 2008 - 10:52:00 CDT)
- Re: How to generate more segments? (Tue Sep 09 2008 - 01:46:41 CDT)
- Re: solvating a water molecule (Tue Sep 09 2008 - 01:48:46 CDT)
- Re: solvating a water molecule (Mon Sep 08 2008 - 11:41:45 CDT)
- Re: feedback on pc-over-ip technology? (Mon Sep 08 2008 - 11:07:09 CDT)
- Re: Concerning protein rotation (Mon Sep 08 2008 - 11:25:47 CDT)
- Re: Superimposition: atomselect for reverse topology (Mon Sep 08 2008 - 11:16:37 CDT)
- Re: Protein coordinate rotation (Fri Sep 05 2008 - 13:07:55 CDT)
- Re: Re: CONECT Records in .pdb file - bonds not getting plotted (Wed Sep 03 2008 - 14:01:23 CDT)
- Re: solvating a water molecule (Tue Sep 02 2008 - 16:16:49 CDT)
- Re: Is position dependent color possible? (Tue Sep 02 2008 - 12:28:06 CDT)
- Re: Py_atomsel.C: invalid conversion (Fri Aug 29 2008 - 13:05:06 CDT)
- Re: HOLE PROGRAM (Fri Aug 29 2008 - 02:08:14 CDT)
- Re: catDCD (Fri Aug 29 2008 - 01:45:45 CDT)
- Re: catDCD (Wed Aug 27 2008 - 11:58:58 CDT)
- Re: segfault using VMD 1.8.6 32-bit Linux and chromium 1.9 (Mon Aug 25 2008 - 22:45:15 CDT)
- Re: Python callbacks in VMD (Wed Aug 20 2008 - 22:59:53 CDT)
- Re: Inorganic Builder Plugin (Wed Aug 20 2008 - 23:01:45 CDT)
- Re: rmsd (Tue Aug 19 2008 - 01:02:57 CDT)
- Re: RMSD SCRIPT (Tue Aug 19 2008 - 01:01:07 CDT)
- Re: axes (Tue Aug 19 2008 - 00:54:31 CDT)
- Re: how to call dssp in a script (Mon Aug 18 2008 - 11:17:44 CDT)
- Re: Tetrahedral representation (Wed Aug 13 2008 - 18:14:03 CDT)
- Re: renumbering residues (Wed Aug 13 2008 - 18:00:59 CDT)
- Re: Tetrahedral representation (Wed Aug 13 2008 - 13:07:04 CDT)
- Re: catDCD- convert DCD format (Wed Aug 13 2008 - 10:58:21 CDT)
- Re: Depth Cueing and dispdev none (Wed Aug 13 2008 - 09:56:44 CDT)
- Re: Depth Cueing and dispdev none (Mon Aug 11 2008 - 14:13:55 CDT)
- Re: rdf for big systems (Mon Aug 11 2008 - 11:45:07 CDT)
- Re: request ability to append in CatDCD (and NAMD) (Fri Aug 08 2008 - 14:45:52 CDT)
- Re: VMD files to SDF (Thu Aug 07 2008 - 12:52:48 CDT)
- Re: Problems with Newcartoon representation (Wed Aug 06 2008 - 13:38:00 CDT)
- Re: Problems with Newcartoon representation (Wed Aug 06 2008 - 11:33:28 CDT)
- Re: rdf for big systems (Wed Aug 06 2008 - 11:24:27 CDT)
- Re: How to embed 3-D image into powerpoint (Tue Aug 05 2008 - 14:17:47 CDT)
- Re: How to reduce memory usage of a script? (Tue Aug 05 2008 - 00:36:59 CDT)
- Re: How to reduce memory usage of a script? (Mon Aug 04 2008 - 21:44:48 CDT)
- Re: suggested video card for linux (Mon Aug 04 2008 - 11:24:47 CDT)
- Re: SURF and broken surface (Fri Aug 01 2008 - 23:28:04 CDT)
- Re: VMD crasch (Thu Jul 31 2008 - 17:00:22 CDT)
- Re: rdf for big systems (Thu Jul 31 2008 - 13:00:35 CDT)
- Re: How to disable automatic view rotations? (Wed Jul 30 2008 - 15:50:09 CDT)
- Re: How to disable automatic view rotations? (Wed Jul 30 2008 - 15:47:05 CDT)
- Re: How to disable automatic view rotations? (Wed Jul 30 2008 - 14:34:15 CDT)
- Re: Selecting the sides of a benzene ring (Wed Jul 30 2008 - 10:31:50 CDT)
- Re: 3DConnexion SpaceNavigator in 1.8.7alpha30 on OS X (Wed Jul 30 2008 - 10:38:41 CDT)
- Re: 3DConnexion SpaceNavigator in 1.8.7alpha30 on OS X (Wed Jul 30 2008 - 10:25:53 CDT)
- Re: Re: periodic boundary conditions (yes, i read the tutorials) (Tue Jul 29 2008 - 13:22:57 CDT)
- Re: Python for OS X (Tue Jul 29 2008 - 14:09:57 CDT)
- Re: Query (Tue Jul 29 2008 - 13:13:24 CDT)
- Slow mail deliver for next day or so... (Fri Jul 25 2008 - 15:15:09 CDT)
- Re: Selecting the sides of a benzene ring (Wed Jul 23 2008 - 09:15:18 CDT)
- Re: Creating a VMD movie from a Tcl script (Tue Jul 22 2008 - 16:16:15 CDT)
- Re: Creating a VMD movie from a Tcl script (Tue Jul 22 2008 - 13:51:41 CDT)
- Re: Problem writing trajectory to "crd" (Amber) format? (Tue Jul 22 2008 - 14:01:32 CDT)
- Re: Problem to find the number of frames of a trajectory (Tue Jul 22 2008 - 10:15:00 CDT)
- Re: Problem to find the number of frames of a trajectory (Tue Jul 22 2008 - 00:50:30 CDT)
- Re: Problem to find the number of frames of a trajectory (Mon Jul 21 2008 - 23:50:56 CDT)
- Re: Selecting atoms that have real SASA greater than 0, Not using "Surface" (Mon Jul 21 2008 - 10:22:51 CDT)
- Re: Creating a VMD movie from a Tcl script (Mon Jul 21 2008 - 12:46:17 CDT)
- Re: Creating a VMD movie from a Tcl script (Mon Jul 21 2008 - 11:44:58 CDT)
- Re: Creating a VMD movie from a Tcl script (Mon Jul 21 2008 - 10:31:28 CDT)
- Re: vmd MacOSX using dispdev (Thu Jul 17 2008 - 22:12:18 CDT)
- Re: Creating a VMD movie from a Tcl script (Thu Jul 17 2008 - 21:56:35 CDT)
- Re: Compiling from source on Mac OS X 10.5 (Thu Jul 17 2008 - 17:04:38 CDT)
- Re: Error message in VMD console when I try to switch to Python mode. (Thu Jul 17 2008 - 16:50:42 CDT)
- Re: Creating a VMD movie from a Tcl script (Thu Jul 17 2008 - 17:02:05 CDT)
- Re: tachyon rendering on black background figure (Thu Jul 17 2008 - 16:31:06 CDT)
- Re: Tetrahedral representation (Thu Jul 17 2008 - 16:14:35 CDT)
- Re: VMD Does not start on my MacBook (Thu Jul 17 2008 - 15:39:55 CDT)
- Re: Fwd: PDB Bonds versus "distance" bonds (Thu Jul 17 2008 - 09:24:55 CDT)
- Re: Error message in VMD console when I try to switch to Python mode. (Thu Jul 17 2008 - 09:21:29 CDT)
- Re: Error message in VMD console when I try to switch to Python mode. (Wed Jul 16 2008 - 14:19:51 CDT)
- Re: Error message in VMD console when I try to switch to Python mode. (Wed Jul 16 2008 - 13:28:55 CDT)
- Re: ResdueType and hydrophobicity scale (Wed Jul 16 2008 - 02:47:41 CDT)
- Re: purple bacteria and psfgen (Wed Jul 16 2008 - 02:50:49 CDT)
- Re: ResdueType and hydrophobicity scale (Wed Jul 16 2008 - 01:59:34 CDT)
- Re: tachyon rendering on black background figure (Wed Jul 16 2008 - 01:46:53 CDT)
- Re: problem with correct visualization of residues (Tue Jul 15 2008 - 13:04:18 CDT)
- Re: Fwd: PDB Bonds versus "distance" bonds (Tue Jul 15 2008 - 13:00:42 CDT)
- Re: Visualizing History file from DL_POLY (Tue Jul 15 2008 - 10:39:33 CDT)
- Re: Loading Problem (Fri Jul 11 2008 - 10:54:39 CDT)
- Re: measure forces applied in VMD (Fri Jul 11 2008 - 10:48:11 CDT)
- I'm back.. (Tue Jul 08 2008 - 16:24:12 CDT)
- SpaceNavigator test builds (last note before I go offline!) (Fri Jun 20 2008 - 02:04:50 CDT)
- Re: IMD per TCL (Fri Jun 20 2008 - 00:15:33 CDT)
- Re: save NAMD plot as a picture (Thu Jun 19 2008 - 23:51:06 CDT)
- Re: vmd_init (Fri Jun 20 2008 - 00:11:41 CDT)
- Re: Print and save DLPOLY HISTORY plots (Thu Jun 19 2008 - 23:48:06 CDT)
- Away from VMD-L/email until July 8th... (Thu Jun 19 2008 - 19:50:06 CDT)
- Re: Discrepancy between colours when coloured by timestep and Tachyon rendered (Thu Jun 19 2008 - 13:54:40 CDT)
- Re: Discrepancy between colours when coloured by timestep and Tachyon rendered (Thu Jun 19 2008 - 13:25:49 CDT)
- Re: Discrepancy between colours when coloured by timestep and Tachyon rendered (Thu Jun 19 2008 - 13:02:04 CDT)
- Re: Print and save DLPOLY HISTORY plots (Thu Jun 19 2008 - 13:05:02 CDT)
- Re: Discrepancy between colours when coloured by timestep and Tachyon rendered (Thu Jun 19 2008 - 13:05:52 CDT)
- Re: About occupancy volume maps (Thu Jun 19 2008 - 00:38:25 CDT)
- Re: Image rendering using pov-ray (Fri Jun 13 2008 - 14:48:24 CDT)
- Re: Image rendering using pov-ray (Thu Jun 12 2008 - 22:04:47 CDT)
- Re: psf generation of circular proteins (Thu Jun 12 2008 - 00:22:46 CDT)
- Re: psf generation of circular proteins (Wed Jun 11 2008 - 10:18:02 CDT)
- Re: problem loading trajectory in VMD under windows XP (Wed Jun 11 2008 - 01:37:58 CDT)
- Re: SpaceNavigator (Wed Jun 11 2008 - 02:53:39 CDT)
- Re: Total list of Tcl features (Sat Jun 07 2008 - 00:35:26 CDT)
- Re: Long file paths in Mac OS 10.5.3 (Wed Jun 04 2008 - 16:52:10 CDT)
- Re: Long file paths in Mac OS 10.5.3 (Wed Jun 04 2008 - 16:27:03 CDT)
- Re: Batch mode on Mac OS 10.5.3 (Tue Jun 03 2008 - 11:10:18 CDT)
- Postdoc position available... (Sat May 31 2008 - 01:06:59 CDT)
- Re: errors with using surf and MSMS representations (Tue May 27 2008 - 16:13:41 CDT)
- Re: errors with using surf and MSMS representations (Tue May 27 2008 - 15:12:35 CDT)
- Re: Several molecules (Tue May 20 2008 - 10:21:03 CDT)
- Re: Slow tcl/tk script for trajectory analysis (Fri May 16 2008 - 14:45:49 CDT)
- Re: NewCartoons / STRIDE problem (Fri May 16 2008 - 14:55:56 CDT)
- Re: Individual atoms trajectory (Fri May 16 2008 - 01:33:59 CDT)
- Re: Individual atoms trajectory (Thu May 15 2008 - 23:42:40 CDT)
- Re: How to calculate the volume of a molecule using vmd? (Thu May 15 2008 - 23:39:45 CDT)
- Re: 'within' command in VMD (Sun May 11 2008 - 13:12:48 CDT)
- Re: 'within' command in VMD (Sun May 11 2008 - 10:54:53 CDT)
- Re: Recompile VMD with larger index types (Sun May 11 2008 - 00:48:35 CDT)
- Re: Recompile VMD with larger index types (Sat May 10 2008 - 10:24:43 CDT)
- Re: running vmd as pbs job (Fri May 09 2008 - 02:29:22 CDT)
- Re: Charge State Confusion (Thu May 08 2008 - 22:55:36 CDT)
- Re: measure sasa gives different results on different platforms (Thu May 08 2008 - 11:39:07 CDT)
- Re: measure sasa gives different results on different platforms (Wed May 07 2008 - 23:08:22 CDT)
- Re: measure sasa gives different results on different platforms (Wed May 07 2008 - 16:59:55 CDT)
- Re: Vmd too slow on Suse10.x (Mon May 05 2008 - 09:42:31 CDT)
- Re: viewing pca output (Fri May 02 2008 - 16:36:51 CDT)
- Re: a common list problem (Fri May 02 2008 - 10:39:04 CDT)
- Re: viewing pca output (Thu May 01 2008 - 22:38:31 CDT)
- Re: Rendering electrostatic surface potentials using Tachyon (Thu May 01 2008 - 21:56:13 CDT)
- Re: Measuring fit exclusively in 1 plane (Thu May 01 2008 - 21:54:14 CDT)
- Re: creating psf from pgn (Tue Apr 29 2008 - 16:09:24 CDT)
- Re: Can not enter text in VMD plugin window (Mon Apr 28 2008 - 13:25:30 CDT)
- Re: Can not enter text in VMD plugin window (Sat Apr 26 2008 - 00:25:15 CDT)
- Re: Can not enter text in VMD plugin window (Fri Apr 25 2008 - 21:53:05 CDT)
- Re: how to render higher resolution figures for publication? (Fri Apr 25 2008 - 16:07:06 CDT)
- Re: problem while running VMD (Thu Apr 24 2008 - 09:20:17 CDT)
- Re: resolution screen in Linux (Thu Apr 24 2008 - 08:46:50 CDT)
- Re: Compiled version for MacOSX with non-standard options (Wed Apr 23 2008 - 23:45:05 CDT)
- Re: Rendering Labels with Tachyon (Wed Apr 23 2008 - 19:36:49 CDT)
- Re: warnings during plugin build (Mon Apr 21 2008 - 19:50:11 CDT)
- Re: warnings during plugin build (Sat Apr 19 2008 - 14:29:46 CDT)
- Re: warnings during plugin build (Sat Apr 19 2008 - 14:46:06 CDT)
- Re: Compiled version for MacOSX with non-standard options (Fri Apr 18 2008 - 12:55:49 CDT)
- Re: PPMTOMPEG Quality (Thu Apr 17 2008 - 16:38:16 CDT)
- Re: Compiled version for MacOSX with non-standard options (Thu Apr 17 2008 - 13:15:46 CDT)
- Re: compilation with python 2.5 and file permissions from the CVS repository (Mon Apr 14 2008 - 10:26:18 CDT)
- Re: compilation with python 2.5 and file permissions from the CVS repository (Sun Apr 13 2008 - 15:29:57 CDT)
- Re: Visualization in 3-D using NVIDIA quaddro (Wed Apr 09 2008 - 10:28:10 CDT)
- Re: psfgen 999 waters resname X column (Mon Apr 07 2008 - 11:54:54 CDT)
- Re: Insall Problem VMD Linux 1.8.6 Part II! (Sun Apr 06 2008 - 23:48:11 CDT)
- Re: Insall Problem VMD Linux 1.8.6 Part II! (Sun Apr 06 2008 - 23:23:31 CDT)
- Re: Install problem VMD Linux 1.8.6 (Sun Apr 06 2008 - 20:15:31 CDT)
- Re: How to read specific DCD frames directly in Fortran? (Sat Apr 05 2008 - 13:43:21 CDT)
- Re: how to render higher resolution figures for publication? (Fri Apr 04 2008 - 17:59:52 CDT)
- Re: how to render higher resolution figures for publication? (Fri Apr 04 2008 - 16:36:05 CDT)
- Re: render (Thu Apr 03 2008 - 00:24:30 CDT)
- Re: Compiling VMD under Windows XP (Thu Apr 03 2008 - 00:13:12 CDT)
- Re: Cannot perform RMSD analysis (Wed Apr 02 2008 - 23:53:41 CDT)
- Re: Re: porcupine plot (Wed Apr 02 2008 - 23:41:12 CDT)
- Re: render (Tue Apr 01 2008 - 14:14:12 CDT)
- Re: Movie Maker skipping (Tue Apr 01 2008 - 12:53:13 CDT)
- Re: Movie Maker skipping (Tue Apr 01 2008 - 13:37:18 CDT)
- Re: Compiling VMD under Windows XP (Mon Mar 31 2008 - 10:29:59 CDT)
- Re: porcupine plot (Mon Mar 31 2008 - 01:22:18 CDT)
- Re: Re-create Figures in VMD Images and Movies Tutorial (Sun Mar 30 2008 - 15:51:16 CDT)
- Re: Tcl 8.5.x in upcoming versions of VMD... (Thu Mar 27 2008 - 18:11:20 CDT)
- Tcl 8.5.x in upcoming versions of VMD... (Thu Mar 27 2008 - 17:19:47 CDT)
- Test VMD with CUDA support for Linux and MacOS X 10.5.2... (Thu Mar 27 2008 - 17:13:15 CDT)
- Re: time correlation function (Thu Mar 27 2008 - 17:08:08 CDT)
- Re: How to see the original Origin (0,0,0, coordinate) of a system (Thu Mar 27 2008 - 16:51:44 CDT)
- Re: Selection "within x of something" is not updated throughout DCD trajectory? (Thu Mar 27 2008 - 14:04:35 CDT)
- Re: Can we get secondary structure from PDB files? (Wed Mar 26 2008 - 21:26:46 CDT)
- Re: Test (Tue Mar 25 2008 - 21:59:05 CDT)
- Re: Loading a PDB file with different atom counts in models (Mon Mar 24 2008 - 23:31:20 CDT)
- Re: GPU test machine (Thu Mar 20 2008 - 19:29:58 CDT)
- Re: atoms with changing colors (Thu Mar 20 2008 - 17:03:47 CDT)
- Re: atomselect protein (Thu Mar 20 2008 - 16:48:27 CDT)
- Re: GPU test machine (Thu Mar 20 2008 - 15:34:52 CDT)
- Re: GPU test machine (Thu Mar 20 2008 - 11:25:09 CDT)
- Re: problem with gopython (Tue Mar 11 2008 - 10:06:47 CDT)
- Re: snapshot not compatible with -dispdev text? (Mon Mar 10 2008 - 17:46:22 CDT)
- Re: Automatically zoom so that the protein fill the display (Mon Mar 10 2008 - 14:17:27 CDT)
- Re: Automatically zoom so that the protein fill the display (Mon Mar 10 2008 - 14:36:02 CDT)
- Re: calculate volume (Sat Mar 08 2008 - 19:03:06 CST)
- Re: calculate volume (Sat Mar 08 2008 - 00:01:06 CST)
- Re: calculate volume (Fri Mar 07 2008 - 22:20:45 CST)
- Re: how to make smooth movies ? (Fri Mar 07 2008 - 10:52:15 CST)
- Re: VMD 3D stereo hardware (Thu Mar 06 2008 - 10:25:46 CST)
- Re: running vmd in parallel (Wed Mar 05 2008 - 12:31:35 CST)
- Re: TCL/VMD problem (Wed Mar 05 2008 - 12:25:42 CST)
- Re: Visualizing trajectory with changing atoms (Tue Mar 04 2008 - 15:26:04 CST)
- Re: VMD languaje information (Tue Mar 04 2008 - 13:53:24 CST)
- [carlos.simmerling@gmail.com: ACS awards] (Mon Mar 03 2008 - 20:11:56 CST)
- Re: missing basic tutorials for VMD scripting? (Mon Mar 03 2008 - 10:57:10 CST)
- Re: Re: unusual bond between the cysteine and arginine residue during the simulation (Fri Feb 29 2008 - 15:06:49 CST)
- Re: specify the bonds between the atoms (Fri Feb 29 2008 - 14:04:44 CST)
- Re: unusual bond between the cysteine and arginine residue during the simulation (Fri Feb 29 2008 - 13:58:08 CST)
- Re: SASA calculation (protein + small molecules) (Fri Feb 29 2008 - 13:11:37 CST)
- Re: no convergence in align (Fri Feb 29 2008 - 12:39:20 CST)
- Re: no convergence in align (Fri Feb 29 2008 - 11:07:38 CST)
- Re: no convergence in align (Fri Feb 29 2008 - 10:05:34 CST)
- Re: How to get rubber-like surface with Tachyon renderer (Mon Feb 25 2008 - 11:33:21 CST)
- Re: vmd snapshots without display (Fri Feb 22 2008 - 11:33:36 CST)
- Re: VASP CHGCAR (Thu Feb 21 2008 - 17:22:36 CST)
- Re: couldn't fork child process: not enough memory (Thu Feb 21 2008 - 15:39:30 CST)
- Re: Unable to see VDW , CPK representations (Thu Feb 21 2008 - 11:34:53 CST)
- Re: Selection in VMD Graphical representation (Wed Feb 20 2008 - 13:32:03 CST)
- Re: change axes name (Tue Feb 19 2008 - 10:59:23 CST)
- Re: VMD limitation for loading large trajectory file (Fri Feb 15 2008 - 17:03:15 CST)
- Re: Unable to see VDW , CPK representations (Fri Feb 15 2008 - 16:42:15 CST)
- Re: Hinge calculation in MD trajectory using Hingefind plug-in (Fri Feb 15 2008 - 15:40:29 CST)
- Re: display of periodic DCD information (Thu Feb 14 2008 - 16:34:22 CST)
- Re: Volume data formats (Thu Feb 14 2008 - 12:10:26 CST)
- Re: FieldLines (Wed Feb 13 2008 - 14:34:04 CST)
- Re: Improved VMD performance on MacOSX 10.5.2 (Tue Feb 12 2008 - 18:26:09 CST)
- Re: installation problem vmd 1.8.6 on fedora 3 (Fri Feb 08 2008 - 11:27:28 CST)
- Re: heuristic bond computation (Thu Feb 07 2008 - 22:37:45 CST)
- Re: animate read command (Tue Feb 05 2008 - 14:16:00 CST)
- Re: help with animate read command (Tue Feb 05 2008 - 13:48:02 CST)
- Re: About Cluster Plug-in (Tue Feb 05 2008 - 09:45:23 CST)
- Re: To create Tetramer (Tue Feb 05 2008 - 09:55:43 CST)
- Re: Percentage Helicity calculation in VMD (Sat Feb 02 2008 - 15:30:18 CST)
- Re: sausage view of NMR ensembles (Thu Jan 31 2008 - 23:31:36 CST)
- Re: 'gopython' Tkinter and Numeric Python error (Wed Jan 30 2008 - 10:29:49 CST)
- Re: Sasa script in python returns "Runtime error" (Wed Jan 30 2008 - 10:26:18 CST)
- Re: re: script hangs when use full dcd file (Fri Jan 25 2008 - 14:32:42 CST)
- Re: problem with timeline plugin (Fri Jan 25 2008 - 00:17:48 CST)
- Re: problems with a script (Fri Jan 25 2008 - 00:15:14 CST)
- Re: preserving atom index or hexadecimal residue numbers after writepdb (Fri Jan 25 2008 - 00:12:56 CST)
- Re: MSVC Projects Corrupt and Missing (Thu Jan 24 2008 - 22:45:18 CST)
- Re: MSVC Projects Corrupt and Missing (Thu Jan 24 2008 - 23:10:27 CST)
- Re: Electron density (Thu Jan 24 2008 - 18:08:52 CST)
- Re: Can VMD visualize forces? (Thu Jan 24 2008 - 18:01:20 CST)
- Re: Increasing MAXATOMBONDS? (Mon Jan 21 2008 - 12:11:51 CST)
- Re: problem with time line plugin in VMD (Sun Jan 20 2008 - 22:55:40 CST)
- Re: Error in changing on screen options of VMD (Sun Jan 20 2008 - 22:54:33 CST)
- Re: VMD drawing (Sun Jan 20 2008 - 20:59:51 CST)
- Re: error in loading psf file generated from lammps data file. (Sun Jan 20 2008 - 20:46:28 CST)
- Re: MSMS plugin for windows (Thu Jan 17 2008 - 12:56:24 CST)
- Re: Could not locate 'dowser' (Program not found message box) (Thu Jan 17 2008 - 10:43:25 CST)
- Re: problem rendering NewCartoon with tachyon (Tue Jan 15 2008 - 12:44:31 CST)
- Re: Video Card for VMD, 2D or 3D (Sat Jan 12 2008 - 00:11:53 CST)
- Re: measure contacts script (Sat Jan 12 2008 - 00:23:09 CST)
- Re: Link atoms (Wed Jan 09 2008 - 22:51:46 CST)
- Re: Increasing MAXATOMBONDS? (Wed Jan 09 2008 - 01:22:13 CST)
- Re: X_ChangeProperty: BadValue (integer parameter out of range for operation) 0x40 (Tue Jan 08 2008 - 14:09:56 CST)
- Re: X_ChangeProperty: BadValue (integer parameter out of range for operation) 0x40 (Tue Jan 08 2008 - 14:10:41 CST)
- Re: VMD intallation (Mon Jan 07 2008 - 15:33:25 CST)
- Re: Cluster analysis (Mon Jan 07 2008 - 11:51:34 CST)
- Re: Cluster analysis (Mon Jan 07 2008 - 01:59:40 CST)
- Re: Phantom Omni Haptic Device (Mon Jan 07 2008 - 01:49:31 CST)
- VMD-L membership pruning, more anti-spam measures.. (Sat Jan 05 2008 - 00:26:40 CST)
- Re: (UNCLASSIFIED) (Fri Jan 04 2008 - 13:29:49 CST)
- Re: vmd error message (Fri Jan 04 2008 - 13:01:37 CST)
- VMD-L post spam blocking, rescued messages from the last 30 days... (Fri Jan 04 2008 - 12:33:38 CST)
- Re: installation on suse linux 10.3 (Fri Jan 04 2008 - 12:39:02 CST)
- Re: Viewing molden grid files (Fri Jan 04 2008 - 13:06:22 CST)
- Re: replication of bilayer (Fri Jan 04 2008 - 12:42:10 CST)
- Re: VMD movie from XYZ coordinate if file has two type of atoms (Fri Jan 04 2008 - 12:38:08 CST)
- Re: VMD on Linux Suse (Fri Jan 04 2008 - 12:35:27 CST)
- Re: vmd in ubuntu on mac mini (Fri Jan 04 2008 - 12:40:13 CST)
- Re: Hydrogens in vmd (Thu Jan 03 2008 - 14:26:16 CST)
- Re: freevr tool transformation (Thu Jan 03 2008 - 01:12:44 CST)
- Re: Increasing MAXATOMBONDS? (Wed Dec 19 2007 - 20:59:02 CST)
- Re: add Mg2+ (Wed Dec 19 2007 - 15:37:16 CST)
- Re: add Mg2+ (Wed Dec 19 2007 - 14:09:30 CST)
- Re: display bonds (Wed Dec 19 2007 - 14:02:49 CST)
- Re: VMD on Linux Suse (Wed Dec 19 2007 - 01:34:42 CST)
- Re: Increasing MAXATOMBONDS? (Tue Dec 18 2007 - 12:56:55 CST)
- Re: how to transform the coordinate of the atom using vmd (Fri Dec 07 2007 - 15:02:21 CST)
- Re: How to display Chain name in Labels (Thu Dec 06 2007 - 23:53:32 CST)
- Re: Making movies in VMD (UNCLASSIFIED) (Thu Dec 06 2007 - 16:11:00 CST)
- Re: Making movies in VMD (Thu Dec 06 2007 - 12:34:37 CST)
- Re: applying forces on a protein in VMD (Wed Dec 05 2007 - 00:58:14 CST)
- Re: SpaceNavigator (Tue Dec 04 2007 - 22:57:22 CST)
- Re: Rainbow color scheme for VolumeSlice / Volume (Tue Dec 04 2007 - 18:03:05 CST)
- Re: FreeVR wand (Tue Dec 04 2007 - 18:00:55 CST)
- Re: SpaceNavigator (Mon Dec 03 2007 - 18:52:09 CST)
- Re: Multiseq (Sun Dec 02 2007 - 22:57:53 CST)
- Re: Render Snapshot from the Tcl console (jpg gif format) (Sun Dec 02 2007 - 21:19:51 CST)
- Re: Render Snapshot from the Tcl console (jpg gif format) (Sun Dec 02 2007 - 19:53:20 CST)
- Re: SpaceNavigator (Fri Nov 30 2007 - 12:32:28 CST)
- Re: SpaceNavigator (Fri Nov 30 2007 - 10:24:02 CST)
- Re: SpaceNavigator (Thu Nov 29 2007 - 12:16:55 CST)
- Re: Water within the minmax of protein (Thu Nov 29 2007 - 10:30:54 CST)
- Re: Hydrophobicity plots in VMD (Tue Nov 27 2007 - 16:27:58 CST)
- Re: Intersurf and interface residues (Tue Nov 27 2007 - 13:53:24 CST)
- Re: Trying to get VMD to run locally while logged into a remote machine (Mon Nov 26 2007 - 19:00:24 CST)
- Re: cave (Mon Nov 26 2007 - 11:44:33 CST)
- Re: Hydrophobicity plots in VMD (Mon Nov 26 2007 - 11:16:08 CST)
- Re: cave (Sun Nov 25 2007 - 12:54:56 CST)
- Re: cave (Thu Nov 22 2007 - 10:21:30 CST)
- Re: problem with loading trajectories in timline plugin (Thu Nov 22 2007 - 00:35:09 CST)
- Re: vmd command delay (Wed Nov 21 2007 - 13:26:48 CST)
- Re: analysing big trajectories (fwd) (Tue Nov 20 2007 - 18:32:23 CST)
- Re: Trying to get VMD to run locally while logged into a remote machine (Tue Nov 20 2007 - 17:24:36 CST)
- Re: analysing big trajectories (fwd) (Tue Nov 20 2007 - 17:30:59 CST)
- Re: analysing big trajectories (Tue Nov 20 2007 - 16:26:34 CST)
- Re: analysing big trajectories (Tue Nov 20 2007 - 14:41:35 CST)
- Re: Potential map animation, help! (Tue Nov 20 2007 - 13:05:25 CST)
- Re: problem with colouring the surface with electroststic potential (Wed Nov 14 2007 - 11:19:27 CST)
- Re: problem with colouring the surface with electroststic potential (Tue Nov 13 2007 - 10:09:17 CST)
- Re: stride binaries for windows XP OS (Tue Nov 13 2007 - 10:18:59 CST)
- Re: molfile reader plugin woes (Thu Nov 08 2007 - 07:24:35 CST)
- VMD/NAMD at SC2007 (Wed Nov 07 2007 - 21:41:57 CST)
- Re: question about ionization (Wed Nov 07 2007 - 20:17:54 CST)
- Out of office until Nov. 16 (Wed Nov 07 2007 - 11:57:55 CST)
- Re: vmd command delay (Mon Nov 05 2007 - 17:31:24 CST)
- Re: Download vmd for 64-bit Intel Itanium (Mon Nov 05 2007 - 16:55:20 CST)
- Re: Alignment (Sun Nov 04 2007 - 13:53:06 CST)
- Re: Alignment (Sat Nov 03 2007 - 23:30:57 CDT)
- Re: cloning a molecule (Fri Nov 02 2007 - 14:22:26 CDT)
- Re: problem with protein RMSD calculation due to incomplete wrapping of both peptide chains (Thu Nov 01 2007 - 17:39:14 CDT)
- Re: vmd ubuntu crash (Thu Nov 01 2007 - 12:32:57 CDT)
- Re: aligning protein based on one helix of protein (Wed Oct 31 2007 - 17:25:50 CDT)
- Re: status of psfgen support for CHARMM psf format (Tue Oct 30 2007 - 22:57:31 CDT)
- Re: CMYK (Tue Oct 30 2007 - 17:49:30 CDT)
- Re: how to display dcd file written with catdcd using an index file (Fri Oct 26 2007 - 15:50:55 CDT)
- Re: installation of APBS plug-in in VMD 1.8.6 (Thu Oct 25 2007 - 21:29:12 CDT)
- Re: FW: VMD & OpenGL GLX Extension (Wed Oct 24 2007 - 17:36:21 CDT)
- Re: Writing in NAMD binary format in VMD from TCl/Tk console? (Wed Oct 24 2007 - 17:24:52 CDT)
- Re: Color by Volume on an Intel 945GM (Mon Oct 22 2007 - 10:34:50 CDT)
- Re: Problem with bigdcd (Fri Oct 19 2007 - 11:01:24 CDT)
- Re: APBS dx colors depend on order of molec files loaded??? (Thu Oct 18 2007 - 15:08:21 CDT)
- Re: RMSD Trajectory Tool (Wed Oct 17 2007 - 21:56:39 CDT)
- Re: Rotate a box with pcb (Wed Oct 17 2007 - 22:24:58 CDT)
- Re: combine.tcl error (Wed Oct 17 2007 - 22:11:59 CDT)
- Re: Is catdcd running on Windows? (Wed Oct 17 2007 - 21:15:39 CDT)
- Re: multiple attempts before vmd starts up (Wed Oct 17 2007 - 20:34:41 CDT)
- Re: Problems Opening Large .dx File (Wed Oct 17 2007 - 17:28:37 CDT)
- Re: residue selection (water molecule within 5 ang. to protein in simulation) (Tue Oct 16 2007 - 10:57:29 CDT)
- Re: Problem vmd1.8.5 & vmd1.8.6 on a mac-pro running ubuntu (Tue Oct 16 2007 - 10:19:21 CDT)
- Re: Error with stride (Tue Oct 16 2007 - 09:27:10 CDT)
- Re: bonds across periodic boundaries (Tue Oct 16 2007 - 09:22:46 CDT)
- Re: Strange behaviour of MSMS (Tue Oct 16 2007 - 09:20:37 CDT)
- Re: Problems Opening Large .dx File (Mon Oct 15 2007 - 15:26:55 CDT)
- Re: Generating parameter file for Cl2- (Mon Oct 15 2007 - 15:22:08 CDT)
- Re: Fixing the View in a Movie (Fri Oct 12 2007 - 16:14:14 CDT)
- Re: VMD access using XWIN32 or X-Deep (Fri Oct 12 2007 - 15:34:12 CDT)
- Re: Cube Files - proportion of the electron density (Tue Oct 09 2007 - 14:38:06 CDT)
- Re: Normal VMD crashed when pdb load but Debug mode works (Mon Oct 08 2007 - 11:48:43 CDT)
- Re: no transparency on newest iMacs (Fri Oct 05 2007 - 01:35:41 CDT)
- Re: time step (Thu Oct 04 2007 - 23:39:34 CDT)
- Re: no transparency on newest iMacs (Wed Oct 03 2007 - 19:12:40 CDT)
- Re: Storing multiple values in the user field (Fri Sep 28 2007 - 17:12:51 CDT)
- Re: Storing multiple values in the user field (Fri Sep 28 2007 - 16:25:34 CDT)
- Re: video memory and volumetric data (Fri Sep 28 2007 - 16:19:41 CDT)
- Re: Re: python Numeric library problem (Fri Sep 28 2007 - 14:35:25 CDT)
- Re: behavior of "mol addfile first/last" with non-integer frame numbers (Fri Sep 28 2007 - 13:37:49 CDT)
- Re: vmd files between linux and windows (Thu Sep 27 2007 - 10:19:30 CDT)
- Re: How can I get .xyzr file or .xyzrn file? (Wed Sep 26 2007 - 16:38:04 CDT)
- Re: Can't execvp vmd_SOLARISX86 (Sun Sep 23 2007 - 21:49:23 CDT)
- Re: residue selection: conflict between resid and residue (Fri Sep 21 2007 - 15:24:04 CDT)
- Re: smooting structure (Wed Sep 19 2007 - 11:57:16 CDT)
- Re: osx startup script (Mon Sep 17 2007 - 15:34:55 CDT)
- Re: changing the tile angle of a peptide embedded in a membrane (Mon Sep 10 2007 - 13:09:39 CDT)
- Re: GLSL rendering mode is NOT available (Mon Sep 10 2007 - 10:32:37 CDT)
- Re: vmdbasename: Undefined variable (Sat Sep 08 2007 - 22:24:02 CDT)
- Re: is it possible to skip frame when using bigdcd (Fri Sep 07 2007 - 12:38:26 CDT)
- Re: the console window is automatically closed without any error messages (Thu Sep 06 2007 - 12:36:44 CDT)
- Re: the console window is automatically closed without any error messages (Thu Sep 06 2007 - 10:52:49 CDT)
- Re: Problem with saving coordinate (Sat Sep 01 2007 - 21:04:16 CDT)
- Re: Problem with saving coordinate (Fri Aug 31 2007 - 02:08:30 CDT)
- Re: VMD analysis using NAMD plot (Wed Aug 29 2007 - 11:03:24 CDT)
- Re: dcd file error (Wed Aug 29 2007 - 00:08:39 CDT)
- Re: atomselection in order (Wed Aug 29 2007 - 00:11:02 CDT)
- Re: Aggregation analysis (Wed Aug 29 2007 - 00:21:48 CDT)
- Re: atomselection in order (Mon Aug 27 2007 - 14:57:12 CDT)
- Re: coordinates with get command (Sat Aug 25 2007 - 23:04:51 CDT)
- Re: FYI: 1.8.6 runs full GLSL on AMD64 (Wed Aug 22 2007 - 22:55:06 CDT)
- Re: Selection within VMD (Wed Aug 22 2007 - 15:04:15 CDT)
- Re: VMD w/ amber parm7, segnames/chains etc... (Wed Aug 22 2007 - 13:54:14 CDT)
- Re: automating graphic representations (Wed Aug 22 2007 - 13:44:19 CDT)
- Re: FYI: 1.8.6 runs full GLSL on AMD64 (Wed Aug 22 2007 - 13:40:37 CDT)
- Re: VMD crashes during the execution of a computational intensive TCL script (Mon Aug 20 2007 - 16:41:17 CDT)
- Re: povray problem: degenerate cylinder revisited (Tue Aug 14 2007 - 15:42:08 CDT)
- Re: Reference for SASA (Tue Aug 14 2007 - 15:38:20 CDT)
- Re: new machine problems. (Tue Aug 14 2007 - 14:49:09 CDT)
- Re: printing timeline window with axes (Tue Aug 14 2007 - 14:50:19 CDT)
- Re: Increasing use of RAM even if I put unset/delete for selections! Due to use of arrays? (Tue Aug 14 2007 - 12:14:38 CDT)
- Re: Installing VMD to work with MSMS (Tue Aug 14 2007 - 12:23:16 CDT)
- Re: Archived Spam in the VMD-L Mailing List (Tue Aug 14 2007 - 10:13:27 CDT)
- Re: Archived Spam in the VMD-L Mailing List (Tue Aug 14 2007 - 10:07:37 CDT)
- Re: chime vs vmd (Mon Aug 13 2007 - 11:49:24 CDT)
- Re: plotting on Mac (Fri Aug 10 2007 - 15:11:43 CDT)
- Re: Color a protein based on a property (Fri Aug 10 2007 - 15:09:49 CDT)
- Re: dcd reading routines (Fri Aug 10 2007 - 13:15:37 CDT)
- Re: how to make user input during runtime of a tcl program using TkConsole? (Fri Aug 10 2007 - 10:25:55 CDT)
- Re: What does Stride need to draw SS? (Thu Aug 09 2007 - 17:36:23 CDT)
- Re: electron density map is shifted? (Thu Aug 09 2007 - 14:57:55 CDT)
- Re: package require Tcl 8.5 => ::tcl::mathfunc:: (Thu Aug 09 2007 - 11:04:00 CDT)
- Re: package require Tcl 8.5 => ::tcl::mathfunc:: (Thu Aug 09 2007 - 11:01:09 CDT)
- Re: Writing MolFile plugin for CIF (Wed Aug 08 2007 - 12:24:57 CDT)
- Re: VMD acts too slow (Tue Aug 07 2007 - 21:03:37 CDT)
- Re: VMD plugins error (Mon Aug 06 2007 - 23:59:51 CDT)
- Re: within and exwithin macro (Tue Aug 07 2007 - 00:06:53 CDT)
- Re: a problem with installation (to generate the Makefile ) (Mon Aug 06 2007 - 23:56:38 CDT)
- Re: How to calculate the C alpha RMSD from NAMD trajectory (Fri Aug 03 2007 - 10:58:13 CDT)
- Re: Tachyon doesn't take into account ColorID (Mon Jul 30 2007 - 14:32:22 CDT)
- VMD-L moderation fully automatic from now on.... (Mon Jul 30 2007 - 14:46:47 CDT)
- Re: frame number input in tcl and direct mol graph display update (II) (Fri Jul 27 2007 - 12:40:35 CDT)
- Re: dssp in vmd (II) (Fri Jul 27 2007 - 12:42:49 CDT)
- Re: Antw: Re: CAVE & Vmd (Thu Jul 26 2007 - 16:06:00 CDT)
- Re: python and C++ extensions (Thu Jul 26 2007 - 16:40:47 CDT)
- Re: frame number input in tcl and direct mol graph display update (II) (Thu Jul 26 2007 - 16:25:21 CDT)
- Re: installation errors with src/hesstrans_wrap.C (Thu Jul 26 2007 - 16:23:47 CDT)
- Re: Display Grasp potential map in VMD (Thu Jul 26 2007 - 16:16:27 CDT)
- Re: badwater script - help (Thu Jul 26 2007 - 16:28:08 CDT)
- Re: residue_rmsd.tcl (Thu Jul 26 2007 - 16:20:50 CDT)
- Re: residue_rmsd.tcl (Thu Jul 26 2007 - 12:42:11 CDT)
- Re: nonstandard solvate + cyclic peptides in explicit DMSO box + gofr (Thu Jul 26 2007 - 11:33:52 CDT)
- Re: vmd residue position (Thu Jul 26 2007 - 11:29:58 CDT)
- Re: how to run VMD on IBM machines (Wed Jul 25 2007 - 13:02:32 CDT)
- Re: Calculating volumetric data for a molecule (Tue Jul 24 2007 - 23:10:06 CDT)
- Re: Reading a pdbqt file (generated from AutoDock) (Fri Jul 20 2007 - 13:27:53 CDT)
- Re: Recognized atom types by VMD PDB reader (Fri Jul 20 2007 - 13:31:15 CDT)
- Re: Reading a pdbqt file (generated from AutoDock) (Fri Jul 20 2007 - 11:27:39 CDT)
- Re: what's the unit for color scale data range? (Fri Jul 20 2007 - 11:23:46 CDT)
- Re: how to save a list in a file (Tue Jul 17 2007 - 12:07:55 CDT)
- Re: CAVE & Vmd (Tue Jul 17 2007 - 11:46:13 CDT)
- Re: how to save a list in a file (Tue Jul 17 2007 - 11:08:19 CDT)
- Re: VRPN, phantom and VMD... (Mon Jul 16 2007 - 16:11:10 CDT)
- Re: TkCon problem (Mon Jul 16 2007 - 15:39:23 CDT)
- Re: Language definitions - \usepackage{listings} (Mon Jul 16 2007 - 11:58:29 CDT)
- Re: electron density map is shifted? (Thu Jul 12 2007 - 22:28:21 CDT)
- Re: Electron microscopy surface with VMD? (Thu Jul 12 2007 - 16:57:22 CDT)
- Re: shifting of the origin (Wed Jul 11 2007 - 23:56:48 CDT)
- Re: Using multiple CPUS (Tue Jul 10 2007 - 20:26:32 CDT)
- Away until July 12, self-help encouraged! (Thu Jun 28 2007 - 17:22:36 CDT)
- Re: get charge (Thu Jun 28 2007 - 13:07:51 CDT)
- Re: parallel capabilities (Tue Jun 26 2007 - 18:06:07 CDT)
- Re: Text/Labels on ray tracing external renderer (Tue Jun 26 2007 - 15:25:00 CDT)
- Re: Using VMD just to plot some coordinates from a mathematical/geometrical model (Tue Jun 26 2007 - 15:19:17 CDT)
- Re: Text/Labels on ray tracing external renderer (Tue Jun 26 2007 - 15:06:53 CDT)
- Re: help on making stereo diagram (Tue Jun 26 2007 - 15:46:56 CDT)
- Re: redefining macros vs. update of selections (Tue Jun 26 2007 - 14:52:31 CDT)
- Re: parallel capabilities (Tue Jun 26 2007 - 14:56:29 CDT)
- Re: Using VMD just to plot some coordinates from a mathematical/geometrical model (Fri Jun 22 2007 - 17:51:59 CDT)
- Re: center scaling and rotation (Fri Jun 22 2007 - 17:25:01 CDT)
- Re: Rotate dx map (Fri Jun 22 2007 - 17:25:56 CDT)
- Re: Text/Labels on ray tracing external renderer (Fri Jun 22 2007 - 15:35:12 CDT)
- Re: Loading up PDB files in absolute coordinates (Fri Jun 22 2007 - 15:01:26 CDT)
- Re: Loading up PDB files in absolute coordinates (Fri Jun 22 2007 - 14:38:40 CDT)
- Re: Loading up PDB files in absolute coordinates (Fri Jun 22 2007 - 13:52:21 CDT)
- Re: Loading up PDB files in absolute coordinates (Fri Jun 22 2007 - 13:24:30 CDT)
- Re: Text/Labels on ray tracing external renderer (Fri Jun 22 2007 - 13:03:41 CDT)
- Re: VMD 1.8.6 Not Responding! (Thu Jun 21 2007 - 22:58:37 CDT)
- Re: VMD 1.8.6 Not Responding! (Thu Jun 21 2007 - 10:45:07 CDT)
- Re: VMD 1.8.6 Not Responding! (Thu Jun 21 2007 - 00:28:07 CDT)
- Re: Changing Beta values for each frame of a trajectory.. (Wed Jun 20 2007 - 22:50:19 CDT)
- Re: Box dimensions (Wed Jun 20 2007 - 10:55:34 CDT)
- Re: Box dimensions (Tue Jun 19 2007 - 18:03:34 CDT)
- Re: atomsel: writepdb failed for vmd 1.8.6 (Tue Jun 19 2007 - 17:21:01 CDT)
- Re: Tracking bond length changes in a simulation (Tue Jun 19 2007 - 10:53:00 CDT)
- Re: VMD for PPC64 SLES9? (Tue Jun 19 2007 - 10:49:49 CDT)
- Re: vmd visualization and CMAP run problem (Mon Jun 18 2007 - 16:59:19 CDT)
- Re: vmd visualization and CMAP run problem (Mon Jun 18 2007 - 16:47:26 CDT)
- Re: atom position update for reference atom list (Mon Jun 18 2007 - 16:43:13 CDT)
- Re: VMD 1.8.6 Not Responding! (Mon Jun 18 2007 - 16:04:51 CDT)
- Re: Solvate 1.2 problem option -ion (Fri Jun 15 2007 - 16:12:51 CDT)
- Re: Mac OSX TK console issues (Fri Jun 15 2007 - 15:42:52 CDT)
- Re: Help with Tcl script (Wed Jun 13 2007 - 03:23:27 CDT)
- Re: vmd visualization and CMAP run problem (Wed Jun 13 2007 - 03:04:49 CDT)
- Re: script for atom collisions (Wed Jun 13 2007 - 03:01:10 CDT)
- Re: show atom number in xyz file (Wed Jun 13 2007 - 02:52:12 CDT)
- Re: Re: PME plugin (Tue Jun 12 2007 - 16:48:54 CDT)
- Re: superposition (Tue Jun 12 2007 - 15:30:23 CDT)
- Re: Nearest neighbor selection (Tue Jun 12 2007 - 10:36:02 CDT)
- Re: script for atom collisions (Mon Jun 11 2007 - 15:35:55 CDT)
- Re: Question about rendering across multiple frames (Mon Jun 11 2007 - 15:33:26 CDT)
- Re: Python Module (Fri Jun 08 2007 - 10:38:01 CDT)
- Re: .xyz file, namelist index too large error (Thu Jun 07 2007 - 11:11:43 CDT)
- Duplicate VMD-L emails... (Tue Jun 05 2007 - 13:11:26 CDT)
- Re: Fwd: vmd installation Linux Debian i386 (Tue Jun 05 2007 - 13:02:26 CDT)
- Re: Installing VMD 1.8.6 (Tue Jun 05 2007 - 10:31:11 CDT)
- Re: What is the influence of PBC on measure bond? (Tue Jun 05 2007 - 10:12:00 CDT)
- Re: VMD-Main window doesn't load after change in .vmdrc (Mon Jun 04 2007 - 20:59:37 CDT)
- Re: list in TCL (Mon Jun 04 2007 - 19:36:42 CDT)
- Re: Installing VMD 1.8.6 (Mon Jun 04 2007 - 16:45:08 CDT)
- Re: labeling for movie title (Mon Jun 04 2007 - 16:04:21 CDT)
- Re: removing water molecules (Mon Jun 04 2007 - 15:31:53 CDT)
- Re: load state and alignments (Mon Jun 04 2007 - 14:41:21 CDT)
- Re: Distance measurement via measure bond (Mon Jun 04 2007 - 14:36:31 CDT)
- Re: Installing VMD 1.8.6 (Mon Jun 04 2007 - 13:09:42 CDT)
- Re: CCL: show ruler in VMD (Fri Jun 01 2007 - 14:11:07 CDT)
- Re: problem with installing VMD on a LINUX cluster (Wed May 30 2007 - 16:34:37 CDT)
- Re: help on trajectory density map (Tue May 29 2007 - 10:07:15 CDT)
- Re: colomb map in volmap tool (Mon May 28 2007 - 17:17:23 CDT)
- Re: ligand parametrization (Mon May 28 2007 - 16:12:02 CDT)
- Re: Adjusting perspective (Mon May 28 2007 - 15:57:51 CDT)
- Re: non-standard residue (Mon May 28 2007 - 15:50:41 CDT)
- Re: Problem with bondsrecalc (Mon May 28 2007 - 15:38:50 CDT)
- Re: problem with installing VMD on a LINUX cluster (Mon May 28 2007 - 15:43:50 CDT)
- Re: Installation Error Involving TLC (Mon May 28 2007 - 15:35:26 CDT)
- Re: help on trajectory density map (Mon May 28 2007 - 15:34:23 CDT)
- Re: How to use remote GLSL rendering capabilities? (Mon May 28 2007 - 15:32:26 CDT)
- Re: How to use remote GLSL rendering capabilities? (Mon May 28 2007 - 15:24:36 CDT)
- travelling... (Fri May 25 2007 - 11:00:52 CDT)
- Re: volmap command and masks (Sun May 20 2007 - 13:16:38 CDT)
- Re: Automatically shutting down VMD after NAMD terminates IMD connection (Sun May 20 2007 - 13:13:04 CDT)
- Re: the error of the plugin QMTool in read gaussian output file (Fri May 18 2007 - 16:56:20 CDT)
- Re: absolute C.O.M motion calculation script: help (Fri May 18 2007 - 16:54:42 CDT)
- Re: inserting protein into membrane (Fri May 18 2007 - 16:21:10 CDT)
- Re: unreadable prmtop's and reference memory error? (Thu May 17 2007 - 12:21:26 CDT)
- Re: question about making movies (Wed May 16 2007 - 14:44:17 CDT)
- Re: Reading additional atom properties (Tue May 15 2007 - 13:12:34 CDT)
- Re: An remark on PoV output (Mon May 14 2007 - 12:57:26 CDT)
- Re: AutoIMD on vmd 1.8.6 IRIX.... (Mon May 14 2007 - 12:52:34 CDT)
- Re: JMV (Mon May 14 2007 - 12:51:15 CDT)
- Re: GLSL rendering problems (??) (Mon May 14 2007 - 12:42:08 CDT)
- Re: Fast routines for distance evaluations using PBC. (Fri May 11 2007 - 13:46:39 CDT)
- Re: Fast routines for distance evaluations using PBC. (Fri May 11 2007 - 13:15:27 CDT)
- Re: show atom number in xyz file (Fri May 11 2007 - 11:06:17 CDT)
- Re: Fwd: vmd first installation (Fri May 11 2007 - 10:51:53 CDT)
- Re: Problem loading pdb file on VMD (Wed May 09 2007 - 17:56:18 CDT)
- Re: Problem loading pdb file on VMD (Wed May 09 2007 - 02:48:42 CDT)
- Re: drawing a membrane (Tue May 08 2007 - 16:34:02 CDT)
- Re: installing MSMS on OS X 10.4.9 (Intel) (Tue May 08 2007 - 14:20:52 CDT)
- Re: SASA measurements (Tue May 08 2007 - 14:00:49 CDT)
- Re: installing MSMS on OS X 10.4.9 (Intel) (Tue May 08 2007 - 13:44:43 CDT)
- Re: installing MSMS on OS X 10.4.9 (Intel) (Mon May 07 2007 - 21:44:39 CDT)
- Re: color by frame? (Mon May 07 2007 - 10:09:23 CDT)
- Re: How to align a protein normal to lipid bilayer (Sun May 06 2007 - 23:49:40 CDT)
- Re: vmd problem: session ended (Tue May 01 2007 - 12:50:19 CDT)
- Re: Dynamic 'Determine file type' list in main menu !?! (Tue May 01 2007 - 12:38:46 CDT)
- Re: vmd 1.8.6 on MacOS X, with python support, anyone? (Tue May 01 2007 - 12:35:50 CDT)
- Re: GLSL rendering problems (??) (Wed Apr 25 2007 - 09:53:54 CDT)
- Re: GLSL rendering problems (??) (Tue Apr 24 2007 - 16:19:59 CDT)
- Re: GLSL rendering problems (??) (Tue Apr 24 2007 - 15:52:30 CDT)
- Re: how to reset a timed out connection (Tue Apr 24 2007 - 14:57:41 CDT)
- Re: Cheap 3D Glasses (Tue Apr 24 2007 - 14:26:11 CDT)
- Re: how to reset a timed out connection (Tue Apr 24 2007 - 13:44:13 CDT)
- Re: how to reset a timed out connection (Tue Apr 24 2007 - 11:27:22 CDT)
- Re: How to visualize phi maps calculated with delphi V. 4 (Mon Apr 23 2007 - 14:55:59 CDT)
- Re: tcl code atomselect problem in analysis (Mon Apr 23 2007 - 11:12:07 CDT)
- Re: How to visualize phi maps calculated with delphi V. 4 (Fri Apr 20 2007 - 21:07:01 CDT)
- Re: .xyz to .dcd using catdcd (Fri Apr 20 2007 - 15:36:36 CDT)
- Re: process and plot matrix data (Fri Apr 20 2007 - 14:47:44 CDT)
- Re: About using trace (Fri Apr 20 2007 - 12:02:14 CDT)
- Re: How can i obtain a force and trajectory data of a PHANTOM in IMD simulation (Wed Apr 18 2007 - 16:51:47 CDT)
- Re: How can i obtain a force and trajectory data of a PHANTOM in IMD simulation (Wed Apr 18 2007 - 16:50:16 CDT)
- Re: vmd can't start up after being installed in linux (Wed Apr 18 2007 - 16:14:32 CDT)
- Re: secondary_struct script (Wed Apr 18 2007 - 12:48:36 CDT)
- Re: vmd can't start up after being installed in linux (Wed Apr 18 2007 - 11:03:04 CDT)
- Re: vmd can't start up after being installed in linux (Tue Apr 17 2007 - 22:50:39 CDT)
- Re: GLSL rendering in VMD 1.8.6 (Tue Apr 17 2007 - 14:43:58 CDT)
- Re: sasa (Tue Apr 17 2007 - 13:15:22 CDT)
- Re: RE: "which files to make a spatial grid?" => Bug for list command? (Tue Apr 17 2007 - 13:11:52 CDT)
- Re: .xyz to .dcd using catdcd (Tue Apr 17 2007 - 12:48:12 CDT)
- Re: Strange characters using writemol2 (vmd 1.8.5) (Mon Apr 16 2007 - 18:39:17 CDT)
- Re: Tinker trajectory file (Mon Apr 16 2007 - 18:27:52 CDT)
- Re: VMD for Windows 64bits (Mon Apr 16 2007 - 11:01:48 CDT)
- Re: Where is the memory leakage? (Sun Apr 15 2007 - 01:14:52 CDT)
- Re: winvmd error during calculation (Sat Apr 14 2007 - 00:50:21 CDT)
- Re: GLSL rendering in VMD 1.8.6 (Fri Apr 13 2007 - 22:09:35 CDT)
- Re: sasa (Fri Apr 13 2007 - 11:07:50 CDT)
- Re: VMD installation (Fri Apr 13 2007 - 10:38:45 CDT)
- Re: sasa (Thu Apr 12 2007 - 15:08:32 CDT)
- Re: VMD 1.8.6 GLSL problem (Tue Apr 10 2007 - 10:22:57 CDT)
- Re: mismatch between phi and pdb files (Tue Apr 10 2007 - 08:34:19 CDT)
- Re: VMD 1.8.6 GLSL problem (Tue Apr 10 2007 - 08:00:26 CDT)
- Re: If I want to modify measure.C, what should I do? (Mon Apr 09 2007 - 16:52:50 CDT)
- Re: VMD 1.8.6 GLSL problem (Mon Apr 09 2007 - 01:15:44 CDT)
- Re: Re: windows version of VMD (Mon Apr 09 2007 - 01:01:35 CDT)
- Re: 'SURF' representation problem (Sun Apr 08 2007 - 13:47:34 CDT)
- Re: 1.8.6 install for Windows OpenGL (Microsoft Windows 2000/XP/Vista (32-bit) using OpenGL) (Sun Apr 08 2007 - 11:26:33 CDT)
- Announce: VMD 1.8.6 Released! (Sun Apr 08 2007 - 00:51:52 CDT)
- Re: GLSL rendering problems (Thu Apr 05 2007 - 15:34:03 CDT)
- Re: GLSL rendering problems (Thu Apr 05 2007 - 14:55:13 CDT)
- Re: Problem with Reading Binary ccp4 File Generated by CHARMM (Thu Apr 05 2007 - 12:22:23 CDT)
- Re: using Grace instead of Multiplot (Wed Apr 04 2007 - 12:13:45 CDT)
- Re: surface max_density error (Tue Apr 03 2007 - 12:31:16 CDT)
- Re: VMD for Win32 API based PC CAVE (Mon Apr 02 2007 - 11:57:45 CDT)
- Re: VMD for Win32 API based PC CAVE (Mon Apr 02 2007 - 11:55:34 CDT)
- Re: How do I overlap that specific nucletide between a protein and RNA? (Sun Apr 01 2007 - 23:07:46 CDT)
- Re: Can anyone help me out with this script (Sun Apr 01 2007 - 23:03:24 CDT)
- Re: Plugin Issue (Sat Mar 31 2007 - 00:19:20 CDT)
- Re: Can anyone help me out with this script (Sat Mar 31 2007 - 00:05:17 CDT)
- Re: 'SURF' representation problem (Thu Mar 29 2007 - 18:26:50 CDT)
- Re: python pro.align() (Thu Mar 29 2007 - 16:22:23 CDT)
- Re: 'SURF' representation problem (Thu Mar 29 2007 - 16:10:43 CDT)
- Re: how to view the dynamics in power point presentation (Thu Mar 29 2007 - 11:43:52 CDT)
- Re: Moving volume data with molecule (Thu Mar 29 2007 - 11:31:05 CDT)
- Re: dcd header information missing (Thu Mar 29 2007 - 11:03:17 CDT)
- Re: problem creating psf (Wed Mar 28 2007 - 22:27:50 CDT)
- Re: representation selection funnies (Wed Mar 28 2007 - 22:25:26 CDT)
- Re: doubts in movie making using vmd. (Wed Mar 28 2007 - 21:52:17 CDT)
- New VMD 1.8.6b15 installer for Windows XP x64... (Wed Mar 28 2007 - 18:17:29 CDT)
- Re: How to make a movie in VMD using principle component analysis (Wed Mar 28 2007 - 14:43:14 CDT)
- Re: Plugin Issue (Wed Mar 28 2007 - 11:13:06 CDT)
- Re: dynamic bonding (Tue Mar 27 2007 - 15:39:26 CDT)
- Re: representation selection funnies (Tue Mar 27 2007 - 14:25:01 CDT)
- Re: Question about overlaying structures (Tue Mar 27 2007 - 13:06:33 CDT)
- Re: problem creating psf (Tue Mar 27 2007 - 10:34:31 CDT)
- Re: PBCTools Plugin (Mon Mar 26 2007 - 15:56:23 CDT)
- Re: windows version of VMD (Mon Mar 26 2007 - 11:57:37 CDT)
- Re: Re: windows version of VMD (Sat Mar 24 2007 - 17:11:33 CDT)
- Re: Re: windows version of VMD (Sat Mar 24 2007 - 17:06:09 CDT)
- Re: hbond analysis (Sat Mar 24 2007 - 11:13:25 CDT)
- Re: can't read pdb file (Sat Mar 24 2007 - 00:52:55 CDT)
- Re: windows version of VMD (Fri Mar 23 2007 - 17:17:31 CDT)
- Re: VMD_orient (Fri Mar 23 2007 - 14:30:22 CDT)
- Re: hbond (Fri Mar 23 2007 - 14:08:04 CDT)
- Re: script to visualize NMR constrains? (Fri Mar 23 2007 - 14:06:02 CDT)
- Re: coloring names (Fri Mar 23 2007 - 14:01:05 CDT)
- Re: Draw a circle (Fri Mar 23 2007 - 10:25:36 CDT)
- Re: visualizing NMR constrains (Thu Mar 22 2007 - 21:06:20 CDT)
- Re: How to superimpose trajectories (Thu Mar 22 2007 - 10:46:08 CDT)
- Re: colors (Thu Mar 22 2007 - 10:00:06 CDT)
- Re: How to superimpose trajectories (Wed Mar 21 2007 - 15:33:56 CDT)
- Re: How to superimpose trajectories (Wed Mar 21 2007 - 15:26:20 CDT)
- Re: Any way to output contact map data (Wed Mar 21 2007 - 01:42:15 CDT)
- Re: graphic update (Tue Mar 20 2007 - 22:33:34 CDT)
- Re: graphic update (Tue Mar 20 2007 - 20:40:09 CDT)
- Re: OmpF biological unit (Mon Mar 19 2007 - 11:29:09 CDT)
- Re: Need helps about connecting phantom with VMD through VRPN (Mon Mar 19 2007 - 10:08:54 CDT)
- Re: Scripting problem with h-bond listing (Sun Mar 18 2007 - 01:54:15 CDT)
- Re: Question about overlaying structures (Thu Mar 15 2007 - 22:16:12 CDT)
- Re: VMD 1.8.6b binaries for win32? (Thu Mar 15 2007 - 18:48:14 CDT)
- Re: export Ramachandran datas (Thu Mar 15 2007 - 16:23:28 CDT)
- Re: NAMD Energy - Hexagonal Cell (Thu Mar 15 2007 - 14:03:48 CDT)
- Re: molecule orientation in saved state (Thu Mar 15 2007 - 13:40:07 CDT)
- Re: how to set atom index (Thu Mar 15 2007 - 13:20:12 CDT)
- Re: VMD 1.8.6b binaries for win32? (Wed Mar 14 2007 - 17:08:48 CDT)
- Re: Measuring specific distances over a trajectory (Wed Mar 14 2007 - 16:56:18 CDT)
- Re: Problems running APBS (Tue Mar 13 2007 - 14:32:22 CDT)
- Re: Problems running APBS (Tue Mar 13 2007 - 13:44:45 CDT)
- Re: Re: VolumeSlices (Tue Mar 13 2007 - 10:21:19 CDT)
- Re: Movie Maker: How to specify use of trajectory in the movie script file (Mon Mar 12 2007 - 20:56:51 CDT)
- Re: How to specify the orientation of the molecule (Mon Mar 12 2007 - 20:44:34 CDT)
- Re: VolumeSlices (Mon Mar 12 2007 - 17:29:11 CDT)
- Re: ed and vmd (Mon Mar 12 2007 - 17:23:24 CDT)
- Re: vmd on core 2 duo (Mon Mar 12 2007 - 09:21:47 CDT)
- Re: DCD for windows (Mon Mar 12 2007 - 01:15:22 CDT)
- Re: VMD (Sun Mar 11 2007 - 18:49:02 CDT)
- Re: VolumeSlices (Fri Mar 09 2007 - 10:10:11 CST)
- Re: VolumeSlices (Fri Mar 09 2007 - 09:42:39 CST)
- Re: Memory problems with Multiseq (Thu Mar 08 2007 - 17:38:50 CST)
- Re: count variable number of molecules (Wed Mar 07 2007 - 16:45:56 CST)
- Re: morph (Wed Mar 07 2007 - 16:43:29 CST)
- Re: Re: New Molecule (or Load Data) resets viewpoint of Display. Why? (Wed Mar 07 2007 - 16:41:04 CST)
- Re: unusual residue type problem.. (Wed Mar 07 2007 - 13:34:35 CST)
- Re: Locating channel using hole (Wed Mar 07 2007 - 13:26:41 CST)
- Re: DCD for windows (Tue Mar 06 2007 - 16:20:27 CST)
- Re: OpenGL problem (Tue Mar 06 2007 - 16:17:15 CST)
- Re: Delete Volume Maps via Script (Tue Mar 06 2007 - 14:47:07 CST)
- Re: unusual residue type problem.. (Tue Mar 06 2007 - 12:52:25 CST)
- Re: Locating channel using hole (Tue Mar 06 2007 - 12:43:42 CST)
- Re: Configuration file (Tue Mar 06 2007 - 10:02:47 CST)
- Re: New Molecule (or Load Data) resets viewpoint of Display. Why? (Mon Mar 05 2007 - 17:06:29 CST)
- Re: vmd core dump on IRIX (Mon Mar 05 2007 - 16:30:10 CST)
- Re: E-D stereo glasses (Sat Mar 03 2007 - 14:09:22 CST)
- Re: Compiling VMD from source on SDSC Datastar (AIX 5.2) (Fri Mar 02 2007 - 17:15:22 CST)
- Re: Cave and usr keys defined in tcl (Wed Feb 28 2007 - 00:00:22 CST)
- Re: Tracing VMD variables (Tue Feb 27 2007 - 13:31:21 CST)
- Re: Re: bug report in VMD 1.8.5 (Tue Feb 27 2007 - 12:48:46 CST)
- Re: VMD open GL Display problem (Tue Feb 27 2007 - 11:20:36 CST)
- Re: Re: bug report in VMD 1.8.5 (Mon Feb 26 2007 - 16:41:14 CST)
- Re: Small annoyance with tachion (Wed Feb 21 2007 - 17:27:18 CST)
- Re: Isosurface rendering (Wed Feb 21 2007 - 17:21:10 CST)
- Re: Isosurface rendering (Wed Feb 21 2007 - 11:45:22 CST)
- Re: superimposing two structures and getting the coordinates (Tue Feb 20 2007 - 12:56:53 CST)
- Re: Isosurface rendering (Tue Feb 20 2007 - 12:53:21 CST)
- Re: PC-gamess (Tue Feb 20 2007 - 10:55:57 CST)
- Re: Isosurface rendering (Tue Feb 20 2007 - 10:44:36 CST)
- Re: 3D grid data to 2D contour? (Tue Feb 20 2007 - 02:04:57 CST)
- Anyone have cyclic structures I can use for testing? (Tue Feb 20 2007 - 01:28:29 CST)
- Re: Files closing/Memory issues in VMD (Mon Feb 19 2007 - 17:30:16 CST)
- Re: Small annoyance with tachion (Sun Feb 18 2007 - 20:45:22 CST)
- Re: Small annoyance with tachion (Sat Feb 17 2007 - 12:22:25 CST)
- Re: stereo view (Fri Feb 16 2007 - 17:53:08 CST)
- Re: Measure atoms volume on VMD (Thu Feb 15 2007 - 23:02:17 CST)
- Re: Bug in the tcl script (Thu Feb 15 2007 - 22:44:32 CST)
- Re: deleting at vmd console (Thu Feb 15 2007 - 22:39:08 CST)
- Re: GL window offset problem (Thu Feb 15 2007 - 13:05:37 CST)
- Re: aligning molecules with different number of atoms (Mon Feb 12 2007 - 12:01:58 CST)
- Re: VMD-1.8.5: GLSL & NVidia troubles + fixed previous Spaceball problem (Sat Feb 10 2007 - 23:58:18 CST)
- Re: question about rotations (Fri Feb 09 2007 - 18:02:33 CST)
- Re: How to save the snapshot of my protein? (Fri Feb 09 2007 - 10:40:29 CST)
- Re: Changing the display window size in a script (Fri Feb 09 2007 - 03:06:28 CST)
- Re: How to save the snapshot of my protein? (Fri Feb 09 2007 - 02:59:19 CST)
- Re: Assigning Color Codes for stress/force in .xyz trajectory files (Fri Feb 09 2007 - 02:56:59 CST)
- Re: stride failed (Fri Feb 09 2007 - 02:24:12 CST)
- Re: Saving work in VMD--this seems ridiculously difficult! (Thu Feb 08 2007 - 18:34:34 CST)
- Making interactive 3-D PDF files using VMD 1.8.6 beta 7 (Thu Feb 08 2007 - 18:11:53 CST)
- Re: viewpoint (Thu Feb 08 2007 - 12:54:27 CST)
- Re: H-Bond display in VMD (Thu Feb 08 2007 - 12:37:03 CST)
- Re: making movie file (Mon Feb 05 2007 - 23:05:00 CST)
- Re: rendering time bars or other vmd added graphics with povray (Mon Feb 05 2007 - 15:17:08 CST)
- Re: Re: namd-l: too large an area/lipid in POPE bilayers using membrane plugin (Mon Feb 05 2007 - 14:52:48 CST)
- Re: about CHARMM electrostatic potential (Mon Feb 05 2007 - 14:47:51 CST)
- Re: indented atomselect variables (Mon Feb 05 2007 - 14:45:44 CST)
- Re: about CHARMM electrostaic potential (Mon Feb 05 2007 - 11:03:04 CST)
- Re: Units for Measure Dipole (Mon Feb 05 2007 - 10:32:40 CST)
- Re: Error while running scripts: terminate called after throwing an instance of 'std::bad_alloc' (Mon Feb 05 2007 - 10:04:31 CST)
- Re: Regarding com file error (Mon Feb 05 2007 - 10:01:01 CST)
- Re: creating gif animation with povray (Mon Feb 05 2007 - 09:56:28 CST)
- Re: volume slices (Sun Feb 04 2007 - 15:09:52 CST)
- Re: cartoon problems (encore) (Sat Feb 03 2007 - 15:39:17 CST)
- Re: Error while running scripts: terminate called after throwing an instance of 'std::bad_alloc' (Sat Feb 03 2007 - 00:45:58 CST)
- Re: creating gif animation with povray (Sat Feb 03 2007 - 00:54:16 CST)
- Re: Error while running scripts: terminate called after throwing an instance of 'std::bad_alloc' (Fri Feb 02 2007 - 16:21:44 CST)
- Re: addition on CHARMM electrostatic pot. (Thu Feb 01 2007 - 17:27:36 CST)
- Re: VMD performance on Vista (Thu Feb 01 2007 - 17:10:47 CST)
- Re: sending arguments to tcl (Thu Feb 01 2007 - 16:53:24 CST)
- Re: VMD error messages on intel iMac (Thu Feb 01 2007 - 16:02:46 CST)
- Re: sending arguments to tcl (Thu Feb 01 2007 - 14:56:00 CST)
- Re: CHARMM electrostatic potential (Thu Feb 01 2007 - 11:16:38 CST)
- Re: RES: uNABLE TO OPEN VMD ON WINDOWS 2K (Thu Feb 01 2007 - 11:05:32 CST)
- Re: uNABLE TO OPEN VMD ON WINDOWS 2K (Wed Jan 31 2007 - 21:32:47 CST)
- Re: animate write of a selection in Linux version of VMD (Wed Jan 31 2007 - 16:10:46 CST)
- Re: Volume Slice (Wed Jan 31 2007 - 15:59:36 CST)
- Re: About CHARMM electrostaic potential map (Wed Jan 31 2007 - 13:37:30 CST)
- Announce: New VMD Images and Movies tutorial posted online... (Wed Jan 31 2007 - 00:23:46 CST)
- Re: Python development (Tue Jan 30 2007 - 16:49:23 CST)
- Re: GLSL error (Mon Jan 29 2007 - 15:22:50 CST)
- Re: draw line (Fri Jan 26 2007 - 17:16:22 CST)
- Re: Getting (or changing) molinfo matrices (Fri Jan 26 2007 - 02:07:34 CST)
- Re: Regarding paratool (Fri Jan 26 2007 - 02:10:24 CST)
- Re: Error when compiling Plugins from source code (Thu Jan 25 2007 - 14:49:56 CST)
- Re: how to run membrane.tcl from user-defined location ? (Thu Jan 25 2007 - 02:01:12 CST)
- Re: Installing VMD on a PC (Thu Jan 25 2007 - 01:03:19 CST)
- Re: vector (Wed Jan 24 2007 - 12:19:36 CST)
- Re: Getting (or changing) molinfo matrices (Wed Jan 24 2007 - 12:05:08 CST)
- Re: Converting Files with VMD (Tue Jan 23 2007 - 17:47:54 CST)
- Re: [Fwd: pdb from trajectory] some clarification (Tue Jan 23 2007 - 13:45:07 CST)
- Re: Solvent accessibility with sasa (Thu Jan 18 2007 - 16:33:52 CST)
- Re: Large Molecule in CAVE Enviroment (Thu Jan 18 2007 - 01:59:41 CST)
- Re: Tk console issues (Wed Jan 17 2007 - 15:59:16 CST)
- Re: scripts in windows version (Wed Jan 17 2007 - 15:08:24 CST)
- Re: Windows/Cannot generate .dx file! (Wed Jan 17 2007 - 14:16:35 CST)
- Re: Loading DCD files (Wed Jan 17 2007 - 14:06:00 CST)
- Re: VMD quits (Wed Jan 17 2007 - 12:59:16 CST)
- Re: problem writing correct format psf file from vmd tk-console (Wed Jan 17 2007 - 12:26:48 CST)
- Re: loading molecules with increasing number of backbone atoms in VMD (Wed Jan 17 2007 - 12:05:37 CST)
- Re: scripts in windows version (Wed Jan 17 2007 - 12:01:20 CST)
- Re: MSMS on Windows (Wed Jan 17 2007 - 01:35:38 CST)
- Re: How to change title of display window? (Wed Jan 17 2007 - 01:27:52 CST)
- Re: VMD forks to background; can I disable this? (Wed Jan 17 2007 - 01:27:08 CST)
- Re: VMD scene information (Thu Jan 11 2007 - 15:15:22 CST)
- Re: VMD scene information (Wed Jan 10 2007 - 20:01:32 CST)
- Re: VMD scene information (Wed Jan 10 2007 - 12:55:53 CST)
- Re: Antw: Re: Unaligned access to ... (Tue Jan 09 2007 - 14:18:54 CST)
- Re: Grab tool: picking problems (Tue Jan 09 2007 - 14:25:54 CST)
- Re: Anyone have catdcd-4.0 for BlueGene? (Mon Jan 08 2007 - 15:41:10 CST)
- Re: error message using gofr (Mon Jan 08 2007 - 11:29:56 CST)
- Re: Unaligned access to ... (Mon Jan 08 2007 - 11:09:42 CST)
- Re: Removing water in tcl (Thu Jan 04 2007 - 16:38:59 CST)
- Re: vmd questions (Wed Jan 03 2007 - 13:05:34 CST)
- Re: recenter peptide in PBC (Wed Jan 03 2007 - 10:38:43 CST)
- Re: Fwd: Writing pdb without chain identifier (Wed Jan 03 2007 - 10:31:05 CST)
- Re: box information amber crdbox (Wed Jan 03 2007 - 10:23:46 CST)
- Re: Vizualization Problem while opening DX file (Wed Jan 03 2007 - 10:03:25 CST)
- Re: VMD email support next two weeks (Tue Dec 19 2006 - 01:17:02 CST)
- Re: CAVE Sensor Question (Tue Dec 19 2006 - 01:10:20 CST)
- Re: Stride (Tue Dec 19 2006 - 01:00:24 CST)
- VMD email support next two weeks (Sun Dec 17 2006 - 21:19:42 CST)
- Re: How to let vmd do secondary structure judgement for each frame and render it on play movie? (Sat Dec 16 2006 - 02:30:04 CST)
- Re: How to let vmd do secondary structure judgement for each frame and render it on play movie? (Fri Dec 15 2006 - 23:44:27 CST)
- Re: "cartoon" failing to show secondary structure--more info (Fri Dec 15 2006 - 14:08:59 CST)
- Re: "cartoon" failing to show secondary structure (Fri Dec 15 2006 - 11:13:05 CST)
- Re: moveby command in vmd (Fri Dec 15 2006 - 10:35:57 CST)
- Re: Installing VMD Windows version on 64-bit Windows Environment (Thu Dec 14 2006 - 14:41:09 CST)
- Re: electrostatic potential (Wed Dec 13 2006 - 15:56:25 CST)
- Re: Question about RMSD calculator (Tue Dec 12 2006 - 13:50:47 CST)
- Re: CAVE Question (Mon Dec 11 2006 - 10:21:12 CST)
- Re: drawing helices from partial aminoacids (Thu Dec 07 2006 - 11:04:39 CST)
- Re: Installing VMD 1.8.5 pon ubuntu linux (Mon Dec 04 2006 - 15:33:19 CST)
- Re: Antw: Re: CAve Question (Fri Dec 01 2006 - 10:53:06 CST)
- Re: problem with near clip (Fri Dec 01 2006 - 10:49:26 CST)
- Re: Installing VMD 1.8.5 pon ubuntu linux (Fri Dec 01 2006 - 10:41:00 CST)
- Re: problems with large structures (Fri Dec 01 2006 - 10:30:29 CST)
- Re: Poor man's stereolithography (Thu Nov 30 2006 - 10:42:08 CST)
- Re: Shutter glasses on VMD (Wed Nov 29 2006 - 15:19:25 CST)
- Re: Read dcd file error using vmd1.8.5 for windows (Wed Nov 29 2006 - 15:04:27 CST)
- Re: coloring residues with VMD (Wed Nov 29 2006 - 14:55:07 CST)
- Re: Antw: Re: CAve Question (Wed Nov 29 2006 - 14:25:37 CST)
- Re: ZN2 vs MG? (Wed Nov 29 2006 - 14:14:33 CST)
- Re: High res stl files (Tue Nov 28 2006 - 14:09:03 CST)
- Re: Read dcd file error using vmd1.8.5 for windows (Mon Nov 27 2006 - 22:21:59 CST)
- Re: CAve Question (Mon Nov 27 2006 - 14:50:57 CST)
- Re: VMD 1.8.3 works ok for 64-bit windows, but not VMD 1.8.5 (Fri Nov 24 2006 - 00:56:36 CST)
- Re: combine.tcl (Wed Nov 22 2006 - 12:12:14 CST)
- Re: Installing VMD Windows version on 64-bit Windows Environment (Wed Nov 22 2006 - 11:50:36 CST)
- Re: Writing a trajectory - with box information (Tue Nov 21 2006 - 13:22:11 CST)
- Re: Writing a trajectory - with box information (Tue Nov 21 2006 - 11:21:20 CST)
- Re: Running a script using text mode (Tue Nov 21 2006 - 10:31:11 CST)
- Re: Writing a trajectory - with box information (Mon Nov 20 2006 - 22:46:26 CST)
- Re: trajectory from separate frames (Mon Nov 20 2006 - 20:57:38 CST)
- VMD 1.8.6 test versions available, feedback requested... (Mon Nov 20 2006 - 15:26:33 CST)
- Re: Paratool problem (Mon Nov 20 2006 - 13:45:11 CST)
- Re: PSF files append!! (Fri Nov 17 2006 - 16:33:52 CST)
- Re: movie for Openoffice (Fri Nov 17 2006 - 15:55:00 CST)
- Re: Re:Problem rendering NewCartoon (Fri Nov 17 2006 - 13:37:26 CST)
- Re: Problem rendering NewCartoon (Fri Nov 17 2006 - 12:50:31 CST)
- Re: Change properties of representations - batch mode (Fri Nov 17 2006 - 11:13:05 CST)
- Re: VMD 'guesses' no. of frames? (Thu Nov 16 2006 - 22:00:44 CST)
- Re: VMD 'guesses' no. of frames? (Thu Nov 16 2006 - 21:49:09 CST)
- Re: VMD 'guesses' no. of frames? (Thu Nov 16 2006 - 21:27:53 CST)
- Re: Color surfaces by electrostatic potential (Thu Nov 16 2006 - 17:18:24 CST)
- Re: Elastic Properties (Wed Nov 15 2006 - 18:07:44 CST)
- VMD 1.8.5 plugin update 1 posted... (Wed Nov 15 2006 - 17:12:58 CST)
- Re: Paratool problem (Wed Nov 15 2006 - 15:54:55 CST)
- Re: python (Mon Nov 13 2006 - 10:35:02 CST)
- Re: Displaying biological unit revisited (Tue Nov 07 2006 - 17:08:12 CST)
- Re: Reading box info. from PQR file (Tue Nov 07 2006 - 17:05:14 CST)
- Re: Connecting a phantom with NAMD and VMD (Tue Nov 07 2006 - 16:40:45 CST)
- Re: gamess plungin for PC Gamess (Tue Nov 07 2006 - 15:34:33 CST)
- Re: ribbons representation for RNA in vmd 1.8.5 (Mon Nov 06 2006 - 17:26:32 CST)
- Re: IED individual eigenvectors/movie (Thu Nov 02 2006 - 11:27:52 CST)
- Re: .pdb file from XMD (Thu Nov 02 2006 - 10:45:49 CST)
- Re: Displaying biological unit revisited (Wed Nov 01 2006 - 16:32:29 CST)
- Re: VMD 1.8.4 support for AMBER binary trajectory files (Tue Oct 31 2006 - 19:52:15 CST)
- Re: installation problem (Tue Oct 31 2006 - 19:49:04 CST)
- Re: problem about "mol load psf md.pdf pdb md.pdb" (Fri Oct 27 2006 - 13:21:31 CDT)
- Re: VMD - ATI video card (Fri Oct 27 2006 - 12:44:14 CDT)
- Re: xterm problem?? (Fri Oct 27 2006 - 11:39:50 CDT)
- Re: VMD not working with a Matrox Graphic Card (Thu Oct 26 2006 - 11:22:24 CDT)
- Re: How to get the coordinates of periodic image! (Wed Oct 25 2006 - 13:55:20 CDT)
- Re: EIGENVECTOR ANALYSIS (Wed Oct 25 2006 - 12:40:57 CDT)
- Re: external force (Tue Oct 24 2006 - 13:11:11 CDT)
- Re: Error installing VMD 1.8.5. (Mon Oct 23 2006 - 12:13:35 CDT)
- Re: Using VMDPLUGIN_register_tcl (Wed Oct 18 2006 - 13:14:01 CDT)
- Re: retrieving the center of mass for each frame of trajectory (Wed Oct 18 2006 - 12:58:30 CDT)
- Re: differentiating solvent molecules...... (Tue Oct 17 2006 - 12:57:41 CDT)
- Re: Possible bug in LAMMPS plugin (Fri Oct 13 2006 - 16:53:56 CDT)
- Re: HBonds Representation (Fri Oct 13 2006 - 15:00:33 CDT)
- Re: Python on Intel Mac? (Fri Oct 13 2006 - 14:12:10 CDT)
- Re: Volumetric data: Periodic expansion does not work; why? (Fri Oct 13 2006 - 13:55:15 CDT)
- Test build of CHARMM PBEQ electrostatics map reader plugin (Thu Oct 12 2006 - 16:10:49 CDT)
- Re: Python on Intel Mac? (Thu Oct 12 2006 - 15:37:31 CDT)
- Re: IED (Thu Oct 12 2006 - 15:28:12 CDT)
- Re: movie (Wed Oct 11 2006 - 18:25:14 CDT)
- Re: Exporting a protein surface into a mesh (plain text file) (Mon Oct 09 2006 - 12:18:33 CDT)
- Re: trace to newcartoon inconsistent display problem (Fri Oct 06 2006 - 18:06:51 CDT)
- Re: VMD PDB to LEAP Readable PDB (Fri Oct 06 2006 - 14:59:36 CDT)
- Re: problem viewing cube files (Fri Oct 06 2006 - 14:54:06 CDT)
- Re: trace to newcartoon inconsistent display problem (Fri Oct 06 2006 - 14:37:55 CDT)
- Re: Possible bug in LAMMPS plugin (Wed Oct 04 2006 - 00:24:11 CDT)
- Re: lammps trajectory (Wed Oct 04 2006 - 00:19:00 CDT)
- Re: save coordinates after moving them. (Wed Oct 04 2006 - 00:12:59 CDT)
- Re: Changing Text Style (Wed Oct 04 2006 - 00:10:36 CDT)
- Re: Selecting Atomnumber (Wed Oct 04 2006 - 00:06:25 CDT)
- Re: Error on DNA (Tue Oct 03 2006 - 23:52:24 CDT)
- Re: top2psf script (Tue Oct 03 2006 - 23:42:25 CDT)
- Re: save coordinates after moving them. (Tue Oct 03 2006 - 14:35:50 CDT)
- Re: Does volume coloring require GLSL rendering? (Tue Oct 03 2006 - 14:27:52 CDT)
- Re: Connectivity lost when loading second pdb (Tue Oct 03 2006 - 00:38:41 CDT)
- Re: problem loading dcd file (Sun Oct 01 2006 - 21:36:44 CDT)
- Re: Using namdplot from the command line (Thu Sep 28 2006 - 14:18:48 CDT)
- Re: VMD Installation Help (Tue Sep 26 2006 - 12:55:52 CDT)
- Re: GRASP plugin for VMD (Tue Sep 26 2006 - 12:52:06 CDT)
- Re: Re: sidechain atomselection (Mon Sep 25 2006 - 22:55:10 CDT)
- Re: 1.8.5: VASP plugin not correct (Mon Sep 25 2006 - 21:23:42 CDT)
- Re: 1.8.5: VASP plugin not correct (Mon Sep 25 2006 - 09:18:08 CDT)
- Re: 1.8.5: VASP plugin not correct (Mon Sep 25 2006 - 07:48:33 CDT)
- Re: 1.8.5: VASP plugin not correct (Mon Sep 25 2006 - 06:23:48 CDT)
- Re: What unit system does VMD use? (Sat Sep 23 2006 - 21:27:44 CDT)
- Re: visualizing charges (Sat Sep 23 2006 - 03:00:55 CDT)
- Re: 1.8.5: VASP plugin not correct (Fri Sep 22 2006 - 12:36:44 CDT)
- Re: Precompiled 1.8.5 for Linux-IA64 installs with wrong flags in lib directory? (Thu Sep 21 2006 - 05:53:47 CDT)
- Re: Computer for 3D visualization (Thu Sep 21 2006 - 05:51:23 CDT)
- Re: importing VMD python modules from external interpreterr (Thu Sep 21 2006 - 05:41:32 CDT)
- Re: VMD won't make mpg out of my trajectory (Wed Sep 20 2006 - 15:17:46 CDT)
- Re: ribbons representation for RNA in vmd 1.8.5 (Wed Sep 20 2006 - 13:56:33 CDT)
- Re: VMD won't make mpg out of my trajectory (Wed Sep 20 2006 - 13:47:03 CDT)
- Re: importing VMD python modules from external interpreterr (Tue Sep 19 2006 - 22:49:20 CDT)
- Re: how to show biological unit coordiates from PDB using VMD? (Sun Sep 17 2006 - 03:20:39 CDT)
- Re: problem in visualizing gaussian log file (Thu Sep 14 2006 - 13:21:22 CDT)
- Re: puts format (Wed Sep 13 2006 - 16:27:34 CDT)
- Re: antialiasing (Wed Sep 13 2006 - 14:07:44 CDT)
- Re: how to run a plugin from the command line? (Mon Sep 11 2006 - 23:34:01 CDT)
- Re: Graphics cards (Mon Sep 11 2006 - 11:34:32 CDT)
- Re: Labels not appearing with "load state" (Sun Sep 10 2006 - 01:36:13 CDT)
- Re: How to use bigdcd in vmd batch mode? (Fri Sep 08 2006 - 16:32:18 CDT)
- Re: Ramachandran Map of 2 pdbs (Fri Sep 08 2006 - 13:13:23 CDT)
- Re: Win64 version (Wed Sep 06 2006 - 15:10:46 CDT)
- Re: dynamical list of atoms (Wed Sep 06 2006 - 11:01:29 CDT)
- Re: different number of atoms in different frames of a trajectory (Mon Sep 04 2006 - 22:46:01 CDT)
- Re: qsub (torque/maui) and vmd (Mon Sep 04 2006 - 22:38:40 CDT)
- Re: looking for VMD draw scripts. (Fri Sep 01 2006 - 17:03:37 CDT)
- Re: looking for VMD draw scripts. (Fri Sep 01 2006 - 16:07:38 CDT)
- Re: Where did I put those angles? (Thu Aug 31 2006 - 17:57:18 CDT)
- Re: Dynamic bond calculation (Tue Aug 29 2006 - 14:27:46 CDT)
- Re: question about visualization (Tue Aug 29 2006 - 12:58:40 CDT)
- Re: VMD1.8.5 : multiseq db (Tue Aug 29 2006 - 12:55:03 CDT)
- Re: A error of " transforming dcd into pdb " (Tue Aug 29 2006 - 11:51:00 CDT)
- Re: Problem with vmdsphere.frag shader (Mon Aug 28 2006 - 11:58:37 CDT)
- Re: Problem with vmdsphere.frag shader (Mon Aug 28 2006 - 11:44:38 CDT)
- Re: GLSL failure in VMD 1.8.5, Nvidia 6200 card (Mon Aug 28 2006 - 11:37:48 CDT)
- Re: water numbering (Mon Aug 28 2006 - 11:33:18 CDT)
- Re: water numbering (Mon Aug 28 2006 - 11:28:06 CDT)
- Re: Re: autoionize behaviour on big systems (Mon Aug 28 2006 - 01:21:49 CDT)
- Re: autoionize behaviour on big systems (Mon Aug 28 2006 - 00:59:33 CDT)
- Announce: VMD 1.8.5 Released! (Fri Aug 25 2006 - 23:51:22 CDT)
- Re: problems with autoionize (Thu Aug 24 2006 - 21:52:35 CDT)
- Re: animated gif option in VMD for Windows. (Thu Aug 24 2006 - 15:00:01 CDT)
- Re: Unexpected End-of-file? (Thu Aug 24 2006 - 00:44:22 CDT)
- Re: spikes in trajectory, problem with the alignment of frames (Wed Aug 23 2006 - 22:27:52 CDT)
- Re: problems with autoionize (Tue Aug 22 2006 - 21:48:24 CDT)
- Re: problems with autoionize (Tue Aug 22 2006 - 20:56:03 CDT)
- Re: VMD and IED for Tiger? (Tue Aug 22 2006 - 20:17:45 CDT)
- Re: problems with autoionize (Tue Aug 22 2006 - 19:02:12 CDT)
- Re: problems with autoionize (Tue Aug 22 2006 - 17:45:34 CDT)
- Re: md trajectory: centering/h-bonb residence/coordination number (Mon Aug 21 2006 - 11:02:49 CDT)
- Re: changing the name of a residue (Mon Aug 21 2006 - 10:37:59 CDT)
- Re: large mdcrd files (Sun Aug 20 2006 - 14:09:50 CDT)
- Re: RealD (Stereographics) E2SGI emitter on Quadro 3450? (Fri Aug 18 2006 - 22:33:36 CDT)
- Re: load MSMS face file into VMD (Fri Aug 18 2006 - 16:24:55 CDT)
- Re: Fwd: Crystal eyes stereo on un supported Mac G5 GeForce FX5200 (Fri Aug 18 2006 - 11:42:34 CDT)
- Re: reading cmap wih vmd (Thu Aug 17 2006 - 23:43:50 CDT)
- Re: Load (Thu Aug 17 2006 - 14:04:21 CDT)
- Re: Manipulation on loaded MSMS surface (Wed Aug 16 2006 - 23:26:54 CDT)
- Re: Re: stereo enabler (Wed Aug 16 2006 - 16:21:44 CDT)
- Re: rendering transparent objects (Wed Aug 16 2006 - 15:43:57 CDT)
- Re: stereo on LCD display = pipe dream? (Wed Aug 16 2006 - 14:02:24 CDT)
- Re: minimum distance b/w two atoms (Tue Aug 15 2006 - 18:21:12 CDT)
- VMD 1.8.5 beta 7 test version posted (Sun Aug 13 2006 - 17:49:32 CDT)
- Re: color: negative values (Sat Aug 12 2006 - 14:50:14 CDT)
- Re: Installation of VMD on Mandriva Linux 2006 (Sat Aug 12 2006 - 13:34:42 CDT)
- Re: Installation of VMD on Mandriva Linux 2006 (Sat Aug 12 2006 - 10:40:12 CDT)
- Re: right alignment for numbers in color bar (Sat Aug 12 2006 - 03:42:53 CDT)
- Re: right alignment for numbers in color bar (Sat Aug 12 2006 - 00:15:58 CDT)
- Re: right alignment for numbers in color bar (Fri Aug 11 2006 - 23:15:27 CDT)
- Re: Axes dilema (Fri Aug 11 2006 - 22:27:58 CDT)
- favorite VMD material settings? (Fri Aug 11 2006 - 14:47:18 CDT)
- Re: Compiling VMD with full OpenGL (Thu Aug 10 2006 - 17:08:48 CDT)
- Re: test versions of VMD 1.8.5 -DLPOLY (Thu Aug 10 2006 - 11:51:38 CDT)
- Re: Compiling VMD with full OpenGL (Thu Aug 10 2006 - 11:09:35 CDT)
- Re: visualization code (Wed Aug 09 2006 - 22:45:06 CDT)
- Re: making movie from GROMACS trajectory (Wed Aug 09 2006 - 20:27:25 CDT)
- Re: Periodic builder? (Wed Aug 09 2006 - 13:36:16 CDT)
- Re: No stereo display support in Windows Vista... (Tue Aug 08 2006 - 11:26:07 CDT)
- Re: (Tue Aug 08 2006 - 11:08:08 CDT)
- Re: No stereo display support in Windows Vista... (Mon Aug 07 2006 - 23:38:02 CDT)
- No stereo display support in Windows Vista... (Mon Aug 07 2006 - 12:52:00 CDT)
- Re: loading trajectory file (Mon Aug 07 2006 - 11:46:34 CDT)
- Re: Cannot run IED! :( (Thu Aug 03 2006 - 11:30:01 CDT)
- Re: Cannot run IED! :( (Thu Aug 03 2006 - 10:40:15 CDT)
- Re: Cannot run IED! :( (Wed Aug 02 2006 - 21:53:55 CDT)
- 2006 VMD user survey in progress (Wed Aug 02 2006 - 18:05:13 CDT)
- Re: about maximum number of atoms (Wed Aug 02 2006 - 17:25:32 CDT)
- Re: about maximum number of atoms (Wed Aug 02 2006 - 16:53:53 CDT)
- Re: about maximum number of atoms (Wed Aug 02 2006 - 15:39:50 CDT)
- Re: rendering..... (Mon Jul 31 2006 - 17:39:15 CDT)
- Latest list of VMD citations (Wed Jul 26 2006 - 15:58:09 CDT)
- Re: AMBER9 netcdf trajectory loading (Wed Jul 26 2006 - 13:27:37 CDT)
- Re: DL_POLY output files (Tue Jul 25 2006 - 15:59:58 CDT)
- Re: Rendering surfaces from PLT files (Tue Jul 25 2006 - 12:41:53 CDT)
- Re: trajectory file format (Tue Jul 25 2006 - 12:39:40 CDT)
- Re: Unable to ionize a solvated structure using autoionization (Mon Jul 24 2006 - 11:59:11 CDT)
- Re: Rendering surfaces from PLT files (Mon Jul 24 2006 - 11:56:51 CDT)
- Re: Atomselection for negative values (Wed Jul 19 2006 - 17:03:14 CDT)
- Re: Reading Amber .crd files (Tue Jul 18 2006 - 12:38:26 CDT)
- Re: Reading Amber .prd and PARM files into VMD (Tue Jul 18 2006 - 12:37:27 CDT)
- Re: secondary structure assignment (Mon Jul 17 2006 - 16:01:54 CDT)
- Re: Anyone using ATI X1600? (Mon Jul 17 2006 - 11:17:25 CDT)
- Re: secondary structure assignment (Mon Jul 17 2006 - 10:40:43 CDT)
- Re: Selecting the "n" closest waters (Thu Jul 13 2006 - 16:53:32 CDT)
- Re: Selecting the "n" closest waters (Thu Jul 13 2006 - 15:58:49 CDT)
- Re: water selection (Thu Jul 13 2006 - 10:47:11 CDT)
- Re: water selection (Thu Jul 13 2006 - 10:46:37 CDT)
- Re: Anyone using ATI X1600? (Thu Jul 13 2006 - 10:42:38 CDT)
- Re: residue no. greater than 9999 in pdb files created with VMD (Wed Jul 12 2006 - 11:16:21 CDT)
- Re: Feature request: output to Blender 3D modelling software (Wed Jul 12 2006 - 00:07:45 CDT)
- Re: Feature request: output to Blender 3D modelling software (Tue Jul 11 2006 - 16:18:23 CDT)
- Re: Feature request: output to Blender 3D modelling software (Tue Jul 11 2006 - 11:06:43 CDT)
- Re: VMD selection options and local density maps (Fri Jul 07 2006 - 13:49:27 CDT)
- Re: Queries on making polymer (Fri Jul 07 2006 - 13:37:40 CDT)
- Re: residue list of within ? distance (Thu Jul 06 2006 - 16:52:59 CDT)
- Re: 3Dconnexion SpaceTraveler works (Thu Jul 06 2006 - 13:21:22 CDT)
- Re: how to prevent molecule jump around (Thu Jul 06 2006 - 13:19:08 CDT)
- Re: VMD as background job on multiprocessor machine doesn't work? (Thu Jul 06 2006 - 13:00:57 CDT)
- Re: xyz animation (Thu Jul 06 2006 - 12:56:46 CDT)
- Re: Renaming Molecule Names in existing .xyz trajectory files (Tue Jul 04 2006 - 23:11:56 CDT)
- Re: Trajectory Analysis (Tue Jul 04 2006 - 22:56:28 CDT)
- Re: debug (Tue Jul 04 2006 - 22:43:57 CDT)
- Re: Renaming Molecule Names in existing .xyz trajectory files (Tue Jul 04 2006 - 22:37:09 CDT)
- Re: VMD crashed due to: vmd_LINUXAMD64: indirect_vertex_array.c:659: emit_DrawArrays_old: Assertion `elements_per_request >= count' failed (Tue Jun 27 2006 - 17:15:03 CDT)
- Re: VMD performance bottlenecks (Tue Jun 27 2006 - 17:00:26 CDT)
- Re: coordinate translation (Tue Jun 27 2006 - 16:57:41 CDT)
- Re: Tcl commands on Mac (Mon Jun 26 2006 - 18:01:55 CDT)
- Re: water box... (Mon Jun 26 2006 - 17:32:45 CDT)
- Re: bonds forming during simulation (Mon Jun 26 2006 - 14:48:11 CDT)
- Re: GLSL Compile Error (VMD 1.8.4, Nvidia Driver 8762) (Mon Jun 26 2006 - 11:22:48 CDT)
- Re: a question about "measure fit" (Fri Jun 23 2006 - 11:13:26 CDT)
- Re: problem with measure command (Fri Jun 23 2006 - 11:09:00 CDT)
- Re: problem with measure command (Fri Jun 23 2006 - 10:34:03 CDT)
- Re: psfgen (Thu Jun 22 2006 - 15:45:15 CDT)
- Re: .vmdrc (Thu Jun 22 2006 - 15:17:31 CDT)
- Re: error using Namdenergy (Thu Jun 22 2006 - 15:06:12 CDT)
- Re: error message occurred in RMSD Trajectory Tool (Thu Jun 22 2006 - 14:36:46 CDT)
- Re: Is there any script to analyze radius gyration, center of mass of namd traj file dcd? (Thu Jun 22 2006 - 14:07:45 CDT)
- Re: error message occurred in RMSD Trajectory Tool (Thu Jun 22 2006 - 13:53:37 CDT)
- Re: the python library error in VMD when do IED (Thu Jun 22 2006 - 13:51:31 CDT)
- Re: align and superimpose crd structures. (Wed Jun 21 2006 - 17:03:38 CDT)
- Re: error Autoimd (Wed Jun 21 2006 - 14:24:27 CDT)
- Re: pdbalias not working (Wed Jun 21 2006 - 13:55:41 CDT)
- Re: align and superimpose crd structures. (Wed Jun 21 2006 - 13:34:48 CDT)
- Re: align and superimpose crd structures. (Wed Jun 21 2006 - 13:32:33 CDT)
- Re: Average Structure and RMSD (Wed Jun 21 2006 - 13:29:44 CDT)
- Re: (Wed Jun 21 2006 - 13:21:42 CDT)
- Re: Making a Movie (Tue Jun 20 2006 - 16:21:31 CDT)
- Re: RMSF ? (Tue Jun 20 2006 - 16:13:57 CDT)
- Re: the python library error in VMD when do IED (Mon Jun 19 2006 - 15:55:13 CDT)
- Re: Compiling problem (Mon Jun 19 2006 - 14:46:57 CDT)
- Re: VMD crashed due to: vmd_LINUXAMD64: indirect_vertex_array.c:659: emit_DrawArrays_old: Assertion `elements_per_request >= count' failed (Mon Jun 19 2006 - 14:43:06 CDT)
- Re: Compilation propblem (Mon Jun 19 2006 - 13:19:16 CDT)
- Re: error Autoimd (Thu Jun 15 2006 - 15:38:23 CDT)
- Re: user-defined movie (Wed Jun 14 2006 - 16:58:09 CDT)
- Re: how to change paramters in making movie (Wed Jun 14 2006 - 13:45:14 CDT)
- Re: python - writes frames to pdb files (Tue Jun 13 2006 - 15:51:24 CDT)
- Re: fading rep scripts (Tue Jun 13 2006 - 13:42:31 CDT)
- Re: fading rep scripts (Tue Jun 13 2006 - 13:28:10 CDT)
- Re: fading rep scripts (Tue Jun 13 2006 - 12:53:17 CDT)
- Re: missing" Number of frames to render" in VMD window movie generator (Tue Jun 13 2006 - 11:51:15 CDT)
- Re: (no subject) (Tue Jun 13 2006 - 11:47:30 CDT)
- Re: RMSD of not fitted region (Tue Jun 13 2006 - 11:17:07 CDT)
- Re: fading rep scripts (Tue Jun 13 2006 - 11:16:03 CDT)
- Re: fading rep scripts (Mon Jun 12 2006 - 17:43:59 CDT)
- Re: Segmentation fault when trying to load GROMACS trajectories (Mon Jun 12 2006 - 13:42:26 CDT)
- Re: membrane plugin (IRIX version) (Wed Jun 07 2006 - 14:42:43 CDT)
- Re: problem with installation (Wed Jun 07 2006 - 11:32:52 CDT)
- Re: Simple one-liner? (Wed Jun 07 2006 - 11:11:23 CDT)
- Re: problem with installation (Wed Jun 07 2006 - 11:02:06 CDT)
- Re: how to make movies from HISTORY file (Tue Jun 06 2006 - 13:20:32 CDT)
- Re: "tight" selection (Tue Jun 06 2006 - 13:14:42 CDT)
- Re: (Tue Jun 06 2006 - 12:59:57 CDT)
- Re: Incomplete Display (Mon Jun 05 2006 - 17:02:21 CDT)
- Re: Small molecules alignment with VMD (Mon Jun 05 2006 - 10:34:29 CDT)
- Re: vmd in fedora core 5 (Mon Jun 05 2006 - 10:32:15 CDT)
- Re: Incomplete Display (Mon Jun 05 2006 - 10:30:08 CDT)
- Re: Problems with APBS Compatibility (Fri Jun 02 2006 - 13:40:55 CDT)
- Re: How to show 3D images in the display window of VMD (Fri Jun 02 2006 - 12:27:14 CDT)
- Re: vmd 1.8.5 (Fri Jun 02 2006 - 12:24:19 CDT)
- Re: Global Command to load 200 pdb files, without using script files (Fri Jun 02 2006 - 11:52:30 CDT)
- Re: Problems with APBS Compatibility (Thu Jun 01 2006 - 18:01:15 CDT)
- Re: How to make bold font? (Thu Jun 01 2006 - 15:28:27 CDT)
- Re: simple plugin (Thu Jun 01 2006 - 14:02:50 CDT)
- Re: error. Autoimd (Thu Jun 01 2006 - 12:46:38 CDT)
- Re: file bigger than 2GB (Thu Jun 01 2006 - 12:44:28 CDT)
- Re: NewCartoon and mol2 files (Thu Jun 01 2006 - 12:36:29 CDT)
- Re: extended xyz (Wed May 31 2006 - 16:42:07 CDT)
- Re: extended xyz (Wed May 31 2006 - 16:38:03 CDT)
- Re: simple plugin (Wed May 31 2006 - 16:25:08 CDT)
- Re: NewCartoon and mol2 files (Wed May 31 2006 - 10:55:47 CDT)
- Re: AMD64 vmd installation problems (Wed May 31 2006 - 10:38:54 CDT)
- Re: how to save a structure after alignment? (Tue May 30 2006 - 17:32:24 CDT)
- Re: secondary structure assignment (Tue May 30 2006 - 17:01:24 CDT)
- Re: catDCD 4.0 and xplor (Tue May 30 2006 - 15:41:02 CDT)
- Re: PDB CONECT (Tue May 30 2006 - 15:37:41 CDT)
- Re: contact between 2 residues (Tue May 30 2006 - 14:27:24 CDT)
- Re: paratool ? (Fri May 26 2006 - 21:16:21 CDT)
- Re: vmd on opteron (Fri May 26 2006 - 15:12:12 CDT)
- Re: rmsf (Thu May 25 2006 - 14:54:21 CDT)
- Re: the crystal structure of gold: questions about making the psf and about visualization in VMD; (Thu May 25 2006 - 14:48:50 CDT)
- Re: Compilation (Thu May 25 2006 - 14:35:31 CDT)
- Re: Compilation (Thu May 25 2006 - 14:31:03 CDT)
- Re: Compilation (Thu May 25 2006 - 14:24:57 CDT)
- Re: something about simulation of small molecules in NAMD (Thu May 25 2006 - 14:20:40 CDT)
- Re: Fw: (ÈðÐÇÌáÊ¾-´ËÓÊ¼þ¿ÉÄÜÊÇÀ¬»øÓÊ¼þ)Re: vmd-lQ?= gamess plugin error when using symmetry operations (Thu May 25 2006 - 14:17:20 CDT)
- Re: change default drawing and coloring method (Wed May 24 2006 - 16:28:51 CDT)
- Re: xyz files into dcd trajectory (Wed May 24 2006 - 16:19:15 CDT)
- Re: xyz files into dcd trajectory (Wed May 24 2006 - 15:58:23 CDT)
- Re: Display the electrostatic character (delphimap) on the structure file (Wed May 24 2006 - 13:37:50 CDT)
- Re: data file extensions (Wed May 24 2006 - 13:04:16 CDT)
- Re: xyz files into dcd trajectory (Wed May 24 2006 - 13:00:34 CDT)
- Re: the crystal structure of gold: questions about making the psf and about visualization in VMD; update (Tue May 23 2006 - 14:56:30 CDT)
- Re: installation problem: InstallShield (Tue May 23 2006 - 14:39:44 CDT)
- Re: How to make bold font? (Tue May 23 2006 - 13:59:41 CDT)
- Re: change default drawing and coloring method (Tue May 23 2006 - 13:19:13 CDT)
- Re: Gaussian Cube file with VMD (Tue May 23 2006 - 13:14:29 CDT)
- Re: redhat linux vmd (Tue May 23 2006 - 13:09:02 CDT)
- Re: change default drawing and coloring method (Tue May 23 2006 - 13:05:51 CDT)
- Re: gamess plugin error when using symmetry operations (Tue May 23 2006 - 13:02:30 CDT)
- Re: How do I change details of a drawing style using the text interface? (Mon May 22 2006 - 17:52:31 CDT)
- Re: redhat linux vmd (Mon May 22 2006 - 16:19:39 CDT)
- Re: Stereo VMD on Mac G5 (Mon May 22 2006 - 16:13:42 CDT)
- Re: scrolling up in vmd console (Mon May 22 2006 - 15:18:01 CDT)
- Re: how to enable the vmd cachemode in .vmdrc? (Mon May 22 2006 - 15:15:57 CDT)
- Re: Solutions for stereo - is CRT technology dead? (Mon May 22 2006 - 10:54:02 CDT)
- Re: Axel RE: high resolution images (Fri May 19 2006 - 15:30:13 CDT)
- Re: reading DLPoly VMD 1.8.4 (Fri May 19 2006 - 15:28:44 CDT)
- Re: water molecules in residue interaction (Fri May 19 2006 - 11:50:07 CDT)
- Re: ati interlace mode (Fri May 19 2006 - 11:45:48 CDT)
- Re: ati interlace mode (Thu May 18 2006 - 18:32:03 CDT)
- Re: Plugin compilation problem (Thu May 18 2006 - 17:57:48 CDT)
- reporting various NVidia driver bugs... (Thu May 18 2006 - 16:14:43 CDT)
- Re: reading DLPoly VMD 1.8.4 (Thu May 18 2006 - 11:42:17 CDT)
- Re: bug in membrane plugin (Wed May 17 2006 - 13:59:01 CDT)
- Re: ati interlace mode (Wed May 17 2006 - 13:07:24 CDT)
- Re: Display the electrostatic character (delphimap) on the structure file (Tue May 16 2006 - 13:14:20 CDT)
- Re: How to make a disulphide bond (Tue May 16 2006 - 13:12:42 CDT)
- Re: Multiple data files on command line does not seem to work (Tue May 16 2006 - 10:58:05 CDT)
- Re: ati interlace mode (Tue May 16 2006 - 10:47:03 CDT)
- Re: wraping two chains from a simulation (Mon May 15 2006 - 12:39:30 CDT)
- Re: bug in membrane plugin (Mon May 15 2006 - 12:33:29 CDT)
- Re: Display the electrostatic character (delphimap) on the structure file (Mon May 15 2006 - 12:29:27 CDT)
- Re: Display the electrostatic character (delphimap) on the structure file (Mon May 15 2006 - 12:15:11 CDT)
- Re: Plugin compilation (Mon May 15 2006 - 12:13:49 CDT)
- Re: Gamepads and VMD (and MacOSX and ForceFeedback) (Mon May 15 2006 - 12:04:35 CDT)
- Re: ati interlace mode (Mon May 15 2006 - 12:01:50 CDT)
- Re: Display the electrostatic character (delphimap) on the structure file (Tue May 09 2006 - 09:25:09 CDT)
- Re: How to pick up the lost periodic information? (Tue May 09 2006 - 09:21:31 CDT)
- Re: How to pick up the lost periodic information? (Tue May 09 2006 - 09:16:59 CDT)
- Re: How to access the subset after 'fit' and 'move' ? (Mon May 08 2006 - 18:21:19 CDT)
- Re: How to pick up the lost periodic information? (Mon May 08 2006 - 15:40:30 CDT)
- Re: NAMD from command line args (Sat May 06 2006 - 21:25:47 CDT)
- New test version posted... (Fri May 05 2006 - 19:39:47 CDT)
- Re: writing charmm psf files (Fri May 05 2006 - 10:00:11 CDT)
- Re: writing charmm psf files (Fri May 05 2006 - 09:42:18 CDT)
- Re: povray problem: degenerate cylinder (Fri May 05 2006 - 09:38:02 CDT)
- Re: viewing heteroatoms? (Thu May 04 2006 - 20:15:36 CDT)
- Re: visualizing biological molecule? (Thu May 04 2006 - 19:56:50 CDT)
- Re: Re: Refreshing the screen (Thu May 04 2006 - 17:09:17 CDT)
- Re: script for multiple structure superimposition? (Thu May 04 2006 - 16:58:04 CDT)
- Re: Refreshing the screen (Thu May 04 2006 - 12:25:38 CDT)
- Re: visualizing biological molecule? (Thu May 04 2006 - 10:57:22 CDT)
- Re: dlpoly history files in vmd 1.8.4 (Thu May 04 2006 - 10:38:26 CDT)
- Re: dlpoly history files in vmd 1.8.4 (Thu May 04 2006 - 08:28:45 CDT)
- Re: selecting frames from trajectory (Wed May 03 2006 - 18:12:04 CDT)
- Re: Playing part of a trajectory using TCL (Wed May 03 2006 - 18:06:12 CDT)
- Re: selecting frames from trajectory (Wed May 03 2006 - 17:52:21 CDT)
- Re: dlpoly history files in vmd 1.8.4 (Wed May 03 2006 - 17:34:16 CDT)
- Re: Water and protein (Wed May 03 2006 - 14:16:50 CDT)
- Re: missing cell length on DCD (Wed May 03 2006 - 14:15:13 CDT)
- Re: Using RMSD without loading all structures? (Wed May 03 2006 - 12:38:43 CDT)
- Re: dlpoly history files in vmd 1.8.4 (Wed May 03 2006 - 10:24:15 CDT)
- Re: search path and naming conventions for custom TCL scripts (Wed May 03 2006 - 10:12:03 CDT)
- Re: cavity/pocket representation (Tue May 02 2006 - 13:05:12 CDT)
- Re: coordinates of an atom (Tue May 02 2006 - 11:22:37 CDT)
- Re: one residue rmsd (Tue May 02 2006 - 11:00:59 CDT)
- Re: ppmtompeg (Tue May 02 2006 - 10:48:16 CDT)
- Re: saving coordinates of expanded cell (Tue May 02 2006 - 10:44:20 CDT)
- Re: Compile of OpenGL shader vmdsphere failed (Tue May 02 2006 - 10:26:41 CDT)
- Re: coordinates of an atom (Tue May 02 2006 - 10:13:23 CDT)
- Re: OFF drawing method (Tue May 02 2006 - 10:07:49 CDT)
- Re: loading amber topology (Mon May 01 2006 - 14:10:18 CDT)
- Re: Re: Building VMD in Windows (Mon May 01 2006 - 10:17:19 CDT)
- Re: VMD with charmm program (Sun Apr 30 2006 - 09:24:22 CDT)
- Re: Problems with mouse programming in VMD (Sun Apr 30 2006 - 09:16:26 CDT)
- Re: Building VMD in Windows (Sun Apr 30 2006 - 09:11:01 CDT)
- Re: VMD on LINUX with CAVELib (Sun Apr 30 2006 - 00:32:53 CDT)
- Re: Problems with mouse programming in VMD (Sat Apr 29 2006 - 22:50:11 CDT)
- Re: Building VMD in Windows (Sat Apr 29 2006 - 22:48:09 CDT)
- Re: hiding and renaming of graphical objects (Fri Apr 28 2006 - 12:45:21 CDT)
- Re: OpenGL Programmable Shading not available. (Fri Apr 28 2006 - 10:11:21 CDT)
- Re: Problems with mouse programming in VMD (Thu Apr 27 2006 - 12:45:44 CDT)
- Re: Problems with mouse programming in VMD (Thu Apr 27 2006 - 11:52:55 CDT)
- Re: Secondary Structure along a trajectory (Thu Apr 27 2006 - 11:12:29 CDT)
- Re: Compiling problem (Wed Apr 26 2006 - 15:06:11 CDT)
- Re: fedora core 5 and VMD 1.8.4 (Tue Apr 25 2006 - 23:54:27 CDT)
- Re: fedora core 5 and VMD 1.8.4 (Tue Apr 25 2006 - 22:51:55 CDT)
- Re: fedora core 5 and VMD 1.8.4 (Tue Apr 25 2006 - 19:20:27 CDT)
- Re: truncated octahedron from AMBER (Tue Apr 25 2006 - 13:51:41 CDT)
- Re: Problem with wait (Tue Apr 25 2006 - 12:59:07 CDT)
- Re: questions for 1.8.4 (Tue Apr 25 2006 - 10:49:28 CDT)
- Re: Movie for Trajectory analysis (Tue Apr 25 2006 - 10:41:00 CDT)
- Re: Problem with VMD 1.8.4 on Mac OS X 10.4.6 PPC (Tue Apr 25 2006 - 10:29:38 CDT)
- Re: tcl question (Tue Apr 25 2006 - 10:15:55 CDT)
- Updated "Hull" source code for delaunay script... (Mon Apr 24 2006 - 20:11:50 CDT)
- Re: rendering high resolution images (Mon Apr 24 2006 - 16:30:38 CDT)
- Re: tcl logging and plugins (Mon Apr 24 2006 - 14:07:26 CDT)
- Re: core dump (Mon Apr 24 2006 - 03:45:08 CDT)
- Re: questions for 1.8.4 (Fri Apr 21 2006 - 14:52:32 CDT)
- Re: VMD's Python/Tcl - importing libraries (Fri Apr 21 2006 - 11:48:07 CDT)
- Python libs posted for VMD 1.8.4 users... (Wed Apr 19 2006 - 20:33:15 CDT)
- Re: contact map lig-pro (Wed Apr 19 2006 - 17:46:14 CDT)
- Announce: VMD 1.8.4 Released!! (Mon Apr 17 2006 - 11:37:34 CDT)
- Re: VMD-L: how to select water molecules between two residues in a trajectory. (Mon Apr 17 2006 - 11:33:19 CDT)
- Re: python math library (Sun Apr 16 2006 - 22:08:42 CDT)
- Re: vmd 1.8a21 (Sun Apr 16 2006 - 17:06:07 CDT)
- Re: breaking the DCD file (Sun Apr 16 2006 - 17:12:32 CDT)
- Re: vmd 1.8a21 (Sun Apr 16 2006 - 13:05:59 CDT)
- Re: MacBookPro and VMD version (Sun Apr 16 2006 - 02:14:50 CDT)
- Re: python math library (Sun Apr 16 2006 - 00:34:52 CDT)
- Re: VMD-L: how to select water molecules between two residues in a trajectory. (Sat Apr 15 2006 - 17:17:16 CDT)
- Re: python (Thu Apr 13 2006 - 23:01:06 CDT)
- Re: making movie with move on each frame... (Thu Apr 13 2006 - 10:00:51 CDT)
- Re: merging two pdbs??? (Thu Apr 13 2006 - 01:37:20 CDT)
- Re: Warning) Unusual bond between residues 25 and 26 (Thu Apr 13 2006 - 01:34:09 CDT)
- Re: Re: namd-l: error in membrane producing (Thu Apr 13 2006 - 01:21:39 CDT)
- Re: selection in different pcb images (Thu Apr 13 2006 - 00:09:46 CDT)
- Re: python math library (Wed Apr 12 2006 - 22:09:14 CDT)
- Re: python math library (Wed Apr 12 2006 - 21:25:37 CDT)
- Re: a question about ribbon representation (Wed Apr 12 2006 - 16:04:05 CDT)
- Re: (xterm: Command not found) error (Wed Apr 12 2006 - 14:29:07 CDT)
- Re: GLSL rendermode now OK on Linux with NVidia 8756 driver version (Tue Apr 11 2006 - 12:28:43 CDT)
- Re: need HELP with psf file (Mon Apr 10 2006 - 23:55:53 CDT)
- Re: water layers (Mon Apr 10 2006 - 11:35:44 CDT)
- Re: making movie with move on each frame... (Mon Apr 10 2006 - 11:33:37 CDT)
- Re: libcprts.so.6 not found by VMD on RedHat EL3 (ia64). (Mon Apr 10 2006 - 10:20:52 CDT)
- Re: RNA first residue (Thu Apr 06 2006 - 14:29:42 CDT)
- Re: dict command (Thu Apr 06 2006 - 09:55:36 CDT)
- Re: NAMD to Amber (Thu Apr 06 2006 - 09:49:39 CDT)
- Re: STL rendering (Thu Apr 06 2006 - 09:45:01 CDT)
- Re: how to plot waters h-bonded to a protein? (Thu Apr 06 2006 - 09:42:00 CDT)
- Re: download pdb files from PDB with vmd 1.8.4b10 (Thu Apr 06 2006 - 09:36:28 CDT)
- Re: Summing volumetric data within a sub-volume of a simulation cell (Thu Apr 06 2006 - 00:05:04 CDT)
- Re: SURF -rendering problem (Thu Apr 06 2006 - 00:01:55 CDT)
- Re: error during creat .psf file (Wed Apr 05 2006 - 23:14:27 CDT)
- Re: question about psfgen (Wed Apr 05 2006 - 22:57:32 CDT)
- Re: error during creat .psf file (Wed Apr 05 2006 - 21:47:21 CDT)
- Re: warning from psfgen: poorly guessed coordinates... (Wed Apr 05 2006 - 20:47:40 CDT)
- Re: python Numeric library problem (Wed Apr 05 2006 - 20:21:52 CDT)
- Re: membrane loading (Wed Apr 05 2006 - 17:36:06 CDT)
- Re: Re: graphic representation (Wed Apr 05 2006 - 15:30:37 CDT)
- Re: Re: graphic representation (Wed Apr 05 2006 - 15:14:26 CDT)
- Re: membrane loading (Wed Apr 05 2006 - 14:32:38 CDT)
- Re: graphic representation (Wed Apr 05 2006 - 13:33:31 CDT)
- Re: SURF -rendering problem (Wed Apr 05 2006 - 12:32:49 CDT)
- Re: graphic representation (Wed Apr 05 2006 - 12:29:09 CDT)
- Re: dict command (Wed Apr 05 2006 - 10:11:08 CDT)
- Re: box information (Tue Apr 04 2006 - 17:27:17 CDT)
- Re: ied on vmd (Tue Apr 04 2006 - 16:41:02 CDT)
- Re: python Numeric library problem (Tue Apr 04 2006 - 16:00:09 CDT)
- Re: alternative display mode of HBonds (Tue Apr 04 2006 - 14:46:46 CDT)
- Re: question on vmd installation (Tue Apr 04 2006 - 14:43:58 CDT)
- Re: MacBookPro and VMD version (Tue Apr 04 2006 - 14:23:50 CDT)
- Fix for SELinux breaking VMD on FC5 (Tue Apr 04 2006 - 11:28:38 CDT)
- latest beta nVidia driver for Windows looks good so far... (Mon Apr 03 2006 - 20:00:50 CDT)
- Re: question on vmd installation (Mon Apr 03 2006 - 11:18:45 CDT)
- Re: special instructions in psfgen for circular proteins? (Sun Apr 02 2006 - 20:14:28 CDT)
- Re: problem with vmd (Sun Apr 02 2006 - 20:11:42 CDT)
- Re: vmd visualization problems with circular proteins (Sun Apr 02 2006 - 18:13:06 CDT)
- Re: about viewing charge density (Sun Apr 02 2006 - 14:37:46 CDT)
- Re: how to show biological unit coordiates from PDB using VMD? (Fri Mar 31 2006 - 16:27:21 CST)
- Re: how to show biological unit coordiates from PDB using VMD? (Fri Mar 31 2006 - 16:15:14 CST)
- Re: Compiling problem (Fri Mar 31 2006 - 16:13:07 CST)
- Re: how to show biological unit coordiates from PDB using VMD? (Fri Mar 31 2006 - 15:52:08 CST)
- Re: script to change representaiton (Thu Mar 30 2006 - 17:55:05 CST)
- Re: script to change representaiton (Thu Mar 30 2006 - 17:24:24 CST)
- Re: problem with vmd (Wed Mar 29 2006 - 14:26:40 CST)
- Re: Stereo on MacG5 (single processor) for VMD, Chimera UCSF etc. (Wed Mar 29 2006 - 14:23:25 CST)
- Re: stereo on MacG5 with Nvidia GeForce FX 5200 (Wed Mar 29 2006 - 14:20:57 CST)
- Re: strange vdw representation behavior (Wed Mar 29 2006 - 14:18:50 CST)
- Re: stereo on MacG5 (Wed Mar 29 2006 - 12:48:05 CST)
- Re: labels (Wed Mar 29 2006 - 10:54:12 CST)
- Re: script for cutting box (Wed Mar 29 2006 - 10:24:32 CST)
- Re: Stereo on MacG5 (single processor) for VMD, Chimera UCSF etc. (Wed Mar 29 2006 - 10:19:06 CST)
- Re: problem with vmd (Wed Mar 29 2006 - 10:05:30 CST)
- Re: script for cutting box (Wed Mar 29 2006 - 09:48:05 CST)
- Re: problem with vmd (Tue Mar 28 2006 - 14:06:30 CST)
- Re: namd-l: Re: boubt about consistency of measures (Mon Mar 27 2006 - 21:37:55 CST)
- Re: Some errors (Mon Mar 27 2006 - 19:09:30 CST)
- Re: problem with viewing gromacs xtc files in vmd (Mon Mar 27 2006 - 10:12:51 CST)
- Re: boubt about consistency of measures (Mon Mar 27 2006 - 00:47:16 CST)
- Re: extracting values from a dx file (Mon Mar 27 2006 - 00:00:48 CST)
- Re: Possible error in aligning/computing RMSD of 2 molecules with three or two atoms (Sun Mar 26 2006 - 23:58:57 CST)
- Re: Possible error in aligning/computing RMSD of 2 molecules with three or two atoms (Thu Mar 23 2006 - 15:55:38 CST)
- Re: movie quality degradation (Thu Mar 23 2006 - 11:51:41 CST)
- Re: Big trr trajectory (Thu Mar 23 2006 - 10:28:14 CST)
- Re: force over selection (Thu Mar 23 2006 - 10:26:50 CST)
- Re: Analysis (Thu Mar 23 2006 - 10:12:01 CST)
- Re: find neighbour ligand-protein (Thu Mar 23 2006 - 08:57:52 CST)
- Re: autoionize "error procesing bonds" (Wed Mar 22 2006 - 16:58:16 CST)
- Re: distance tween two atoms (Wed Mar 22 2006 - 16:55:45 CST)
- Re: energy calculation in VMD (Wed Mar 22 2006 - 16:48:08 CST)
- Re: euler angles (Wed Mar 22 2006 - 13:30:55 CST)
- Re: Problem with differentiating atoms from different frames for dcd file (Wed Mar 22 2006 - 10:23:41 CST)
- Re: Something about loading LAMMPS trace file (Wed Mar 22 2006 - 01:55:19 CST)
- Re: about the psfgen of vmd (Tue Mar 21 2006 - 10:37:14 CST)
- Re: sausage nmr ensemble (Tue Mar 21 2006 - 10:34:01 CST)
- Re: pdb - generation (Tue Mar 21 2006 - 10:16:00 CST)
- Re: sausage nmr ensemble (Tue Mar 21 2006 - 09:50:08 CST)
- Re: VMD Command (Tue Mar 21 2006 - 01:17:36 CST)
- Re: error loading dcd file on Windows XP (Fri Mar 17 2006 - 16:28:17 CST)
- Re: Problem with gopython (Fri Mar 17 2006 - 11:17:33 CST)
- VMD 1.8.4b12 test version, Wiki / BioCoRE public area (Thu Mar 16 2006 - 16:44:57 CST)
- Re: error loading dcd file on Windows XP (Thu Mar 16 2006 - 15:30:43 CST)
- Re: changing the color of subset of representation (Wed Mar 15 2006 - 18:59:20 CST)
- Re: change default bond cutoff distance (Wed Mar 15 2006 - 18:35:02 CST)
- Re: large selection (Wed Mar 15 2006 - 10:13:58 CST)
- Re: changing the color of subset of representation (Wed Mar 15 2006 - 10:09:46 CST)
- Re: changing the color of subset of representation (Wed Mar 15 2006 - 10:05:55 CST)
- Re: large selection (Tue Mar 14 2006 - 18:05:29 CST)
- Re: changing the color of subset of representation (Tue Mar 14 2006 - 15:34:57 CST)
- Re: Strange GLSL rendering (Tue Mar 14 2006 - 10:20:11 CST)
- Re: changing the color of subset of representation (Tue Mar 14 2006 - 00:39:40 CST)
- Re: cartoon selection (Tue Mar 14 2006 - 00:27:38 CST)
- Re: change default bond cutoff distance (Tue Mar 14 2006 - 00:18:33 CST)
- Re: changing the color of subset of representation (Mon Mar 13 2006 - 11:41:19 CST)
- Re: contact map definition (Mon Mar 13 2006 - 11:34:02 CST)
- Re: changing colours isosurface (Mon Mar 13 2006 - 11:17:08 CST)
- Re: IMD with linux VMD client and IBM namd server (Mon Mar 13 2006 - 10:31:24 CST)
- Re: user field memory demand (Mon Mar 13 2006 - 10:24:21 CST)
- Re: Convert an ascii matrix to an image (Mon Mar 13 2006 - 10:18:17 CST)
- Re: VMD script (Mon Mar 13 2006 - 10:17:25 CST)
- Re: drawing a truncated octahedron (Fri Mar 10 2006 - 18:40:17 CST)
- Re: VMD script (Fri Mar 10 2006 - 13:47:47 CST)
- Re: electrostatic potential maps in vmd (Fri Mar 10 2006 - 11:24:47 CST)
- Re: is possible to remove the waterbox before running VMD (Thu Mar 09 2006 - 10:40:39 CST)
- Re: is possible to remove the waterbox before running VMD (Thu Mar 09 2006 - 10:39:27 CST)
- Re: a display problem (Thu Mar 09 2006 - 10:33:27 CST)
- Re: chain fails (Wed Mar 08 2006 - 16:24:21 CST)
- Re: nVidia Quadro FX1400 Stereo Clone Mode (Wed Mar 08 2006 - 13:35:48 CST)
- Re: About VMD compile in win32 (Wed Mar 08 2006 - 11:18:25 CST)
- Re: Analysis (Wed Mar 08 2006 - 10:55:49 CST)
- Re: Atom name label (Wed Mar 08 2006 - 09:42:02 CST)
- Re: energy minimization of a trajectory with vmd+namd (Wed Mar 08 2006 - 09:39:30 CST)
- Re: change default bond cutoff distance (Tue Mar 07 2006 - 10:55:23 CST)
- Re: pbc and vmd (Tue Mar 07 2006 - 10:05:19 CST)
- Re: pbc and vmd (Mon Mar 06 2006 - 19:20:18 CST)
- Re: manipulate DLPOLY HISTORY files (Mon Mar 06 2006 - 19:14:18 CST)
- Re: question about electrostatic potential maps (Wed Mar 01 2006 - 16:50:00 CST)
- Re: selection of atoms on INSIDE protein (Wed Mar 01 2006 - 16:44:04 CST)
- Re: (Wed Mar 01 2006 - 14:56:46 CST)
- Re: question about electrostatic potential maps (Wed Mar 01 2006 - 09:50:47 CST)
- Re: Q:selection of atoms on the surface of a molecule (Tue Feb 28 2006 - 17:35:00 CST)
- Re: Warning) Unusual bond between residues 25 and 26 (Mon Feb 27 2006 - 16:25:38 CST)
- Re: isplay script that displays a system in the original pbc cell (Mon Feb 27 2006 - 16:11:07 CST)
- Re: question about electrostatic potential maps (Mon Feb 27 2006 - 16:06:56 CST)
- Re: converting pdb to xtc (Mon Feb 27 2006 - 11:13:22 CST)
- Re: Atomselection problem (Fri Feb 24 2006 - 17:07:48 CST)
- Re: representation using COM (Fri Feb 24 2006 - 13:56:40 CST)
- Re: Mapping electronic potential to surface (Fri Feb 24 2006 - 13:08:51 CST)
- Re: loading a trajectory using bigdcd and job launched on a PBS server (Thu Feb 23 2006 - 16:31:10 CST)
- Re: isplay script that displays a system in the original pbc cell (Thu Feb 23 2006 - 13:50:49 CST)
- Re: render text in VMD with Tachyon (Thu Feb 23 2006 - 12:39:51 CST)
- Re: Mapping electronic potential to surface (Thu Feb 23 2006 - 11:48:47 CST)
- Re: Moving domains in VMD (Thu Feb 23 2006 - 11:46:13 CST)
- Re: load multiple CRD trajectories into a PDB file (Thu Feb 23 2006 - 11:42:24 CST)
- Re: very large pdb file (Thu Feb 23 2006 - 11:26:34 CST)
- Re: How to display a periodic image using TCL commands? (Wed Feb 22 2006 - 11:11:23 CST)
- VMD /w >2GB RAM on Windows XP, and Windows XP x64 64-bit version... (Wed Feb 22 2006 - 10:51:19 CST)
- Re: read_next_timestep(...) (Tue Feb 21 2006 - 09:53:55 CST)
- Re: Problem with Hg, H (Mon Feb 20 2006 - 18:41:22 CST)
- Re: catdcd.LINUX (Thu Feb 16 2006 - 14:17:03 CST)
- Re: How can i use the catdcd plugin with the VMD windows version? (Thu Feb 16 2006 - 13:42:30 CST)
- Re: problem with script to get RMSD (Thu Feb 16 2006 - 13:41:21 CST)
- Re: catdcd.LINUX (Thu Feb 16 2006 - 13:32:27 CST)
- Re: PDB Parser cannot interpret ^M ? (Wed Feb 15 2006 - 11:29:03 CST)
- Re: fortran bindings for molfile library (Wed Feb 15 2006 - 10:22:04 CST)
- Re: moving an atom in VMD (Tue Feb 14 2006 - 19:58:28 CST)
- Re: PSF tools in windows and long paths (Tue Feb 14 2006 - 16:11:54 CST)
- Re: Problem with VMD 'animate' command (Tue Feb 14 2006 - 10:32:20 CST)
- Re: water box (Sun Feb 12 2006 - 16:33:58 CST)
- Re: VMD Plugin update for Windows problem (Sun Feb 12 2006 - 16:21:09 CST)
- Re: Problem with VMD 'animate' command (Sun Feb 12 2006 - 16:02:36 CST)
- Re: VMD 1.8.4 beta 11 test version available (Fri Feb 10 2006 - 19:12:57 CST)
- Re: VMD 1.8.4 beta 11 test version available (Fri Feb 10 2006 - 17:50:44 CST)
- VMD 1.8.4 beta 11 test version available (Fri Feb 10 2006 - 17:20:47 CST)
- Re: VTK with VMD (Fri Feb 10 2006 - 13:52:53 CST)
- Re: AtomSel with object index (Python scripting) (Fri Feb 10 2006 - 13:26:44 CST)
- Re: batchmode use of "labels" functions? (Fri Feb 10 2006 - 12:50:40 CST)
- Re: vmd-1.8.4b10/Linux amd64 only libstdc++.so.6 dependancy (Fri Feb 10 2006 - 12:45:19 CST)
- Re: uncompress files in tcl script (Thu Feb 09 2006 - 15:18:24 CST)
- Re: vmd-1.8.4b10/Linux amd64 only libstdc++.so.6 dependancy (Thu Feb 09 2006 - 13:30:59 CST)
- Re: vmd-1.8.4b10/Linux amd64 only libstdc++.so.6 dependancy (Thu Feb 09 2006 - 11:08:19 CST)
- Re: vmd-1.8.4b10/Linux amd64 only libstdc++.so.6 dependancy (Thu Feb 09 2006 - 09:38:08 CST)
- Re: Moving molecules with Spaceball or with a Tool (Wed Feb 08 2006 - 18:06:43 CST)
- Re: OpenGL Shading Program is not available (Wed Feb 08 2006 - 18:04:21 CST)
- Re: vmd-1.8.4b10/Linux amd64 only libstdc++.so.6 dependancy (Wed Feb 08 2006 - 17:48:25 CST)
- Re: Tcl scripting (Wed Feb 08 2006 - 17:34:53 CST)
- Re: trajectory2 (Mon Feb 06 2006 - 18:08:01 CST)
- Re: trajectory (Mon Feb 06 2006 - 12:44:13 CST)
- Looking for x86 Mac testers... (Fri Feb 03 2006 - 19:55:57 CST)
- Re: vmdtext on Mac OS X (Fri Feb 03 2006 - 17:19:37 CST)
- Re: compose pdb (Fri Feb 03 2006 - 12:42:49 CST)
- Re: installing problem python 2.2.2 for ied on amd64 (Thu Feb 02 2006 - 17:51:13 CST)
- Re: vmdtext on Mac OS X (Thu Feb 02 2006 - 17:34:43 CST)
- Re: Problems with Spaceball 4000FLX (Thu Feb 02 2006 - 17:31:45 CST)
- Re: external ??? (Thu Feb 02 2006 - 10:06:02 CST)
- Re: stereo with vmd (Wed Feb 01 2006 - 17:06:00 CST)
- Re: a question about dcd files (Wed Feb 01 2006 - 14:29:15 CST)
- Re: vmd installation on the server (Tue Jan 31 2006 - 13:41:55 CST)
- Re: printing to a file from a procedure to get RMSD (Tue Jan 31 2006 - 10:43:23 CST)
- Re: ntdll.dll problem when changing drawing methods (Mon Jan 30 2006 - 16:32:10 CST)
- Re: timeline - write canvas to ps (Mon Jan 30 2006 - 16:28:10 CST)
- Re: opendx and vmd (Mon Jan 30 2006 - 14:43:39 CST)
- Re: grid (Mon Jan 30 2006 - 10:15:29 CST)
- Re: vmd installation on the server (Mon Jan 30 2006 - 10:08:37 CST)
- Re: installing vmd on IBM AIX 5 (Fri Jan 27 2006 - 16:30:02 CST)
- Re: installing vmd on IBM AIX 5 (Fri Jan 27 2006 - 16:25:29 CST)
- Re: installing vmd on IBM AIX 5 (Fri Jan 27 2006 - 16:13:55 CST)
- Re: installing vmd on IBM AIX 5 (Fri Jan 27 2006 - 15:58:53 CST)
- Re: Can't load a large dcd? (Fri Jan 27 2006 - 15:28:31 CST)
- Re: An APBS problem (Fri Jan 27 2006 - 13:56:03 CST)
- Re: web script (Fri Jan 27 2006 - 12:59:44 CST)
- Re: Question: Cannot input hostname (LINUXAMD64.opengl) (Thu Jan 26 2006 - 14:24:30 CST)
- Re: distances on a isosurface plot (Thu Jan 26 2006 - 14:21:37 CST)
- Re: Changing Graphical Representations (Thu Jan 26 2006 - 14:03:29 CST)
- Re: vmd plugins / external programs (Thu Jan 26 2006 - 13:54:06 CST)
- Re: IED-plugin (Thu Jan 26 2006 - 12:45:52 CST)
- Re: Can't load a large dcd? (Thu Jan 26 2006 - 10:41:41 CST)
- Re: Can't load a large dcd? (Wed Jan 25 2006 - 10:23:36 CST)
- Re: Generating more than 100,000 water molecules (Tue Jan 24 2006 - 15:26:18 CST)
- Re: vmdmovie (ppmtompeg) doesn't work (Tue Jan 24 2006 - 12:50:56 CST)
- Re: pytjhon (Tue Jan 24 2006 - 11:25:06 CST)
- Re: problem with APBS pqr generation... (Tue Jan 24 2006 - 11:21:16 CST)
- Re: error loading pdb files (Tue Jan 24 2006 - 11:13:39 CST)
- Re: Adding New Color Definitions to Color Form (Tue Jan 24 2006 - 10:11:21 CST)
- Re: error loading pdb files (Tue Jan 24 2006 - 10:09:12 CST)
- Re: large DCD file "appears to contain no timesteps" (Mon Jan 23 2006 - 13:28:49 CST)
- Re: 64 bit NAMD on AIX and CatDCD (Mon Jan 23 2006 - 13:21:14 CST)
- Re: rod-like shapes (Fri Jan 20 2006 - 17:05:26 CST)
- Re: measure hbonds question (Fri Jan 20 2006 - 16:43:20 CST)
- Re: measure hbonds question (Fri Jan 20 2006 - 15:31:28 CST)
- Re: measure hbonds question (Fri Jan 20 2006 - 15:02:37 CST)
- Re: creating periodic images of an atom (Fri Jan 20 2006 - 14:39:57 CST)
- Re: X-PLOR EDM files (from AMBER) (Fri Jan 20 2006 - 14:27:39 CST)
- Re: loading X-PLOR grids created with ptraj (Fri Jan 20 2006 - 10:05:01 CST)
- Re: generating a huge number of water molecules (Thu Jan 19 2006 - 14:40:22 CST)
- Re: creating periodic images of an atom (Wed Jan 18 2006 - 17:08:27 CST)
- Re: Secondary Structure Stays at the last frame (Wed Jan 18 2006 - 16:04:52 CST)
- Re: opengl not found (Tue Jan 17 2006 - 10:49:40 CST)
- Re: get values from openDx grid format (Tue Jan 17 2006 - 10:46:10 CST)
- Re: [vmd] max number of molecules on mac (Tue Jan 17 2006 - 10:06:26 CST)
- Re: maximum number of molecules (Fri Jan 13 2006 - 13:36:39 CST)
- Re: mpeg1 movie output makes 0Kb file - any one know why? (Thu Jan 12 2006 - 10:58:22 CST)
- Re: mpeg1 movie output makes 0Kb file - any one know why? (Thu Jan 12 2006 - 10:57:11 CST)
- Re: secondary structure's display - problem (Thu Jan 12 2006 - 10:12:47 CST)
- Re: script no reading correct number of frames (Thu Jan 12 2006 - 10:07:41 CST)
- Re: mpeg1 movie output makes 0Kb file - any one know why? (Thu Jan 12 2006 - 09:57:17 CST)
- Re: Re: breaking a big dcd file (Wed Jan 11 2006 - 16:23:26 CST)
- Re: How to display text on helices ? (Wed Jan 11 2006 - 12:58:00 CST)
- Re: secondary structure's display - problem (Wed Jan 11 2006 - 09:58:28 CST)
- Re: High CPU usage with vmd-1.8.4b6 (99.9 %CPU ...) while using the FPS indicator (Tue Jan 10 2006 - 09:54:52 CST)
- Re: problem with generating movie from pdb files (Mon Jan 09 2006 - 17:08:46 CST)
- Re: how to use APBS (Mon Jan 09 2006 - 16:38:24 CST)
- Re: How to display text on helices ? (Mon Jan 09 2006 - 11:50:38 CST)
- Re: RMSF value of a group of atoms (Mon Jan 09 2006 - 11:34:46 CST)
- Re: problem in using "Automatic PSF Builder" (Mon Jan 09 2006 - 11:17:12 CST)
- Re: question about script for drawing dipole moment for helix (Mon Jan 09 2006 - 11:08:54 CST)
- VMD 1.8.4 beta 7 posted for testers... (Wed Jan 04 2006 - 19:19:35 CST)
- Re: Help on MD animation with VMD (Wed Jan 04 2006 - 18:24:15 CST)
- Re: CMAP problem (Tue Jan 03 2006 - 14:05:32 CST)
- Re: installation problem on solaris 9 (Tue Jan 03 2006 - 10:31:44 CST)
- Re: installing IED on vmd on windows (Tue Jan 03 2006 - 10:25:13 CST)
- Re: pdb structure off the web (Tue Jan 03 2006 - 10:06:25 CST)
- Re: problem in using "Automatic PSF Builder" (Wed Dec 28 2005 - 14:42:36 CST)
- Re: Loading a pdb traj in VMD 1.8.4 beta 6 (Wed Dec 28 2005 - 14:38:11 CST)
- Re: Charmm expanded coordinate file format? (Mon Dec 26 2005 - 12:02:31 CST)
- Re: VMD 1.8.4 beta 6 posted on the web... (Mon Dec 26 2005 - 11:59:43 CST)
- Re: how to use APBS (Thu Dec 22 2005 - 16:49:37 CST)
- VMD 1.8.4 beta 6 posted on the web... (Thu Dec 22 2005 - 16:46:43 CST)
- Re: ati radeon 9200 (Thu Dec 22 2005 - 10:18:17 CST)
- Re: FYI: vmd & vrpn v7.0b5 (Wed Dec 21 2005 - 09:57:26 CST)
- Re: breaking a big dcd file (Tue Dec 20 2005 - 16:28:31 CST)
- Re: Video card compatibility (Tue Dec 20 2005 - 14:54:02 CST)
- Re: vmd and xmgrace (Mon Dec 19 2005 - 17:24:32 CST)
- Re: Calculation of RMSF (Mon Dec 19 2005 - 17:21:51 CST)
- Re: vmd and xmgrace (Mon Dec 19 2005 - 17:13:10 CST)
- Re: Error in running VMD on AMD64-bit machine (Fedora Core 4) (Mon Dec 19 2005 - 16:54:21 CST)
- Re: how to measure the distance between centroids (Mon Dec 19 2005 - 16:51:29 CST)
- Re: message in the console (Mon Dec 19 2005 - 11:47:36 CST)
- Re: question about "then: then/endif not found" in the start VMD. (Fri Dec 16 2005 - 13:17:28 CST)
- Re: vmd-xplor and noe call (Thu Dec 15 2005 - 09:51:52 CST)
- Re: Calculation of RMSF (Wed Dec 14 2005 - 18:45:30 CST)
- Re: RMSD problem on 1.8.4a22 (Linux OpenGL) (Wed Dec 14 2005 - 12:48:00 CST)
- Re: extract euler angles from transformation matrix? (Wed Dec 14 2005 - 10:11:34 CST)
- Re: VMD 1.8.4 hangs on AMD64 (Tue Dec 13 2005 - 13:28:18 CST)
- Re: Re: compilation from source: make error message (Mon Dec 12 2005 - 15:36:49 CST)
- Re: lags on VDW (Mon Dec 12 2005 - 10:44:09 CST)
- Re: compilation from source: make error message (Mon Dec 12 2005 - 10:02:59 CST)
- Re: babel compilation error (Fri Dec 09 2005 - 12:59:39 CST)
- Re: coloring trajectory depending on coordination number (Fri Dec 09 2005 - 10:57:18 CST)
- Re: babel compilation error (Fri Dec 09 2005 - 10:10:20 CST)
- Re: spaceballs, etc. (Fri Dec 09 2005 - 09:54:11 CST)
- Re: animate error handling (Fri Dec 09 2005 - 09:50:32 CST)
- Re: fedora core 4 install problem (Fri Dec 09 2005 - 09:49:22 CST)
- Re: compilation from source: first attempt failed (Fri Dec 09 2005 - 09:46:08 CST)
- Re: Quite confused with Movie Maker (Thu Dec 08 2005 - 18:17:02 CST)
- Re: calling scripts from the command line (Thu Dec 08 2005 - 18:12:26 CST)
- Re: Two questions: MacOS X and Raster3D output (Thu Dec 08 2005 - 16:45:16 CST)
- Re: spaceballs, etc. (Thu Dec 08 2005 - 16:39:36 CST)
- Re: s-s bond in vmd not visualized (Thu Dec 08 2005 - 16:36:29 CST)
- Re: sorry John .. I found them (Thu Dec 08 2005 - 15:16:30 CST)
- Re: plugin source tree (Thu Dec 08 2005 - 15:15:35 CST)
- Re: babel compilation error (Thu Dec 08 2005 - 14:30:13 CST)
- Re: PBC and H-bond detection (Thu Dec 08 2005 - 13:40:13 CST)
- Re: APBS plugin (Thu Dec 08 2005 - 11:16:19 CST)
- Re: APBS plugin (Thu Dec 08 2005 - 10:14:01 CST)
- Re: APBS plugin (Wed Dec 07 2005 - 17:08:21 CST)
- Re: Clipping plane tool and export (Wed Dec 07 2005 - 13:17:20 CST)
- Re: Problem in linking (with TCL included in webpdbplugin.c) (Wed Dec 07 2005 - 10:47:51 CST)
- Re: colorid (Wed Dec 07 2005 - 10:17:58 CST)
- Re: Protein volume and cavityes (Wed Dec 07 2005 - 10:05:27 CST)
- Re: compiling vmd from source--will that solve ied issue? (Wed Dec 07 2005 - 10:01:13 CST)
- Re: Delphi binary phi map problem (Tue Dec 06 2005 - 17:08:10 CST)
- Re: coloring method (Tue Dec 06 2005 - 16:40:15 CST)
- Re: H-Bonds (Tue Dec 06 2005 - 16:34:22 CST)
- Re: MSMS problem (Tue Dec 06 2005 - 16:18:31 CST)
- Re: Delphi binary phi map problem (Mon Dec 05 2005 - 16:22:46 CST)
- Re: Installation problem. (Mon Dec 05 2005 - 14:07:23 CST)
- Re: Fwd: Re: VMD installation on Mac (Mon Dec 05 2005 - 14:02:54 CST)
- Re: MSMS problem (Mon Dec 05 2005 - 13:56:07 CST)
- Re: s-s bond in vmd not visualized (Fri Dec 02 2005 - 13:07:24 CST)
- Re: Bad performance of VMD (Fri Dec 02 2005 - 13:03:20 CST)
- Re: Delphi binary phi map problem (Thu Dec 01 2005 - 17:26:20 CST)
- Re: vmd-1.83's crash upon pdb load (Thu Dec 01 2005 - 15:45:26 CST)
- Re: How to efficiently update a surface (Thu Dec 01 2005 - 15:06:44 CST)
- Re: superposition of molecules (Thu Dec 01 2005 - 15:05:17 CST)
- Re: macros and variables (Thu Dec 01 2005 - 14:34:46 CST)
- Re: Tachyon rendering (Thu Dec 01 2005 - 10:01:03 CST)
- Re: visualizing charmm trajectories? (Wed Nov 30 2005 - 17:44:05 CST)
- Re: MSMS of selection's contribution to total surface (Wed Nov 30 2005 - 10:15:45 CST)
- Re: s-s bond in vmd not visualized (Mon Nov 28 2005 - 11:21:49 CST)
- Re: Bad performance of VMD (Mon Nov 28 2005 - 11:16:13 CST)
- Re: VMD input devices for USB-only Macs ? (Tue Nov 22 2005 - 13:22:58 CST)
- Re: Loading files all at once time to create movie (Mon Nov 21 2005 - 14:59:51 CST)
- Re: STRIDE error (Fri Nov 18 2005 - 13:52:17 CST)
- Re: Use VMD Graphics Primitives to Construct Stilized Cyclodextrins (Fri Nov 18 2005 - 11:06:36 CST)
- Re: STRIDE doesnt recognize unusual protein residue (Fri Nov 18 2005 - 09:59:16 CST)
- Re: visualizing charge density in vmd (Thu Nov 17 2005 - 15:06:18 CST)
- Re: STRIDE doesnt recognize unusual protein residue (Wed Nov 16 2005 - 15:39:11 CST)
- Re: Appending to DCD file with "animate write" (Wed Nov 16 2005 - 15:01:02 CST)
- Re: Problem with Dell Workstation (Tue Nov 15 2005 - 17:51:36 CST)
- Re: illegal mouse mode (Tue Nov 15 2005 - 11:24:07 CST)
- Re: convert PDB file to CRD? (Mon Nov 14 2005 - 11:47:48 CST)
- Re: Error, Tk option requires Tcl (Fri Nov 11 2005 - 13:55:05 CST)
- Re: L/R lighting discrepancy (Thu Nov 10 2005 - 09:52:34 CST)
- Re: L/R lighting discrepancy (Wed Nov 09 2005 - 11:32:57 CST)
- Re: L/R lighting discrepancy (Wed Nov 09 2005 - 10:36:41 CST)
- Re: error when solvating protein/vmd1.8.4a22 (Tue Nov 08 2005 - 15:24:57 CST)
- Re: increase size membrane (Tue Nov 08 2005 - 15:13:33 CST)
- Re: mol files (Tue Nov 08 2005 - 14:35:16 CST)
- Re: L/R lighting discrepancy (Tue Nov 08 2005 - 14:08:01 CST)
- Re: L/R lighting discrepancy (Tue Nov 08 2005 - 10:55:57 CST)
- Re: Problems with Terminal and 1.8.4.a22 under OSX (Tiger 10.4.3) (Tue Nov 08 2005 - 10:04:01 CST)
- Re: error when solvating protein/vmd1.8.4a22 (Tue Nov 08 2005 - 10:00:58 CST)
- Re: graphics card (Tue Nov 08 2005 - 09:56:57 CST)
- Re: explicit secondary structure (Tue Nov 08 2005 - 09:55:11 CST)
- Re: visualizing CCP4 maps in VMD (Mon Nov 07 2005 - 15:22:40 CST)
- Re: indexing water molecules (Thu Nov 03 2005 - 16:43:59 CST)
- Re: intermediate states of a morph (Wed Nov 02 2005 - 14:17:44 CST)
- Re: add a new file to vmd1.8.3 on linux(FC4) (Tue Nov 01 2005 - 15:09:30 CST)
- Re: How to change the colour of isosurface (Mon Oct 31 2005 - 17:29:09 CST)
- Re: changing the default representation for the sequence viewer (Mon Oct 31 2005 - 16:25:10 CST)
- Re: gamess plugin error of vmd 1.8.4a22 on windows (Fri Oct 28 2005 - 12:04:37 CDT)
- Re: structural alignment (Fri Oct 28 2005 - 10:43:27 CDT)
- Re: add a new file type to VMD on linux(FC4) (Fri Oct 28 2005 - 10:24:32 CDT)
- Re: add a new file type to VMD on linux(FC4) (Fri Oct 28 2005 - 09:55:51 CDT)
- Re: tcl/python and readline not working (Fri Oct 28 2005 - 09:45:49 CDT)
- Re: MacOS 10.4 problems (Fri Oct 28 2005 - 09:43:13 CDT)
- Re: Does Vmd support GUI and rendering separate (Thu Oct 27 2005 - 13:43:42 CDT)
- Re: writepsf error... (Thu Oct 27 2005 - 13:15:39 CDT)
- Re: Réf. : Re: Réf. : Re: visualization of DX map (Thu Oct 27 2005 - 11:27:13 CDT)
- Re: RéfQ?= : Re: visualization of DX map (Wed Oct 26 2005 - 17:37:51 CDT)
- Re: core API? (Wed Oct 26 2005 - 14:28:43 CDT)
- Re: Helix display (Wed Oct 26 2005 - 13:13:31 CDT)
- Re: Helix display (Wed Oct 26 2005 - 10:04:26 CDT)
- Re: Does Vmd support GUI and rendering separate (Tue Oct 25 2005 - 15:09:00 CDT)
- Re: solid color clipping plane - render with "scratches" (Tue Oct 25 2005 - 14:08:51 CDT)
- Re: The usual problem with IED (Mon Oct 24 2005 - 17:30:48 CDT)
- Re: How to get a membran.psf from membrane.pdb? (Mon Oct 24 2005 - 17:23:55 CDT)
- Re: Creating bond between two atoms (Mon Oct 24 2005 - 17:20:52 CDT)
- Re: trouble with autopsf (Mon Oct 24 2005 - 17:19:33 CDT)
- Re: VMD display size and position (Mon Oct 24 2005 - 17:08:36 CDT)
- Re: nvidia drivers and 64bit OS VMD/PYMOL (Mon Oct 24 2005 - 13:18:36 CDT)
- Re: visualization of DX map (Mon Oct 24 2005 - 13:15:07 CDT)
- Re: trouble with autopsf (Mon Oct 24 2005 - 13:11:39 CDT)
- Re: problem with writepdb (Mon Oct 24 2005 - 13:10:24 CDT)
- Re: vmd@ks.uiuc.edu,johns@ks.uiuc.edu (Fri Oct 21 2005 - 14:26:27 CDT)
- Re: Creating bond between two atoms (Fri Oct 21 2005 - 12:32:44 CDT)
- Re: Loading multiple molecules in one step / "Apply changes automatically" (Fri Oct 21 2005 - 10:32:20 CDT)
- Re: Loading multiple molecules in one step / "Apply changes automatically" (Fri Oct 21 2005 - 10:28:00 CDT)
- Re: vmd crashes on startup (Fri Oct 21 2005 - 09:59:05 CDT)
- Re: Reference to SASA calculation in VMD (Thu Oct 20 2005 - 15:20:13 CDT)
- Re: Starting v1.8.4a20 vs. v1.8.2a22 (Thu Oct 20 2005 - 15:10:10 CDT)
- VMD testers for ATI+Linux automatic driver workaround... (Thu Oct 20 2005 - 14:56:41 CDT)
- Re: Joystick, VMD and vrpn on Linux (Thu Oct 20 2005 - 14:25:17 CDT)
- Re: Starting v1.8.4a20 vs. v1.8.2a22 (Thu Oct 20 2005 - 14:14:56 CDT)
- Re: vmd crashes on startup (Thu Oct 20 2005 - 13:43:01 CDT)
- Re: vmd crashes on startup (Thu Oct 20 2005 - 13:37:24 CDT)
- Re: vmd crashes on startup (Thu Oct 20 2005 - 12:56:38 CDT)
- Re: can VMD show artificial bond info? (Wed Oct 19 2005 - 18:52:46 CDT)
- Re: Measuring distance during a trajectory (Wed Oct 19 2005 - 16:55:17 CDT)
- Re: new macs out (Wed Oct 19 2005 - 15:36:58 CDT)
- Re: dots per inch? (Wed Oct 19 2005 - 14:56:23 CDT)
- Re: Classroom Stereo projection (Wed Oct 19 2005 - 11:08:29 CDT)
- Re: vmd crashes on startup (Wed Oct 19 2005 - 09:35:08 CDT)
- Re: IED problem update: IED works only with vmd 1.8.2 (Mon Oct 17 2005 - 17:27:23 CDT)
- Re: Classroom Stereo projection (Mon Oct 17 2005 - 17:24:01 CDT)
- Re: The usual problem with IED (Mon Oct 17 2005 - 17:13:35 CDT)
- Re: rdf.tcl one more time (Mon Oct 17 2005 - 17:20:20 CDT)
- Re: Cannot load Gromos96 trajectory file (attached) (Mon Oct 17 2005 - 17:11:32 CDT)
- Re: Re: gamess plugin error of vmd 1.8.4a22 on windows (Mon Oct 17 2005 - 15:03:37 CDT)
- Test version of 1.8.4 posted for Situs users and others... (Fri Oct 14 2005 - 16:15:43 CDT)
- Re: clipplane (Fri Oct 14 2005 - 15:58:31 CDT)
- Re: Interpolation in internal space (Fri Oct 14 2005 - 15:55:29 CDT)
- Re: What's wrong with my VMD (Fri Oct 14 2005 - 15:51:06 CDT)
- Re: Classroom Stereo projection (Fri Oct 14 2005 - 15:45:29 CDT)
- Re: matrix transforms of volume objects (Fri Oct 14 2005 - 15:36:51 CDT)
- Re: RDF.tcl (Fri Oct 14 2005 - 15:18:53 CDT)
- Re: vmd & python (Fri Oct 14 2005 - 14:50:24 CDT)
- Re: (Fri Oct 14 2005 - 14:46:53 CDT)
- Re: TCL: centering molecule into middle of display after translation (Wed Oct 12 2005 - 17:54:13 CDT)
- Re: vmd-xplor (Wed Oct 12 2005 - 17:08:14 CDT)
- Re: Can vmd do symmetry operation? (Wed Oct 12 2005 - 17:03:56 CDT)
- Re: Show a movie from one static structure to another in VMD? (Wed Oct 12 2005 - 17:01:22 CDT)
- Re: puzzling writepdb error (Wed Oct 12 2005 - 16:58:24 CDT)
- Re: rendering problems (Tue Oct 11 2005 - 20:12:57 CDT)
- Re: How can I compile win32-vmd (Tue Oct 11 2005 - 17:03:21 CDT)
- Re: dynamically changing label... (Mon Oct 10 2005 - 16:15:02 CDT)
- Re: dynamically changing label... (Mon Oct 10 2005 - 14:54:18 CDT)
- Re: large output XYZ file > 2 Gio? (Re: [biosimgrid-team] Re: DCD to XYZ conversion) (Mon Oct 10 2005 - 14:53:09 CDT)
- Re: overlapping two structures (Mon Oct 10 2005 - 10:52:00 CDT)
- Re: how can I combine several selection into one selection by TCL (Mon Oct 10 2005 - 10:38:37 CDT)
- Re: getting centre of mass of contacts (Mon Oct 10 2005 - 10:30:20 CDT)
- Re: using scrpt making movies in Windows (Mon Oct 10 2005 - 10:10:58 CDT)
- Re: Hello! (Mon Oct 10 2005 - 10:08:13 CDT)
- Re: changing cpk shere scale in TCL (Wed Oct 05 2005 - 14:47:45 CDT)
- Re: VMD removing slightly misplaced atoms (Tue Oct 04 2005 - 14:27:18 CDT)
- Re: centering the molecule (Mon Oct 03 2005 - 16:32:10 CDT)
- Re: Potential map display in VMD (GRASP) (Mon Oct 03 2005 - 13:57:10 CDT)
- Re: fancy representations for lipids? (Mon Oct 03 2005 - 11:45:35 CDT)
- Re: Changing the title in the viewer window (Mon Oct 03 2005 - 11:43:03 CDT)
- Re: How can I compile win32-vmd (Mon Oct 03 2005 - 11:15:01 CDT)
- Re: Export problem Licorice to STL (Mon Oct 03 2005 - 11:13:07 CDT)
- Re: Display alternative atom locations using vmd (Thu Sep 29 2005 - 14:03:29 CDT)
- Re: about gamess plugin (Thu Sep 29 2005 - 10:59:51 CDT)
- Re: ???UNSURE??? Re: vmd that works with ati/linux (Thu Sep 29 2005 - 00:24:22 CDT)
- Re: Clip (Thu Sep 29 2005 - 00:22:12 CDT)
- Re: Potential map display in VMD (GRASP) (Thu Sep 29 2005 - 00:19:00 CDT)
- Re: vmd that works with ati/linux (Tue Sep 27 2005 - 21:18:03 CDT)
- Re: ptraj (Tue Sep 27 2005 - 09:57:34 CDT)
- Re: your mail (Tue Sep 27 2005 - 09:51:37 CDT)
- Re: Ployhedra in VMD (Mon Sep 26 2005 - 18:20:28 CDT)
- Re: Hello! (Mon Sep 26 2005 - 11:56:43 CDT)
- Re: position of protein respect to membrane (Mon Sep 26 2005 - 10:26:59 CDT)
- Re: Can VMD add other solvent except water in system? (Mon Sep 26 2005 - 10:12:51 CDT)
- Re: Problem building vmd 1.8.3 and destroyed usable 1.8.2 version (Mon Sep 26 2005 - 10:09:15 CDT)
- Re: gopython (Sat Sep 24 2005 - 22:36:07 CDT)
- Re: gopython (Sat Sep 24 2005 - 00:00:33 CDT)
- Re: tachyon rendering and background color (Fri Sep 23 2005 - 17:03:03 CDT)
- Re: vmd crashes upon load of pdb (Fri Sep 23 2005 - 16:09:11 CDT)
- Re: ???UNSURE??? Re: ???UNSURE??? Re: ???UNSURE??? Re: vmd crashes upon load of pdb (Fri Sep 23 2005 - 15:45:32 CDT)
- Re: ???UNSURE??? Re: ???UNSURE??? Re: vmd crashes upon load of pdb (Fri Sep 23 2005 - 15:08:09 CDT)
- Re: ???UNSURE??? Re: vmd crashes upon load of pdb (Fri Sep 23 2005 - 14:36:55 CDT)
- Re: vmd crashes upon load of pdb (Fri Sep 23 2005 - 13:44:07 CDT)
- Re: tachyon rendering and background color (Fri Sep 23 2005 - 09:50:19 CDT)
- Re: Import gromos output file into VMD without format conversion? (Wed Sep 21 2005 - 14:27:45 CDT)
- Re: How to build a crystal structure from a pdb file ? (Wed Sep 21 2005 - 13:37:21 CDT)
- Re: map files (Wed Sep 21 2005 - 13:22:07 CDT)
- Re: problem with coloring surface by electrostatic potential (Wed Sep 21 2005 - 10:36:03 CDT)
- Re: Import gromos output file into VMD without format conversion? (Wed Sep 21 2005 - 10:20:02 CDT)
- Re: problem with coloring surface by electrostatic potential (Tue Sep 20 2005 - 16:56:43 CDT)
- Re: problem with coloring surface by electrostatic potential (Tue Sep 20 2005 - 14:34:02 CDT)
- Re: problem with coloring surface by electrostatic potential (Tue Sep 20 2005 - 11:29:30 CDT)
- Re: secondary structure assingnment (Tue Sep 20 2005 - 10:14:22 CDT)
- Re: molecules drifted away from the focus.... (Mon Sep 19 2005 - 15:13:15 CDT)
- Re: molecules drifted away from the focus.... (Mon Sep 19 2005 - 15:05:17 CDT)
- Re: screen size (Mon Sep 19 2005 - 10:41:28 CDT)
- Re: keywords to access surface? (Mon Sep 19 2005 - 10:19:59 CDT)
- Re: screen size (Fri Sep 16 2005 - 21:08:55 CDT)
- Re: keywords to access surface? (Fri Sep 16 2005 - 21:03:41 CDT)
- Re: .grd and .srf (Fri Sep 16 2005 - 16:37:21 CDT)
- Re: .grd and .srf (Fri Sep 16 2005 - 16:08:13 CDT)
- Re: Generating an average structure from a trajectory (Fri Sep 16 2005 - 15:38:06 CDT)
- Re: your mail (Fri Sep 16 2005 - 11:19:00 CDT)
- Re: writing pdb (Fri Sep 16 2005 - 11:17:13 CDT)
- Re: visualization of ghemical figure (Fri Sep 16 2005 - 10:30:01 CDT)
- Re: .grd and .srf (Fri Sep 16 2005 - 10:25:47 CDT)
- Re: problem rendering traj file with tachyon (Thu Sep 15 2005 - 11:46:54 CDT)
- Re: use phantom with VMD (Thu Sep 15 2005 - 11:45:30 CDT)
- Re: writing pdb (Thu Sep 15 2005 - 11:41:18 CDT)
- Re: several cmds to read structure and trajectory files (Thu Sep 15 2005 - 11:19:43 CDT)
- Re: Ployhedra in VMD (Thu Sep 15 2005 - 11:11:25 CDT)
- Re: Left Right eye stereo flip in Crystal Eyes (Thu Sep 15 2005 - 11:09:35 CDT)
- Re: DCD file format (Thu Sep 15 2005 - 11:07:50 CDT)
- Re: several coor files from dcd file (Thu Sep 15 2005 - 10:54:59 CDT)
- Re: Zooming with Tcl? (Thu Sep 15 2005 - 10:50:31 CDT)
- Re: index (Thu Sep 08 2005 - 10:54:50 CDT)
- Re: index (Thu Sep 08 2005 - 10:39:34 CDT)
- Re: help: i can not type words in hostname textbox in imd (Thu Sep 08 2005 - 10:15:39 CDT)
- Re: 100% of CPU usage (Wed Sep 07 2005 - 22:22:16 CDT)
- Re: Analyzing pdb files remotely with VMD installed locally (Wed Sep 07 2005 - 16:14:26 CDT)
- Re: Fw: visualising bonds in vmd (Wed Sep 07 2005 - 16:11:13 CDT)
- Re: CAVE (Wed Sep 07 2005 - 15:47:10 CDT)
- Re: Analyzing pdb files remotely with VMD installed locally (Wed Sep 07 2005 - 11:33:09 CDT)
- Re: help: i can not type words in hostname textbox in imd (Wed Sep 07 2005 - 10:00:53 CDT)
- Re: CAVE (Tue Sep 06 2005 - 23:32:18 CDT)
- Re: VMD crashes with FX440 and RH Entreprise 4.0 (Tue Sep 06 2005 - 13:13:31 CDT)
- Re: PDB to STL help needed (Tue Sep 06 2005 - 11:15:01 CDT)
- Re: VMD crashes with FX440 and RH Entreprise 4.0 (Tue Sep 06 2005 - 11:13:08 CDT)
- Re: how to start vmd with "menu tkcon on"? (Tue Sep 06 2005 - 09:58:37 CDT)
- Re: VMD crashes with FX440 and RH Entreprise 4.0 (Tue Sep 06 2005 - 09:56:05 CDT)
- Re: Sybyl trajectory (Tue Sep 06 2005 - 09:43:23 CDT)
- Re: IED2.02 Problem (Tue Sep 06 2005 - 09:38:58 CDT)
- Re: how to start vmd with "menu tkcon on"? (Tue Sep 06 2005 - 09:36:23 CDT)
- Re: X error (Mon Sep 05 2005 - 13:44:20 CDT)
- Re: Sybyl trajectory (Mon Sep 05 2005 - 13:41:23 CDT)
- Re: TkCon History (Mon Sep 05 2005 - 13:38:22 CDT)
- Re: TkCon History (Mon Sep 05 2005 - 13:36:28 CDT)
- Re: help: i can not type words in hostname textbox in imd (Mon Sep 05 2005 - 13:28:53 CDT)
- Re: coloring surface by volume (Fri Sep 02 2005 - 17:12:18 CDT)
- Re: Making good trayectory movies (Tue Aug 30 2005 - 13:36:37 CDT)
- Re: Problems with AMBER trajectories (MOVIE!) and crd-files (Tue Aug 30 2005 - 10:15:22 CDT)
- Re: plugin problem (Tue Aug 30 2005 - 10:14:13 CDT)
- Re: Problems with AMBER trajectories (MOVIE!) and crd-files (Mon Aug 29 2005 - 09:43:30 CDT)
- Re: Problems with VMD in Federa 4 (x86_64) (Sat Aug 27 2005 - 22:30:18 CDT)
- Re: No bonds (Thu Aug 25 2005 - 18:11:57 CDT)
- Re: MSMS calculations (Thu Aug 25 2005 - 18:10:50 CDT)
- Re: Read support for CHARMM binary coordinate file? (Thu Aug 25 2005 - 17:44:57 CDT)
- Re: Intersurf & MAC OSX 10.3 (Thu Aug 25 2005 - 17:35:11 CDT)
- Re: molecule.write() (Thu Aug 25 2005 - 10:42:40 CDT)
- Re: No bonds (Wed Aug 24 2005 - 10:21:05 CDT)
- Re: Intersurf & MAC OSX 10.3 (Tue Aug 23 2005 - 15:45:28 CDT)
- Re: protein-lipids v z coordinate (Tue Aug 23 2005 - 12:58:50 CDT)
- Re: Plugins update (Tue Aug 23 2005 - 09:41:09 CDT)
- Re: Using VMD to overlay structures (Mon Aug 22 2005 - 11:11:44 CDT)
- Re: Adjacent surface? (Mon Aug 22 2005 - 11:05:33 CDT)
- Re: Secondary Structure Color Definitions (Mon Aug 22 2005 - 11:00:12 CDT)
- Re: VMD fails to run (Mon Aug 22 2005 - 01:37:12 CDT)
- Re: Selecting residues by number (Wed Aug 17 2005 - 18:51:45 CDT)
- Re: Selecting residues by number (Wed Aug 17 2005 - 18:45:02 CDT)
- Re: Selecting residues by number (Wed Aug 17 2005 - 18:14:32 CDT)
- Re: dssp in vmd (Wed Aug 17 2005 - 14:39:51 CDT)
- Re: Script for calculating energy of a water molecule (Wed Aug 17 2005 - 14:32:41 CDT)
- Re: Visualizing an infinite carbon nanotube (Mon Aug 15 2005 - 14:07:42 CDT)
- Re: Problem with DNA bonds (Mon Aug 15 2005 - 14:05:54 CDT)
- Re: help with BIOMT (Fri Aug 12 2005 - 14:04:21 CDT)
- Re: creating movie files (Fri Aug 12 2005 - 10:58:16 CDT)
- Re: Backbone representation of RNA (Fri Aug 12 2005 - 10:55:56 CDT)
- Re: vmd with no x (Thu Aug 11 2005 - 16:42:59 CDT)
- Re: atom index starting at 0 (Thu Aug 11 2005 - 16:19:57 CDT)
- Re: displaying double, triple bonds (Thu Aug 11 2005 - 15:41:31 CDT)
- Re: output secondary structure assignment into a file (Thu Aug 11 2005 - 14:33:06 CDT)
- Re: all within selection (Thu Aug 11 2005 - 11:56:29 CDT)
- Re: File size limits (Thu Aug 11 2005 - 09:57:11 CDT)
- Re: Question about .vmdsensors configuration (Thu Aug 11 2005 - 09:48:32 CDT)
- Re: 100% of CPU usage (Thu Aug 11 2005 - 09:46:14 CDT)
- Re: using VMD with LAMMPS (Wed Aug 10 2005 - 14:24:22 CDT)
- Re: VMD-1.8.3 installation erRor (Wed Aug 10 2005 - 14:22:15 CDT)
- Re: SASA (Mon Aug 08 2005 - 19:19:47 CDT)
- Re: Atom renumbering in DCD file (Mon Aug 08 2005 - 19:08:03 CDT)
- Re: Draw Bonds (Mon Aug 08 2005 - 18:48:11 CDT)
- Re: Re: wrong bond drawing with pdb files (Fri Aug 05 2005 - 15:43:27 CDT)
- Re: wrapping and extra points in gromacs trajectories (Fri Aug 05 2005 - 14:44:06 CDT)
- Re: Video card driver (Thu Aug 04 2005 - 14:12:49 CDT)
- Re: dihedral angles cleaned up (Thu Aug 04 2005 - 11:08:08 CDT)
- Re: PDB to STL help needed (Wed Aug 03 2005 - 12:59:09 CDT)
- Re: Nanotube Simulations (Tue Aug 02 2005 - 12:34:58 CDT)
- Re: weird atomselect problem (Mon Aug 01 2005 - 14:31:20 CDT)
- Re: rotate atomic coordinates? (Mon Aug 01 2005 - 14:32:54 CDT)
- Re: CMYK images (Fri Jul 29 2005 - 18:21:28 CDT)
- Re: FC4 stereo problems (Thu Jul 28 2005 - 12:55:24 CDT)
- Re: Why vmd can't connect vrpn server in windows xp? (Thu Jul 28 2005 - 12:49:48 CDT)
- Re: sun server with graphics card (Thu Jul 28 2005 - 10:05:16 CDT)
- Re: FC4 stereo problems (Wed Jul 27 2005 - 18:59:05 CDT)
- Re: tcl syntax problem (Wed Jul 27 2005 - 11:47:32 CDT)
- Re: SAS values for a residue (Wed Jul 27 2005 - 10:30:31 CDT)
- Re: Visualizing Delphi output (Tue Jul 26 2005 - 10:11:45 CDT)
- Re: vmd-vrpn in windowsXP (Tue Jul 26 2005 - 09:57:35 CDT)
- Re: VMD + linux (64) + Flock of Birds (Mon Jul 25 2005 - 15:11:19 CDT)
- Re: Re: namd-l: catdcd and dcdunitcell (Mon Jul 25 2005 - 13:50:03 CDT)
- Re: White background (Mon Jul 25 2005 - 13:13:30 CDT)
- Re: VMD running slow (Mon Jul 25 2005 - 13:06:13 CDT)
- Re: problem about hotkey for vmd-1.8.3 windows version (Mon Jul 25 2005 - 12:49:18 CDT)
- Re: VMD running slow (Mon Jul 25 2005 - 12:44:08 CDT)
- Re: VMD + linux (64) + Flock of Birds (Tue Jul 19 2005 - 16:32:46 CDT)
- Re: Re: wrong bond drawing with pdb files (Wed Jul 13 2005 - 10:04:22 CDT)
- Re: vmd mpg movies not working in office 2000 (Tue Jul 12 2005 - 19:18:32 CDT)
- Re: geometric location of amino acids in proteins (Tue Jul 12 2005 - 17:59:40 CDT)
- Re: vmd mpg movies not working in office 2000 (Tue Jul 12 2005 - 17:49:35 CDT)
- Re: wrong bond drawing with pdb files (Tue Jul 12 2005 - 17:37:23 CDT)
- Re: display Gaussian cube file (Tue Jul 12 2005 - 13:05:46 CDT)
- Re: changing occupancy for bunch of PDB file (Fri Jul 08 2005 - 13:58:44 CDT)
- Re: problems to launch VMD 1.83 in MAC os x tiger (Fri Jul 08 2005 - 12:48:39 CDT)
- Re: Test version of VMD 1.8.4 for Linux/IA64 (SGI Prism, Altix, etc..) (Wed Jul 06 2005 - 13:02:03 CDT)
- Re: IndexError in ied (Wed Jul 06 2005 - 12:46:23 CDT)
- Re: Grasp plugin... (Wed Jul 06 2005 - 10:14:05 CDT)
- Re: a suggestion and query on command usage (Tue Jul 05 2005 - 10:06:10 CDT)
- Re: Test version of VMD 1.8.4 for Linux/IA64 (SGI Prism, Altix, etc..) (Tue Jul 05 2005 - 09:58:58 CDT)
- Re: can't see all frames in XYZ file (Thu Jun 30 2005 - 14:03:37 CDT)
- Re: exclude residues (Thu Jun 30 2005 - 13:40:35 CDT)
- Re: Viewing an SDF file in VMD (Thu Jun 30 2005 - 13:38:44 CDT)
- Re: Updating COLOURS for atoms (Tue Jun 28 2005 - 19:26:28 CDT)
- Re: Re: Display shuts down on startup (Tue Jun 28 2005 - 15:35:12 CDT)
- Re: hydrogen bond energy (Tue Jun 28 2005 - 11:09:04 CDT)
- Re: MSMS (Mon Jun 27 2005 - 10:01:45 CDT)
- Re: Display shuts down on startup (Mon Jun 27 2005 - 09:52:56 CDT)
- Re: VMD 1.8.4 test builds, 32-bit and 64-bit AIX5... (Fri Jun 24 2005 - 18:24:55 CDT)
- Re: Test version of VMD 1.8.4 for Linux/IA64 (SGI Prism, Altix, etc..) (Fri Jun 24 2005 - 11:21:56 CDT)
- Re: VMD 1.8.4 test builds, 32-bit and 64-bit AIX5... (Fri Jun 24 2005 - 11:18:50 CDT)
- Re: do not compute/draw bonds? (Fri Jun 24 2005 - 11:02:38 CDT)
- Re: Create a new color category (Wed Jun 22 2005 - 14:19:38 CDT)
- Re: visualising protein dynamics (Wed Jun 22 2005 - 14:03:03 CDT)
- Re: VMD 1.8.4 test builds, 32-bit and 64-bit AIX5... (Wed Jun 22 2005 - 13:45:21 CDT)
- Re: Test version of VMD 1.8.4 for Linux/IA64 (SGI Prism, Altix, etc..) (Wed Jun 22 2005 - 13:34:51 CDT)
- Re: VMD 1.8.4 test builds, 32-bit and 64-bit AIX5... (Wed Jun 22 2005 - 11:11:44 CDT)
- Re: Test version of VMD 1.8.4 for Linux/IA64 (SGI Prism, Altix, etc..) (Wed Jun 22 2005 - 10:58:38 CDT)
- Re: VMD 1.8.4 test builds, 32-bit and 64-bit AIX5... (Tue Jun 21 2005 - 17:50:56 CDT)
- Re: Re: "animate readdel"? (was: multiple automated calls to NAMD) (Tue Jun 21 2005 - 17:42:11 CDT)
- Re: (Tue Jun 21 2005 - 17:23:53 CDT)
- Re: Strange VMD output (Tue Jun 21 2005 - 16:01:12 CDT)
- Re: Create a new color category (Tue Jun 21 2005 - 15:52:39 CDT)
- Re: IMD question (Tue Jun 21 2005 - 15:48:42 CDT)
- Re: autoimd on windows (Tue Jun 21 2005 - 15:43:11 CDT)
- VMD 1.8.4 test builds, 32-bit and 64-bit AIX5... (Tue Jun 21 2005 - 14:46:32 CDT)
- Test version of VMD 1.8.4 for Linux/IA64 (SGI Prism, Altix, etc..) (Tue Jun 21 2005 - 13:51:51 CDT)
- Re: Unable to create OpenGL window for vmd starting (Tue Jun 21 2005 - 10:54:24 CDT)
- Re: vmd 1.8.3 on OS X 10.2.8 (Jaguar) libmx.A.dylib (Tue Jun 21 2005 - 09:40:22 CDT)
- Re: Unable to create OpenGL window for vmd starting (Mon Jun 20 2005 - 18:07:45 CDT)
- Re: vmd 1.8.3 on OS X 10.2.8 (Jaguar) libmx.A.dylib (Mon Jun 20 2005 - 18:06:21 CDT)
- Re: Rotating cube files (Mon Jun 20 2005 - 17:35:43 CDT)
- Re: Creating a demo - updating the OpenGL window (Mon Jun 20 2005 - 14:40:54 CDT)
- Re: Unable to create OpenGL window for vmd starting (Mon Jun 20 2005 - 11:04:56 CDT)
- Re: vmd version for solaris 8 (Mon Jun 20 2005 - 10:00:25 CDT)
- Re: VMD for SGI Altix/Prism, IBM AIX5, etc.. (Mon Jun 20 2005 - 09:58:17 CDT)
- Re: render question (Fri Jun 17 2005 - 17:42:27 CDT)
- Re: vmd load molecule problem (Fri Jun 17 2005 - 17:39:48 CDT)
- Re: Mesa libs + Mac OS X + HW stereo + vmd (Fri Jun 17 2005 - 17:20:52 CDT)
- Re: vmd version for solaris 8 (Fri Jun 17 2005 - 16:33:05 CDT)
- Re: VMD on Debian Linux Urgent (Mon Jun 13 2005 - 13:27:04 CDT)
- Re: Eye position / camera position (Thu Jun 09 2005 - 16:51:33 CDT)
- Re: memory problem p4_Globmemsize (Wed Jun 08 2005 - 16:05:04 CDT)
- Re: Membrane plugin error? (Wed Jun 08 2005 - 13:24:00 CDT)
- Re: about gamess plugin (Mon Jun 06 2005 - 12:49:20 CDT)
- Re: installation of vmd 1.8.3 (Fri Jun 03 2005 - 14:02:11 CDT)
- Re: vmd installation with Mesa installed in a non-standard location (Thu Jun 02 2005 - 17:05:50 CDT)
- Re: Re: [PyMOL] nVidia Driver 7664 for Linux (Thu Jun 02 2005 - 15:12:06 CDT)
- Re: nVidia Driver 7664 for Linux (Thu Jun 02 2005 - 13:27:02 CDT)
- Re: Error message disappears before I can read it! (Thu Jun 02 2005 - 12:56:48 CDT)
- Re: bad resolution and too slow on mandrake 10.0 (Fri May 27 2005 - 15:00:06 CDT)
- Re: lipid definition (Thu May 26 2005 - 10:17:55 CDT)
- Re: molfile plugin and the NetCDF file format (Thu May 26 2005 - 09:49:31 CDT)
- VMD for SGI Altix/Prism, IBM AIX5, etc.. (Wed May 25 2005 - 15:48:27 CDT)
- Re: plugins compilation problem - gcc switches (Wed May 25 2005 - 10:26:12 CDT)
- Re: an inconsistance between psf file and coor file after equilibration (Tue May 24 2005 - 11:12:22 CDT)
- Re: Volume coloring problems (Tue May 24 2005 - 09:06:33 CDT)
- Re: Calculate the area of overlap? (Mon May 23 2005 - 10:22:28 CDT)
- Re: Compiling VMD: Trouble with DispCmds.C (Mon May 23 2005 - 10:04:27 CDT)
- Re: Adding a logo to a screenshot (Fri May 20 2005 - 15:28:47 CDT)
- Re: Hydration (Wed May 18 2005 - 13:36:52 CDT)
- Re: ied.py : tk.h version (8.3) doesn't match libtk.a version (8.4) (Wed May 18 2005 - 13:34:10 CDT)
- Re: Re: fglrx driver workaround? (Wed May 18 2005 - 11:15:59 CDT)
- Re: Re: fglrx driver workaround? (Wed May 18 2005 - 11:03:36 CDT)
- Re: Re: fglrx driver workaround? (Mon May 16 2005 - 19:51:04 CDT)
- Re: VMD does not run on MacOS X 10.4 Tiger (Mon May 16 2005 - 19:41:03 CDT)
- Re: Buried Surface Area (Fri May 13 2005 - 09:52:30 CDT)
- Re: What is missing when using VMDSIMPLEGRAPHICS 1? (Fri May 13 2005 - 02:30:27 CDT)
- Re: VMD crash on athlon64 with licorice representation (Fri May 13 2005 - 01:48:45 CDT)
- Re: What is missing when using VMDSIMPLEGRAPHICS 1? (Fri May 13 2005 - 01:18:00 CDT)
- Re: how can I read volume data in spider-format (Thu May 12 2005 - 20:09:06 CDT)
- Re: VMD crash on athlon64 with licorice representation (Thu May 12 2005 - 13:47:55 CDT)
- Re: VMD crash on athlon64 with licorice representation (Wed May 11 2005 - 10:28:18 CDT)
- Re: Maximum numbers of atoms (Tue May 10 2005 - 22:44:16 CDT)
- Re: select within distance range (Tue May 10 2005 - 13:18:13 CDT)
- Re: select within distance range (Tue May 10 2005 - 10:36:24 CDT)
- Re: radius of gyration (Tue May 10 2005 - 10:16:01 CDT)
- Re: how to delete atoms from the command line? (Tue May 10 2005 - 09:58:51 CDT)
- Re: Head tracking with VRPN and VMD (Mon May 09 2005 - 10:07:04 CDT)
- Re: Plugins... (Sat May 07 2005 - 11:31:35 CDT)
- Re: VMD for ALTIX (Thu May 05 2005 - 13:11:16 CDT)
- Re: How to determine distribution of the orientation of a molecule (Thu May 05 2005 - 10:05:16 CDT)
- Re: Error Encountered in making vmdmovie (Tue May 03 2005 - 09:59:45 CDT)
- Re: compiling VMD 1.8.3 (Mon May 02 2005 - 09:56:44 CDT)
- Re: VMD crash on PDB read (Mon May 02 2005 - 09:54:50 CDT)
- Updated APBS plugin for VMD available for testing... (Thu Apr 28 2005 - 14:15:00 CDT)
- Re: namd-l: Re: Interactive Simulations, ligand size limits.... (Thu Apr 28 2005 - 13:05:40 CDT)
- Re: namd-l: Re: Interactive Simulations, ligand size limits.... (Thu Apr 28 2005 - 10:08:17 CDT)
- Re: Problem with "bigdcd" (Thu Apr 28 2005 - 09:58:49 CDT)
- Re: compiling VMD on mac (Tue Apr 26 2005 - 17:13:36 CDT)
- Re: compiling VMD on mac (Tue Apr 26 2005 - 14:25:13 CDT)
- Re: Sphere size (Fri Apr 22 2005 - 18:08:27 CDT)
- Re: dcd large files, charmm-VMD (Fri Apr 22 2005 - 11:11:45 CDT)
- Re: dcd large files, charmm-VMD (Fri Apr 22 2005 - 11:06:09 CDT)
- Re: dcd large files, charmm-VMD (Fri Apr 22 2005 - 10:34:41 CDT)
- Re: dcd large files, charmm-VMD (Fri Apr 22 2005 - 10:33:21 CDT)
- Re: dcd large files, charmm-VMD (Fri Apr 22 2005 - 10:21:17 CDT)
- Re: console in vmd-1.8.3 amd64 is blank (like white text on white background) so I can't see any output messages (Thu Apr 21 2005 - 17:37:39 CDT)
- Re: console in vmd-1.8.3 amd64 is blank (like white text on white background) so I can't see any output messages (Thu Apr 21 2005 - 17:22:44 CDT)
- Re: representation_problem (Thu Apr 21 2005 - 16:40:07 CDT)
- Re: namd-l: Re: Interactive Simulations, ligand size limits.... (Thu Apr 21 2005 - 16:28:08 CDT)
- Re: Sphere size (Wed Apr 20 2005 - 17:30:30 CDT)
- Re: Interactive Simulations, ligand size limits.... (Wed Apr 20 2005 - 16:12:20 CDT)
- Re: Enabling a menu on the top level (Wed Apr 20 2005 - 15:43:27 CDT)
- Re: compiling VMD on mac (Wed Apr 20 2005 - 14:57:42 CDT)
- Re: AMBER pbsa electrostatic potential map (Tue Apr 19 2005 - 21:16:05 CDT)
- Re: Basic membrane plugin questions (Tue Apr 19 2005 - 18:42:53 CDT)
- Re: Normal mode analysis (Tue Apr 19 2005 - 16:45:19 CDT)
- Re: AMBER pbsa electrostatic potential map (Tue Apr 19 2005 - 16:11:51 CDT)
- Re: Setting the speed of rotation (Tue Apr 19 2005 - 10:28:58 CDT)
- Re: AMBER pbsa electrostatic potential map (Tue Apr 19 2005 - 10:22:21 CDT)
- Re: AMBER pbsa electrostatic potential map (Mon Apr 18 2005 - 10:13:39 CDT)
- Re: wrong bond and bond breaking (Fri Apr 15 2005 - 11:46:09 CDT)
- Re: Adding color scale bar on the screen (Thu Apr 14 2005 - 20:36:53 CDT)
- Re: Converting graphics to a pdb's coord system (Thu Apr 14 2005 - 16:23:19 CDT)
- Re: MSMS on linux and Draw Multiple Frames in VMD 1.8.3 (Thu Apr 14 2005 - 10:27:58 CDT)
- Re: Customizing VMD Sessions (Thu Apr 14 2005 - 09:46:01 CDT)
- Re: Converting graphics to a pdb's coord system (Wed Apr 13 2005 - 17:29:33 CDT)
- Re: dihedral & g(r) (Wed Apr 13 2005 - 09:34:13 CDT)
- Re: vmdcavemem.... (Tue Apr 12 2005 - 09:16:34 CDT)
- Re: mpg image speed (Mon Apr 11 2005 - 14:44:42 CDT)
- Re: only vmd console (Mon Apr 11 2005 - 13:35:17 CDT)
- Re: mpg image speed (Mon Apr 11 2005 - 10:00:16 CDT)
- Re: only vmd console (Mon Apr 11 2005 - 00:29:17 CDT)
- Re: only vmd console (Mon Apr 11 2005 - 00:30:13 CDT)
- Re: makemovie errors (povray) -- VMD 1.8.3 on MacOS 10.3.8 (Fri Apr 08 2005 - 14:38:30 CDT)
- Re: Opening amber files in VMD (Fri Apr 08 2005 - 13:57:01 CDT)
- Re: makemovie errors (povray) -- VMD 1.8.3 on MacOS 10.3.8 (Thu Apr 07 2005 - 15:31:50 CDT)
- FYI: cause of a common Windows VMD install error message... (Thu Apr 07 2005 - 13:01:43 CDT)
- Re: Choice of a Linux machine for VMD and high-end computing (Wed Apr 06 2005 - 16:01:34 CDT)
- Re: (Wed Apr 06 2005 - 15:05:52 CDT)
- Re: dynamic coloring (Wed Apr 06 2005 - 13:49:01 CDT)
- Re: capturing box dimensions from amber coordinate files (Wed Apr 06 2005 - 13:33:12 CDT)
- Re: Choice of a Linux machine for VMD and high-end computing (Wed Apr 06 2005 - 11:27:54 CDT)
- Re: Displaying simulations and rotations (Wed Apr 06 2005 - 11:23:09 CDT)
- Re: Maximum numbers of atoms (Wed Apr 06 2005 - 11:18:24 CDT)
- Re: solvate numbering problems (Wed Apr 06 2005 - 11:14:38 CDT)
- Re: Install VMD on Mandrake Linux (Wed Apr 06 2005 - 10:59:38 CDT)
- Re: superimpose RNA backbones (Tue Apr 05 2005 - 19:00:45 CDT)
- Re: water inside the protein (Tue Apr 05 2005 - 18:46:30 CDT)
- Re: vmd movie maker (Tue Apr 05 2005 - 18:37:47 CDT)
- Re: Maximum numbers of atoms (Tue Apr 05 2005 - 17:41:22 CDT)
- Re: Maximum numbers of atoms (Tue Apr 05 2005 - 17:31:38 CDT)
- Re: rmsd (Tue Apr 05 2005 - 17:17:10 CDT)
- Re: VMD and Cyclotides... (Tue Apr 05 2005 - 12:54:48 CDT)
- Re: GLSL or Clip plane (Mon Apr 04 2005 - 10:23:44 CDT)
- Re: Errors compiling VMD on 1.8.3 on Solaris x86 (Fri Apr 01 2005 - 18:20:20 CST)
- Re: Errors compiling VMD on 1.8.3 on Solaris x86 (Fri Apr 01 2005 - 18:10:36 CST)
- Re: VMD causing xorg crash (Fri Apr 01 2005 - 16:23:11 CST)
- Re: ATI radeon x300 (Fri Apr 01 2005 - 14:06:16 CST)
- Re: snapshots to pdb (Thu Mar 31 2005 - 13:02:42 CST)
- Re: conformational alignment (Thu Mar 31 2005 - 12:50:53 CST)
- Re: conformational alignment (Thu Mar 31 2005 - 12:40:51 CST)
- Re: conformational alignment (Thu Mar 31 2005 - 10:40:42 CST)
- Re: conformational alignment (Thu Mar 31 2005 - 10:29:54 CST)
- Re: fglrx driver workaround? (Thu Mar 31 2005 - 10:12:55 CST)
- Re: TCL atomselect bug (Wed Mar 30 2005 - 16:19:30 CST)
- Re: Maximum numbers of atoms (Wed Mar 30 2005 - 16:08:25 CST)
- Re: conformational alignment (Wed Mar 30 2005 - 15:30:26 CST)
- Re: Maximum numbers of atoms (Wed Mar 30 2005 - 10:03:16 CST)
- Re: TCL atomselect bug (Tue Mar 29 2005 - 14:56:46 CST)
- Re: TCL atomselect bug (Tue Mar 29 2005 - 14:10:38 CST)
- Re: Python, numpy, and so on .... (Tue Mar 29 2005 - 13:54:50 CST)
- Re: vmd 1.8.3 mac OS-X dlpoly history file (Tue Mar 29 2005 - 12:55:06 CST)
- Re: vmd and Re: [PyMOL] pymol crashes with new [7167] nvidia driver (Tue Mar 29 2005 - 12:52:55 CST)
- Re: vmd and Re: [PyMOL] pymol crashes with new [7167] nvidia driver (Tue Mar 29 2005 - 11:31:14 CST)
- Re: TCL atomselect bug (Tue Mar 29 2005 - 10:02:11 CST)
- Re: resid le 250 (Mon Mar 28 2005 - 13:08:57 CST)
- Re: TCL atomselect bug (Mon Mar 28 2005 - 11:58:17 CST)
- Re: vmd and k3b (Mon Mar 28 2005 - 11:50:07 CST)
- Re: winvmd error (Mon Mar 28 2005 - 10:24:50 CST)
- Re: vmd and Re: [PyMOL] pymol crashes with new [7167] nvidia driver (Mon Mar 28 2005 - 09:10:09 CST)
- Re: VMD does not start on Mac OS 10.3.8 (Fri Mar 18 2005 - 13:48:18 CST)
- Re: Problem using ied.py (Fri Mar 18 2005 - 12:16:30 CST)
- Re: Problem using ied.py (Fri Mar 18 2005 - 12:12:39 CST)
- Re: Python, Numeric, and Mac OS X problem (Fri Mar 18 2005 - 12:05:51 CST)
- Out of town until 3/28/2005... (Fri Mar 18 2005 - 10:54:25 CST)
- Re: install 1.8.3 on RHEL4 (Fri Mar 18 2005 - 10:52:52 CST)
- Re: Can't compile VMD 1.8.3: Tachyon 0.97 needed (Fri Mar 18 2005 - 09:42:22 CST)
- Re: Can vmd select residues in radius of 3.5 to a specific residue? (Fri Mar 18 2005 - 08:16:15 CST)
- Re: install 1.8.3 on RHEL4 (Fri Mar 18 2005 - 08:14:00 CST)
- Re: May I use my own radii? (Thu Mar 17 2005 - 21:37:13 CST)
- Re: install 1.8.3 on RHEL4 (Thu Mar 17 2005 - 14:05:45 CST)
- Re: Mac OS X problems with 1.8.3 (Thu Mar 17 2005 - 09:55:26 CST)
- Re: set a different beta field for each frame of trajectory (Tue Mar 15 2005 - 10:03:49 CST)
- Re: LAMMPS Vizualization (Mon Mar 14 2005 - 15:14:04 CST)
- Re: LAMMPS Vizualization (Mon Mar 14 2005 - 13:33:36 CST)
- Re: viewing .brix maps (Mon Mar 14 2005 - 13:08:22 CST)
- Re: Building plugins with Borland Bcc32 (Mon Mar 14 2005 - 09:47:35 CST)
- Re: coloring way in a volume slice (Fri Mar 11 2005 - 17:17:37 CST)
- Re: limit on segment atom number in solvate and autoionize (Fri Mar 11 2005 - 15:13:12 CST)
- Re: limit on segment atom number in solvate and autoionize (Fri Mar 11 2005 - 13:38:23 CST)
- Re: keeping original coordinates in trajectory (Thu Mar 10 2005 - 10:56:41 CST)
- Re: init.tcl startup problem with vmd 1.8.3 (but 1.8.2 works) (Wed Mar 09 2005 - 13:22:59 CST)
- Re: init.tcl startup problem with vmd 1.8.3 (but 1.8.2 works) (Wed Mar 09 2005 - 13:00:15 CST)
- Re: init.tcl startup problem with vmd 1.8.3 (but 1.8.2 works) (Wed Mar 09 2005 - 12:45:19 CST)
- Re: Intersurf plugin (Tue Mar 08 2005 - 10:59:25 CST)
- Re: Display only side chains (Mon Mar 07 2005 - 16:46:47 CST)
- Re: Re: vmd not starting up on Fedora core 3 linux , InsightII to blame (Sun Mar 06 2005 - 21:46:07 CST)
- Re: Intersurf plugin (Sun Mar 06 2005 - 21:35:26 CST)
- Re: coloring way in a volume slice (Sun Mar 06 2005 - 21:36:34 CST)
- Re: Problem starting VMD with Fedora Core3 (Fri Mar 04 2005 - 09:30:05 CST)
- Re: Problem using ied.py (Fri Mar 04 2005 - 00:58:24 CST)
- Re: Apple hardware configuration (Thu Mar 03 2005 - 15:46:17 CST)
- Re: prefferential adsorption analysis (Thu Mar 03 2005 - 15:40:57 CST)
- Re: Is it possible to write CHARMM crd file from VMD? (Thu Mar 03 2005 - 15:27:01 CST)
- Re: surface residues of protein (Thu Mar 03 2005 - 15:24:50 CST)
- Re: Problem using ied.py (Thu Mar 03 2005 - 15:22:48 CST)
- Re: Is it possible to select a sub-trajectory specificities. (Thu Mar 03 2005 - 15:20:59 CST)
- Re: Re: vmd not starting up on Fedora core 3 linux (Thu Mar 03 2005 - 15:17:44 CST)
- Re: Re: vmd not starting up on Fedora core 3 linux , InsightII to blame (Thu Mar 03 2005 - 15:17:02 CST)
- Re: Pair interaction calculation for large number different pairs (Thu Mar 03 2005 - 15:15:02 CST)
- Re: hbonds time series (Thu Mar 03 2005 - 14:28:24 CST)
- Re: RUNNING VMD (Thu Mar 03 2005 - 13:53:11 CST)
- Re: AutoIMD on VMD 1.8.3 (Thu Mar 03 2005 - 10:42:24 CST)
- Re: Is it possible to select a sub-trajectory specificities. (Thu Mar 03 2005 - 09:52:15 CST)
- Re: error message from IED (Wed Mar 02 2005 - 10:02:54 CST)
- Re: Re: vmd not starting up on Fedora core 3 linux , InsightII to blame (Tue Mar 01 2005 - 17:29:13 CST)
- Re: Volumeslice doesn't work in 1.8.3 (Mon Feb 28 2005 - 15:35:00 CST)
- Re: Volumeslice doesn't work in 1.8.3 (Mon Feb 28 2005 - 14:08:52 CST)
- Re: (Mon Feb 28 2005 - 12:12:13 CST)
- Re: Apple hardware configuration (Mon Feb 28 2005 - 10:48:25 CST)
- Re: surface residues of protein (Mon Feb 28 2005 - 10:38:13 CST)
- Re: surface residues of protein (Mon Feb 28 2005 - 10:17:54 CST)
- Re: (Mon Feb 28 2005 - 10:13:25 CST)
- Re: Is it possible to write CHARMM crd file from VMD? (Thu Feb 24 2005 - 17:42:46 CST)
- Re: printing real 3D model using z-printer (Thu Feb 24 2005 - 16:28:37 CST)
- Re: your mail (Thu Feb 24 2005 - 10:03:15 CST)
- Re: Catching error info before it shuts down ... (Wed Feb 23 2005 - 17:37:44 CST)
- Re: Catching error info before it shuts down ... (Wed Feb 23 2005 - 16:53:48 CST)
- Re: potential surface (Wed Feb 23 2005 - 16:46:15 CST)
- Re: Catching error info before it shuts down ... (Wed Feb 23 2005 - 16:33:17 CST)
- Re: VMD object exported to Pymol (Wed Feb 23 2005 - 16:19:17 CST)
- Re: User colors and povray (Wed Feb 23 2005 - 15:54:48 CST)
- Re: LAMMPS reader (Wed Feb 23 2005 - 15:38:34 CST)
- Re: User colors and povray (Wed Feb 23 2005 - 15:15:17 CST)
- Re: VMD object exported to Pymol (Wed Feb 23 2005 - 13:44:32 CST)
- Re: Catching error info before it shuts down ... (Wed Feb 23 2005 - 11:19:30 CST)
- Re: Volumeslice in arbitrary plane (Wed Feb 23 2005 - 11:07:42 CST)
- Re: your mail (Wed Feb 23 2005 - 10:56:05 CST)
- Re: (Mon Feb 21 2005 - 12:05:33 CST)
- Re: VMD object exported to Pymol (Mon Feb 21 2005 - 11:58:32 CST)
- Re: Catching error info before it shuts down ... (Mon Feb 21 2005 - 11:43:05 CST)
- Re: displaying many frames with periodic images (Mon Feb 21 2005 - 11:30:01 CST)
- Re: vmd 1.8.3 on my mac (Sun Feb 20 2005 - 22:37:43 CST)
- Re: vmdmovie plugin (Fri Feb 18 2005 - 10:41:06 CST)
- Re: Call to Stride program failed (Fri Feb 18 2005 - 10:35:00 CST)
- Re: Call to Stride program failed (Fri Feb 18 2005 - 09:49:33 CST)
- Re: Stereo 3D by the Numbers (Thu Feb 17 2005 - 16:47:20 CST)
- Re: (Thu Feb 17 2005 - 16:42:44 CST)
- Re: Tracking system configuration??? (Thu Feb 17 2005 - 16:13:26 CST)
- Re: Keyboard mapping incorrect for OS X (Thu Feb 17 2005 - 14:42:32 CST)
- Re: PBC atom selection and contacts (Thu Feb 17 2005 - 14:29:25 CST)
- Re: Can't compile VMD 1.8.3: Tachyon 0.97 needed (Thu Feb 17 2005 - 09:48:00 CST)
- Re: Tachyon does not render surfaces colored by EP (Wed Feb 16 2005 - 10:03:35 CST)
- Re: Tachyon does not render surfaces colored by EP (Wed Feb 16 2005 - 09:38:47 CST)
- Announce: VMD 1.8.3 released!! (Wed Feb 16 2005 - 00:09:04 CST)
- Re: PBC atom selection and contacts (Mon Feb 14 2005 - 11:29:42 CST)
- Re: window size (Thu Feb 10 2005 - 15:23:39 CST)
- Re: prefferential adsorption analysis (Thu Feb 10 2005 - 10:57:19 CST)
- Re: problem (Wed Feb 09 2005 - 10:05:25 CST)
- Re: Calling Python hackers.... (Tue Feb 08 2005 - 14:00:36 CST)
- Re: vrml2 export without PROTO? (Tue Feb 08 2005 - 10:15:41 CST)
- Re: Surface accesible area w/v1.8.3beta (Mon Feb 07 2005 - 19:48:40 CST)
- Re: volume shading in 1.8.3b1 ? (Mon Feb 07 2005 - 11:56:58 CST)
- Re: Surface accesible area w/v1.8.3beta (Mon Feb 07 2005 - 11:53:12 CST)
- Re: Surface accesible area w/v1.8.3beta (Mon Feb 07 2005 - 11:39:06 CST)
- Re: SMD (Mon Feb 07 2005 - 10:33:32 CST)
- Re: volume shading in 1.8.3b1 ? (Mon Feb 07 2005 - 10:07:46 CST)
- Re: vrml2 export without PROTO? (Mon Feb 07 2005 - 10:03:35 CST)
- Re: Calling Python hackers.... (Sun Feb 06 2005 - 20:00:30 CST)
- Calling Python hackers.... (Fri Feb 04 2005 - 14:56:59 CST)
- Re: openGL error (Fri Feb 04 2005 - 14:32:28 CST)
- Re: installation of VIDEOMACH, how to point to the location of the files (Fri Feb 04 2005 - 14:31:15 CST)
- Re: openGL error (Fri Feb 04 2005 - 11:09:01 CST)
- Re: installation of VIDEOMACH, how to point to the location of the files (Fri Feb 04 2005 - 09:57:09 CST)
- Re: openGL error (Fri Feb 04 2005 - 09:55:38 CST)
- Re: trio and osX (Thu Feb 03 2005 - 18:22:19 CST)
- Re: multiple alignment tool (Thu Feb 03 2005 - 14:22:49 CST)
- Re: How to activate E2SUN emitter (Thu Feb 03 2005 - 14:20:28 CST)
- Re: Outputing Dihedral Indexes for key structures (backbone, alpha-helix, etc...) (Wed Feb 02 2005 - 10:08:07 CST)
- Re: dummy atom ? (Wed Feb 02 2005 - 09:59:34 CST)
- Re: How to activate E2SUN emitter (Tue Feb 01 2005 - 15:59:56 CST)
- Re: Crosseye stereo image rendering (Tue Feb 01 2005 - 15:32:03 CST)
- Re: Vibration (Tue Feb 01 2005 - 12:57:20 CST)
- Re: variable atom count in XYZ multiframe trajectory (Tue Feb 01 2005 - 11:12:55 CST)
- Re: Matrix in VMD (Mon Jan 31 2005 - 14:18:17 CST)
- Re: molecular orientation (Mon Jan 31 2005 - 13:40:42 CST)
- Re: vmdmovie command line (Mon Jan 31 2005 - 13:35:36 CST)
- Re: making animations (Mon Jan 31 2005 - 13:21:05 CST)
- Re: How to activate E2SUN emitter (Mon Jan 31 2005 - 09:44:28 CST)
- Re: Display on a Graphic Cluster (Fri Jan 28 2005 - 17:37:08 CST)
- Re: How do I use the plugin to read the DLPOLY HISTORY file? (Fri Jan 28 2005 - 15:50:45 CST)
- Re: Display on a Graphic Cluster (Fri Jan 28 2005 - 13:55:58 CST)
- Re: sidechain atomselection (Thu Jan 27 2005 - 16:39:24 CST)
- Re: vmd and hull (Thu Jan 27 2005 - 11:16:40 CST)
- Re: parm7 plugin (Wed Jan 26 2005 - 10:12:00 CST)
- Re: script for mapping the electrostatic potential from APBS on surfaces (Wed Jan 26 2005 - 09:38:50 CST)
- Re: which nForce to use? (Tue Jan 25 2005 - 12:54:35 CST)
- Re: APBS Plugin (Tue Jan 25 2005 - 11:22:53 CST)
- Re: Grasp file format for VMD!! (Mon Jan 24 2005 - 17:26:08 CST)
- Re: HOW TO: visualization of electron density maps (Mon Jan 24 2005 - 14:31:33 CST)
- Re: unwrapping 'wrapping' DCd files (Mon Jan 24 2005 - 14:22:45 CST)
- Re: how to display PDB with MODEL card (Fri Jan 21 2005 - 17:32:35 CST)
- Re: Autoionize / SODIUM (Fri Jan 21 2005 - 17:30:29 CST)
- Re: dynamic coloring (Fri Jan 21 2005 - 17:26:46 CST)
- Re: python or Tcl/Tk (Fri Jan 21 2005 - 17:27:24 CST)
- Re: model export (Wed Jan 19 2005 - 16:48:59 CST)
- Re: 3D/stereo hardware recommendations wanted!!! (Fri Jan 14 2005 - 11:29:36 CST)
- Stereo 3D matters to me (Fri Jan 14 2005 - 10:02:50 CST)
- Re: stereo for XP and Linux (Wed Jan 12 2005 - 11:30:18 CST)
- Re: Deleting atomselect selections for proper memory management (Wed Jan 12 2005 - 10:22:00 CST)
- Re: Fwd: linux FC3 VMD vs insightII conflict (Wed Jan 12 2005 - 10:20:08 CST)
- Re: angle between two vectors (Tue Jan 11 2005 - 19:05:43 CST)
- Re: vmd exit tcl callback (Tue Jan 11 2005 - 15:41:03 CST)
- Re: vmd not starting up on Fedora core 3 linux , nVidia quadro 980 XGL, nVidia 6629 driver (Tue Jan 11 2005 - 11:09:17 CST)
- Re: vmd not starting up on Fedora core 3 linux , nVidia quadro 980 XGL, nVidia 6629 driver (Mon Jan 10 2005 - 18:44:30 CST)
- Re: atom index starting at 0 (Mon Jan 10 2005 - 18:38:51 CST)
- Re: Re: vmd not starting up on Fedora core 3 linux , nVidia quadro 980 XGL, nVidia 6629 driver (Mon Jan 10 2005 - 18:05:54 CST)
- Re: VMD and windows (Mon Jan 10 2005 - 18:02:41 CST)
- Re: Possible values for "select_method"? (Mon Jan 10 2005 - 17:01:31 CST)
- Re: atom index starting at 0 (Fri Jan 07 2005 - 16:10:41 CST)
- Re: vmd not starting up on Fedora core 3 linux , nVidia quadro 980 XGL, nVidia 6629 driver (Thu Jan 06 2005 - 17:28:14 CST)
- Re: nvidia quadro, linux_x86, and performance difference w/nvidia drivers 1.0.5336 vs anything newer or older on VMD 1.8.2 (Tue Jan 04 2005 - 18:22:52 CST)
- Re: nvidia quadro, linux_x86, and performance difference w/nvidia drivers 1.0.5336 vs anything newer or older on VMD 1.8.2 (Tue Jan 04 2005 - 17:45:07 CST)
- Re: nvidia quadro, linux_x86, and performance difference w/nvidia drivers 1.0.5336 vs anything newer or older on VMD 1.8.2 (Tue Jan 04 2005 - 16:26:29 CST)
- Re: pdb files (Tue Jan 04 2005 - 10:26:53 CST)
- Re: pdb files (Tue Jan 04 2005 - 10:23:26 CST)
- Re: dcd file appears to contain no timesteps (Tue Jan 04 2005 - 10:18:52 CST)
- Re: merge (Mon Jan 03 2005 - 16:20:51 CST)
- Re: your mail (Mon Jan 03 2005 - 15:15:20 CST)
- Re: ERROR) Failed to create Surf atom radii input file (Wed Dec 29 2004 - 18:14:08 CST)
- Re: Drawing oriented cylinders (Wed Dec 29 2004 - 18:04:17 CST)
- Re: about vmd (Wed Dec 29 2004 - 18:07:49 CST)
- Re: Stereo on an SGI Octane2 using Crystal Eyes (Tue Dec 28 2004 - 11:23:35 CST)
- Re: VMD and Remote X-Servers (Tue Dec 28 2004 - 10:56:26 CST)
- Re: ERROR) Failed to create Surf atom radii input file (Tue Dec 28 2004 - 10:46:02 CST)
- Re: VMD on Linux RH9 with ATI's fglrx-4.3.0-3.14.6 1280x1024@100Hz dumping core ... any helpful advice :>? (Tue Dec 21 2004 - 10:22:46 CST)
- Re: torsions = NaN ? (Tue Dec 21 2004 - 10:14:12 CST)
- Re: turning Info output off in vmd console? (Fri Dec 17 2004 - 10:32:39 CST)
- Re: VMD for ALTIX (Fri Dec 17 2004 - 10:31:05 CST)
- Re: VMDNUMPY and OS X (Panther) (Thu Dec 16 2004 - 16:22:12 CST)
- Re: Solvent accessible area/Radii definition (Thu Dec 16 2004 - 13:55:00 CST)
- Re: DynamicBonds representation (Thu Dec 16 2004 - 13:33:13 CST)
- Re: VMD plugin: Membrane: POPG (Thu Dec 16 2004 - 13:35:23 CST)
- Re: Autoionize plugin problem (Thu Dec 16 2004 - 11:30:21 CST)
- Re: Screen corruption (Wed Dec 15 2004 - 08:57:05 CST)
- Re: Virtual Reality and VMD (Tue Dec 14 2004 - 10:45:45 CST)
- Re: CAVE on OS X (Tue Dec 14 2004 - 09:44:54 CST)
- Re: Virtual Reality and VMD (Tue Dec 14 2004 - 09:10:30 CST)
- Re: Multiple Sequence Alignment Extension (Tue Dec 14 2004 - 08:55:41 CST)
- Re: How to use solvate add water in amber crd/parm files? (Fri Dec 10 2004 - 02:22:22 CST)
- Re: Solvent accessible surface area (Wed Dec 08 2004 - 22:51:02 CST)
- Re: VMD 1.8.3 beta 1 available for testing/feedback (Mon Dec 06 2004 - 12:42:59 CST)
- Re: problem Nvidia and vmd (Mon Dec 06 2004 - 11:14:26 CST)
- Re: solvate problem (Mon Dec 06 2004 - 09:42:54 CST)
- VMD 1.8.3 beta 1 available for testing/feedback (Sun Dec 05 2004 - 22:44:56 CST)
- Re: Difficulties using Crystal Eyes 3 (Thu Dec 02 2004 - 12:54:23 CST)
- Re: VMD compatibility with graphics card (Thu Dec 02 2004 - 09:55:55 CST)
- Re: Difficulties using Crystal Eyes 3 (Thu Dec 02 2004 - 09:51:12 CST)
- Re: distribution analysis (Wed Dec 01 2004 - 10:43:51 CST)
- Re: distribution analysis (Wed Dec 01 2004 - 10:02:22 CST)
- Re: MSMS variable (Tue Nov 30 2004 - 16:53:35 CST)
- Re: MSMS variable (Tue Nov 30 2004 - 16:34:41 CST)
- Re: Povray & color gradients (Mon Nov 29 2004 - 00:31:16 CST)
- Re: MSMS variable (Mon Nov 29 2004 - 00:08:22 CST)
- Re: Problems with Mac OSX VMD and certain PDB files (Wed Nov 24 2004 - 13:26:50 CST)
- Re: MSMS variable (Wed Nov 24 2004 - 09:51:44 CST)
- Re: Label using TCL (Mon Nov 22 2004 - 21:16:10 CST)
- Re: obtaining lists of bond, angle, and dihedral interactions (Mon Nov 22 2004 - 21:11:43 CST)
- Re: Tcl startup error on 3X3 tiled display (Fri Nov 19 2004 - 13:05:31 CST)
- Re: measure fit alignment problems (Fri Nov 19 2004 - 10:24:35 CST)
- Re: Updating selections.... (Thu Nov 18 2004 - 18:47:11 CST)
- Re: Re: your mail (Thu Nov 18 2004 - 17:41:57 CST)
- Re: Re: your mail (Thu Nov 18 2004 - 17:16:45 CST)
- Re: Drawing Vectors (Thu Nov 18 2004 - 17:06:08 CST)
- Re: Move molecule (Thu Nov 18 2004 - 14:26:51 CST)
- Re: your mail (Thu Nov 18 2004 - 10:11:18 CST)
- Re: Converting .txt trajectory files to VMD compatible format (Wed Nov 17 2004 - 11:20:27 CST)
- Re: VMD newbie question (Wed Nov 17 2004 - 11:17:10 CST)
- Re: Drawing Vectors (Wed Nov 17 2004 - 10:23:17 CST)
- Re: Electrostatic potential mapping (Mon Nov 15 2004 - 15:40:21 CST)
- Re: loading limits (Fri Nov 12 2004 - 10:36:00 CST)
- Re: Coloring by type? (Thu Nov 11 2004 - 21:51:00 CST)
- Re: LAMMPS visualization (Thu Nov 11 2004 - 15:13:14 CST)
- Re: Coloring by type? (Thu Nov 11 2004 - 10:57:55 CST)
- Re: writepdb and list problem (Thu Nov 11 2004 - 10:39:11 CST)
- Re: plot color scale for volume slice (Sun Nov 07 2004 - 21:02:23 CST)
- Re: Any methods for real stereo viewing with Mac and OsX (Sat Nov 06 2004 - 12:41:30 CST)
- Re: Converting .txt trajectory files to VMD compatible format (Fri Nov 05 2004 - 11:25:08 CST)
- Re: linux installation (Wed Nov 03 2004 - 10:02:40 CST)
- Re: trajectory loading (Tue Nov 02 2004 - 09:31:44 CST)
- Re: question on ion size (Mon Nov 01 2004 - 18:09:26 CST)
- Re: web script (Mon Nov 01 2004 - 14:55:37 CST)
- Re: web script (Mon Nov 01 2004 - 13:51:05 CST)
- Re: web script (Fri Oct 29 2004 - 19:08:40 CDT)
- Re: Install VMD on Window XP (Fri Oct 29 2004 - 15:34:06 CDT)
- Re: multistructure XYZ (Thu Oct 28 2004 - 17:32:28 CDT)
- Re: multistructure XYZ (Thu Oct 28 2004 - 16:47:07 CDT)
- Re: multistructure XYZ (Thu Oct 28 2004 - 16:19:47 CDT)
- Re: Problems with povray (Tue Oct 26 2004 - 15:20:48 CDT)
- Re: error while loading shared libraries: libGLU.so.1 (Tue Oct 26 2004 - 13:43:49 CDT)
- Re: python2.3 and vmd (Tue Oct 26 2004 - 13:25:45 CDT)
- Re: python2.3 and vmd (Tue Oct 26 2004 - 13:18:13 CDT)
- Re: python2.3 and vmd (Tue Oct 26 2004 - 12:59:48 CDT)
- Re: error while loading shared libraries: libGLU.so.1 (Tue Oct 26 2004 - 12:38:06 CDT)
- Re: Defining graphics colors (Mon Oct 25 2004 - 14:33:57 CDT)
- Re: Problems with povray (Mon Oct 25 2004 - 14:01:21 CDT)
- Re: "same as" failing? (Mon Oct 25 2004 - 13:49:14 CDT)
- Re: python2.3 and vmd (Mon Oct 25 2004 - 13:37:31 CDT)
- Re: python2.3 and vmd (Mon Oct 25 2004 - 13:28:44 CDT)
- Re: question about electrostatic map visualizing (Mon Oct 25 2004 - 13:27:12 CDT)
- Re: outputing xyz coordinates of selection (Mon Oct 25 2004 - 13:25:50 CDT)
- Re: Problems with povray (Mon Oct 25 2004 - 13:15:43 CDT)
- Re: python2.3 and vmd (Fri Oct 22 2004 - 15:40:26 CDT)
- Re: python2.3 and vmd (Fri Oct 22 2004 - 13:49:56 CDT)
- Re: trajectory file with xyz (Fri Oct 22 2004 - 10:47:36 CDT)
- Re: python2.3 and vmd (Fri Oct 22 2004 - 10:43:56 CDT)
- Re: error while loading shared libraries: libGLU.so.1 (Thu Oct 21 2004 - 15:20:33 CDT)
- Re: error while loading shared libraries: libGLU.so.1 (Thu Oct 21 2004 - 13:35:23 CDT)
- Re: python2.3 and vmd (Thu Oct 21 2004 - 10:56:29 CDT)
- Re: xyz file (Wed Oct 20 2004 - 17:49:01 CDT)
- Re: selection of 2 molecules (Wed Oct 20 2004 - 14:32:47 CDT)
- Re: save states with relative directory structure (Wed Oct 20 2004 - 09:40:09 CDT)
- Re: xyz (Tue Oct 19 2004 - 18:41:03 CDT)
- Re: AutoIMD (Fri Oct 15 2004 - 16:36:38 CDT)
- Re: change color from script (Fri Oct 15 2004 - 10:44:47 CDT)
- Re: VMD on Linux Fedora Core 2 (Thu Oct 14 2004 - 21:30:29 CDT)
- Re: amd64/nvidiaFX1100/linux crash (Tue Oct 05 2004 - 16:50:30 CDT)
- Re: problem in autoionize (Thu Sep 30 2004 - 14:16:14 CDT)
- Re: Defining graphics colors (Thu Sep 30 2004 - 14:09:38 CDT)
- Re: docking (Wed Sep 29 2004 - 20:33:05 CDT)
- Re: Defining graphics colors (Wed Sep 29 2004 - 16:12:24 CDT)
- Re: Writing pdb files for trajectory frames (Wed Sep 29 2004 - 15:22:49 CDT)
- Re: Defining graphics colors (Wed Sep 29 2004 - 13:05:16 CDT)
- Re: Can we fix the position of two atoms while minimization? (Wed Sep 29 2004 - 12:40:52 CDT)
- Re: how can I get hole program (Wed Sep 29 2004 - 10:08:01 CDT)
- Re: Defining graphics colors (Wed Sep 29 2004 - 09:55:59 CDT)
- Re: problem in autoionize (Wed Sep 29 2004 - 09:37:19 CDT)
- Re: IMD Plugin Errors (Tue Sep 28 2004 - 15:01:04 CDT)
- Re: how can I get hole program (Tue Sep 28 2004 - 14:59:18 CDT)
- Re: Defining graphics colors (Tue Sep 28 2004 - 12:31:28 CDT)
- Re: How does VMD predict alpha helices (Tue Sep 28 2004 - 12:26:09 CDT)
- Re: Phosphate mass (Tue Sep 28 2004 - 09:55:29 CDT)
- Re: Python error (Mon Sep 27 2004 - 13:49:25 CDT)
- Re: tkcon problem with my vmd (Mon Sep 27 2004 - 13:21:24 CDT)
- Re: how to make a snapshot that... (Mon Sep 27 2004 - 09:29:40 CDT)
- Re: Updating atom names/types in xyz-files (Fri Sep 24 2004 - 10:57:41 CDT)
- Re: Hydrogen bond representation and cut off distance (Fri Sep 24 2004 - 10:51:02 CDT)
- Re: How do I set the color scale for beta? (Fri Sep 24 2004 - 10:06:15 CDT)
- Re: quitting VMD (Thu Sep 23 2004 - 13:22:48 CDT)
- Re: question about rendering images (Wed Sep 22 2004 - 17:07:11 CDT)
- Re: displaying neighboring residues (Wed Sep 22 2004 - 12:36:51 CDT)
- Re: superimposing frames (Wed Sep 22 2004 - 11:15:19 CDT)
- Re: problems with vecdist in accepting variables (Tue Sep 21 2004 - 16:40:26 CDT)
- Re: Quadro 750 XGL problem (Tue Sep 21 2004 - 09:56:16 CDT)
- Re: how to make a snapshot that... (Mon Sep 20 2004 - 16:35:03 CDT)
- Re: BUG with MODEL card in PDB file (Mon Sep 20 2004 - 16:02:12 CDT)
- Re: Phantom and VMD (Mon Sep 20 2004 - 15:58:40 CDT)
- Re: BUG with MODEL card in PDB file (Mon Sep 20 2004 - 15:39:29 CDT)
- Re: MSMS under Windows (Mon Sep 20 2004 - 15:37:30 CDT)
- Re: how to make a snapshot that... (Mon Sep 20 2004 - 15:18:47 CDT)
- Re: (Mon Sep 20 2004 - 13:26:17 CDT)
- Re: how to make a snapshot that... (Mon Sep 20 2004 - 13:23:14 CDT)
- Re: Quadro 750 XGL problem (Mon Sep 20 2004 - 09:44:11 CDT)
- Re: Sharp 3D stereo monitors (Mon Sep 20 2004 - 09:04:07 CDT)
- Re: Changing the atom species during animation (Wed Sep 15 2004 - 17:56:07 CDT)
- Away from email until Sunday... (Wed Sep 15 2004 - 17:48:55 CDT)
- Re: multiple entry mol2 file (Wed Sep 15 2004 - 16:45:38 CDT)
- Re: Solvate (Wed Sep 15 2004 - 13:23:15 CDT)
- Re: Getting started with VMD/freeVR (Wed Sep 15 2004 - 13:20:03 CDT)
- Re: New Athlon64/Opteron AMD64/EMT64 test version... (Tue Sep 14 2004 - 21:35:21 CDT)
- New Athlon64/Opteron AMD64/EMT64 test version... (Tue Sep 14 2004 - 16:49:29 CDT)
- Re: Default resource file (.vmdrc) (Mon Sep 13 2004 - 15:59:23 CDT)
- Re: error python (Mon Sep 13 2004 - 10:02:20 CDT)
- Re: Compiling NAMD from SRC: Tungsten@NCSA (Fri Sep 10 2004 - 20:16:25 CDT)
- Re: dynamic bonds question?? (Thu Sep 09 2004 - 17:38:07 CDT)
- Re: new user: how to load output file (Tue Sep 07 2004 - 16:27:38 CDT)
- Re: problem with memory (Tue Sep 07 2004 - 10:05:00 CDT)
- Re: thanks (Fri Sep 03 2004 - 16:26:44 CDT)
- Re: Slow file importing and movie generating in Linux system (Thu Sep 02 2004 - 12:37:07 CDT)
- Re: Slow file importing and movie generating at Linux system (Thu Sep 02 2004 - 11:24:43 CDT)
- Re: VMD-VRPN-PHANTOM problem ? (Thu Sep 02 2004 - 09:50:23 CDT)
- Re: VMD-VRPN-PHANTOM problem ? (Thu Sep 02 2004 - 01:32:22 CDT)
- Re: Slow file importing and movie generating at Linux system (Wed Sep 01 2004 - 21:10:37 CDT)
- Re: Extensions question (Wed Sep 01 2004 - 13:45:20 CDT)
- Re: xyz-file loading (Wed Sep 01 2004 - 13:14:24 CDT)
- Re: VMD on NetBSD (Wed Sep 01 2004 - 10:59:00 CDT)
- Re: VMD on NetBSD (Wed Sep 01 2004 - 09:37:17 CDT)
- Re: to get SURFACE CHARGE DISTRIBUTION of protein (Tue Aug 31 2004 - 15:35:15 CDT)
- Re: VMD on NetBSD (Tue Aug 31 2004 - 15:32:44 CDT)
- Re: python callbacks (Tue Aug 31 2004 - 15:26:21 CDT)
- Re: rmsd problem (Tue Aug 31 2004 - 15:11:47 CDT)
- Re: convert DCD files to GROMACS .XTC format (Tue Aug 31 2004 - 15:11:09 CDT)
- Re: VRML2 export and viewpoints (Tue Aug 31 2004 - 15:06:35 CDT)
- Re: g03 output and editing features for VMD (Mon Aug 30 2004 - 11:18:25 CDT)
- Re: VMD on NetBSD (Fri Aug 27 2004 - 17:21:39 CDT)
- Re: How to select water molecules within certain distance from a protein (Fri Aug 27 2004 - 15:27:01 CDT)
- Re: Re: Installation on vmd-1.8 on mandrake10 (Fri Aug 27 2004 - 10:13:41 CDT)
- Re: Re: Installation on vmd-1.8 on mandrake10 (Fri Aug 27 2004 - 09:28:48 CDT)
- Re: Weird lighting in CAVE (Thu Aug 26 2004 - 14:16:51 CDT)
- Re: Periodic display problem (Thu Aug 26 2004 - 14:04:59 CDT)
- Re: Slow file importing and movie generating at Linux system (Thu Aug 26 2004 - 14:12:03 CDT)
- Re: Installation on vmd-1.8 on mandrake10 (Thu Aug 26 2004 - 14:09:52 CDT)
- Re: VMD on NetBSD (Thu Aug 26 2004 - 14:07:43 CDT)
- Re: Molscript (Thu Aug 26 2004 - 14:06:04 CDT)
- Re: Periodic display problem (Wed Aug 25 2004 - 10:18:51 CDT)
- Re: Molscript (Wed Aug 25 2004 - 09:29:13 CDT)
- Re: ATI fglrx 3.11 drivers for Radeon 8500 LE with linux 2.6 kernel, quad buffered stereo on sony G520??? (Wed Aug 25 2004 - 09:23:09 CDT)
- Re: Periodic display problem (Tue Aug 24 2004 - 12:44:43 CDT)
- Re: Periodic display problem (Tue Aug 24 2004 - 10:13:25 CDT)
- Re: center of mass position (Tue Aug 24 2004 - 10:03:40 CDT)
- Re: monitoring h bonds (Tue Aug 24 2004 - 09:58:04 CDT)
- Re: Periodic display problem (Tue Aug 24 2004 - 09:29:15 CDT)
- Re: Molscript (Tue Aug 24 2004 - 09:41:23 CDT)
- Re: problem (Tue Aug 24 2004 - 09:33:01 CDT)
- Re: no main window (Tue Aug 24 2004 - 09:18:44 CDT)
- Re: monitoring h bonds (Mon Aug 23 2004 - 14:03:01 CDT)
- Re: Installer problem (Sat Aug 21 2004 - 12:20:36 CDT)
- Re: VMD too slow on my Linux system (Fri Aug 20 2004 - 14:06:23 CDT)
- Re: get average coord. from .pdb file? (Tue Aug 17 2004 - 13:13:49 CDT)
- Re: Calculate accessible surface area (Tue Aug 17 2004 - 13:12:05 CDT)
- Re: multiple entry mol2 file (Tue Aug 17 2004 - 12:56:43 CDT)
- Re: get average coord. from .pdb file? (Mon Aug 16 2004 - 15:01:31 CDT)
- Re: Calculate accessible surface area (Mon Aug 16 2004 - 14:12:02 CDT)
- Re: Plugins and did I compile VMD correctly? (Thu Aug 12 2004 - 18:13:01 CDT)
- Re: Plugins and did I compile VMD correctly? (Thu Aug 12 2004 - 16:14:01 CDT)
- Windows XP SP2 and some OpenGL drivers.... (Wed Aug 11 2004 - 15:35:03 CDT)
- Re: Slow down the update speed in animation (Tue Aug 10 2004 - 22:15:44 CDT)
- Re: VolumeSlice (Tue Aug 10 2004 - 16:41:24 CDT)
- Re: isosurface question (Tue Aug 10 2004 - 16:38:23 CDT)
- Re: Re: to load multiple trajectory files (Tue Aug 10 2004 - 13:27:16 CDT)
- Re: analysis scripts: VMD text /batch mode (Tue Aug 10 2004 - 13:03:22 CDT)
- Re: to load multiple trajectory files (Tue Aug 10 2004 - 10:52:44 CDT)
- Re: VideoMach/personable Label/label by ResName (Mon Aug 09 2004 - 23:27:28 CDT)
- Re: molecular surface/multiple trajectory files/the speed in animation (Mon Aug 09 2004 - 23:22:56 CDT)
- Re: molecular surface/multiple trajectory files/the speed in animation (Mon Aug 09 2004 - 16:17:12 CDT)
- Re: VideoMach/personable Label/label by ResName (Mon Aug 09 2004 - 16:10:23 CDT)
- Re: Changing the label for resname (Mon Aug 09 2004 - 16:06:46 CDT)
- Re: translating a molecule (Mon Aug 09 2004 - 10:11:45 CDT)
- Re: Trajectory Files (Mon Aug 09 2004 - 10:08:36 CDT)
- Re: CVS access is back online... (Fri Aug 06 2004 - 16:08:41 CDT)
- CVS access is back online... (Fri Aug 06 2004 - 10:12:15 CDT)
- Re: How to Solvate protiens in any other solvent (Wed Aug 04 2004 - 17:11:26 CDT)
- Re: Variable number of atoms in XYZ file format (Tue Aug 03 2004 - 14:57:35 CDT)
- Nightly VMD web updates running again... (Tue Aug 03 2004 - 10:20:37 CDT)
- Re: Loading a script (Mon Aug 02 2004 - 17:48:04 CDT)
- Re: CVS root directory not found (Mon Aug 02 2004 - 16:10:27 CDT)
- Re: readable files (Mon Aug 02 2004 - 15:50:33 CDT)
- Re: How to enable Python on Windows XP (Mon Aug 02 2004 - 10:00:44 CDT)
- Re: Error in modifying and concatenating two pdb files into one [plz Help!] (Mon Aug 02 2004 - 09:59:02 CDT)
- Re: 1.8.3 (Fri Jul 30 2004 - 14:33:35 CDT)
- Re: tcl: wait for exec (Thu Jul 29 2004 - 21:50:46 CDT)
- Re: movie showing loop movement (Thu Jul 29 2004 - 18:15:03 CDT)
- Re: GLXBadLargeRequest (Thu Jul 29 2004 - 18:14:05 CDT)
- Re: Rendering (Thu Jul 29 2004 - 17:54:11 CDT)
- Re: GLXBadLargeRequest (Thu Jul 29 2004 - 14:03:00 CDT)
- Re: stereo with GForce video board (Thu Jul 29 2004 - 10:58:05 CDT)
- Re: angles (Thu Jul 29 2004 - 10:53:38 CDT)
- Re: Compiling VMD (Thu Jul 29 2004 - 10:49:14 CDT)
- Re: your mail (Thu Jul 29 2004 - 10:46:44 CDT)
- Re: XYZ file to video (Wed Jul 28 2004 - 08:42:17 CDT)
- Re: Tachyon Internal Rendering (Mon Jul 26 2004 - 09:41:27 CDT)
- Re: FPS indicator color (Wed Jul 21 2004 - 11:12:48 CDT)
- Re: VMD slowdown on MacOS X 10.3.4 (Wed Jul 21 2004 - 10:31:29 CDT)
- Re: mol clipplane very slow (Wed Jul 21 2004 - 09:50:13 CDT)
- Re: VMD slowdown on MacOS X 10.3.4 (Tue Jul 20 2004 - 11:01:54 CDT)
- Re: FPS indicator color (Mon Jul 19 2004 - 11:35:36 CDT)
- Re: Axes are not rotated? (Mon Jul 19 2004 - 10:22:44 CDT)
- Re: FPS indicator color (Mon Jul 19 2004 - 10:16:20 CDT)
- Re: Picking atoms: romoving or changing the position of atoms (Mon Jul 19 2004 - 10:11:32 CDT)
- Re: File Reader Plugin Issues (Mon Jul 19 2004 - 10:07:45 CDT)
- Re: "Selection not understood" (Fri Jul 16 2004 - 13:18:59 CDT)
- Re: File Reader Plugin Issues (Fri Jul 16 2004 - 10:31:22 CDT)
- Re: Box of non-polar solvent (Fri Jul 16 2004 - 10:36:28 CDT)
- Re: Default radii and colors (Fri Jul 16 2004 - 10:12:01 CDT)
- Re: Elliptic molecules (Fri Jul 16 2004 - 10:09:06 CDT)
- Re: Elliptic molecules (Fri Jul 16 2004 - 00:58:02 CDT)
- Re: problems loading dcd files (Thu Jul 15 2004 - 13:58:24 CDT)
- Re: vmd psfgen problem with CHARMM (Thu Jul 15 2004 - 12:50:25 CDT)
- Re: Elliptic molecules (Thu Jul 15 2004 - 10:40:55 CDT)
- Re: vmd psfgen problem with CHARMM (Thu Jul 15 2004 - 10:58:58 CDT)
- Re: nvidia 6106 kernel drivers and opengl (Tue Jul 13 2004 - 21:00:36 CDT)
- Re: Updated Bonding Connectivity each frame (Tue Jul 13 2004 - 10:15:33 CDT)
- Re: polar surface area with VMD! (Mon Jul 12 2004 - 10:10:04 CDT)
- Re: coloring.tlc script (Fri Jul 09 2004 - 16:48:29 CDT)
- Re: Isosurface and stepsize (Fri Jul 09 2004 - 13:09:09 CDT)
- Re: vmd 1.8.3a7 no longer works after installing NVIDIA dr iver x86_64 -1.0-6106 (Thu Jul 08 2004 - 17:21:15 CDT)
- Re: vmd 1.8.3a7 no longer works after installing NVIDIA driver x86_64 -1.0-6106 (Thu Jul 08 2004 - 16:41:06 CDT)
- New and updated VMD plugins posted (update 4, 7/8/2004) (Thu Jul 08 2004 - 11:08:11 CDT)
- Re: I can not load mdcrd file after simulation with sander (Wed Jul 07 2004 - 14:16:33 CDT)
- Re: periodic display and space group and VMD (Tue Jul 06 2004 - 10:28:43 CDT)
- Re: (Mon Jul 05 2004 - 14:31:03 CDT)
- Re: problem with MSMS and VMD (Mon Jul 05 2004 - 14:18:33 CDT)
- Re: CONECT in pdb files (Mon Jul 05 2004 - 14:16:13 CDT)
- Re: mol clipplane (Mon Jul 05 2004 - 14:12:41 CDT)
- Re: suggested citation versus pubmed entry (Mon Jul 05 2004 - 13:58:31 CDT)
- Re: (Mon Jul 05 2004 - 13:57:46 CDT)
- Re: autostereograms in VMD? (Mon Jul 05 2004 - 13:52:38 CDT)
- Re: (Wed Jun 30 2004 - 17:16:57 CDT)
- Gone until July 6th. (Wed Jun 30 2004 - 15:59:08 CDT)
- Re: your mail (Wed Jun 30 2004 - 15:18:22 CDT)
- Re: your mail (Wed Jun 30 2004 - 14:05:36 CDT)
- Recent VMD-L mails, etc.. (Wed Jun 30 2004 - 13:40:21 CDT)
- Re: your mail (Wed Jun 30 2004 - 13:32:28 CDT)
- Re: Making movies (Wed Jun 30 2004 - 13:29:10 CDT)
- Re: isosurface question (Wed Jun 30 2004 - 13:04:29 CDT)
- Re: PBCWrap for Gromacs? (Tue Jun 29 2004 - 13:52:45 CDT)
- Re: drawing a plane (Tue Jun 29 2004 - 13:45:14 CDT)
- Re: Making movies (Tue Jun 29 2004 - 13:24:16 CDT)
- Re: PBCwrap: wrapping DCD files (Tue Jun 29 2004 - 13:20:48 CDT)
- Re: Making movies (Mon Jun 28 2004 - 15:32:30 CDT)
- Re: shifting the origin of the box (Mon Jun 28 2004 - 15:24:24 CDT)
- Re: wrapping DCD files (Mon Jun 28 2004 - 15:25:39 CDT)
- Re: isosurface question (Mon Jun 28 2004 - 15:11:03 CDT)
- Re: Making movies (Fri Jun 25 2004 - 17:54:33 CDT)
- Re: Transparency rendering (Fri Jun 25 2004 - 18:03:15 CDT)
- Re: mpeg doesn't run on media player (Fri Jun 25 2004 - 17:50:10 CDT)
- VMD/NAMD downloads, web site status (Fri Jun 25 2004 - 17:16:37 CDT)
- Re: Making movies (Tue Jun 22 2004 - 16:49:18 CDT)
- Re: incompatibility between VMD & NAMD for reading Amber crd files (Mon Jun 21 2004 - 14:53:13 CDT)
- Re: Animate the "beta" field (Mon Jun 21 2004 - 14:17:38 CDT)
- Re: draw lines (Mon Jun 21 2004 - 14:02:54 CDT)
- Re: labeling a residue (Mon Jun 21 2004 - 13:59:02 CDT)
- Re: thank you! (Mon Jun 21 2004 - 13:33:18 CDT)
- Re: incompatibility between VMD & NAMD for reading Amber crd files (Mon Jun 21 2004 - 09:58:31 CDT)
- Test version of VMD for flaky graphics boards/drivers (Fri Jun 18 2004 - 15:53:18 CDT)
- Re: Vmd 1.8.1 or 1.8.2 on Linux not starting text interpreter (Fri Jun 18 2004 - 11:23:11 CDT)
- Re: opening VMD on OSX (Fri Jun 18 2004 - 11:08:59 CDT)
- Re: visualizing trr files (Fri Jun 18 2004 - 10:24:54 CDT)
- Re: Vmd 1.8.1 or 1.8.2 on Linux not starting text interpreter (Thu Jun 17 2004 - 16:01:18 CDT)
- Re: problem with tool command (Wed Jun 16 2004 - 10:12:50 CDT)
- Re: Vmd 1.8.1 or 1.8.2 on Linux not starting text interpreter (Wed Jun 16 2004 - 09:26:33 CDT)
- Re: word too long (Wed Jun 16 2004 - 09:08:08 CDT)
- Re: base plane not being filled in for terminal adenines in ribbons/new ribbons (Tue Jun 15 2004 - 14:38:30 CDT)
- Re: vmdnumpy ? (IED 2.0 on MacOS X /w VMD 1.8.2) (Tue Jun 15 2004 - 13:45:47 CDT)
- Re: vmdnumpy ? (IED 2.0 on MacOS X /w VMD 1.8.2) (Fri Jun 11 2004 - 16:28:44 CDT)
- Re: vmdnumpy ? (IED 2.0 on MacOS X /w VMD 1.8.2) (Fri Jun 11 2004 - 14:33:34 CDT)
- Re: Need a few testers for Linux version of VMD 1.8.3... (Fri Jun 11 2004 - 11:10:15 CDT)
- Need a few testers for Linux version of VMD 1.8.3... (Fri Jun 11 2004 - 10:33:55 CDT)
- Re: "measure fit" inaccuracy? (Fri Jun 11 2004 - 10:16:03 CDT)
- Re: rmsd option in timeline (Fri Jun 11 2004 - 09:20:50 CDT)
- Re: xyz file format (Fri Jun 11 2004 - 09:16:53 CDT)
- Re: "measure fit" inaccuracy? (Fri Jun 11 2004 - 09:04:43 CDT)
- Re: xyz file format (Wed Jun 09 2004 - 14:06:24 CDT)
- Re: vmd-1.8.2, Spaceball and FC2 (Mon Jun 07 2004 - 14:21:20 CDT)
- Re: Van der Waal's radii of atoms (Thu Jun 03 2004 - 17:00:32 CDT)
- Re: Little problem with VolumeSlice (Thu Jun 03 2004 - 15:28:50 CDT)
- Re: Torsional Angles (Mon May 31 2004 - 12:44:40 CDT)
- Re: Torsional Angles (Mon May 31 2004 - 12:40:22 CDT)
- Re: vmd and Konqueror web browser under Suse 9? (Mon May 31 2004 - 12:28:35 CDT)
- Re: Pore volume/radius in protein bundles (Fri May 28 2004 - 19:10:15 CDT)
- Re: vmd1.8.2 on laptop (Thu May 27 2004 - 10:31:55 CDT)
- Re: How to read i8(64 bit) .crd file with 32 bit VMD (Sun May 23 2004 - 15:40:35 CDT)
- Re: analysis of energy with water excluded from dcd file (Sun May 23 2004 - 15:46:26 CDT)
- Re: How to read i8(64 bit) .crd file with 32 bit VMD (Sat May 22 2004 - 19:45:39 CDT)
- Re: Help about Contact Map plugin (Sat May 22 2004 - 00:25:19 CDT)
- Re: python disabled (still?) (Sat May 22 2004 - 00:31:39 CDT)
- Re: changing the representation of all loaded molecules (Thu May 20 2004 - 09:13:35 CDT)
- Re: VMD-1.8.2 OpenGL Shader Extns. and Chromium (Wed May 19 2004 - 23:47:05 CDT)
- Re: some visualization challenges (Tue May 18 2004 - 09:21:44 CDT)
- Re: displaying tube/ribbon with varying diameter ? (Tue May 18 2004 - 08:56:09 CDT)
- Re: some visualization challenges (Tue May 18 2004 - 00:58:22 CDT)
- Re: some visualization challenges (Sun May 16 2004 - 20:25:59 CDT)
- Re: dcd to coor files (Sat May 15 2004 - 14:08:20 CDT)
- Re: unit of force using Haptic during IMD (Fri May 14 2004 - 10:33:10 CDT)
- Re: high resolution ps or eps picture (Wed May 12 2004 - 20:26:54 CDT)
- Re: Compile from Source Crashes 5/11/04 (Wed May 12 2004 - 18:41:32 CDT)
- Re: tkCon window - how to make font bigger? (Wed May 12 2004 - 14:24:24 CDT)
- Re: vmd 1.8.2 - slow on linux (Wed May 12 2004 - 14:13:31 CDT)
- Re: Surface - upper limit for number of coordinates? (Wed May 12 2004 - 14:18:15 CDT)
- Re: vmd 1.8.2 - slow on linux (Tue May 11 2004 - 14:19:15 CDT)
- Re: Surface rendering crashes PC (Tue May 11 2004 - 13:10:40 CDT)
- Re: Surface - upper limit for number of coordinates? (Tue May 11 2004 - 10:06:48 CDT)
- Re: How to make VMD to work with Phantom Haptic Device (Tue May 11 2004 - 09:41:54 CDT)
- Re: vmd 1.8.2 - slow on linux (Tue May 11 2004 - 09:01:06 CDT)
- Re: trouble loading dcd files (Sun May 09 2004 - 08:24:25 CDT)
- Re: VMD: Potential Energy Calculation (Fri May 07 2004 - 09:30:26 CDT)
- Re: how to look for overlaps? (Thu May 06 2004 - 21:51:27 CDT)
- Re: Stereo on Mac OX 10.3.3 (Thu May 06 2004 - 21:53:39 CDT)
- Re: core when using some features of vmd-xplor (Thu May 06 2004 - 16:45:02 CDT)
- Re: VMD: Potential Energy Calculation (Thu May 06 2004 - 10:15:39 CDT)
- Re: variable atom number and dynamic bonds (Wed May 05 2004 - 16:58:03 CDT)
- ATI 3.7.6 driver bugs (and VMD..) (Wed May 05 2004 - 16:46:01 CDT)
- Re: variable atom number and dynamic bonds (Wed May 05 2004 - 15:49:55 CDT)
- Re: Coloring with an XYZ file (Wed May 05 2004 - 01:18:01 CDT)
- Re: script problem (Fri Apr 30 2004 - 16:02:12 CDT)
- Re: Re: namd-l: dcd files generated with catdcd (Fri Apr 30 2004 - 12:47:59 CDT)
- Re: Amber periodic images (Thu Apr 29 2004 - 13:52:17 CDT)
- Re: Amber periodic images (Thu Apr 29 2004 - 13:49:52 CDT)
- Re: Amber periodic images (Thu Apr 29 2004 - 10:56:26 CDT)
- Re: MOE discussion (Wed Apr 28 2004 - 17:03:31 CDT)
- Re: Rendering of screen/display different (Tue Apr 27 2004 - 00:26:28 CDT)
- Re: coloring selection (Mon Apr 26 2004 - 18:27:50 CDT)
- Re: Bond display and Periodic Boxes (Mon Apr 26 2004 - 17:51:03 CDT)
- Re: Rendering of screen/display different (Mon Apr 26 2004 - 11:58:41 CDT)
- Re: (Sat Apr 24 2004 - 15:41:39 CDT)
- Re: Rendering of screen/display different (Fri Apr 23 2004 - 10:53:51 CDT)
- Re: Rendering of screen/display different (Thu Apr 22 2004 - 15:59:02 CDT)
- Re: Help in VMD (Thu Apr 22 2004 - 10:29:50 CDT)
- Re: error with top2psf (Wed Apr 21 2004 - 13:40:22 CDT)
- Re: Amber trajectory loading (Wed Apr 21 2004 - 13:22:49 CDT)
- Re: Rendering of screen/display different (Wed Apr 21 2004 - 10:51:57 CDT)
- Re: python 2.3 (Tue Apr 20 2004 - 15:02:25 CDT)
- Re: Add H-atoms to Pdb file for NMR (Tue Apr 20 2004 - 15:06:59 CDT)
- Re: xyz plugin (Tue Apr 20 2004 - 09:37:19 CDT)
- Re: file type specification question (Mon Apr 19 2004 - 18:06:03 CDT)
- Re: vmd linux binary / native build on netbsd (Mon Apr 19 2004 - 17:08:18 CDT)
- Re: top2psf (Mon Apr 19 2004 - 11:51:14 CDT)
- Re: xyz plugin (Mon Apr 19 2004 - 11:49:49 CDT)
- Updated plugins for VMD 1.8.2 (Mon Apr 19 2004 - 10:34:55 CDT)
- Re: VMD Bug ? (Mon Apr 19 2004 - 09:38:36 CDT)
- Re: Webpdb crashing (Sun Apr 18 2004 - 19:48:23 CDT)
- Re: file type specification question (Sun Apr 18 2004 - 19:44:40 CDT)
- Re: how to make whole biological unit / virus capsid from pdb BIOMT records (Sun Apr 18 2004 - 19:29:30 CDT)
- Re: move molecule using tcl (Sun Apr 18 2004 - 19:24:40 CDT)
- Re: Re: how to make unique chain pdb identifier of virus capsid 60 mer? (Sun Apr 18 2004 - 19:34:43 CDT)
- Re: Required Assistance for VMD (Sun Apr 18 2004 - 12:19:19 CDT)
- Re: Webpdb crashing (Fri Apr 16 2004 - 13:27:44 CDT)
- Re: your mail (Thu Apr 15 2004 - 16:24:29 CDT)
- Re: Viewing MD trajectories (Tue Apr 13 2004 - 16:44:44 CDT)
- Re: file type specification question (Tue Apr 13 2004 - 16:05:56 CDT)
- Re: Viewing MD trajectories (Tue Apr 13 2004 - 15:59:32 CDT)
- Re: Viewing MD trajectories (Tue Apr 13 2004 - 15:12:08 CDT)
- Re: file type specification question (Tue Apr 13 2004 - 14:23:17 CDT)
- Re: xyz aluminium connectivity questions (Tue Apr 13 2004 - 13:42:52 CDT)
- Re: could not make avi file (Tue Apr 13 2004 - 13:33:33 CDT)
- Re: (Mon Apr 12 2004 - 21:59:15 CDT)
- Re: Viewing MD trajectories (Fri Apr 09 2004 - 20:12:46 CDT)
- Re: Typing Au(111) surface (Fri Apr 09 2004 - 10:00:14 CDT)
- Re: mapping delphi potential maps on surfaces (Thu Apr 08 2004 - 17:49:37 CDT)
- Re: making ps files (Thu Apr 08 2004 - 17:41:29 CDT)
- Re: question about the definition of secondary motiffs (Thu Apr 08 2004 - 16:57:13 CDT)
- Re: mapping delphi potential maps on surfaces (Thu Apr 08 2004 - 16:48:43 CDT)
- Re: file type specification question (Thu Apr 08 2004 - 16:53:04 CDT)
- Re: Typing Au(111) surface (Thu Apr 08 2004 - 16:50:46 CDT)
- Re: file type specification question (Wed Apr 07 2004 - 15:32:42 CDT)
- Re: drawing poligons (Tue Apr 06 2004 - 09:57:04 CDT)
- Re: how to make whole biological unit / virus capsid from pdb BIOMT records (Tue Apr 06 2004 - 09:59:56 CDT)
- Re: how to make whole biological unit / virus capsid from pdb BIOMT records (Mon Apr 05 2004 - 14:11:45 CDT)
- Re: startup failure (Fri Apr 02 2004 - 19:19:28 CST)
- Re: VMD shows bad structure with 'line' type (Fri Apr 02 2004 - 10:36:41 CST)
- Re: startup failure (Thu Apr 01 2004 - 17:33:35 CST)
- Re: animating drawn objects (Thu Apr 01 2004 - 13:26:17 CST)
- Re: about dynamical change color of atoms (Thu Apr 01 2004 - 12:57:33 CST)
- Re: how to save coordinates after moving molecule in VMD? (Thu Apr 01 2004 - 11:08:11 CST)
- Re: how to save coordinates after moving molecule in VMD? (Thu Apr 01 2004 - 10:40:51 CST)
- Re: configure do nothing in Linux(???) (Wed Mar 31 2004 - 10:20:28 CST)
- Re: Molecular ruler ? (Tue Mar 30 2004 - 15:18:25 CST)
- Re: Molecular ruler ? (Tue Mar 30 2004 - 11:28:00 CST)
- Re: Stereo projection ? (Mon Mar 29 2004 - 19:44:51 CST)
- Re: residence time (Wed Mar 24 2004 - 16:01:07 CST)
- Re: xyz to psf (Wed Mar 24 2004 - 15:47:03 CST)
- New and updated plugins for VMD 1.8.2 posted (Wed Mar 24 2004 - 15:17:29 CST)
- Re: .cshrc error prevents VMD working on OSX10.3.3??? or something else??? (Tue Mar 23 2004 - 10:54:22 CST)
- Re: VMD1.82 version with MacOS10.3.3 Problem solved (Tue Mar 23 2004 - 09:48:35 CST)
- Re: Periodic Images (Mon Mar 22 2004 - 11:40:42 CST)
- Re: coloring method User (Mon Mar 22 2004 - 11:45:35 CST)
- Re: Re: msms and vmd on amd athlon64. (Mon Mar 22 2004 - 11:21:55 CST)
- Re: coloring method User (Mon Mar 22 2004 - 11:18:35 CST)
- Re: VMD1.82 version with MacOS10.3.3 DO NOT WORK (Mon Mar 22 2004 - 10:03:24 CST)
- Re: HOLE output visualization (Mon Mar 22 2004 - 10:16:37 CST)
- Re: VMD1.82 version with MacOS10.3.3 DO NOT WORK (Mon Mar 22 2004 - 09:50:25 CST)
- Re: dcd with fixed atoms (Thu Mar 18 2004 - 19:31:16 CST)
- Re: Black & white VMD in CAVE? (Thu Mar 18 2004 - 11:02:10 CST)
- VMD-L digests available (Wed Mar 17 2004 - 18:01:56 CST)
- Re: dcd with fixed atoms (Wed Mar 17 2004 - 10:13:00 CST)
- Re: digest form (Wed Mar 17 2004 - 10:06:24 CST)
- Re: density profile (Tue Mar 16 2004 - 18:49:27 CST)
- Fwd: Announce: STRAP (Tue Mar 16 2004 - 16:06:47 CST)
- Re: loading PDB+PSF (Tue Mar 16 2004 - 12:46:46 CST)
- Re: How to make VMD work with Phantom haptic device? (Tue Mar 16 2004 - 10:33:33 CST)
- Re: digest form (Tue Mar 16 2004 - 10:09:07 CST)
- Re: Formation of a gold layer (Tue Mar 16 2004 - 10:24:23 CST)
- Re: loading PDB+PSF (Tue Mar 16 2004 - 09:55:55 CST)
- Suggestions on sending VMD bug reports/questions, etc... (Mon Mar 15 2004 - 14:09:51 CST)
- Re: Solvate Package (Mon Mar 15 2004 - 13:55:29 CST)
- Re: Rotatind a chain (some further Qs) (Mon Mar 15 2004 - 13:49:01 CST)
- Re: change location of temporay file storage (Win2k) (Mon Mar 15 2004 - 13:53:02 CST)
- Re: msms and vmd on amd athlon64. (Mon Mar 15 2004 - 12:58:52 CST)
- Re: msms and socketPort (Fri Mar 12 2004 - 17:06:36 CST)
- Re: Rotatind a chainn (Fri Mar 12 2004 - 12:46:47 CST)
- Re: is VMD compatible with NVIDIA 3D stereo drivers ? (Fri Mar 12 2004 - 10:56:37 CST)
- Re: msms and socketPort (Fri Mar 12 2004 - 10:11:26 CST)
- Re: gromos96 files (Thu Mar 11 2004 - 14:35:03 CST)
- Re: coloring of trajectory (Thu Mar 11 2004 - 14:29:47 CST)
- Re: Coloring based on POS (Thu Mar 11 2004 - 10:16:19 CST)
- Re: VMD as command line interface (Thu Mar 11 2004 - 09:59:51 CST)
- Re: gromos96 files (Wed Mar 10 2004 - 15:56:08 CST)
- Re: coloring of trajectory (Wed Mar 10 2004 - 11:19:55 CST)
- Re: hydrophobic surface area calculation (Mon Mar 08 2004 - 17:38:54 CST)
- Re: your mail (Mon Mar 08 2004 - 17:20:52 CST)
- Re: Problems with RMSD (Mon Mar 08 2004 - 17:31:26 CST)
- Re: your mail athlon 64/opteron VMD (Mon Mar 08 2004 - 17:41:17 CST)
- Re: unusual bonds (Mon Mar 08 2004 - 17:28:46 CST)
- Re: rotating a representation (Mon Mar 08 2004 - 16:38:18 CST)
- Re: gziped files (Mon Mar 08 2004 - 14:33:41 CST)
- Re: numeric python (Mon Mar 08 2004 - 10:17:18 CST)
- Re: How to make VMD work with Phantom haptic device? (Mon Mar 08 2004 - 10:14:42 CST)
- Re: your mail (Sat Mar 06 2004 - 13:05:07 CST)
- Re: athlon64 version of vmd (Fri Mar 05 2004 - 17:39:47 CST)
- Updated plugins for VMD 1.8.x (Fri Mar 05 2004 - 13:23:45 CST)
- Re: passive stereo setup on linux (Thu Mar 04 2004 - 13:11:00 CST)
- Re: Non-serious query (Thu Mar 04 2004 - 10:54:22 CST)
- Re: color problem with Ati Fire GL E1 (Wed Mar 03 2004 - 21:02:04 CST)
- Re: passive stereo setup on linux (Wed Mar 03 2004 - 14:50:20 CST)
- Re: Non-serious query (Wed Mar 03 2004 - 13:20:30 CST)
- Re: Using VMD for non-atomic simulations? (Wed Mar 03 2004 - 10:03:13 CST)
- Re: Color error on loading (Wed Mar 03 2004 - 09:58:20 CST)
- Re: Color error on loading (Tue Mar 02 2004 - 17:24:45 CST)
- Re: passive stereo setup on linux (Tue Mar 02 2004 - 12:48:17 CST)
- Re: Using VMD with Chromium (Tue Mar 02 2004 - 09:56:59 CST)
- Re: passive stereo setup on linux (Mon Mar 01 2004 - 18:53:27 CST)
- Re: passive stereo setup on linux (Mon Mar 01 2004 - 18:54:17 CST)
- Re: Using VMD with Chromium (Mon Mar 01 2004 - 09:51:04 CST)
- Re: I've tried latest vmd but still problems with mdcrd/crd/rst parser (Fri Feb 27 2004 - 14:07:28 CST)
- Re: atomselect within (Wed Feb 25 2004 - 13:28:37 CST)
- Re: vmd on ppc (G4) (Mon Feb 23 2004 - 16:30:39 CST)
- Test version of VMD 1.8.3 for Linux on AMD x86_64 (Athlon64 / Opteron) available... (Mon Feb 23 2004 - 14:14:33 CST)
- Re: Stationary labels; delays ("wait") in scripts (Mon Feb 23 2004 - 13:18:57 CST)
- Re: add a new color (Mon Feb 23 2004 - 11:07:41 CST)
- Re: Rama plot (Mon Feb 23 2004 - 10:58:56 CST)
- Re: Compiling vmd for ppc linux (Fri Feb 20 2004 - 16:23:33 CST)
- Re: ca contact map (Tue Feb 17 2004 - 10:40:01 CST)
- Re: Customizing vdw radius (Tue Feb 17 2004 - 10:32:22 CST)
- Re: veclength (Mon Feb 16 2004 - 23:56:13 CST)
- Re: your mail (Mon Feb 16 2004 - 22:19:55 CST)
- Re: Some pdb file contains many frames : How Can I retrieve all in a frame... (Mon Feb 16 2004 - 17:25:36 CST)
- Re: repitition of residue numbers in LIPIDS (Mon Feb 16 2004 - 17:45:08 CST)
- Re: duplicate atom coordinates in PDB files (Mon Feb 16 2004 - 15:10:06 CST)
- VMD-L downtime Feb 18/19... (Mon Feb 16 2004 - 15:21:14 CST)
- Re: Some pdb file contains many frames : How Can I retrieve all in a frame... (Mon Feb 16 2004 - 11:50:58 CST)
- Re: missing RMSD tool in extensions menu (Sat Feb 14 2004 - 01:28:56 CST)
- Re: removing surrounding water molecules (Fri Feb 13 2004 - 17:40:24 CST)
- Re: Problems with graphics.color function under VMD's python interpreter (Fri Feb 13 2004 - 17:43:27 CST)
- Re: Some pdb file contains many frames : How Can I retrieve all in a frame... (Fri Feb 13 2004 - 11:31:34 CST)
- Re: Apple VMD not showing gro file properly (Fri Feb 13 2004 - 10:52:02 CST)
- Re: solvating lipid bilayers (Thu Feb 12 2004 - 17:17:19 CST)
- Re: Apple VMD not showing gro file properly (Thu Feb 12 2004 - 17:22:02 CST)
- Re: stripping off oxygen groups (Thu Feb 12 2004 - 16:49:01 CST)
- Re: Where can I read the specifications on molecular file formats? (Thu Feb 12 2004 - 00:51:08 CST)
- Re: any body else have VMD problems with Linux + ATI FireGL X1-256p + fglrx-glc22-4.3.0-3.7.0 (Wed Feb 11 2004 - 20:02:26 CST)
- Re: New stage? (Wed Feb 11 2004 - 18:57:25 CST)
- Re: attempting to source a script (Wed Feb 11 2004 - 18:39:41 CST)
- Re: xyz files and VMD 1.8.2 (Wed Feb 11 2004 - 18:49:54 CST)
- Re: any body else have VMD problems with Linux + ATI FireGL X1-256p + fglrx-glc22-4.3.0-3.7.0 (Wed Feb 11 2004 - 18:33:51 CST)
- Re: Apple VMD not showing gro file properly (Tue Feb 10 2004 - 09:56:58 CST)
- Re: experience using VMD with 3-D printers? (Mon Feb 09 2004 - 10:49:31 CST)
- Re: Densities for protein and ligand (Fri Feb 06 2004 - 13:56:17 CST)
- Re: Error loading .cor files from CHARMM using dcd (Wed Feb 04 2004 - 13:02:45 CST)
- Re: How to install VMD on AIX5 OpenGL server (Wed Feb 04 2004 - 13:06:43 CST)
- Re: random graphics outages on startup (Wed Feb 04 2004 - 10:42:19 CST)
- Re: few colors in new ribbons representation - raytrace output (Sat Jan 31 2004 - 16:47:43 CST)
- fwd [Re: Does VMD support LES simulations?] (Fri Jan 30 2004 - 13:10:34 CST)
- VMD-L mail delivery rate... was Re: test (Fri Jan 30 2004 - 10:02:45 CST)
- Re: Does VMD support LES simulations? (Fri Jan 30 2004 - 01:26:48 CST)
- Re: few colors in new ribbons representation - raytrace output (Fri Jan 30 2004 - 00:57:40 CST)
- Re: few colors in new ribbons representation - raytrace output (Thu Jan 29 2004 - 20:21:53 CST)
- Re: an arrow for a dipole (Wed Jan 28 2004 - 18:26:45 CST)
- Re: Perspective Ratio Problems (Wed Jan 28 2004 - 14:59:21 CST)
- Re: OpenGL library loading (Tue Jan 27 2004 - 16:31:56 CST)
- Re: surf for mac (Tue Jan 27 2004 - 15:32:11 CST)
- Re: OpenGL library loading (Tue Jan 27 2004 - 15:20:56 CST)
- Re: OpenGL library loading (Tue Jan 27 2004 - 13:04:08 CST)
- Re: surf for mac (Mon Jan 26 2004 - 16:38:59 CST)
- Re: OpenGL library loading (Thu Jan 22 2004 - 16:13:37 CST)
- Re: about frame (Tue Jan 20 2004 - 10:50:37 CST)
- Re: How to install VMD on AIX5 OpenGL server (Tue Jan 20 2004 - 10:44:30 CST)
- Re: docking in VMD (Mon Jan 19 2004 - 07:54:36 CST)
- Re: Hi (Sun Jan 18 2004 - 23:44:30 CST)
- Re: Hybond calulator and display (Fri Jan 16 2004 - 13:07:09 CST)
- Re: solvate function (Sat Jan 10 2004 - 17:33:36 CST)
- Re: Question about Python and Mac osx (Sat Jan 10 2004 - 17:32:00 CST)
- Re: PBC (Tue Jan 06 2004 - 18:27:10 CST)
- Re: PBC (Tue Jan 06 2004 - 18:25:44 CST)
- Re: VMD 1.8.2 on MacOS 10.3 (Tue Jan 06 2004 - 01:30:26 CST)
- Re: dcd reading error (Sat Jan 03 2004 - 21:35:03 CST)
- Re: dcd reading error (Fri Jan 02 2004 - 14:34:07 CST)
- Re: Cartoon representation for large molecules (Fri Jan 02 2004 - 13:29:32 CST)
- Re: dcd reading error (Fri Jan 02 2004 - 13:05:17 CST)
- Re: vmd and msms for mac (Mon Dec 22 2003 - 11:29:25 CST)
- Re: graphics display works sometimes (Tue Dec 16 2003 - 23:07:43 CST)
- Re: CHARMM CRD files: COR plugin (Tue Dec 16 2003 - 21:02:57 CST)
- Re: movie making in batch mode (Tue Dec 16 2003 - 20:47:04 CST)
- Re: ACTC Triangle Consolidation (Fri Dec 12 2003 - 14:32:00 CST)
- Re: ACTC Triangle Consolidation (Fri Dec 12 2003 - 10:06:50 CST)
- Re: Different number of atoms trajectory frames (Thu Dec 11 2003 - 10:41:34 CST)
- Re: remote display (Thu Dec 11 2003 - 10:39:01 CST)
- Re: Different number of atoms trajectory frames (Thu Dec 11 2003 - 10:12:35 CST)
- Re: .psf and .params files for IMD (Thu Dec 11 2003 - 10:15:30 CST)
- Re: New version very slow?... me too (Wed Dec 10 2003 - 09:49:14 CST)
- Re: stride error (Wed Dec 10 2003 - 00:42:08 CST)
- Re: New version very slow? (Wed Dec 10 2003 - 00:07:59 CST)
- Re: your mail (Mon Dec 08 2003 - 23:58:26 CST)
- Announce: VMD 1.8.2 released!! (Fri Dec 05 2003 - 14:53:13 CST)
- Re: vmd crashes after startup... (Wed Dec 03 2003 - 18:44:26 CST)
- Re: Stride problems in XP.... (Tue Dec 02 2003 - 13:41:03 CST)
- Re: Matching electron density map and PDB (Mon Dec 01 2003 - 17:27:09 CST)
- Re: MSMS probe radius and CHARMM VDW radii (Mon Dec 01 2003 - 15:37:46 CST)
- Re: periodic box lines (Mon Dec 01 2003 - 12:43:36 CST)
- Re: draw multiple frames (Mon Dec 01 2003 - 12:16:16 CST)
- Re: vmdmovie in OS X.3 (Tue Nov 25 2003 - 15:51:28 CST)
- Re: Running VTK from VMD's python (Tue Nov 25 2003 - 13:52:55 CST)
- Re: vmdmovie in OS X.3 (Mon Nov 24 2003 - 21:07:12 CST)
- Re: vmdmovie in OS X.3 (Mon Nov 24 2003 - 18:51:01 CST)
- Re: about command readpdb? (Mon Nov 24 2003 - 14:14:21 CST)
- Re: Running VTK from VMD's python (Fri Nov 21 2003 - 17:51:02 CST)
- Re: Naming in XmGrace (Thu Nov 20 2003 - 09:51:04 CST)
- Re: (Wed Nov 19 2003 - 10:36:55 CST)
- Re: (Wed Nov 19 2003 - 10:22:01 CST)
- Re: Rodlike mixture (Wed Nov 19 2003 - 10:27:33 CST)
- Re: x-plor map file and readedm (Tue Nov 18 2003 - 14:54:13 CST)
- Updated VMD-L archive page... (Tue Nov 18 2003 - 13:10:07 CST)
- Re: Naming in XmGrace (Tue Nov 18 2003 - 10:05:04 CST)
- Re: subscribe and questions (Fri Nov 14 2003 - 14:45:33 CST)
- Re: send data on demand using IMD? (Fri Nov 14 2003 - 10:24:05 CST)
- Re: POV-Ray (Wed Nov 12 2003 - 17:23:27 CST)
- Re: unit cell (Wed Nov 12 2003 - 17:21:32 CST)
- Re: Highlighting nearest atom ? (wrt to a tool) (Wed Nov 12 2003 - 10:27:19 CST)
- Re: Highlighting nearest atom ? (wrt to a tool) (Tue Nov 11 2003 - 17:40:47 CST)
- Re: stereo problem and VMD 1.8.2beta5 (Tue Nov 11 2003 - 15:36:04 CST)
- Re: x-plor map file and readedm (Tue Nov 11 2003 - 10:56:28 CST)
- Re: unit cell (Mon Nov 10 2003 - 16:44:22 CST)
- Re: POV-Ray (Mon Nov 10 2003 - 13:17:30 CST)
- Re: VMD 1.8.1 MacOSX running very slow on new G4 1 GHz Powerbook (Mon Nov 10 2003 - 11:13:26 CST)
- Re: Running VTK from VMD's python (Mon Nov 10 2003 - 11:01:04 CST)
- Re: running vmd in batch mode (Thu Nov 06 2003 - 19:26:27 CST)
- Re: running vmd in batch mode (Thu Nov 06 2003 - 17:28:49 CST)
- Re: Running VTK from VMD's python (Thu Nov 06 2003 - 16:50:53 CST)
- Re: Calculating angles between subunits (Thu Nov 06 2003 - 16:10:35 CST)
- Re: VMD and Mandrake Linux 9.1 (Thu Nov 06 2003 - 15:34:46 CST)
- Re: (Thu Nov 06 2003 - 09:26:23 CST)
- Re: Re: making movie on Mac OSX (Tue Nov 04 2003 - 13:16:25 CST)
- Re: Re: loading MD trajectories (Tue Nov 04 2003 - 13:18:33 CST)
- Re: installation problem (Tue Nov 04 2003 - 10:47:44 CST)
- Re: stereo projection, Mac (Mon Nov 03 2003 - 17:00:12 CST)
- Re: VMD and chromium (Mon Nov 03 2003 - 15:47:03 CST)
- Re: VMD and chromium (Fri Oct 31 2003 - 16:14:52 CST)
- Re: secondary structure update (Fri Oct 31 2003 - 12:37:52 CST)
- Re: Radeon FireGL drivers crash VMD (Fri Oct 31 2003 - 09:47:36 CST)
- Re: secondary structure update (Fri Oct 31 2003 - 09:45:07 CST)
- Re: Radeon FireGL drivers crash VMD (Fri Oct 31 2003 - 09:41:48 CST)
- Re: VMD and Chromium (Thu Oct 30 2003 - 15:22:14 CST)
- Updated plugins for VMD 1.8.1... (Thu Oct 30 2003 - 14:46:09 CST)
- Re: VMD and Chromium (Thu Oct 30 2003 - 13:51:51 CST)
- Re: How to improve the running of VMD with data on remote servers (Thu Oct 30 2003 - 13:26:15 CST)
- Re: VMD and Chromium (Thu Oct 30 2003 - 13:28:30 CST)
- Re: Running VTK from VMD's python (Thu Oct 30 2003 - 10:42:15 CST)
- Re: coloring by charge (Wed Oct 29 2003 - 13:46:01 CST)
- Re: Measuring distances between two sets of atoms in a dcd file (Tue Oct 28 2003 - 14:18:12 CST)
- Re: How to improve the running of VMD with data on remote servers (Tue Oct 28 2003 - 08:57:08 CST)
- Re: getting ramachandran plots with VMD (Mon Oct 27 2003 - 15:50:51 CST)
- Re: Calculating angles between subunits (Fri Oct 24 2003 - 19:11:25 CDT)
- Re: VDW radii in input files (Fri Oct 24 2003 - 19:27:32 CDT)
- Re: Viewing Amber6 trajectory with VMD 1.8.1 (Fri Oct 24 2003 - 19:05:32 CDT)
- Re: Bond drawing questino (Fri Oct 24 2003 - 18:51:59 CDT)
- Re: vmd 1.8 Linux mesa on RedHat (Fri Oct 24 2003 - 16:46:04 CDT)
- Re: VMD 1.8.1 MacOSX running very slow on new G4 1 GHz Powerbook (Thu Oct 23 2003 - 16:14:49 CDT)
- Re: VMD and XP (Thu Oct 23 2003 - 09:47:29 CDT)
- Re: VMD 1.8.1 MacOSX running very slow on new G4 1 GHz Powerbook (Thu Oct 23 2003 - 09:46:37 CDT)
- Re: VMD and Chromium (Thu Oct 23 2003 - 02:32:50 CDT)
- Re: VMD and XP (Wed Oct 22 2003 - 17:35:10 CDT)
- Re: ribbon representation :: VRML (Tue Oct 21 2003 - 15:43:26 CDT)
- Re: vmd 1.8.1 (Tue Oct 21 2003 - 15:54:51 CDT)
- Re: mousing problem under OS X (Tue Oct 21 2003 - 15:57:22 CDT)
- Re: show hbonds (Fri Oct 17 2003 - 18:16:47 CDT)
- Re: ribbon representation (Fri Oct 17 2003 - 18:14:17 CDT)
- Re: loading crd files into VMD (Wed Oct 15 2003 - 17:00:12 CDT)
- Re: VMD performance on Mac OSX, 10.2.8 (Wed Oct 15 2003 - 14:36:32 CDT)
- Re: VMD performance on Mac OSX, 10.2.8 (Wed Oct 15 2003 - 13:24:02 CDT)
- Re: vmd 1.8 Linux mesa on RedHat (Wed Oct 15 2003 - 10:25:47 CDT)
- Re: vmd 1.8 Linux mesa on RedHat (Tue Oct 14 2003 - 16:59:24 CDT)
- Re: vmd 1.8 Linux mesa on RedHat (Tue Oct 14 2003 - 15:45:51 CDT)
- Re: VMD performance on Mac OSX, 10.2.8 (Tue Oct 14 2003 - 15:43:18 CDT)
- Re: Compiling VMD on IRIX 6.5 redux (Tue Oct 14 2003 - 15:25:49 CDT)
- Re: Setting default viewing window location in XP (Tue Oct 14 2003 - 11:03:04 CDT)
- Re: vmd information (Wed Oct 08 2003 - 22:45:18 CDT)
- Re: water sphere (Wed Oct 08 2003 - 15:21:02 CDT)
- Re: VDW radii in input files (Tue Oct 07 2003 - 15:42:28 CDT)
- Re: VDW radii in input files (Tue Oct 07 2003 - 15:35:08 CDT)
- Re: water sphere (Tue Oct 07 2003 - 14:40:53 CDT)
- Re: water sphere (Tue Oct 07 2003 - 13:32:33 CDT)
- Re: water sphere (Tue Oct 07 2003 - 13:37:23 CDT)
- [kwiseon_kim@nrel.gov: RE: NVIDIA Quadro - CrystalEyes - Windows] (Mon Oct 06 2003 - 17:39:34 CDT)
- Re: Feature request: PBC from CHARMM DCD files (Thu Oct 02 2003 - 16:49:14 CDT)
- Re: HBonds (Thu Oct 02 2003 - 14:55:14 CDT)
- Re: nvidia driver (Wed Oct 01 2003 - 14:08:32 CDT)
- Re: python support and pipes in vmd (Tue Sep 30 2003 - 16:05:49 CDT)
- Re: Python's future in VMD (Tue Sep 30 2003 - 12:30:15 CDT)
- Re: NVIDIA Quadro - CrystalEyes - Linux (Tue Sep 30 2003 - 11:03:20 CDT)
- Re: nvidia driver (Tue Sep 30 2003 - 10:04:21 CDT)
- Re: Python's future in VMD (Tue Sep 30 2003 - 10:14:34 CDT)
- Re: vizualization of modes (Tue Sep 30 2003 - 10:17:49 CDT)
- Re: NAMD, IMD, VMD and interaction (Mon Sep 29 2003 - 15:11:40 CDT)
- Re: File format of DCD Trajectory file (Mon Sep 29 2003 - 10:53:21 CDT)
- Re: AtomLexer/lex.yy.c error (Fri Sep 26 2003 - 13:59:38 CDT)
- Re: AtomLexer/lex.yy.c error (Thu Sep 25 2003 - 16:35:22 CDT)
- Re: vmd script library (Thu Sep 25 2003 - 14:31:54 CDT)
- Re: Mac OS X -dispdev options (Thu Sep 25 2003 - 11:25:57 CDT)
- Re: vrml (Wed Sep 24 2003 - 13:12:14 CDT)
- Re: text mode to calculate Internal Energy (Wed Sep 24 2003 - 13:39:30 CDT)
- Re: water sphere (Wed Sep 24 2003 - 13:16:05 CDT)
- Re: spacemice (Tue Sep 23 2003 - 13:25:41 CDT)
- Re: keyframe animations (Tue Sep 23 2003 - 10:53:08 CDT)
- Re: water sphere (Tue Sep 23 2003 - 10:04:39 CDT)
- Re: showing all vmd output (Thu Sep 18 2003 - 15:59:55 CDT)
- Re: Drawing of bonds while trajectory animation. (Thu Sep 18 2003 - 14:09:30 CDT)
- Re: making movie with snapshot - bogus images (Wed Sep 17 2003 - 16:20:20 CDT)
- Re: VMD, CAVEs and pointing devices (Wed Sep 17 2003 - 13:53:56 CDT)
- Re: vmd 1.8.2b3 (September 16, 2003) on freebsd (Wed Sep 17 2003 - 00:16:02 CDT)
- Re: AtomLexer/lex.yy.c error (Tue Sep 16 2003 - 12:06:33 CDT)
- Re: Systematic VMD crash above critical size (Mon Sep 15 2003 - 10:37:10 CDT)
- Re: Systematic VMD crash above critical size (Mon Sep 15 2003 - 10:21:50 CDT)
- Re: OpenGLExtensions.C compile problem (Sun Sep 14 2003 - 14:44:31 CDT)
- Re: updating cartoon representation in trajectory (Sun Sep 14 2003 - 11:00:11 CDT)
- Re: loading trj file (Fri Sep 12 2003 - 15:16:48 CDT)
- Re: IMD interface code and endianness (Fri Sep 12 2003 - 14:10:51 CDT)
- Re: "Distributed Cavelib" VMD port (Fri Sep 12 2003 - 11:15:00 CDT)
- Re: trio program (Fri Sep 12 2003 - 10:12:57 CDT)
- Re: static text (Thu Sep 11 2003 - 13:06:06 CDT)
- Re: Backspace not functionning in console (Thu Sep 11 2003 - 10:04:29 CDT)
- Re: OpenGLExtensions.C compile problem (Thu Sep 11 2003 - 10:12:19 CDT)
- Re: Reading large traj file error or how to divide a large traj file into parts? (Wed Sep 10 2003 - 16:07:34 CDT)
- Re: numerical output for SURF? (Wed Sep 10 2003 - 15:42:33 CDT)
- Re: Reading large traj file error or how to divide a large traj file into parts? (Wed Sep 10 2003 - 14:56:18 CDT)
- Re: Backspace not functionning in console (Wed Sep 10 2003 - 10:07:34 CDT)
- Re: compile VMD on freebsd 4.8 (Tue Sep 09 2003 - 19:43:33 CDT)
- Re: python: packages not found also...(repost) (Tue Sep 09 2003 - 02:10:39 CDT)
- Re: drawing objects (Tue Sep 09 2003 - 02:20:35 CDT)
- Re: hardware stereo with nVidia card (Wed Sep 03 2003 - 22:44:38 CDT)
- Re: simple question (Wed Sep 03 2003 - 22:39:14 CDT)
- Re: reading/writing (Thu Aug 28 2003 - 19:58:15 CDT)
- Re: Amber prmtop/inpcrd files (Thu Aug 28 2003 - 15:46:52 CDT)
- Re: reading/writing (Thu Aug 28 2003 - 15:38:18 CDT)
- Re: Graphics workstation and Xenon problems with VMD? (Wed Aug 27 2003 - 13:39:17 CDT)
- VMD support -- Out of town until Sept. 9th (Wed Aug 27 2003 - 11:02:20 CDT)
- Re: Graphics workstation and Xenon problems with VMD? (Wed Aug 27 2003 - 00:26:11 CDT)
- Re: linux mesa binaries no longer available? (Tue Aug 26 2003 - 14:13:11 CDT)
- Re: More Script Problems (Tue Aug 26 2003 - 13:32:18 CDT)
- Re: More Script Problems (Tue Aug 26 2003 - 09:31:24 CDT)
- Re: support for multi-frame XYZ files? (Tue Aug 26 2003 - 00:13:35 CDT)
- Re: reading/writing (Mon Aug 25 2003 - 19:11:16 CDT)
- Re: Using Solvate Script (Mon Aug 25 2003 - 13:27:45 CDT)
- Re: colors changed in animation (Mon Aug 25 2003 - 10:32:47 CDT)
- Re: truncated octahedron box in namd (fwd) (Mon Aug 25 2003 - 10:24:18 CDT)
- Re: VMD print out (Thu Aug 14 2003 - 22:15:42 CDT)
- Re: rgb to mpg (Thu Aug 14 2003 - 22:01:08 CDT)
- Re: configuring vmd w/ browser on OS X (Mon Aug 11 2003 - 11:22:14 CDT)
- Re: rgb to mpg (Mon Aug 11 2003 - 10:50:42 CDT)
- Re: rgb to mpg (Fri Aug 08 2003 - 18:34:46 CDT)
- Re: Bondlength information! (Wed Aug 06 2003 - 11:04:57 CDT)
- Re: python: cannot find library (Wed Aug 06 2003 - 11:02:24 CDT)
- Re: error when making a movie (Wed Aug 06 2003 - 10:38:57 CDT)
- Re: error when making a movie (Tue Aug 05 2003 - 23:00:52 CDT)
- Re: error when making a movie (Tue Aug 05 2003 - 21:59:45 CDT)
- Re: Vmd -dispdev text under OS X (Mon Aug 04 2003 - 20:13:47 CDT)
- Re: problems compiling vmd (1.8.1) (Mon Aug 04 2003 - 14:34:24 CDT)
- Re: Amber prmtop/inpcrd files (Thu Jul 31 2003 - 18:01:25 CDT)
- Re: Amber prmtop/inpcrd files (Thu Jul 31 2003 - 11:44:38 CDT)
- Re: Some improvements for 1.8.2 (Fri Jul 25 2003 - 20:37:46 CDT)
- Re: volume slice problem (Fri Jul 25 2003 - 10:12:03 CDT)
- VMD at Siggraph next week... (Thu Jul 24 2003 - 14:18:17 CDT)
- Re: compile VMD on freebsd 4.8 (Wed Jul 23 2003 - 14:27:04 CDT)
- New VMD CVS tree location, update your aliases... (Wed Jul 23 2003 - 14:23:55 CDT)
- New VMD-L subject lines... (Tue Jul 22 2003 - 16:53:05 CDT)
- Re: Labels (atom type, partial charge) (Thu Jul 17 2003 - 20:14:25 CDT)
- Re: superposition (Thu Jul 17 2003 - 19:55:49 CDT)
- Re: STL files (Thu Jul 17 2003 - 11:21:22 CDT)
- Re: superposition (Thu Jul 17 2003 - 09:48:20 CDT)
- Re: Problem with Vmd on SGI + Cavelib (Wed Jul 16 2003 - 16:34:45 CDT)
- Re: Problem with Vmd on SGI + Cavelib (Tue Jul 15 2003 - 23:33:55 CDT)
- Re: PLT file format? (Tue Jul 15 2003 - 23:16:39 CDT)
- Re: question (Tue Jul 15 2003 - 17:08:58 CDT)
- Re: question (Tue Jul 15 2003 - 16:33:13 CDT)
- Re: VMD and doubleprecision trajectories (Tue Jul 15 2003 - 09:48:44 CDT)
- Re: Problem with Vmd on SGI + Cavelib (Fri Jul 11 2003 - 12:59:49 CDT)
- Re: animate delete (Fri Jul 11 2003 - 10:20:11 CDT)
- Re: VMD (Tue Jul 08 2003 - 10:44:23 CDT)
- Re: print results to file (Mon Jul 07 2003 - 18:16:26 CDT)
- Note about VMD 1.8.1 on on MacOS X 10.1.x.... (Mon Jul 07 2003 - 17:20:21 CDT)
- Re: MSMS and VMD: vertices discripancy (Thu Jul 03 2003 - 14:37:27 CDT)
- Re: PLT file format? (Thu Jul 03 2003 - 13:58:53 CDT)
- Re: PLT file format? (Tue Jun 24 2003 - 10:46:43 CDT)
- Re: question on resname (Tue Jun 24 2003 - 10:31:10 CDT)
- Re: your mail (Tue Jun 24 2003 - 10:18:33 CDT)
- Re: .XYZ File format (DL_POLY conversion) (Mon Jun 23 2003 - 09:37:34 CDT)
- Re: Visualizing CURVES output (Fri Jun 20 2003 - 15:11:25 CDT)
- Re: quicktime/mpeg movies (Fri Jun 20 2003 - 14:59:37 CDT)
- Re: coloring method: user (Fri Jun 20 2003 - 10:03:15 CDT)
- Re: Bond Lengths (Fri Jun 20 2003 - 09:55:54 CDT)
- Re: coloring waters (Thu Jun 19 2003 - 19:50:02 CDT)
- Re: PLT file format? (Thu Jun 19 2003 - 11:03:28 CDT)
- Re: New User of VMD (Wed Jun 18 2003 - 13:43:53 CDT)
- Re: MacOSX VMD errors. (solved) (Wed Jun 18 2003 - 12:57:00 CDT)
- Re: quicktime/mpeg movies (Wed Jun 18 2003 - 11:21:53 CDT)
- Re: MacOSX VMD errors. (Wed Jun 18 2003 - 10:55:19 CDT)
- Re: VMD & NAMD (Wed Jun 18 2003 - 10:09:35 CDT)
- Re: amber trajectory (Wed Jun 18 2003 - 09:55:39 CDT)
- Re: opengl window resize hangs on linux/nvidia (Tue Jun 17 2003 - 15:32:29 CDT)
- Re: MSMS and VMD: vertices discripancy (Tue Jun 17 2003 - 12:51:20 CDT)
- Re: MSMS and VMD: vertices discripancy (Tue Jun 17 2003 - 12:22:39 CDT)
- Re: MSMS and VMD: vertices discripancy (Mon Jun 16 2003 - 18:48:56 CDT)
- Re: osX anti aliasing and rendering speed / window size on linux (Mon Jun 16 2003 - 11:26:06 CDT)
- Re: osX anti aliasing and rendering speed / window size on linux (Mon Jun 16 2003 - 10:11:33 CDT)
- Re: Announce: VMD 1.8.1 released!! (Sun Jun 15 2003 - 23:37:12 CDT)
- Announce: VMD 1.8.1 released!! (Sun Jun 15 2003 - 15:38:19 CDT)
- Re: NAMD IMD large protein model (Fri Jun 13 2003 - 15:53:15 CDT)
- Re: double image for one eye with crystal eyes stereo (Fri Jun 13 2003 - 10:13:58 CDT)
- Re: double image for one eye with crystal eyes stereo (Fri Jun 13 2003 - 10:04:58 CDT)
- Re: Support Contours? (Fri Jun 13 2003 - 09:53:49 CDT)
- Re: stereo glasses and VMD (Thu Jun 12 2003 - 15:26:17 CDT)
- Re: double image for one eye with crystal eyes stereo (Thu Jun 12 2003 - 11:24:51 CDT)
- Re: double image for one eye with crystal eyes stereo (Thu Jun 12 2003 - 11:07:01 CDT)
- Re: double image for one eye with crystal eyes stereo (Thu Jun 12 2003 - 10:11:43 CDT)
- Re: VMD Error! (fwd) (Wed Jun 11 2003 - 09:44:48 CDT)
- Re: VMD and Situs (Thu Jun 05 2003 - 09:10:21 CDT)
- Re: Situs (Wed Jun 04 2003 - 17:36:45 CDT)
- Re: distance to solvent accessible surface (Wed Jun 04 2003 - 16:23:06 CDT)
- Re: Format of the axes (Wed Jun 04 2003 - 14:22:20 CDT)
- Re: Situs (Wed Jun 04 2003 - 14:03:56 CDT)
- Re: Situs (Wed Jun 04 2003 - 13:52:49 CDT)
- Re: Dihedral angle calculation! (Wed Jun 04 2003 - 11:32:15 CDT)
- Re: tubes (Tue Jun 03 2003 - 13:41:23 CDT)
- Re: Rotating dihedrals (Fri May 30 2003 - 16:04:54 CDT)
- Re: problem in loading dcd file? (Fri May 30 2003 - 16:02:50 CDT)
- Re: cartoon representation (Fri May 30 2003 - 15:46:30 CDT)
- Re: Rotating dihedrals (Fri May 30 2003 - 15:16:18 CDT)
- Re: problem in loading dcd file? (Fri May 30 2003 - 10:29:32 CDT)
- Re: trajectory_path (Fri May 30 2003 - 10:19:55 CDT)
- Re: Missing bonds (Fri May 30 2003 - 10:03:34 CDT)
- Re: load multiple pdb files simultaneously (Wed May 28 2003 - 19:28:34 CDT)
- Re: advice for a PCI video card on redhat (Wed May 28 2003 - 15:49:07 CDT)
- Re: IMD interface code and endianness (Wed May 28 2003 - 14:36:42 CDT)
- Re: IMD interface code and endianness (Wed May 28 2003 - 13:55:17 CDT)
- Re: 3-d visualization (Wed May 28 2003 - 12:29:25 CDT)
- Re: implicit casting (Fri May 23 2003 - 15:20:51 CDT)
- VMD 1.8.1 beta 8 posted... (Fri May 23 2003 - 00:28:04 CDT)
- Re: your mail (Thu May 22 2003 - 23:18:11 CDT)
- Re: compiling/porting vmd (Thu May 22 2003 - 23:03:06 CDT)
- Wrapping atoms around unit cell boundaries (Thu May 22 2003 - 10:14:18 CDT)
- VMD 1.8.1 beta 7 posted.. (Tue May 20 2003 - 18:21:42 CDT)
- Re: Graphics Cards (Tue May 20 2003 - 10:55:24 CDT)
- Re: VMD 1.8.1 beta 6 posted... (Mon May 19 2003 - 18:15:09 CDT)
- VMD 1.8.1 beta 6 posted... (Mon May 19 2003 - 18:13:55 CDT)
- Re: Graphics Cards (Mon May 19 2003 - 12:27:54 CDT)
- Re: VMD mods for the CAVE (Fri May 16 2003 - 10:11:15 CDT)
- Re: solute + solvent temperature? (Fri May 16 2003 - 10:00:27 CDT)
- Re: VMD 1.8 on Windows2000 to crash when executing simple scripts (Thu May 15 2003 - 17:52:44 CDT)
- VMD 1.8.1 beta 5 posted for testing... (Thu May 15 2003 - 17:35:00 CDT)
- Re: changing atom number in animation (Thu May 15 2003 - 16:21:24 CDT)
- Re: solute + solvent temperature? (Thu May 15 2003 - 16:19:58 CDT)
- Re: VMD on redhat9 (Thu May 15 2003 - 16:00:04 CDT)
- Re: Where is the Tracker Menu (Tue May 13 2003 - 21:15:17 CDT)
- Re: VMD 1.8.1 beta 4 posted... (Mon May 12 2003 - 18:59:46 CDT)
- Re: Is it possible to read a discover trajectory into VMD? (Mon May 12 2003 - 15:37:44 CDT)
- VMD 1.8.1 beta 4 posted... (Mon May 12 2003 - 15:25:22 CDT)
- Re: changing atom number in animation (Mon May 12 2003 - 11:07:32 CDT)
- Re: Plugins Problem with 1.8.1b2 (Mon May 12 2003 - 11:03:23 CDT)
- Re: about superimposing by VMD (Fri May 09 2003 - 10:46:46 CDT)
- Re: vmdmovie on OS X current (Fri May 09 2003 - 09:48:56 CDT)
- Re: Wavefront output of VMD (Wed May 07 2003 - 11:09:12 CDT)
- Re: new color scale (Tue May 06 2003 - 13:06:01 CDT)
- Re: Memory problems using the "move" command inside a loop! (Fri May 02 2003 - 15:30:39 CDT)
- Re: VMD on Solaris 2.x doesn't compile (Fri May 02 2003 - 13:08:22 CDT)
- Re: Save_state and Load_state (Fri May 02 2003 - 10:04:44 CDT)
- Re: VMD on Solaris 2.x doesn't compile (Fri May 02 2003 - 09:52:53 CDT)
- Re: cursor size/shape in pick mode (Thu May 01 2003 - 08:30:57 CDT)
- Re: VMD on redhat9 (Wed Apr 30 2003 - 20:48:02 CDT)
- Re: Some comments about stereo with nvidia cards & shutter glasses (Wed Apr 30 2003 - 20:45:29 CDT)
- Re: Memory problems using the "move" command inside a loop! (Wed Apr 30 2003 - 10:05:19 CDT)
- Re: problem with labels (Tue Apr 29 2003 - 17:53:40 CDT)
- Re: VMD on redhat9 (Tue Apr 29 2003 - 13:41:30 CDT)
- Re: problem with labels (Tue Apr 29 2003 - 13:36:00 CDT)
- Re: problem with labels (Tue Apr 29 2003 - 13:07:30 CDT)
- Re: DCD file format? (Fri Apr 25 2003 - 17:40:04 CDT)
- Re: unit cell information (Fri Apr 25 2003 - 17:28:48 CDT)
- Re: Text-line command for Graphics? (Fri Apr 25 2003 - 16:05:46 CDT)
- Re: DCD file format? (Fri Apr 25 2003 - 16:02:00 CDT)
- Re: Updating colors (Wed Apr 23 2003 - 15:30:28 CDT)
- Re: Updating colors (Wed Apr 23 2003 - 15:24:57 CDT)
- Re: Updating colors (Wed Apr 23 2003 - 15:01:05 CDT)
- Re: installation problems with Redhat 9 (Wed Apr 23 2003 - 13:27:57 CDT)
- Re: Movie Script (Wed Apr 23 2003 - 09:48:40 CDT)
- VMD 1.8.1 beta 2 available for testing.... (Tue Apr 22 2003 - 15:25:05 CDT)
- Re: question about periodicity (Tue Apr 22 2003 - 13:57:56 CDT)
- Re: Memory problems with XP (Mon Apr 21 2003 - 11:31:59 CDT)
- Fwd: FW: centering selection on screen (Thu Apr 17 2003 - 12:38:35 CDT)
- Re: Wait command in Win2000 (Fri Apr 11 2003 - 17:24:22 CDT)
- Re: Wait command in Win2000 (Fri Apr 11 2003 - 16:47:41 CDT)
- Re: Wait command in Win2000 (Fri Apr 11 2003 - 15:52:33 CDT)
- Re: water box (Fri Apr 11 2003 - 14:56:41 CDT)
- Re: water box (Fri Apr 11 2003 - 14:55:44 CDT)
- Re: a few questions on uninstall, labels, rasmol,seq window (Fri Apr 11 2003 - 14:49:49 CDT)
- Re: water box (Thu Apr 10 2003 - 19:30:22 CDT)
- Re: plotting wave functions (Thu Apr 10 2003 - 19:27:36 CDT)
- Re: Error compiling trio (Wed Apr 09 2003 - 10:08:53 CDT)
- Re: Metal-Metal distance (Tue Apr 08 2003 - 17:42:22 CDT)
- Re: Drawing bonds to metals (Tue Apr 08 2003 - 17:10:39 CDT)
- Re: python: error importing packages (Tue Apr 08 2003 - 10:56:41 CDT)
- Re: gamepad on linux? (Wed Apr 02 2003 - 11:15:44 CST)
- Re: your mail (Mon Mar 31 2003 - 10:09:49 CST)
- Re: Problem with stride, surf and tachyon in Windows2000 (Fri Mar 28 2003 - 15:37:49 CST)
- Re: animation question (Thu Mar 27 2003 - 22:51:57 CST)
- Re: Problem with stride, surf and tachyon in Windows2000 (Wed Mar 26 2003 - 13:42:54 CST)
- Re: Compilation issues with tcl.h (Tue Mar 25 2003 - 22:33:02 CST)
- Re: drawing bonds (Tue Mar 25 2003 - 09:36:38 CST)
- Re: Can't import python math module (Mon Mar 24 2003 - 10:47:19 CST)
- Re: Distance, angle (Mon Mar 24 2003 - 10:27:52 CST)
- Re: mouse-move-rep in VMD 1.8 (Fri Mar 21 2003 - 16:44:59 CST)
- Re: Memory problems with TCL scripts in VMD. (Fri Mar 21 2003 - 16:36:02 CST)
- Re: Missing vmdplugin.h in VMD source code (Fri Mar 21 2003 - 16:31:34 CST)
- Re: PBC - setting box size (Thu Mar 20 2003 - 21:58:52 CST)
- Re: your mail (Thu Mar 20 2003 - 14:01:56 CST)
- Re: AMBER parmfiles (Mon Mar 17 2003 - 10:06:11 CST)
- Re: problems with the Surf... (Fri Mar 14 2003 - 11:09:15 CST)
- Re: question on Force (Wed Mar 12 2003 - 17:18:12 CST)
- Re: atom velocity arrows (Wed Mar 12 2003 - 15:24:31 CST)
- Re: stereo display on NVIDIA Quadro4 750 XGL (Wed Mar 12 2003 - 15:01:15 CST)
- Re: question on Force (Wed Mar 12 2003 - 14:27:54 CST)
- Re: Trasperent images (Wed Mar 12 2003 - 13:53:32 CST)
- Re: atom velocity arrows (Wed Mar 12 2003 - 13:45:21 CST)
- Re: bond connectivity for different frames (Tue Mar 11 2003 - 10:26:52 CST)
- Re: msms question... (Fri Mar 07 2003 - 17:00:41 CST)
- Re: msms question... (Fri Mar 07 2003 - 09:40:43 CST)
- Re: Backspace and delete (Thu Mar 06 2003 - 18:46:50 CST)
- Re: two molecules (Thu Mar 06 2003 - 14:38:49 CST)
- Re: volume problems (Thu Mar 06 2003 - 13:42:53 CST)
- Re: two molecules (Thu Mar 06 2003 - 12:30:12 CST)
- Re: Protein Reorientation (Thu Mar 06 2003 - 10:52:52 CST)
- Re: problems with the Surf... (Thu Mar 06 2003 - 10:18:30 CST)
- Re: problems with the Surf... (Thu Mar 06 2003 - 10:07:23 CST)
- Re: residue labels in vmd (Thu Mar 06 2003 - 10:05:37 CST)
- Re: 'topology' command crashes vmd 1.8 (LINUX) (Wed Mar 05 2003 - 09:57:56 CST)
- Re: Suggested graphic card :: LINUX (Mon Mar 03 2003 - 10:51:31 CST)
- Re: same view in VMD and Molscript (Tue Feb 25 2003 - 15:08:47 CST)
- Re: multiple cells representation (Mon Feb 24 2003 - 22:04:47 CST)
- Re: Problems loading shared object, vmd1.8 linux mesa binaries (Mon Feb 24 2003 - 11:28:14 CST)
- Re: Updating colors at each trajectory step (Mon Feb 24 2003 - 10:49:00 CST)
- Re: making movie SGI (Fri Feb 21 2003 - 15:37:25 CST)
- Announce: Updated VMD 1.8 plugins available (Fri Feb 14 2003 - 16:47:39 CST)
- Fwd: Postdoctoral position available in Molecular Modeling (Fri Feb 14 2003 - 13:27:31 CST)
- Re: rna pdb file (Thu Feb 13 2003 - 14:13:58 CST)
- Re: New user questions (Thu Feb 13 2003 - 13:54:00 CST)
- Re: rna pdb file (Wed Feb 12 2003 - 16:08:55 CST)
- Re: plug-in for multiple frame xyz files (Mon Feb 10 2003 - 14:32:39 CST)
- Re: Making VMD movies (Mon Feb 10 2003 - 12:22:39 CST)
- Re: Making VMD movies (Sun Feb 09 2003 - 23:33:23 CST)
- Re: Making VMD movies (Sun Feb 09 2003 - 23:05:20 CST)
- Re: install of new VMD 1.8 (Thu Feb 06 2003 - 17:27:38 CST)
- [tripp@fis.unam.mx: Re: Pls help me to render files with only traces of proteins!] (Thu Feb 06 2003 - 13:55:43 CST)
- Re: Pls help me to render files with only traces of proteins! (Thu Feb 06 2003 - 10:53:38 CST)
- Re: Pls help me to render files with only traces of proteins! (Thu Feb 06 2003 - 10:51:46 CST)
- Re: Pls help me to render files with only traces of proteins! (Wed Feb 05 2003 - 19:28:31 CST)
- Re: PNY Quadro4 980XGL Card (Wed Feb 05 2003 - 12:40:35 CST)
- Re: VMD 1.8 problems with AMBER parm and crd file (Wed Feb 05 2003 - 09:33:25 CST)
- Re: VMD 1.8 problems with AMBER parm and crd file (Tue Feb 04 2003 - 15:29:38 CST)
- Re: VMD 1.8 problems with AMBER parm and crd file (Tue Feb 04 2003 - 15:00:55 CST)
- Re: remote control (fifo/socket) ? (Tue Feb 04 2003 - 10:08:06 CST)
- Re: different colors (Tue Feb 04 2003 - 10:01:19 CST)
- Bugfix: new save_state.tcl for VMD 1.8 installations... (Fri Jan 31 2003 - 14:02:44 CST)
- Re: SASA (Fri Jan 31 2003 - 10:24:41 CST)
- Re: save_state (Thu Jan 30 2003 - 13:28:24 CST)
- Re: mol volume (Wed Jan 29 2003 - 13:51:23 CST)
- Re: compiling vmd... (Tue Jan 28 2003 - 09:39:36 CST)
- Re: Stereo mode on NVidia/Win2000 (Mon Jan 27 2003 - 22:54:53 CST)
- Re: Stereo mode on NVidia/Win2000 (Fri Jan 24 2003 - 17:58:35 CST)
- Re: Stereo mode on NVidia/Win2000 (Fri Jan 24 2003 - 14:18:32 CST)
- Re: Stereo mode on NVidia/Win2000 (Fri Jan 24 2003 - 14:01:55 CST)
- Re: Stereo mode on NVidia/Win2000 (Fri Jan 24 2003 - 10:20:10 CST)
- [jrui@ci.uc.pt: Re: visualizing Delphi output (electrostatic potential)] (Thu Jan 23 2003 - 14:37:36 CST)
- Re: visualizing Delphi output (electrostatic potential) (Thu Jan 23 2003 - 10:23:09 CST)
- Re: Surfaces/Cavities (Thu Jan 23 2003 - 09:42:38 CST)
- Re: 2 more quick questions (Wed Jan 22 2003 - 18:18:30 CST)
- Re: Surfaces/Cavities (Wed Jan 22 2003 - 14:56:05 CST)
- Re: Surfaces/Cavities (Wed Jan 22 2003 - 14:16:49 CST)
- Re: 20 colors for 20 amino acids! (Wed Jan 22 2003 - 10:13:30 CST)
- Re: Tachyon VMD and MPI (Tue Jan 21 2003 - 15:44:11 CST)
- Re: aligntool docs?... (Tue Jan 21 2003 - 15:36:56 CST)
- Re: SHAKE/namd (Thu Jan 16 2003 - 20:54:37 CST)
- Re: pdb files in VMD/NAMD TUTORIAL (Thu Jan 16 2003 - 15:11:53 CST)
- Re: SCRIPT directory... (Wed Jan 15 2003 - 11:47:47 CST)
- Re: Maximum number of atoms/bonds (Wed Jan 15 2003 - 10:33:03 CST)
- Re: solvate option in vmd (Wed Jan 15 2003 - 10:29:36 CST)
- [ARitger@nvidia.com: Re: problems with stereo display on NVIDIA Quadro4 750 XGL] (Tue Jan 14 2003 - 13:07:58 CST)
- Re: movie from amber traj (Tue Jan 14 2003 - 13:02:30 CST)
- Re: stereo display on NVIDIA Quadro4 750 XGL (Mon Jan 13 2003 - 17:14:06 CST)
- Re: stereo display on NVIDIA Quadro4 750 XGL (Tue Jan 07 2003 - 09:42:35 CST)
- Re: hydrophobicity on the Connolly surface (Thu Jan 02 2003 - 10:33:33 CST)
- Re: Stereo VMD (Thu Dec 26 2002 - 15:40:43 CST)
- Re: STL format file - rendering (Thu Dec 19 2002 - 15:34:41 CST)
- Re: vmd version 1.8 (Wed Dec 18 2002 - 14:46:11 CST)
- Re: surface problems (Wed Dec 18 2002 - 09:11:52 CST)
- Re: amber trajectory (Tue Dec 17 2002 - 23:44:51 CST)
- Re: saving a tiff file (Tue Dec 17 2002 - 16:36:56 CST)
- Re: saving a tiff file (Mon Dec 16 2002 - 17:43:51 CST)
- Re: Loading multiple PDB files in VMD 1.8 (Tue Dec 10 2002 - 18:02:39 CST)
- Re: Loading XYZ trajectory file (Tue Dec 10 2002 - 12:39:23 CST)
- Re: Tachyon VMD and MPI (Mon Dec 09 2002 - 18:47:57 CST)
- Re: Empty Extension menu on OSX (Mon Dec 09 2002 - 17:35:32 CST)
- Announce: VMD 1.8 is available! (Mon Dec 09 2002 - 15:22:28 CST)
- Re: 3D printing (Fri Dec 06 2002 - 16:17:24 CST)
- Re: rotate a molecule (Thu Dec 05 2002 - 17:12:33 CST)
- Re: converting (Wed Dec 04 2002 - 16:16:22 CST)
- Re: draw a vector (Sat Nov 30 2002 - 15:17:39 CST)
- Fwd: GROMOS to AMBER and reverse (Fri Nov 29 2002 - 23:23:53 CST)
- Re: dti monitor linux (Fri Nov 29 2002 - 15:58:59 CST)
- Re: polar coordinates (Wed Nov 27 2002 - 12:34:10 CST)
- Re: unix -vmd (Tue Nov 26 2002 - 17:39:34 CST)
- VMD 1.8 beta 6 Unix binaries available... (Tue Nov 26 2002 - 16:16:16 CST)
- Re: Using Magellan Spacemouse with VMD (Tue Nov 26 2002 - 14:49:38 CST)
- Re: Raytracing with tachyon/povray because of pb with raster3d (Tue Nov 26 2002 - 13:34:38 CST)
- Re: Raytracing with tachyon/povray because of pb with raster3d (Tue Nov 26 2002 - 13:11:26 CST)
- Re: Raytracing with tachyon/povray because of pb with raster3d (Tue Nov 26 2002 - 11:17:33 CST)
- Re: breaking the last bond when loading (Tue Nov 26 2002 - 11:06:20 CST)
- Re: breaking the last bond when loading (Tue Nov 26 2002 - 09:34:35 CST)
- Re: A very minor question on the MacOS X native bundle version (Sun Nov 24 2002 - 20:43:06 CST)
- New AMBER 7 file reader plugin, testers needed :-) (Wed Nov 20 2002 - 13:23:32 CST)
- VMD 1.8 beta 2 available for testing! (Mon Nov 18 2002 - 17:01:35 CST)
- Re: Maintaining original coordinates from PDB ? (Mon Nov 18 2002 - 09:54:24 CST)
- Re: How to add atoms to a molecule? (Mon Nov 18 2002 - 00:35:43 CST)
- MacOS X window resizing fix... (Mon Nov 18 2002 - 00:21:53 CST)
- Re: AMBER6 format (Mon Nov 18 2002 - 00:20:19 CST)
- Re: cartoon representation (Fri Nov 15 2002 - 09:58:43 CST)
- Re: cartoon representation (Thu Nov 14 2002 - 16:02:48 CST)
- Re: avoiding distance based bond search when reading a PDB file (Thu Nov 14 2002 - 15:25:53 CST)
- Re: CRD problems and CRD to DCD conversion (Wed Nov 13 2002 - 15:06:39 CST)
- Re: mpeg movie from trajectory (Wed Nov 13 2002 - 09:40:41 CST)
- Re: mpeg movie from trajectory (Wed Nov 13 2002 - 09:38:49 CST)
- Re: Problems with color (Mon Nov 11 2002 - 10:07:57 CST)
- Re: Labels 'springs' in labels form (Fri Nov 08 2002 - 17:33:21 CST)
- Re: alignment and rmsd fit (Fri Nov 08 2002 - 17:00:06 CST)
- Re: Stereo quality and Save State Problems (Fri Nov 08 2002 - 14:36:04 CST)
- Re: Beta color of atoms (Fri Nov 08 2002 - 11:38:47 CST)
- Re: sources (Fri Nov 08 2002 - 11:36:08 CST)
- Re: No stereo mode in vmd -dispdev none ?? (Thu Nov 07 2002 - 16:46:02 CST)
- [mjd@dti3d.com: Re: VMD 1.8 alpha 29 available for testing!] (Thu Nov 07 2002 - 15:11:38 CST)
- Re: animation with PDBs (Thu Nov 07 2002 - 10:33:26 CST)
- Re: VMD 1.8 alpha 29 available for testing! (Wed Nov 06 2002 - 14:40:16 CST)
- Re: Display size in VMD 1.8a29 for OS X (Tue Nov 05 2002 - 10:41:46 CST)
- Re: command args to MSMS in VMD (Tue Nov 05 2002 - 10:27:26 CST)
- Re: vmd runs slowly on vmware (Mon Nov 04 2002 - 18:31:54 CST)
- Re: AMBER6 format (Mon Nov 04 2002 - 14:56:12 CST)
- Re: VMD 1.8 alpha 29 available for testing! (Mon Nov 04 2002 - 10:51:34 CST)
- Re: VMD 1.8 alpha 29 available for testing! (Sat Nov 02 2002 - 00:25:51 CST)
- Re: Coloring of atoms/molecules (Fri Nov 01 2002 - 21:18:42 CST)
- VMD 1.8 alpha 29 available for testing! (Fri Nov 01 2002 - 17:52:09 CST)
- Re: xyz movie (Thu Oct 31 2002 - 19:56:59 CST)
- Re: helices in coil (Wed Oct 30 2002 - 10:48:47 CST)
- Re: Another feature request for vmd 1.8 (Wed Oct 30 2002 - 10:41:11 CST)
- Re: hydrogen bonding (Wed Oct 30 2002 - 10:37:02 CST)
- Re: Unable to use short loabels (Wed Oct 30 2002 - 10:14:14 CST)
- Re: positioning a protein with trans etc. (Wed Oct 30 2002 - 10:02:35 CST)
- Re: Gromacs file formats gro, xtc and trr (Tue Oct 29 2002 - 16:14:37 CST)
- Re: positioning a protein with trans etc. (Tue Oct 29 2002 - 15:56:18 CST)
- Re: reference about structure (Tue Oct 29 2002 - 09:49:31 CST)
- Re: vmd checking socket in tcl (Mon Oct 28 2002 - 19:46:12 CST)
- Re: rms dumping in a file (Mon Oct 28 2002 - 10:34:44 CST)
- Re: core dump when launching vmd1.8a21 (Thu Oct 24 2002 - 20:36:16 CDT)
- Re: core dump when launching vmd1.8a21 (Thu Oct 24 2002 - 19:55:21 CDT)
- Re: Vmd console window colors in Irix 6.5 (Thu Oct 24 2002 - 14:31:47 CDT)
- Re: Antialiasing ? (Wed Oct 23 2002 - 10:07:15 CDT)
- Re: XTC files in 1.8a21 (Wed Oct 16 2002 - 10:22:41 CDT)
- Re: load molecule made by amber7. (Tue Oct 15 2002 - 15:52:00 CDT)
- Re: MacOSX and the solvate package (Fri Oct 11 2002 - 22:48:14 CDT)
- Windows XP refresh rate bug/stereo, information page (Tue Oct 08 2002 - 17:25:08 CDT)
- Re: VDW radii (Thu Oct 03 2002 - 09:39:22 CDT)
- Re: "Pick item mode" inactive in OSX bundle ? (Thu Oct 03 2002 - 08:47:32 CDT)
- Re: Native OSX VMD version for 10.2 (Wed Oct 02 2002 - 13:18:51 CDT)
- Re: quick help (Wed Oct 02 2002 - 00:54:33 CDT)
- Re: VRML2.0 (Tue Oct 01 2002 - 10:05:37 CDT)
- VMD 1.8a28 bundle for MacOS X 10.2 available... (Thu Sep 26 2002 - 18:19:18 CDT)
- Re: How to show the strain energies of each atom (Thu Sep 26 2002 - 16:38:08 CDT)
- Re: How to select the interacting atoms between two molecules in two different pdb files (Tue Sep 24 2002 - 15:30:25 CDT)
- Fwd: superimposing molecules (Tue Sep 24 2002 - 14:23:24 CDT)
- Re: multiple structure PDB files (Tue Sep 24 2002 - 14:19:01 CDT)
- Re: Menu is missing? (Tue Sep 24 2002 - 11:09:51 CDT)
- Re: Save state miss some parameters ! (Tue Sep 24 2002 - 09:36:49 CDT)
- Re: Native OSX VMD version for 10.2 (Mon Sep 23 2002 - 15:22:38 CDT)
- Re: CDROM/Windows/Linux (Thu Sep 19 2002 - 15:16:54 CDT)
- Re: Centre of gravity for movies (Tue Sep 17 2002 - 11:25:07 CDT)
- Re: Is vmd working in float environment ? (Tue Sep 17 2002 - 09:37:14 CDT)
- Re: VMD 1.7.1 on HPUX in text mode (Tue Sep 17 2002 - 09:31:01 CDT)
- Re: vrml output (Mon Sep 16 2002 - 16:02:31 CDT)
- Re: Surface calculation (Mon Sep 16 2002 - 11:04:51 CDT)
- Re: High-Res and Eye 3D glasses and SynthaGram Monitors (Wed Sep 11 2002 - 17:22:56 CDT)
- Re: VMD and CHARMm format (Fri Sep 06 2002 - 15:39:07 CDT)
- Re: All that I never took the time to ask about VMD ... (Fri Sep 06 2002 - 14:51:50 CDT)
- Re: vmd and catdcd (Fri Sep 06 2002 - 14:04:13 CDT)
- Re: VMD 1.7.1 on HPUX (Thu Sep 05 2002 - 14:02:38 CDT)
- Re: Trouble with tcl script (puts command) (Thu Sep 05 2002 - 14:00:11 CDT)
- Re: springs (Thu Sep 05 2002 - 13:58:50 CDT)
- Re: assigning variables for representations (Thu Sep 05 2002 - 13:53:27 CDT)
- People having plugin troubles, READ THIS (Fri Aug 30 2002 - 13:54:55 CDT)
- Re: Getting history and file completion to work in vmd console ? (Fri Aug 30 2002 - 09:58:28 CDT)
- Re: Stereo on Linux: Eyes3D Premium + Nvidia (Thu Aug 29 2002 - 09:40:40 CDT)
- Re: from points to a surface ? (Wed Aug 28 2002 - 16:43:21 CDT)
- Re: ftp failed (Wed Aug 28 2002 - 15:28:00 CDT)
- Re: from points to a surface ? (Wed Aug 28 2002 - 15:05:35 CDT)
- Re: Stereo on Linux: Eyes3D Premium + Nvidia (Wed Aug 28 2002 - 14:58:20 CDT)
- Re: Problem with VMD 1.8a21 under MacOS X 10.2 (Tue Aug 27 2002 - 12:53:55 CDT)
- Re: stereo on linux: DTI monitors? (Mon Aug 26 2002 - 11:10:48 CDT)
- Re: ftp failed (Mon Aug 26 2002 - 10:58:43 CDT)
- Re: reading cube files (Thu Aug 22 2002 - 11:34:29 CDT)
- Re: SPACEBALLS .. in Europe ? (Thu Aug 22 2002 - 09:50:12 CDT)
- Re: SPACEBALLS (Wed Aug 21 2002 - 17:39:15 CDT)
- Re: save (Tue Aug 20 2002 - 17:23:26 CDT)
- Re: [Contribute] transparent MacOS X icon for VMD (Mon Aug 19 2002 - 11:47:21 CDT)
- Re: rmsd problem (Mon Aug 19 2002 - 11:42:08 CDT)
- Re: Charge coloring and Stereo hot keys (Mon Aug 19 2002 - 10:29:48 CDT)
- Re: SURF_BIN and psfgen missing? (Mon Aug 19 2002 - 09:45:59 CDT)
- Re: Couldn't open required GL library (Fri Aug 16 2002 - 15:13:30 CDT)
- Re: Couldn't open required GL library (Fri Aug 16 2002 - 14:40:18 CDT)
- Re: Saving two molecules into one PDB file (Fri Aug 16 2002 - 13:44:32 CDT)
- Re: Cannot start CAVE display (Fri Aug 16 2002 - 11:32:42 CDT)
- Re: [Contribute] transparent MacOS X icon for VMD (Thu Aug 15 2002 - 17:08:44 CDT)
- Re: rmsd problem (Wed Aug 14 2002 - 11:35:17 CDT)
- Re: VMD and rendering packages (Wed Aug 14 2002 - 11:30:51 CDT)
- Re: Phantom on Sgi? (Wed Aug 14 2002 - 10:16:58 CDT)
- Re: Windows XP and Eye3D glasses (Tue Aug 13 2002 - 17:01:37 CDT)
- Re: Windows XP and Eye3D glasses (Tue Aug 13 2002 - 15:29:37 CDT)
- Re: Cannot start CAVE display (Tue Aug 13 2002 - 15:15:27 CDT)
- Re: Joysticks for VMD on Windows XP (Mon Aug 12 2002 - 18:49:35 CDT)
- Re: vmdmovie problem (Fri Aug 09 2002 - 17:00:08 CDT)
- Re: Couldn't open required GL library (Fri Aug 09 2002 - 15:32:33 CDT)
- Re: Gromacs XTC reader broken in 1.8beta version (Thu Aug 08 2002 - 12:46:19 CDT)
- Re: VMD with stereo on RedHat Linux (Wed Aug 07 2002 - 21:17:15 CDT)
- Re: VMD with stereo on RedHat Linux (Wed Aug 07 2002 - 21:14:55 CDT)
- Structural Biology Software Database updated... (Tue Aug 06 2002 - 10:24:14 CDT)
- Re: Chromium (Mon Aug 05 2002 - 14:33:57 CDT)
- Re: Problem with stride (Mon Aug 05 2002 - 12:30:56 CDT)
- Re: Projection on plane (Fri Aug 02 2002 - 10:48:41 CDT)
- Re: vmdmovie problem (Thu Aug 01 2002 - 23:53:24 CDT)
- Re: vmdmovie problem (Thu Aug 01 2002 - 20:00:51 CDT)
- Re: Chromium (Thu Aug 01 2002 - 16:15:00 CDT)
- Re: Chromium (Thu Aug 01 2002 - 15:48:34 CDT)
- Re: delete bonds in TIP3P (Wed Jul 31 2002 - 08:12:28 CDT)
- Re: Linux compile error (Mon Jul 29 2002 - 13:46:08 CDT)
- Re: More Linux woes (Mon Jul 29 2002 - 13:42:58 CDT)
- Re: white background (Mon Jul 29 2002 - 11:01:12 CDT)
- Re: 2D projection (Fri Jul 26 2002 - 09:40:38 CDT)
- Re: bonds in graphical representation (Tue Jul 23 2002 - 22:10:19 CDT)
- Re: No sequence tool for DNA (Tue Jul 23 2002 - 22:01:06 CDT)
- Re: tracker coordinate calibration (Sat Jul 20 2002 - 00:58:51 CDT)
- [gcarter@circular.dna.caltech.edu: Re: Stereoglasses Linux] (Fri Jul 19 2002 - 13:37:11 CDT)
- VMD 1.8 alpha 21 available for testing! (Thu Jul 18 2002 - 19:49:09 CDT)
- Re: vmd python availability on other platforms (Wed Jul 17 2002 - 15:13:46 CDT)
- Re: Simple format for animation (Wed Jul 17 2002 - 15:08:14 CDT)
- Re: problem reading AMBER7 parm file (Wed Jul 17 2002 - 10:23:08 CDT)
- Re: icon in LABEL (Wed Jul 17 2002 - 10:10:03 CDT)
- Re: problem reading AMBER7 parm file (Wed Jul 17 2002 - 09:55:15 CDT)
- Re: Windows vs. Linux (Wed Jul 17 2002 - 09:43:32 CDT)
- Re: VMD and Trackers (Tue Jul 16 2002 - 15:04:35 CDT)
- Re: plugin problems (Tue Jul 16 2002 - 14:45:39 CDT)
- Re: VMD and Trackers (Tue Jul 16 2002 - 14:39:12 CDT)
- Re: vmd on mac 9.1 (Tue Jul 16 2002 - 14:05:06 CDT)
- New VMD 1.8 alpha 20 MacOS X native OpenGL test version... (Sat Jul 13 2002 - 22:39:49 CDT)
- Re: Problem installing on linux (Fri Jul 12 2002 - 14:24:12 CDT)
- VMD / Eye3D stereo works on Mac G4... (Fri Jul 12 2002 - 13:18:21 CDT)
- Re: Problem installing on linux (Fri Jul 12 2002 - 11:38:09 CDT)
- Re: Compressed files (Thu Jul 11 2002 - 10:26:13 CDT)
- Re: MacOS X VMD 1.8 alpha 16 "bundle" test version... (Tue Jul 09 2002 - 14:05:23 CDT)
- Re: MacOSX bundle (Sat Jul 06 2002 - 18:08:10 CDT)
- Re: Simple format for animation (Wed Jul 03 2002 - 19:45:33 CDT)
- MacOS X VMD 1.8 alpha 16 "bundle" test version... (Wed Jul 03 2002 - 14:47:59 CDT)
- Re: problem with bitmap rendering (Wed Jul 03 2002 - 09:24:14 CDT)
- Re: VMD 1.8 alpha 16 MacOSX depends on xterm (Mon Jul 01 2002 - 21:55:40 CDT)
- Re: VMD 1.8 alpha 16 MacOSX depends on xterm (Mon Jul 01 2002 - 14:36:44 CDT)
- Re: Issue with wildcat 3 cards (Mon Jul 01 2002 - 14:34:08 CDT)
- Re: Q: Compiling VMD on IRIX 6.5 (Mon Jul 01 2002 - 09:27:10 CDT)
- Re: viewing insight trajectories with vmd (Tue Jun 25 2002 - 15:15:22 CDT)
- Re: image jumps (Tue Jun 25 2002 - 15:00:36 CDT)
- Re: Mac OSX version (Tue Jun 25 2002 - 12:49:54 CDT)
- Re: MacOS native version resource attach info... (Tue Jun 25 2002 - 11:02:08 CDT)
- RMSD (Re-send of James Cavenaugh's bounced mail) (Tue Jun 25 2002 - 10:50:33 CDT)
- Re: animations with molecular surfaces (Mon Jun 24 2002 - 14:17:12 CDT)
- MacOS native version resource attach info... (Mon Jun 24 2002 - 11:46:10 CDT)
- Re: vmd1.8a16 - no stereo on linux any more (Mon Jun 24 2002 - 11:35:41 CDT)
- Re: Unable to generate surface (Mon Jun 24 2002 - 11:33:52 CDT)
- Re: vmd1.8a16 - no stereo on linux any more (Mon Jun 24 2002 - 10:28:07 CDT)
- VMD 1.8 alpha 16, publically available for testing.... (Fri Jun 21 2002 - 16:14:14 CDT)
- Re: No 'Primary File Type' in Load menu (v1.8a10 on MacOSX) (Thu Jun 20 2002 - 10:12:40 CDT)
- Re: moving objects (Mon Jun 17 2002 - 13:40:21 CDT)
- Re: Tracking devices and VMD (Mon Jun 17 2002 - 11:38:55 CDT)
- Re: vmd-1.8a10; psfgen; AMBER-trajectories; strange bondlengths (Wed Jun 12 2002 - 01:18:34 CDT)
- Re: Mac Titanium video card (Sat Jun 08 2002 - 23:45:47 CDT)
- Re: Default parameters for image renderers (Sat Jun 08 2002 - 22:24:24 CDT)
- Re: Problem with instalation process (Fri Jun 07 2002 - 14:30:28 CDT)
- Re: vibration (Fri Jun 07 2002 - 14:27:39 CDT)
- Re: Problem with instalation process (Fri Jun 07 2002 - 14:08:57 CDT)
- Re: psfgen crashes VMD (Fri Jun 07 2002 - 11:44:41 CDT)
- Re: Problem with instalation process (Fri Jun 07 2002 - 11:42:32 CDT)
- Re: vibration (Fri Jun 07 2002 - 11:32:21 CDT)
- Re: Mandrake and VMD (Thu Jun 06 2002 - 09:55:07 CDT)
- Re: haptic interfaces && namd on clusters (Thu Jun 06 2002 - 01:41:32 CDT)
- Re: haptic interfaces (Thu Jun 06 2002 - 00:24:19 CDT)
- Re: compilation problem using vmd1.8 alpha (Thu May 30 2002 - 20:11:30 CDT)
- VMD 1.8 alpha 10, publically available for testing.... (Fri May 24 2002 - 16:20:54 CDT)
- Re: Metal_Envornment Script (Fri May 24 2002 - 15:40:24 CDT)
- Re: Metal_Envornment Script (Fri May 24 2002 - 12:05:19 CDT)
- Re: Metal_Envornment Script (Fri May 24 2002 - 12:02:42 CDT)
- Re: atoms filter? (Thu May 16 2002 - 10:09:07 CDT)
- Re: about graphics accelaration (Wed May 15 2002 - 11:21:56 CDT)
- Re: Main window (button bars) does not start (Tue May 14 2002 - 10:11:44 CDT)
- Re: transparency (Mon May 13 2002 - 13:25:59 CDT)
- Re: transparency (Mon May 13 2002 - 11:42:13 CDT)
- Re: transparency (Fri May 10 2002 - 12:57:52 CDT)
- Re: compilation error (Fri May 10 2002 - 10:31:05 CDT)
- Re: VMD 1.7.1 (Thu May 09 2002 - 14:28:43 CDT)
- Re: RDFs, TCFs etc. (Mon May 06 2002 - 10:15:14 CDT)
- Re: color by resid (Thu Apr 25 2002 - 14:02:30 CDT)
- Re: About drawing bonds. (Wed Apr 24 2002 - 10:11:10 CDT)
- Re: GnuPlot works! (Mon Apr 22 2002 - 17:09:31 CDT)
- Re: How to plot the data created by VMD analysis script - difference_matrix? (Mon Apr 22 2002 - 14:48:19 CDT)
- Re: stl (Wed Apr 17 2002 - 08:52:40 CDT)
- Re: about graphics accelaration (Fri Apr 12 2002 - 12:27:41 CDT)
- Re: VMD 1.7.1 in CAVE? (Fri Apr 12 2002 - 09:28:46 CDT)
- RE: Animation (Wed Apr 10 2002 - 09:18:24 CDT)
- Re: Linking with FLTK 1.1.0b12 (Tue Apr 09 2002 - 16:01:55 CDT)
- Re: Which drawing method is used in the picture? (Tue Apr 09 2002 - 15:50:12 CDT)
- Re: Which drawing method is used in the picture? (Tue Apr 09 2002 - 15:01:03 CDT)
- Re: Animation (Tue Apr 09 2002 - 14:24:36 CDT)
- Re: Geforce 3 DRI crashes (Tue Apr 09 2002 - 13:07:18 CDT)
- Re: Electron Density Map Display (Tue Apr 09 2002 - 13:02:21 CDT)
- Re: Geforce 3 DRI crashes (Tue Apr 09 2002 - 09:57:55 CDT)
- Announce: new vmdmovie script available... (Mon Apr 08 2002 - 22:23:01 CDT)
- Re: draw text or title in pov (Thu Apr 04 2002 - 21:56:25 CST)
- Re: strange bond (Wed Apr 03 2002 - 14:01:36 CST)
- Re: resid color (Wed Apr 03 2002 - 12:40:29 CST)
- Re: strange bond (Wed Apr 03 2002 - 10:45:40 CST)
- Re: orthographic views and size (Wed Apr 03 2002 - 09:53:30 CST)
- Re: strange bond (Wed Apr 03 2002 - 09:48:14 CST)
- Re: picture/resid color (Tue Apr 02 2002 - 11:18:55 CST)
- Re: Exceeded maximum number of bonds (8) (Sun Mar 31 2002 - 16:38:11 CST)
- Re: Resolution of movie? (Tue Mar 26 2002 - 18:00:20 CST)
- Re: another trivial question regarding the key setting. (Mon Mar 25 2002 - 09:07:14 CST)
- Re: Test release of VMD movie maker (Fri Mar 22 2002 - 10:39:38 CST)
- Re: Test release of VMD movie maker (Fri Mar 22 2002 - 01:43:28 CST)
- Re: Test release of VMD movie maker (Thu Mar 21 2002 - 22:59:10 CST)
- Re: Help on script (Thu Mar 21 2002 - 22:55:31 CST)
- Re: graph button on label form (Mon Mar 18 2002 - 15:23:35 CST)
- Re: smooth movie (Sat Mar 16 2002 - 11:57:54 CST)
- Re: Loading trajectory frames - bug ? Tcl-equivalent ? (Fri Mar 15 2002 - 20:01:41 CST)
- Re: how vmd calculate dihedral angle (Fri Mar 15 2002 - 10:18:23 CST)
- Re: Best hardware for 3d. (Fri Mar 15 2002 - 10:06:09 CST)
- Re: boolean operators in graphics (Thu Mar 14 2002 - 22:39:09 CST)
- Re: New version of VMD movie script/plugin available (Wed Mar 13 2002 - 12:21:54 CST)
- Re: New version of VMD movie script/plugin available (Wed Mar 13 2002 - 10:34:28 CST)
- Re: New version of VMD movie script/plugin available (Wed Mar 13 2002 - 09:34:12 CST)
- Re: Molscript (Wed Mar 13 2002 - 09:31:36 CST)
- New version of VMD movie script/plugin available (Wed Mar 13 2002 - 00:04:10 CST)
- Re: Can any of you help me out in building VMD pls (Mon Mar 11 2002 - 00:11:44 CST)
- Re: Can any of you help me out in building VMD pls (Fri Mar 08 2002 - 09:47:04 CST)
- Re: selection and coloring (Tue Mar 05 2002 - 10:35:48 CST)
- Re: how to color one residue with two or three different colors? (Mon Mar 04 2002 - 15:48:37 CST)
- fwd (Re: coloring method) (Fri Mar 01 2002 - 15:01:54 CST)
- Re: Access to Python libraries from Mandrake8.1 (Thu Feb 28 2002 - 09:59:42 CST)
- Re: Removing perspective projection at startup (Thu Feb 28 2002 - 09:41:57 CST)
- Re: Plotting elect. pot. surface (Wed Feb 27 2002 - 01:34:49 CST)
- Re: Plotting elect. pot. surface (Mon Feb 25 2002 - 17:26:28 CST)
- Re: Plotting elect. pot. surface (Mon Feb 25 2002 - 13:25:22 CST)
- Re: Plotting elect. pot. surface (Mon Feb 25 2002 - 13:17:44 CST)
- Re: Plotting elect. pot. surface (Mon Feb 25 2002 - 11:27:53 CST)
- Re: AtomSel and Graphics (Fri Feb 22 2002 - 16:07:07 CST)
- VMD: EDM and Gaussian "Cube" reader scripts available (Fri Feb 22 2002 - 15:25:18 CST)
- Re: Using Python (Fri Feb 22 2002 - 12:59:19 CST)
- Re: Loading new molecules into VMD from an application (Wed Feb 20 2002 - 20:48:56 CST)
- Re: animated colors, trajectories, etc.. (Tue Feb 19 2002 - 18:41:02 CST)
- VMD CVS and build procedure changes... (Tue Feb 19 2002 - 18:15:06 CST)
- Radial distribution function script (fwd) (Thu Feb 07 2002 - 21:29:50 CST)
- Announce: VMD 1.7.2 (Windows-only GUI update) is available (Wed Feb 06 2002 - 19:07:55 CST)
- Re: van der Waals volume (Tue Feb 05 2002 - 19:29:42 CST)
- NVidia GeForce issues on PCs (article URL) (Tue Feb 05 2002 - 14:25:30 CST)
- Re: Nothing happens with Window's install (Tue Feb 05 2002 - 12:50:45 CST)
- Re: Nothing happens with Window's install (Tue Feb 05 2002 - 11:33:43 CST)
- Re: VMD/Eye3d/Linux/Nvidia question (Fri Feb 01 2002 - 16:23:25 CST)
- Re: Main window off top of screen (Fri Feb 01 2002 - 11:02:17 CST)
- Re: Drawing electron density surfaces (from cube files) (Thu Jan 31 2002 - 15:36:29 CST)
- Re: seeing ions (Thu Jan 24 2002 - 13:23:46 CST)
- Re: Stereo in linux/oxygen gvx1/xig driver (Thu Jan 24 2002 - 12:53:41 CST)
- Re: vmdmovie (Thu Jan 24 2002 - 12:41:36 CST)
- Re: Volumetric Data Formats for VMD (Thu Jan 24 2002 - 09:51:44 CST)
- Re: Stereo in linux/oxygen gvx1/xig driver (Wed Jan 23 2002 - 19:49:00 CST)
- Re: vmd-1.7.1 installation problems (Wed Jan 23 2002 - 09:47:04 CST)
- Re: display panel only showed 1/4 of its area on the screen. (Sun Jan 20 2002 - 13:25:32 CST)
- Re: up arrow for previous commands (Fri Jan 18 2002 - 11:03:39 CST)
- Re: cavetracker (Fri Jan 18 2002 - 01:32:48 CST)
- Re: immersadesk (Fri Jan 18 2002 - 01:27:40 CST)
- Test release of VMD movie maker (Wed Jan 16 2002 - 11:38:14 CST)
- High-end PC graphics boards for VMD... (Fri Jan 04 2002 - 17:23:23 CST)
- Announce: VMD 1.7.1 released! (Sun Dec 23 2001 - 22:53:26 CST)
- Re: Announce: VMD 1.7.1b1 test version is available... (Sat Dec 22 2001 - 21:56:00 CST)
- Re: Pictures (Fri Dec 21 2001 - 11:08:48 CST)
- Re: 3D visualization (Thu Dec 20 2001 - 14:16:33 CST)
- Re: 3D visualization (Thu Dec 20 2001 - 14:09:12 CST)
- Announce: Struc. Bio. Software DB updates (Thu Dec 06 2001 - 11:21:57 CST)
- Announce: VMD 1.7.1b1 test version is available... (Wed Dec 05 2001 - 21:14:37 CST)
- Re: Display problem (Tue Dec 04 2001 - 09:44:20 CST)
- Re: your mail (Tue Dec 04 2001 - 01:55:14 CST)
- Re: save config & RMSD not functioning (Thu Nov 29 2001 - 11:26:24 CST)
- Re: opengl libraries (Tue Nov 27 2001 - 15:04:55 CST)
- Re: opengl libraries (Mon Nov 26 2001 - 12:32:53 CST)
- VMD Spaceball and Magellan/SpaceMouse support for Windows... (Tue Nov 20 2001 - 15:02:06 CST)
- Re: more animating trajectories (Sun Nov 04 2001 - 11:02:59 CST)
- Re: Announce: JMV version 0.7 is available! (Fri Nov 02 2001 - 15:30:28 CST)
- Re: more animating trajectories (Thu Nov 01 2001 - 13:13:47 CST)
- Announce: JMV version 0.7 is available! (Tue Oct 30 2001 - 16:15:33 CST)
- Re: Superimposing two frames (Mon Oct 22 2001 - 10:41:36 CDT)
- Re: SMP, coord transform, cpu usage (Mon Oct 08 2001 - 10:11:18 CDT)
- Re: movie under Windows (Fri Oct 05 2001 - 16:40:32 CDT)
- Re: SMP, coord transform, cpu usage (Fri Oct 05 2001 - 14:40:30 CDT)
- Re: new user animation question (Fri Oct 05 2001 - 12:49:10 CDT)
- VMD 1.7.1 pre-alpha, volume visualization, new stereo modes, etc. (Thu Aug 30 2001 - 23:29:56 CDT)
- Re: Making movies of trajectories (Thu Aug 30 2001 - 21:49:52 CDT)
- Re: problem with RMSD script (Fri Aug 17 2001 - 14:00:10 CDT)
- VMD 1.7 AIX and MacOS X distributions updated... (Wed Aug 08 2001 - 00:57:16 CDT)
- Re: Work around and problem with 1.7 for MacOS X (Tue Aug 07 2001 - 21:35:41 CDT)
- Re: raster3d (Thu Aug 02 2001 - 19:13:49 CDT)
- Announce: VMD 1.7 Released!! (Thu Aug 02 2001 - 14:26:09 CDT)
- Re: fixing a molecule (Mon Jul 30 2001 - 20:40:28 CDT)
- Announce: VMD 1.7b2 is available! (Wed Jul 25 2001 - 10:12:11 CDT)
- (fwd) Re: Dialboxes (Mon Jul 23 2001 - 10:00:55 CDT)
- (fwd) vmd 1.7b1 sequence window disappeares (Mon Jul 23 2001 - 09:59:20 CDT)
- Re: Dialboxes (Sun Jul 22 2001 - 23:58:19 CDT)
- (forwarded) cylinder drawing bug in 1.7b1 on NT? (Fri Jul 20 2001 - 10:20:06 CDT)
- (forwarded) Modifying a Tcl script (Fri Jul 20 2001 - 10:17:04 CDT)
- Announce: VMD 1.7b1 is available! (Tue Jul 10 2001 - 18:15:45 CDT)
- Re: Coloring mols by carbon only (Mon Jul 09 2001 - 10:53:28 CDT)
- Re: follow up (Mon Jun 04 2001 - 15:47:29 CDT)
- Re: Surface slices (Fri May 11 2001 - 13:08:34 CDT)
- VMD 1.6.1 IRIX6_64 startup script fix (Thu May 03 2001 - 11:16:05 CDT)
- Re: bond length definition (Wed Apr 25 2001 - 13:39:35 CDT)
- Announce: VMD 1.6.1 Released! (Tue Apr 24 2001 - 10:03:39 CDT)
- Re: Some newbie questions (Sun Apr 22 2001 - 16:17:35 CDT)
- Re: need help - hardware stereo on a Windows PC (Fri Apr 13 2001 - 00:21:10 CDT)
- Re: Card for VMD with OpenGL & Linux (Wed Apr 11 2001 - 01:31:59 CDT)
- Re: Card for VMD with OpenGL & Linux (Mon Apr 09 2001 - 16:46:34 CDT)
- Re: animation and reps (Sat Mar 31 2001 - 11:02:23 CST)
- NVidia OpenGL HOWTO for Linux users... (Tue Mar 27 2001 - 01:01:37 CST)
- Announce: VMD 1.6.1a3 is available (Mon Mar 12 2001 - 17:46:34 CST)
- Re: switching off the location axes (Fri Mar 09 2001 - 02:51:46 CST)
- Re: Bug in VMD-1.6 (linux, GL) (Fri Mar 09 2001 - 00:25:26 CST)
- Announce: VMD 1.6.1a2 is available (Mon Mar 05 2001 - 15:17:19 CST)
- Re: How can I change the wireframe look (Thu Mar 01 2001 - 14:21:30 CST)
- Announce: VMD Users Image Gallery (Thu Feb 22 2001 - 13:43:31 CST)
- Re: Stereoscopic rendering on Linux (Wed Feb 21 2001 - 11:00:57 CST)
- TkCon, an alternative VMD console... (Mon Feb 19 2001 - 15:07:16 CST)
- Re: vmd, linux & dri (Tue Feb 13 2001 - 10:06:46 CST)
- Re: a question (Tue Feb 06 2001 - 09:55:21 CST)
- Re: vmd, linux & dri (Fri Jan 12 2001 - 17:44:29 CST)
- Announce: Structural Biology Software Database (Thu Jan 04 2001 - 14:04:34 CST)
- Announce: VMD 1.6 Released (Fri Dec 22 2000 - 17:17:04 CST)
- Re: povray images allways perspective? (Thu Dec 14 2000 - 12:45:27 CST)
- Re: povray images allways perspective? (Thu Dec 14 2000 - 10:51:17 CST)
- Re: files (Fri Dec 08 2000 - 12:40:43 CST)
- Re: making a movie with a serie of pdb's (Thu Dec 07 2000 - 09:51:36 CST)
- Re: VMD + MSMS + WinNT (Thu Nov 30 2000 - 21:20:53 CST)
- Announce: MDTools update (Thu Nov 30 2000 - 14:51:44 CST)
- VMD stereo (Win/SGI) and graphics accelerators... (Wed Nov 29 2000 - 11:29:57 CST)
- Re: VMD 1.6a4 core dumps. (Thu Nov 23 2000 - 19:45:08 CST)
- Announce: VMD 1.6a4 is available (Tue Nov 21 2000 - 00:19:42 CST)
- Re: rending softwares for win98 (Fri Nov 17 2000 - 01:42:17 CST)
- Using VMD on Redhat 7.0 (Wed Nov 15 2000 - 11:29:07 CST)
- 2000 VMD Survey Report is up (Mon Nov 13 2000 - 18:08:44 CST)
- Re: vmd stereo (Mon Oct 30 2000 - 01:04:12 CST)
- Re: Selection (Tue Oct 17 2000 - 11:42:30 CDT)
- VMD Script Library pages updated... (Fri Oct 13 2000 - 14:39:38 CDT)
- Re: problem compiling on redhat 7.0 (Sun Oct 08 2000 - 22:49:58 CDT)
- Announce: VMD 1.6a3 is available (Fri Oct 06 2000 - 14:37:27 CDT)
- MSMS 2.5.3 is available for VMD users!! (Fri Oct 06 2000 - 09:25:38 CDT)
- Re: several questions, (Thu Oct 05 2000 - 16:43:57 CDT)
- Re: a few questions about VMD (Fri Sep 22 2000 - 16:34:17 CDT)
- Re: a few questions about VMD (Wed Sep 20 2000 - 19:55:26 CDT)
- Re: Building VMD under Windows 2000 (Mon Sep 18 2000 - 09:53:51 CDT)
- Re: parallel rendering across clusters? (Fri Sep 15 2000 - 18:18:53 CDT)
- Re: msms 2.5 and vmd? (Thu Sep 14 2000 - 13:25:48 CDT)
- Announce: VMD 1.6a2 is available (Thu Sep 14 2000 - 02:38:08 CDT)
- Re: File Selector in VMD1.6a1 (Wed Sep 13 2000 - 23:15:21 CDT)
- Re: viewing CHARMM trajectory (Wed Sep 13 2000 - 22:33:09 CDT)
- Re: viewing CHARMM trajectory (Wed Sep 13 2000 - 22:30:44 CDT)
- Re: nvidia woes. (Tue Sep 12 2000 - 11:04:08 CDT)
- Re: animation (Wed Aug 30 2000 - 13:00:24 CDT)
- Re: animation (Wed Aug 30 2000 - 11:06:03 CDT)
- Announce: VMD 1.6a1 is available (Thu Aug 24 2000 - 18:43:53 CDT)
- Re: vmd on redhat6.2 and elsa gladiac (Tue Aug 15 2000 - 22:11:05 CDT)
- Re: RMSD calculation/fit doesn't work? (Mon Aug 14 2000 - 18:58:34 CDT)
- Re: loading molecule from command line (Fri Jul 28 2000 - 15:11:02 CDT)
- Re: Erro compiling vmd and or fltk (Sun Jul 16 2000 - 14:12:10 CDT)
- Re: Spheres with OpenGL (was Re: linux graphics adapters?) (Sun Jul 16 2000 - 14:06:08 CDT)
- Re: linux graphics adapters? (Thu Jul 13 2000 - 12:50:58 CDT)
- Re: linux graphics adapters? (Thu Jul 13 2000 - 10:10:48 CDT)
- Re: Problems with VMD 1.5b1 and XFree4/DRI OpenGL under linux (Thu Jun 29 2000 - 15:12:53 CDT)
- VMD 1.5 is available! (Wed Jun 28 2000 - 15:46:17 CDT)
- Re: DCD command-line options (Wed Jun 28 2000 - 11:05:34 CDT)
- Re: Problems with VMD 1.5b1 and XFree4/DRI OpenGL under linux (Mon Jun 26 2000 - 15:57:45 CDT)
- Re: VMD command line Windows98 (Sun Jun 18 2000 - 10:59:25 CDT)
- Re: POV failure 2nd try (Fri May 26 2000 - 13:24:42 CDT)
- Re: VMD on XFree86 4.0 /w hardware acceleration... (Thu May 25 2000 - 22:14:34 CDT)
- VMD 1.5b1 is available! (Thu May 25 2000 - 14:18:24 CDT)
- Re: using trackers (Wed May 24 2000 - 09:54:10 CDT)
- VMD on XFree86 4.0 /w hardware acceleration... (Fri May 19 2000 - 18:22:39 CDT)
- Re: problem with vmd/namd connection on linux (Tue Apr 18 2000 - 18:49:25 CDT)
- VMD 1.5a2 is available... (Thu Apr 06 2000 - 17:50:42 CDT)
- Re: surface in raster3d (Thu Apr 06 2000 - 10:42:51 CDT)
- Re: MSMS help (Mon Apr 03 2000 - 15:19:25 CDT)
- Re: Stereo on Linux? (Fri Mar 17 2000 - 16:18:09 CST)
- VMD 1.5a1 is available... (Fri Mar 17 2000 - 10:01:47 CST)
- Re: MSMS in VMD (Fri Mar 17 2000 - 09:16:16 CST)
- Re: SGI O2 stereo problems (Wed Mar 08 2000 - 15:04:34 CST)
- Re: Graphics algorithm (fwd) (Wed Mar 01 2000 - 09:30:42 CST)
- Re: msms & vmd (Fri Feb 18 2000 - 12:11:25 CST)
- Re: script for generating stereo postscript images (Fri Feb 11 2000 - 15:55:06 CST)
- Re: Stereo on SGI Indigo2? - Linux? (Wed Jan 19 2000 - 11:09:23 CST)
- Re: 6DOF controllers (Sat Jan 08 2000 - 21:23:23 CST)
- VMD 1.4 Released (long) (Fri Jan 07 2000 - 17:59:02 CST)
John Young
- Beginner's problem (Tue Nov 14 2006 - 11:20:01 CST)
Jon Savian
- Trouble installing VMD (Tue Jan 10 2006 - 17:54:34 CST)
jonathan
- Re: Color wheel gradient (Fri Mar 25 2011 - 09:03:34 CDT)
- Combined "Within" atom selection (Mon Oct 11 2010 - 11:59:08 CDT)
- Re: Writing Python Plugins properly (Wed Aug 11 2010 - 06:54:10 CDT)
- Writing Python Plugins properly (Mon Aug 09 2010 - 11:48:25 CDT)
Jonathan Ashar
- trajectory file format (Tue Jul 25 2006 - 12:31:00 CDT)
JONATHAN BLACK
- dcd format (Wed Oct 22 2008 - 04:30:19 CDT)
- (no subject) (Tue Oct 21 2008 - 04:16:29 CDT)
jonathan KHAO
- Re: IMD - remove forces on mouse release (Sun Apr 08 2012 - 15:50:44 CDT)
- IMD - remove forces on mouse release (Sun Apr 08 2012 - 13:05:45 CDT)
- Color wheel gradient (Tue Mar 22 2011 - 12:57:08 CDT)
Joost Van Durme
- GeForce FX5800 and VMD 1.8.1 (Thu Jun 05 2003 - 12:19:59 CDT)
Jordi Cohen
- Re: question about ligand volmap (Wed Jun 27 2007 - 11:29:31 CDT)
- Re: volmap commands (Wed Jun 20 2007 - 21:56:08 CDT)
- Re: Nanotube Simulations (Tue Aug 02 2005 - 14:41:03 CDT)
- Re: autoimd error (Wed Jun 15 2005 - 13:13:25 CDT)
- Re: AutoIMD and fixedatoms (Tue Feb 01 2005 - 12:32:38 CST)
- Re: Auto IMD (Mon Jan 24 2005 - 14:27:49 CST)
Jordi Faraudo
- UPDATE OCCUPANCY (Fri Nov 11 2011 - 06:04:50 CST)
Jorge Hernandez Fernandez
- Hinge calculation in MD trajectory using Hingefind plug-in (Mon Feb 11 2008 - 13:02:59 CST)
- (xterm: Command not found) error (Wed Apr 12 2006 - 14:14:58 CDT)
- Re: bad resolution and too slow on mandrake 10.0 (Fri May 27 2005 - 14:50:09 CDT)
Jorge Hernanez Fernandez
- Stride problems in XP.... (Tue Dec 02 2003 - 11:52:19 CST)
Jorge Pikunic
- H-H bond in solvate (Wed Jul 27 2005 - 14:25:09 CDT)
- loading two dcd files in VMD (Mon Apr 18 2005 - 10:40:51 CDT)
- CMAP and psfgen (Fri Oct 08 2004 - 12:38:47 CDT)
- Re: problem (Fri Oct 08 2004 - 10:29:25 CDT)
- VMD and XP (Wed Oct 22 2003 - 14:40:23 CDT)
Jorgen Simonsen
- bash scripts quits after few frames (Tue Nov 22 2011 - 03:55:02 CST)
- run and close vmd with bash script? (Wed May 18 2011 - 07:04:26 CDT)
- convert prmtop to psf (Tue May 17 2011 - 04:17:33 CDT)
- psf gen charmm format (Wed Sep 22 2010 - 06:18:45 CDT)
- hydrophobic accessible surface area (Tue Aug 24 2010 - 13:55:20 CDT)
- lowest energy structure (Mon Jul 19 2010 - 22:52:59 CDT)
- rotate dihedral angle (Mon Sep 14 2009 - 14:08:21 CDT)
- Re: Mac and cmd line (Mon Aug 24 2009 - 17:50:49 CDT)
- Mac and cmd line (Mon Aug 24 2009 - 11:58:16 CDT)
- python and vmd (Wed Jul 15 2009 - 04:23:12 CDT)
- Dihedrale angles in VMD (Thu Jul 03 2008 - 07:43:07 CDT)
- Re: topology files L/D form (Mon Apr 14 2008 - 12:55:11 CDT)
- topology files L/D form (Mon Apr 14 2008 - 04:50:08 CDT)
- Re: no convergence in align (Fri Feb 29 2008 - 12:15:49 CST)
- no convergence in align (Fri Feb 29 2008 - 07:03:18 CST)
- how to set molinfo from python (Tue Feb 19 2008 - 02:03:16 CST)
- rmsd different from rmsd implemented in VMD (Wed Feb 13 2008 - 10:18:19 CST)
Jos Aerts
- VMD 1.8 on Windows2000 to crash when executing simple scripts (Thu May 15 2003 - 07:10:50 CDT)
Jose Dinto
- Unable to ionize a solvated structure using autoionization (Mon Jul 24 2006 - 09:56:41 CDT)
Jose Borreguero
- Re: saving dcd file different if by script or by interactive mode (Tue Apr 10 2012 - 18:23:01 CDT)
- saving dcd file different if by script or by interactive mode (Tue Apr 10 2012 - 17:32:11 CDT)
JOSE MANUEL ROMO HERRERA
- Updating color_scale_bar_new.tcl (Tue Nov 08 2005 - 13:19:08 CST)
Josef Scheiber
- Re: Sybyl trajectory (Tue Sep 06 2005 - 05:38:38 CDT)
- Sybyl trajectory (Mon Sep 05 2005 - 01:56:04 CDT)
Joseph Antoine Garate
- Parse Fep plugin error (Fri Dec 23 2011 - 08:27:39 CST)
Joseph Bylund
- mono2poly question (Sun Feb 26 2012 - 23:24:00 CST)
- Re: Coloring by RMSD during trajectory (Wed Feb 01 2012 - 23:49:19 CST)
- Query Fields (Tue Jan 31 2012 - 08:32:40 CST)
- Coloring by RMSD during trajectory (Fri Jan 06 2012 - 11:40:27 CST)
- Re: coloring bonds on the same segments differently from those between segments (Thu Oct 20 2011 - 20:13:59 CDT)
- Display Multiple Bond Order (Wed Jun 29 2011 - 11:57:50 CDT)
- Re: Aligning two proteins of varying atom numbers (Thu May 19 2011 - 11:31:52 CDT)
- moving rotational center to display center (Tue Apr 12 2011 - 12:01:27 CDT)
- Re: script for projection of c-alpha atom cordinates on xy plane (Fri Mar 18 2011 - 13:39:37 CDT)
- Re: Re: VMD 1.9 beta 1 posted for download... (Fri Feb 18 2011 - 11:19:38 CST)
- surface representation question (Wed Dec 08 2010 - 12:15:02 CST)
- Re: 3D protein visualization (Mon Nov 08 2010 - 18:39:42 CST)
- Re: Regarding merging of two files (Wed Nov 03 2010 - 13:08:21 CDT)
- Re: Distance lines (Thu Sep 09 2010 - 16:46:55 CDT)
- representation question (Mon Apr 26 2010 - 14:01:40 CDT)
- Re: Coloring atoms based on timeframe range? (Thu Apr 22 2010 - 10:04:08 CDT)
- rmsd trajectory tool question (Tue Apr 20 2010 - 13:23:07 CDT)
- Re: how to pick certain water molecular from a .mdcrd (Tue Apr 13 2010 - 05:30:48 CDT)
- Re: Installing VMD (Tue Mar 16 2010 - 13:22:27 CDT)
- Re: problems displaying newcartoon representation (Thu Nov 12 2009 - 12:43:24 CST)
- Problems with selecting atoms for representations (Tue Oct 13 2009 - 10:39:52 CDT)
Joseph E. Curtis
- ATOM or HETATM record (Fri Jan 07 2005 - 16:46:16 CST)
- VMDNUMPY and OS X (Panther) (Thu Dec 16 2004 - 15:40:16 CST)
Joseph Edward Curtis
- Suggested graphic card :: LINUX (Mon Mar 03 2003 - 10:07:19 CST)
Joseph Fernandez
- Re: uncompress files in tcl script (Thu Feb 09 2006 - 14:56:51 CST)
- uncompress files in tcl script (Thu Feb 09 2006 - 09:55:05 CST)
- VMD crashes with FX440 and RH Entreprise 4.0 (Tue Sep 06 2005 - 09:52:07 CDT)
- Error when running ied.py (Fri Jul 08 2005 - 09:50:59 CDT)
Joseph Landman
- building VMD on SGI IRIX 6.x (Wed Mar 26 1997 - 11:55:35 CST)
Joseph Norris
- install on Centos - issues (Fri Jul 23 2010 - 18:48:04 CDT)
Josh Ward
- Re: TCL atomselect bug (Tue Mar 29 2005 - 14:47:27 CST)
- Re: TCL atomselect bug (Tue Mar 29 2005 - 09:36:39 CST)
- TCL atomselect bug (Thu Mar 24 2005 - 15:49:44 CST)
- Re: Webpdb crashing (Fri Apr 16 2004 - 11:43:18 CDT)
- Re: Webpdb crashing (Fri Apr 16 2004 - 11:57:58 CDT)
- Re: Webpdb crashing (Fri Apr 16 2004 - 11:59:18 CDT)
- Webpdb crashing (Fri Apr 16 2004 - 09:24:41 CDT)
- COR plugin for SGI (Fri Mar 05 2004 - 08:27:57 CST)
- Color error on loading (Tue Mar 02 2004 - 14:30:51 CST)
- CHARMM CRD files: COR plugin (Fri Dec 12 2003 - 14:52:22 CST)
Joshua A. Anderson
- Re: Re: CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? (Wed Jan 25 2012 - 14:50:27 CST)
- Re: Re: CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? (Thu Jan 19 2012 - 14:02:42 CST)
- Re: Re: CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? (Thu Jan 19 2012 - 12:47:21 CST)
- Re: rlwrap problem on (Tue Nov 01 2011 - 13:46:10 CDT)
- Re: color trajectory using specific values rather than color scale (Mon Jun 27 2011 - 11:50:44 CDT)
- Re: X3DOM sphere resolution (Wed Apr 13 2011 - 11:34:52 CDT)
- X3DOM sphere resolution (Wed Apr 13 2011 - 07:09:37 CDT)
- Re: VMD 1.9 builds on MACOSXX86_64 (Fri Mar 25 2011 - 12:54:56 CDT)
- VMD 1.9 builds on MACOSXX86_64 (Tue Mar 22 2011 - 08:55:00 CDT)
- Re: GLSL with ATI 5750 in Mac OS X 10.6 / 64-bit build (Thu Jan 27 2011 - 06:35:56 CST)
- GLSL with ATI 5750 in Mac OS X 10.6 / 64-bit build (Wed Jan 26 2011 - 14:17:05 CST)
- Re: maximum trajectory size? (Thu Sep 09 2010 - 06:50:43 CDT)
- Re: OSX 10.6 support? (Tue Aug 24 2010 - 07:00:36 CDT)
Joshua A. Speidel
- Periodic Images (Fri Mar 19 2004 - 14:10:07 CST)
Joshua Adelman
- Re: problem with catdcd (Sun Feb 12 2012 - 08:38:22 CST)
- Re: to use tcl script in command line (Thu Dec 08 2011 - 07:32:08 CST)
- Re: Server for structural models of the unfolded state of proteins (Fri Feb 25 2011 - 20:53:53 CST)
- Re: removing all water molecules (Thu Jan 27 2011 - 08:24:09 CST)
- Re: orientation of protein molecule (Wed Jan 05 2011 - 19:59:46 CST)
- Re: regarding counting water molecules (Wed Dec 22 2010 - 07:26:33 CST)
- Re: selection of amino acids with certain distance each others (Sun Dec 19 2010 - 15:00:40 CST)
- Re: delete water molecules (Sat Dec 18 2010 - 09:07:59 CST)
- Re: delete water molecules (Fri Dec 17 2010 - 10:31:41 CST)
- Re: Water molecules within a definite radius (Mon Nov 15 2010 - 17:06:05 CST)
- Re: Script for counting water molecules (Mon Nov 08 2010 - 15:26:02 CST)
- Re: regarding merging of protein and a ligand (Sat Nov 06 2010 - 18:03:19 CDT)
- Re: Regarding merging of two files (Wed Nov 03 2010 - 13:44:08 CDT)
- Re: PCA analysis of NAMD dcd files (Tue Oct 19 2010 - 07:30:16 CDT)
- Re: write pdbs of selected frames of a trajectory (Wed Sep 22 2010 - 15:52:11 CDT)
- Re: visualizing small molecule in a trajectory file .trr and .gro using VMD (Sat Jun 05 2010 - 08:16:16 CDT)
- Re: namd-l: Error in running minimization (Fri May 21 2010 - 07:56:06 CDT)
- Re: namd gui problem (Tue May 11 2010 - 07:26:58 CDT)
- Re: (Mon Mar 15 2010 - 19:56:04 CDT)
- Re: superimposed structure (Tue Dec 15 2009 - 07:15:52 CST)
- Re: About "Visualization and Analysis of CPMD data with VMD" tutorial (Thu Dec 10 2009 - 05:29:17 CST)
- Re: porcupine plots for PC1 (Mon Dec 07 2009 - 06:49:11 CST)
- Re: porcupine plots for PC1 (Sun Dec 06 2009 - 15:22:06 CST)
- Re: Move molecule to the origin of coordinate system (Wed Nov 25 2009 - 12:46:13 CST)
- Re: parent molecule (Wed Nov 18 2009 - 11:43:00 CST)
- Re: polymer bead spring model file format (Wed Nov 18 2009 - 06:48:36 CST)
- Re: parent molecule (Sun Nov 15 2009 - 07:06:58 CST)
- Re: parent molecule (Sat Nov 14 2009 - 07:47:23 CST)
- Solvate-GUI Problem: Collapses Solvent to Origin (Mon Oct 26 2009 - 20:03:37 CDT)
- Re: MDFF sim Problem (Sat Oct 24 2009 - 22:42:12 CDT)
- Re: MDFF sim Problem (Sun Oct 18 2009 - 22:19:28 CDT)
- MDFF sim Problem (Fri Oct 16 2009 - 16:20:03 CDT)
Joshua Anderson
- Re: Colouring atoms named with the same first letter (Fri Apr 16 2010 - 12:25:47 CDT)
- Re: Colouring atoms named with the same first letter (Fri Apr 16 2010 - 11:09:23 CDT)
- Re: Trouble building VMD 1.8.7 on Mac OS X (Thu Feb 04 2010 - 10:04:53 CST)
- Re: Trouble building VMD 1.8.7 on Mac OS X (Thu Feb 04 2010 - 07:26:10 CST)
- Trouble building VMD 1.8.7 on Mac OS X (Wed Feb 03 2010 - 15:39:52 CST)
Joshua D. Moore
- 7th Industrial Fluid Properties Simulation Challenge (Wed May 23 2012 - 11:22:23 CDT)
- Re: Re: CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? (Wed Jan 11 2012 - 19:09:50 CST)
- CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? (Fri Dec 30 2011 - 19:07:05 CST)
- Re: CUDA driver for Mac OS X 10.7 on Late 2008 13 inch Macbook with NVIDA GeForce 9400M 256 MB ? (Fri Dec 30 2011 - 19:30:45 CST)
- Re: Change Color Scale (Wed Dec 21 2011 - 15:49:50 CST)
- Change Color Scale (Wed Dec 21 2011 - 13:57:10 CST)
- Re: Assign velocities so I can color by velocity (Mon Dec 19 2011 - 20:54:02 CST)
- Re: Assign velocities so I can color by velocity (Mon Dec 19 2011 - 12:26:57 CST)
- Assign velocities so I can color by velocity (Mon Dec 19 2011 - 10:48:36 CST)
- Re: convert .coor to pdb (Mon Sep 26 2011 - 09:12:09 CDT)
- Re: VMD on MacOSX 10.6 Snow Leopard: fast (Mon Aug 31 2009 - 22:20:51 CDT)
- Re: tinkerxyz (Sat Aug 29 2009 - 02:26:29 CDT)
- Re: using VMD 1.8.7 on a Mac (Mon Aug 24 2009 - 21:49:10 CDT)
- HRTEM (Fri Aug 07 2009 - 02:20:45 CDT)
- Re: pbcunwrap, DL_POLY v 3 (Wed May 09 2007 - 11:27:29 CDT)
- pbcunwrap, DL_POLY v 3 (Wed May 09 2007 - 01:37:14 CDT)
- Anyone have catdcd-4.0 for BlueGene? (Mon Jan 08 2007 - 15:34:09 CST)
- 64 bit NAMD on AIX and CatDCD (Sat Jan 21 2006 - 13:22:11 CST)
- Re: Can VMD add other solvent except water in system? (Mon Sep 26 2005 - 06:21:38 CDT)
- Re: Draw Bonds (Mon Aug 08 2005 - 14:48:05 CDT)
- Re: White background (Mon Jul 25 2005 - 17:03:08 CDT)
- Re: Re: namd-l: catdcd and dcdunitcell (Mon Jul 25 2005 - 14:16:16 CDT)
- Re: namd-l: catdcd and dcdunitcell (Fri Jul 22 2005 - 16:04:00 CDT)
- SPC/E Water Model and RigidBonds (Fri Jul 08 2005 - 15:46:41 CDT)
Joshua Speidel
- Summing volumetric data within a sub-volume of a simulation cell (Thu Mar 02 2006 - 17:41:23 CST)
- Charmm expanded coordinate file format? (Thu Dec 22 2005 - 19:30:51 CST)
- aligntool docs?... (Tue Jan 21 2003 - 15:03:36 CST)
Josiah Zayner
- VMD Crashes on Windows Vista when trying to load more than 5000 steps (Mon Jul 19 2010 - 09:37:51 CDT)
jouko_at_berkeley.edu
- Re: Large dcd file (Tue Jan 06 2009 - 22:32:51 CST)
- Large dcd file (Tue Jan 06 2009 - 16:31:46 CST)
jouko_at_uchicago.edu
- DPPC (Thu Jul 08 2010 - 22:21:25 CDT)
joy tehrani
- Diffusion Constant (Wed Mar 12 2008 - 17:44:52 CDT)
- RMSD trajectory Tool (Thu Mar 06 2008 - 06:45:35 CST)
Joyce Tan
- cropping the missing residues from other PDB file (Mon Jun 13 2011 - 09:37:14 CDT)
- Adding missing residues (Thu Jun 09 2011 - 01:50:05 CDT)
- saving dcd with less frames (Tue Jun 07 2011 - 04:39:35 CDT)
- Re: only one model is displayed (Fri Feb 11 2011 - 10:50:31 CST)
- only one model is displayed (Fri Feb 11 2011 - 09:56:39 CST)
- Plotting potential energy (Thu Dec 09 2010 - 03:36:19 CST)
- Adding cadmium into protein (Wed Oct 20 2010 - 01:55:36 CDT)
- Re: problem at convert single trajectory frame to pdb (Tue Oct 19 2010 - 22:41:27 CDT)
- Re: problem at convert single trajectory frame to pdb (Tue Oct 19 2010 - 21:58:16 CDT)
- Re: problem at convert single trajectory frame to pdb (Tue Oct 19 2010 - 12:38:24 CDT)
- Re: problem at convert single trajectory frame to pdb (Tue Oct 19 2010 - 11:58:00 CDT)
- Re: problem at convert single trajectory frame to pdb (Tue Oct 19 2010 - 11:04:36 CDT)
- problem at convert single trajectory frame to pdb (Tue Oct 19 2010 - 10:36:43 CDT)
- protein breaks into parts after converting trajectory file to pdb file (Mon Sep 27 2010 - 04:58:48 CDT)
- Re: superimpose residues across several protein structures (Wed Sep 22 2010 - 10:20:00 CDT)
- superimpose residues across several protein structures (Wed Sep 22 2010 - 08:02:18 CDT)
- adding a metal ion (Tue Sep 21 2010 - 20:39:43 CDT)
João Ribeiro
- New Multi-platform Surface and volume Calculator (Mon Jul 04 2011 - 16:06:53 CDT)
jrui_at_ci.uc.pt
- Re: complete residues within (Thu Mar 06 2008 - 03:02:28 CST)
- Re: couldn't fork child process: not enough memory (Fri Feb 22 2008 - 08:41:54 CST)
- Re: couldn't fork child process: not enough memory (Fri Feb 22 2008 - 05:13:16 CST)
- couldn't fork child process: not enough memory (Thu Feb 21 2008 - 13:47:06 CST)
- Re: Re: the script do not update the frame number for secondary structure analysis (Mon Feb 11 2008 - 04:55:39 CST)
- Re: the script do not update the frame number for secondary structure analysis (Mon Feb 11 2008 - 03:10:25 CST)
- Re: Re: Re: output of the ssrecalc command (Sat Feb 09 2008 - 08:53:39 CST)
- Re: Re: output of the ssrecalc command (Sat Feb 09 2008 - 07:03:45 CST)
- Re: output of the ssrecalc command (Sat Feb 09 2008 - 04:50:46 CST)
- Re: problem with sidechian representation (Mon Jan 21 2008 - 04:28:00 CST)
- psfgen crashes VMD (Thu Jun 06 2002 - 19:55:28 CDT)
- Problem with instalation process (Thu Jun 06 2002 - 19:03:09 CDT)
jsu_at_its.caltech.edu
- support for multi-frame XYZ files? (Mon Aug 25 2003 - 23:59:50 CDT)
JT
- Re: Color by position behavior (Sun Nov 29 2009 - 08:23:06 CST)
- Color by position behavior (Sun Nov 29 2009 - 02:59:31 CST)
- Re: Mac and cmd line (Mon Aug 24 2009 - 17:27:44 CDT)
- VMD 1.8.7 Beta 5 -- Possible bug when typing in the VMD menu boxes. (Mon Jun 01 2009 - 17:29:07 CDT)
- Re: Spaceball and OSX (Tue Apr 21 2009 - 13:15:22 CDT)
- Re: Spaceball and OSX (Tue Apr 21 2009 - 12:53:31 CDT)
- Spaceball and OSX (Tue Apr 21 2009 - 12:30:04 CDT)
- Re: Rendering electrostatic surface potentials using Tachyon (Thu Apr 09 2009 - 15:14:41 CDT)
- Re: too many bonds (Sun Apr 05 2009 - 03:06:17 CDT)
- Re: Posting messages to VMD-L truncates the empty spaces in lines (Tue Mar 17 2009 - 22:05:43 CDT)
- Re: Posting messages to VMD-L truncates the empty spaces in lines (Mon Mar 16 2009 - 20:31:09 CDT)
- Posting messages to VMD-L truncates the empty spaces in lines (Sun Mar 15 2009 - 18:58:01 CDT)
- Re: how to find the sign of the dihedral angle (full message). (Sat Mar 14 2009 - 03:21:33 CDT)
- Re: get a PDB file from DCD file (Tue Jan 27 2009 - 11:01:41 CST)
- Re: Re: How to change title of display window? (Mon Jan 26 2009 - 12:26:30 CST)
- Re: How to change title of display window? (Sun Jan 25 2009 - 20:09:35 CST)
Juan Alfredo Freites
- Re: configure do nothing (Linux) (Wed Mar 31 2004 - 12:04:28 CST)
- veclength (Mon Feb 16 2004 - 21:54:55 CST)
- Re: tcl question (Sat Feb 07 2004 - 12:28:18 CST)
- Re: remote display (Thu Dec 11 2003 - 12:28:18 CST)
- remote display (Sat Dec 06 2003 - 23:16:38 CST)
- unit cell (Mon Nov 10 2003 - 14:43:42 CST)
Juan Antonio Raygoza Garay
- Batch image creation (Fri Nov 04 2011 - 16:59:57 CDT)
Juan de Dios Lopez Castro
- error Autoimd (Thu Jun 15 2006 - 04:04:02 CDT)
- error. Autoimd (Thu Jun 01 2006 - 05:21:51 CDT)
Juan Diaz
- Correlation Functions (Tue Dec 12 2006 - 14:39:52 CST)
- Correlation Functions (Tue Dec 12 2006 - 13:29:49 CST)
juan jesus sanchez sanchez
- how to put two identical proteins in a same water sphere? (Mon Aug 22 2011 - 13:06:12 CDT)
- problem merging two identical proteins (Wed May 18 2011 - 12:32:09 CDT)
juan roman
- how to update the selection in NAMDEnergy (Tue Feb 08 2011 - 20:02:15 CST)
Jufang Shan
- Re: VMD crashes on displaying NewRibbons or New Cartoon (Wed Nov 12 2008 - 20:48:17 CST)
- VMD crashes on displaying NewRibbons or New Cartoon (Fri Oct 31 2008 - 10:13:32 CDT)
- membrane plugin | lipid structures (Fri Jul 25 2008 - 11:50:18 CDT)
- Re: measure sasa gives different results on different platforms (Thu May 08 2008 - 11:26:38 CDT)
- Re: measure sasa gives different results on different platforms (Wed May 07 2008 - 23:04:19 CDT)
- measure sasa gives different results on different platforms (Wed May 07 2008 - 15:52:47 CDT)
- Re: Re: monitor helicity change (Fri Feb 22 2008 - 11:37:55 CST)
- Re: monitor helicity change (Fri Feb 22 2008 - 11:40:52 CST)
- monitor helicity change (Thu Feb 21 2008 - 19:06:14 CST)
Julia Doh
- Re: TCL Callbacks (Wed Mar 30 2011 - 15:33:28 CDT)
- TCL Callbacks (Wed Mar 16 2011 - 13:45:31 CDT)
Julie Grouleff
- Extra bond in TIP3 water (Wed Mar 09 2011 - 04:56:53 CST)
- RE: VMD 1.9 beta 1 posted for download... (Thu Feb 17 2011 - 09:21:49 CST)
Jumper, John
- Weighted RMS fit bug (Thu Feb 26 2009 - 12:21:15 CST)
jun
- about viewing charge density (Sun Apr 02 2006 - 14:00:58 CDT)
Jun Cheng
- Re: problem on making a movie (Wed Mar 16 2011 - 18:16:44 CDT)
- Re: problem on making a movie (Tue Mar 15 2011 - 08:42:09 CDT)
- Re: problem on making a movie (Fri Mar 11 2011 - 12:26:13 CST)
- Re: problem on making a movie (Fri Mar 11 2011 - 09:36:49 CST)
- problem on making a movie (Fri Mar 11 2011 - 04:42:34 CST)
- convert unformatted delphi phi to formatted (Wed Feb 10 2010 - 10:09:55 CST)
- cube file question (Fri Jan 09 2009 - 05:12:20 CST)
Jun Zhao
- the IR spetra calculation module - from MD trajectory (Sat Jan 01 2011 - 15:12:48 CST)
JunJun Liu
- where's the download link for one specific plugin? (Wed Jun 07 2006 - 12:26:41 CDT)
Jure Praznikar
- charmm binary ele. pot. (Sun Mar 08 2009 - 11:36:47 CDT)
Justin
- Re: Unable to create OpenGL window for vmd starting (Mon Jun 20 2005 - 18:36:36 CDT)
- Re: Unable to create OpenGL window for vmd starting (Mon Jun 20 2005 - 11:52:52 CDT)
- Unable to create OpenGL window for vmd starting (Mon Jun 20 2005 - 10:57:55 CDT)
- Re: vmd version for solaris 8 (Mon Jun 20 2005 - 09:54:14 CDT)
- Fwd: Re: vmd version for solaris 8 (Sat Jun 18 2005 - 11:19:32 CDT)
- vmd version for solaris 8 (Fri Jun 17 2005 - 16:29:48 CDT)
Justin Gullingsrud
- Re: translations with fixed and unfixed molecules (Tue Apr 13 1999 - 13:37:00 CDT)
- Re: desmond plug-in error (Mon Nov 30 2009 - 16:35:13 CST)
- Re: ViewMaster and rendering (Thu Aug 02 2007 - 19:13:55 CDT)
- Re: question about measure contacts (Thu Aug 02 2007 - 15:16:01 CDT)
- Re: Python Module (Fri Jun 08 2007 - 09:43:50 CDT)
- Re: Writing pdb without chain identifier (Wed Dec 27 2006 - 20:57:25 CST)
- Re: Writing pdb without chain identifier (Wed Dec 27 2006 - 09:11:07 CST)
- Re: VMD using CygWin? (Wed Dec 20 2006 - 08:42:13 CST)
- Re: Ramachandran Map of 2 pdbs (Fri Sep 08 2006 - 14:50:35 CDT)
- Re: Matrix inverse (Tue Sep 05 2006 - 18:39:37 CDT)
- Re: some parameters for TIP3P (Fri Jul 21 2006 - 16:36:53 CDT)
- Re: python math library (Sun Apr 16 2006 - 21:32:48 CDT)
- Re: python math library (Wed Apr 12 2006 - 19:02:22 CDT)
- Re: How to efficiently update a surface (Tue Nov 29 2005 - 11:25:10 CST)
- Re: Uncharged terminal ends? (Mon Nov 21 2005 - 11:49:19 CST)
- Re: Uncharged terminal ends? (Sun Nov 20 2005 - 15:12:11 CST)
- Re: passing parameters to a tcl script (Sat Oct 01 2005 - 15:26:00 CDT)
- Re: Lipid Order Parameter (Fri Sep 23 2005 - 11:13:16 CDT)
- Re: Lipid Order Parameter (Wed Sep 21 2005 - 12:26:37 CDT)
- Re: Lipid Order Parameter (Wed Sep 21 2005 - 12:26:12 CDT)
- Re: setting different colors (Sun Aug 21 2005 - 15:55:04 CDT)
- Re: catdcd vs readdcd.h error checking (Fri Aug 19 2005 - 18:56:52 CDT)
- Re: Periodic boundary conditions (Thu Aug 18 2005 - 13:43:38 CDT)
- Re: display hexagonal periodic system (Wed Aug 10 2005 - 19:21:02 CDT)
- Re: Atom renumbering in DCD file (Tue Aug 09 2005 - 13:30:08 CDT)
- Re: Fitting trajectory frames to another molecule (Mon Jul 18 2005 - 20:22:51 CDT)
- Re: Python interface (was: Accessing TCL through Python interface) (Fri May 20 2005 - 14:30:06 CDT)
- Re: about tcl program and run tcl script in namd (Sat Apr 16 2005 - 16:42:52 CDT)
- Re: VMD and Interactive Essential Dynamics (IED) (Tue Mar 22 2005 - 11:40:52 CST)
- Re: GRD file format (Tue Mar 22 2005 - 11:44:16 CST)
- Re: GRD file format (Tue Mar 22 2005 - 13:24:26 CST)
- Re: # of waters limit (Tue Mar 22 2005 - 18:09:26 CST)
- Re: Display only side chains (Tue Mar 08 2005 - 10:33:32 CST)
- Re: [bigdcd.tcl] How to stream output to file (Thu Mar 03 2005 - 10:33:45 CST)
- Re: VMD, NAMD and Interactive Essential Dynamics (IED) (Tue Feb 22 2005 - 13:22:26 CST)
- Re: Calling Python hackers.... (Fri Feb 04 2005 - 17:50:58 CST)
- Re: prefferential adsorption analysis (Thu Feb 03 2005 - 12:41:25 CST)
- Re: prefferential adsorption analysis (Wed Feb 02 2005 - 11:41:19 CST)
- Re: Closing filehandles in vmd tcl script (Fri Jan 21 2005 - 01:28:42 CST)
- Re: Rotating and translating molecules .. (Wed Jan 19 2005 - 16:34:00 CST)
- Re: Rotating and translating molecules .. (Tue Jan 18 2005 - 20:56:22 CST)
- Re: Deleting atomselect selections for proper memory management (Wed Jan 12 2005 - 11:08:15 CST)
- Re: how to represent H-bonds between chain A and chain B using VMD (Wed Jan 05 2005 - 10:29:51 CST)
- Re: can I combine several dcd files into one dcd file? (Wed Jan 05 2005 - 10:30:56 CST)
- Re: Tube representation of alpha carbons (Wed Dec 08 2004 - 12:22:50 CST)
- Re: Re: namd-l: Writing pdb file.. easier way? (Tue Nov 23 2004 - 14:45:15 CST)
- Re: Solvate and VMD on OS X (Sat Nov 13 2004 - 12:25:45 CST)
- Re: VMD newbie question (Fri Nov 12 2004 - 00:28:22 CST)
- Re: writepdb and list problem (Thu Nov 11 2004 - 11:57:24 CST)
- Re: bridging_waters.tcl error and usage (Mon Nov 08 2004 - 13:04:00 CST)
- Re: bridging_waters.tcl error and usage (Mon Nov 08 2004 - 12:51:05 CST)
- Re: python2.3 and vmd (Fri Oct 29 2004 - 00:23:29 CDT)
- Re: Question about using psfgen on protein 4HVP (Tue Oct 26 2004 - 18:46:21 CDT)
- Re: python2.3 and vmd (Tue Oct 26 2004 - 18:38:05 CDT)
- Re: Changing the rotation and centering matrix of a molecule (Wed Oct 13 2004 - 13:29:24 CDT)
- Re: Align a PORTION of several structures (Thu Oct 14 2004 - 09:54:45 CDT)
- Re: Basic VMD questions... (Sun Oct 10 2004 - 10:19:17 CDT)
- Re: measure fit error?? (Sat Oct 09 2004 - 00:41:49 CDT)
- Re: CMAP and psfgen (Fri Oct 08 2004 - 14:57:48 CDT)
- Re: measure fit error?? (Fri Oct 08 2004 - 14:26:10 CDT)
- Re: Basic VMD questions... (Thu Oct 07 2004 - 22:02:22 CDT)
- Re: problems with vecdist in accepting variables (Tue Sep 21 2004 - 12:43:23 CDT)
- Re: Counting number of hydrogen bonds in the representation (Wed Sep 15 2004 - 07:30:39 CDT)
- Re: Protonated GLU/ASP in PSF generation (Sun Aug 29 2004 - 21:01:52 CDT)
- Re: analysis scripts: VMD text /batch mode (Tue Aug 10 2004 - 13:31:01 CDT)
- Re: How i can changue the charge of my protein (Mon Aug 02 2004 - 16:06:43 CDT)
- Re: "measure fit" inaccuracy? (Fri Jun 11 2004 - 10:07:54 CDT)
- Re: VMD: Potential Energy Calculation (Fri May 07 2004 - 12:49:37 CDT)
- Re: Selection problem on TkCon (Tue May 04 2004 - 15:07:44 CDT)
- Re: Selection problem on TkCon (Mon May 03 2004 - 10:46:33 CDT)
- Re: Selection problem on TkCon (Mon May 03 2004 - 03:35:50 CDT)
- Re: Memory leak using "moveby" command inside a loop (Thu Apr 15 2004 - 13:22:08 CDT)
- Re: How to save trajectory using Tcl commands? (Thu Apr 15 2004 - 14:05:59 CDT)
- Re: center selection problem (Sat Apr 10 2004 - 13:48:19 CDT)
- Re: TCL string operation (Sat Apr 03 2004 - 09:27:12 CST)
- Re: Adding Atoms in Colors Menu (Fri Apr 02 2004 - 10:18:01 CST)
- Re: draw command (Thu Apr 01 2004 - 11:17:30 CST)
- Re: VECSUB function (Tue Mar 30 2004 - 17:53:44 CST)
- Re: Atom typing (Tue Mar 30 2004 - 14:59:54 CST)
- Re: density profile (Tue Mar 16 2004 - 16:36:08 CST)
- Re: Sine Cosine (Sun Mar 14 2004 - 11:02:12 CST)
- Re: VMD as command line interface (Thu Mar 11 2004 - 09:25:32 CST)
- Re: Coloring based on POS (Thu Mar 11 2004 - 08:18:16 CST)
- Re: Coloring based on POS (Thu Mar 11 2004 - 08:23:31 CST)
- Re: numeric python (Mon Mar 08 2004 - 09:49:27 CST)
- Re: waters within hydrophobic pore of protein (Mon Mar 01 2004 - 03:35:20 CST)
- Re: veclength (Thu Feb 19 2004 - 12:45:52 CST)
- Re: adding bonds between segments (Thu Feb 19 2004 - 12:28:52 CST)
- Re: adding waters only in top of lipid (Thu Feb 19 2004 - 12:30:36 CST)
- Re: Apple VMD not showing gro file properly (Fri Feb 13 2004 - 09:50:21 CST)
- Re: Helical Tilt Angle (Wed Jan 28 2004 - 11:23:15 CST)
- Re: xplor vs. charmm PSF files / psfgen (Thu Dec 04 2003 - 01:17:52 CST)
- New version of CatDCD available (Thu Nov 20 2003 - 15:36:57 CST)
- Re: about resid (Thu Nov 20 2003 - 12:16:35 CST)
- Re: Naming in XmGrace (Wed Nov 19 2003 - 11:21:08 CST)
- Re: Naming in XmGrace (Tue Nov 18 2003 - 11:26:41 CST)
- Re: Reading in unit cell (Mon Nov 17 2003 - 22:15:14 CST)
- Re: secondary structure update (Fri Oct 31 2003 - 11:09:39 CST)
- Re: Running VTK from VMD's python (Thu Oct 30 2003 - 09:29:46 CST)
- Re: aminoacid mutation (Tue Oct 28 2003 - 10:55:42 CST)
- Re: opdating the selection during trajectory (Mon Oct 06 2003 - 09:24:48 CDT)
- Re: python support and pipes in vmd (Tue Sep 30 2003 - 16:48:47 CDT)
- Re: showing all vmd output (Thu Sep 18 2003 - 16:36:33 CDT)
- Re: simple question (Tue Sep 02 2003 - 19:35:05 CDT)
- Re: need urgent help (Sat Aug 30 2003 - 19:30:56 CDT)
- Re: need urgent help (Fri Aug 29 2003 - 23:04:00 CDT)
- Re: python question 2 (Mon Aug 25 2003 - 10:09:54 CDT)
- Re: python question (Sat Aug 23 2003 - 21:34:10 CDT)
- Re: python: cannot find library (Thu Aug 07 2003 - 09:40:55 CDT)
- Re: trajectory animation usign PBC (Wed Aug 06 2003 - 18:04:39 CDT)
- Re: python: cannot find library (Wed Aug 06 2003 - 11:18:20 CDT)
- Re: python: cannot find library (Wed Aug 06 2003 - 11:16:12 CDT)
- Re: Periodic images (Tue Jul 29 2003 - 11:38:15 CDT)
- Re: Reg: No. of Frames (Mon Jul 28 2003 - 13:40:12 CDT)
- Re: Re: maillist (Sun Jul 27 2003 - 23:58:21 CDT)
- Re: Some improvements for 1.8.2 (Sat Jul 26 2003 - 16:08:56 CDT)
- Re: Re: question on resname (Tue Jul 22 2003 - 21:13:50 CDT)
- Re: fitting (Thu Jul 10 2003 - 09:20:41 CDT)
- Re: Colouring (Wed Jun 18 2003 - 09:22:42 CDT)
- Re: Dihedral angle calculation! (Wed Jun 04 2003 - 12:29:43 CDT)
- Re: Dihedral angle calculation! (Wed Jun 04 2003 - 12:08:32 CDT)
- Re: Molecular dynamics order parameters (Tue May 20 2003 - 13:03:29 CDT)
- Re: Memory problems using the "move" command inside a loop! (Wed Apr 30 2003 - 17:56:32 CDT)
- Re: unit cell information (Mon Apr 28 2003 - 12:07:46 CDT)
- Re: Unit cell information in python and IMD interface code (Mon Mar 31 2003 - 12:12:22 CST)
- Re: Unit cell information in python and IMD interface code (Fri Mar 28 2003 - 12:03:31 CST)
- Re: drawing bonds (Tue Mar 25 2003 - 09:40:19 CST)
- Re: Memory problems with TCL scripts in VMD. (Fri Mar 21 2003 - 17:53:51 CST)
- Re: Color code (Thu Mar 20 2003 - 10:29:29 CST)
- Re: atomselect (Tue Mar 18 2003 - 16:52:12 CST)
- Re: atomselect (Tue Mar 18 2003 - 16:19:36 CST)
- Re: multiple cells representation (Mon Feb 24 2003 - 20:31:07 CST)
- Re: Quick question about 3-letter codes for positive residues (Wed Feb 19 2003 - 09:16:52 CST)
- Re: New user questions (Thu Feb 13 2003 - 12:29:00 CST)
- Re: remote_ctl.tcl: VMD's stdout -> socket ? (Wed Feb 12 2003 - 16:46:36 CST)
- Re: remote_ctl.tcl: VMD's stdout -> socket ? (Wed Feb 12 2003 - 16:43:19 CST)
- Re: Python callbacks (Mon Feb 10 2003 - 10:47:37 CST)
- Re: Compiling VMD-1.8 as a loadable python module (Thu Feb 06 2003 - 10:55:14 CST)
- Re: python: packages not found (Tue Feb 04 2003 - 10:50:35 CST)
- Re: [OT] pdb files with lots of residues (Thu Jan 30 2003 - 09:45:07 CST)
- Re: initial run by vmd on loading a trajectory (Wed Jan 29 2003 - 09:07:29 CST)
- Re: Cl ions (Thu Jan 16 2003 - 23:26:37 CST)
- Re: SHAKE/namd (Thu Jan 16 2003 - 23:23:33 CST)
- Re: VMD Representation (addition) (Sun Dec 29 2002 - 19:22:03 CST)
- Re: creating spherical water droplet (Fri Dec 27 2002 - 09:46:09 CST)
- Re: water model (Wed Dec 18 2002 - 21:59:12 CST)
- Re: smoothing from the command line (Sun Dec 15 2002 - 23:20:12 CST)
- Re: pdb format (Sun Dec 15 2002 - 23:07:05 CST)
- Re: interatomic distances (Mon Dec 09 2002 - 14:33:43 CST)
- Re: Fitting simple geometric objects to a molecule ? (Mon Dec 02 2002 - 09:19:55 CST)
- Re: hbonds during trajectorywith vmd 1.8beta (Mon Dec 02 2002 - 09:15:20 CST)
- Re: helices in coil (Wed Oct 30 2002 - 10:57:34 CST)
- Re: hydrogen bonding (Wed Oct 30 2002 - 10:54:13 CST)
- Re: Feature request for vmd 1.8 (Mon Oct 28 2002 - 09:53:56 CST)
- Re: Hydrophobicity (Sun Oct 06 2002 - 13:37:35 CDT)
- Re: VMD 1.8a28 bundle for MacOS X 10.2 available... (Fri Sep 27 2002 - 19:35:05 CDT)
- Re: Yes Another HPUX problem (Thu Sep 19 2002 - 10:37:08 CDT)
- Re: Drawing atom - atom bonds (Mon Sep 16 2002 - 09:44:49 CDT)
- Re: Getting history and file completion to work in vmd console ? (Fri Aug 30 2002 - 08:37:04 CDT)
- Re: Secondary structure (Fri Aug 23 2002 - 09:49:03 CDT)
- Re: Separate graphical objects? (Sat Aug 17 2002 - 12:01:07 CDT)
- Re: movie maker plugin doesn't load (Fri Aug 16 2002 - 11:07:18 CDT)
- Re: the same problem (Fri Aug 16 2002 - 08:56:28 CDT)
- Re: Separate graphical objects? (Thu Aug 15 2002 - 16:05:55 CDT)
- Re: selection question (Thu Aug 15 2002 - 08:51:05 CDT)
- Re: Question about dihedral angles in VMD. (Wed Aug 07 2002 - 15:29:38 CDT)
- Re: Adding labels, etc. (Sun Jul 14 2002 - 12:25:20 CDT)
- Re: residue rotation within single pdb file (Sun Jul 07 2002 - 11:21:13 CDT)
- Re: animation from files with different numbers of atoms (Sat Jun 22 2002 - 17:07:56 CDT)
- Re: TK script problem (Fri Jun 07 2002 - 09:32:02 CDT)
- Re: fiiting (Mon May 27 2002 - 12:25:44 CDT)
- Re: fiiting (Mon May 27 2002 - 10:24:14 CDT)
- Re: Write DCD (Tue May 14 2002 - 10:03:16 CDT)
- Re: pdb naming convention (Wed Apr 17 2002 - 10:26:39 CDT)
- Re: Linking with FLTK 1.1.0b12 (Tue Apr 09 2002 - 16:43:48 CDT)
- Re: Animation (Tue Apr 09 2002 - 14:36:36 CDT)
- Re: strange bond (Wed Apr 03 2002 - 10:46:09 CST)
- Re: python create graphics molecule (Tue Mar 26 2002 - 10:15:03 CST)
- Re: another trivial question regarding the key setting. (Mon Mar 25 2002 - 10:26:37 CST)
- Re: drawing bonds with vmd/python interface (Fri Mar 22 2002 - 11:55:45 CST)
- Re: create new colors (Fri Mar 08 2002 - 11:39:58 CST)
- Re: Access to Python libraries from Mandrake8.1 (Sun Mar 03 2002 - 03:16:34 CST)
- Re: Removing perspective projection at startup (Thu Feb 28 2002 - 11:19:35 CST)
- Re: AtomSel and Graphics (Sat Feb 23 2002 - 16:53:21 CST)
- Re: python script of atomsel expression (Tue Feb 19 2002 - 10:47:58 CST)
- Re: Python: radius always 1 for cylinder and cones (Wed Feb 06 2002 - 17:03:55 CST)
- Re: python disabled (Wed Jan 30 2002 - 14:51:03 CST)
- Re: bond length (Mon Jan 28 2002 - 11:32:36 CST)
- Re: up arrow for previous commands (with the command attached) (Sat Jan 19 2002 - 01:46:17 CST)
- Re: 2 questions (Wed Jan 09 2002 - 11:23:07 CST)
- OpenGL cards for workstations (Fri Jan 04 2002 - 17:05:36 CST)
- Re: rotating two superposed molecules (Sun Dec 16 2001 - 16:36:58 CST)
- Re: compiling problems (Mon Nov 26 2001 - 13:24:55 CST)
- Waiting for files to load in VMD (Fri Nov 09 2001 - 11:14:28 CST)
- Re: more animating trajectories (Thu Nov 08 2001 - 10:59:52 CST)
- Re: Making UIobjects (Thu Oct 25 2001 - 11:46:02 CDT)
- Re: memory problems (Sat Aug 25 2001 - 21:51:25 CDT)
- Re: problem with RMSD script (Sun Aug 19 2001 - 18:48:02 CDT)
- Re: 3 simple questions from a newbie (Mon Jul 23 2001 - 12:34:16 CDT)
- Re: Coloring Sections of Peptides (Wed May 16 2001 - 15:58:26 CDT)
- Re: 1.6.1 hotkey problem (Wed May 02 2001 - 15:18:40 CDT)
- Re: Sorry! Forgot to include the name of the molecule (Sun Apr 22 2001 - 15:44:57 CDT)
- Re: animation and reps (Wed Apr 04 2001 - 14:15:19 CDT)
- Re: python vmd interface (Thu Mar 29 2001 - 11:53:11 CST)
- Re: group selection (Fri Mar 23 2001 - 09:38:46 CST)
- Re: group selection (Thu Mar 22 2001 - 12:32:23 CST)
- Re: python loop (Fri Mar 16 2001 - 12:23:18 CST)
- Re: Molecule rotation (Thu Mar 08 2001 - 12:32:15 CST)
- Re: caculate the RMSD of 10 DNA (Wed Mar 07 2001 - 23:16:30 CST)
- Re: vmd, linux & dri (fwd) (Fri Jan 12 2001 - 20:57:12 CST)
- VMD Python binaries available for testing (Fri Dec 08 2000 - 14:08:55 CST)
- Re: Ca-dist script (Fri Oct 13 2000 - 13:29:23 CDT)
- Re: problem compiling on redhat 7.0 (Sat Oct 07 2000 - 11:03:30 CDT)
- Re: Using VMD to edit dynamics output (Mon Oct 02 2000 - 00:22:25 CDT)
- Re: removing unwanted residues (Thu Aug 31 2000 - 12:03:21 CDT)
- Re: hbond calculations (Tue Aug 29 2000 - 14:18:45 CDT)
- Re: incorrect tube, trace and ribbon drawings (Mon Aug 21 2000 - 13:32:52 CDT)
- Re: Bond information (Fri Aug 04 2000 - 12:11:21 CDT)
- Re: PDB file output (Tue Jul 25 2000 - 12:22:38 CDT)
- VMD runs on the T3E! (Sat Jun 24 2000 - 22:37:13 CDT)
- Re: Pretty Picture (Fri Jun 23 2000 - 12:18:47 CDT)
- Re: vmd/namd connection in linux (Thu Jun 15 2000 - 17:05:51 CDT)
- Re: GRASP files (Wed Jun 14 2000 - 14:37:01 CDT)
- Re: File patterns (Tue May 30 2000 - 14:00:15 CDT)
- Re: graphing a dihedral (Sun May 14 2000 - 17:07:30 CDT)
- Mouse behavior in VMD (Mon Apr 24 2000 - 10:16:12 CDT)
- Re: Setting colors (Fri Feb 18 2000 - 10:25:50 CST)
Justin JEONG
- where is the "move" procedure in the toturial (Sun Jan 27 2008 - 16:32:03 CST)
Justyna Jaroniec
- xyz file format (Wed Jun 09 2004 - 13:54:17 CDT)
juzer stationwala
- question regarding H-bond calculation (Sun May 01 2011 - 10:31:55 CDT)
jwc_at_itsa.ucsf.edu
- Re: Stereo VMD (Thu Dec 26 2002 - 11:32:16 CST)
- Stereo VMD (Tue Dec 24 2002 - 18:24:51 CST)
Jyh-Shyong Ho
- Joystick on Linux (Mon Mar 07 2005 - 23:26:25 CST)
jz7_at_duke.edu
- question about script for drawing dipole moment for helix (Tue Jan 03 2006 - 17:39:32 CST)
Jérôme Hénin
- Suggestion for measure cluster (Fri May 11 2012 - 04:32:39 CDT)
- Re: Suggestion for measure cluster (Fri May 11 2012 - 04:35:07 CDT)
- Save/restore display parameters (Fri May 04 2012 - 09:51:28 CDT)
- Re: Implicit Ligand Sampling-molecule rotation issue (Mon Jan 09 2012 - 05:11:19 CST)
- Re: bash scripts quits after few frames (Tue Nov 22 2011 - 06:32:43 CST)
- Re: Solvating hexagonal unit cell (Thu Oct 06 2011 - 06:15:48 CDT)
- Re: Count waters inside a specified box (Wed Sep 07 2011 - 06:18:06 CDT)
- Re: Re: namd-l: how to generate transparent figures? (Mon Jul 25 2011 - 07:19:40 CDT)
- Re: Salt brigde (Thu Jul 07 2011 - 15:32:27 CDT)
- Re: color trajectory using specific values rather than color scale (Mon Jun 27 2011 - 11:20:41 CDT)
- Re: Tracing distances among atoms in a MD simulation (Thu Jun 09 2011 - 02:25:23 CDT)
- Re: measure fit - wrong alignment (Thu May 26 2011 - 07:43:12 CDT)
- Re: Error starting second VMD (Mon Mar 28 2011 - 17:33:59 CDT)
- Re: Error starting second VMD (Fri Mar 25 2011 - 09:19:59 CDT)
- Re: Error starting second VMD (Fri Mar 25 2011 - 04:40:04 CDT)
- Error starting second VMD (Wed Mar 23 2011 - 09:40:20 CDT)
- Re: showing fixed number of frames as the animation (Sat Feb 26 2011 - 07:43:45 CST)
- Re: showing fixed number of frames as the animation (Sat Feb 26 2011 - 08:01:58 CST)
- Re: package psfgen: Failed to set coordinates for C3 (Fri Feb 25 2011 - 08:55:47 CST)
- Re: RMSF measurement (Thu Feb 24 2011 - 05:47:36 CST)
- Re: Re: VMD 1.9 beta 1 posted for download... (Wed Feb 23 2011 - 03:47:20 CST)
- Re: atoms selection (Mon Feb 21 2011 - 08:18:04 CST)
- Re: Dynamically updating water colors for each frame of a trajectory (Thu Feb 17 2011 - 04:10:04 CST)
- Re: Multiseq in text mode (Tue Feb 08 2011 - 03:43:39 CST)
- Re: water molecule count (Tue Feb 01 2011 - 11:19:15 CST)
- Re: water molecule count (Tue Feb 01 2011 - 10:12:47 CST)
- Re: a problem about multiplot (Thu Jan 27 2011 - 04:04:55 CST)
- Re: Truncated octahedron Box (Wed Jan 12 2011 - 10:59:34 CST)
- Re: rgyr calculation problem (Fri Nov 19 2010 - 15:08:10 CST)
- Re: tcl script problem using -dispdev text .. (Thu Nov 18 2010 - 08:07:24 CST)
- Re: dynamic atom selection (Tue Nov 09 2010 - 08:28:49 CST)
- Re: IED 2.02 and VMD 1.8.7 (Wed Nov 03 2010 - 05:44:06 CDT)
- Re: Asymmetric water molecule (Wed Nov 03 2010 - 05:03:40 CDT)
- Re: VMD text mode/unwrap (Mon Nov 01 2010 - 05:12:59 CDT)
- Re: vmd: Tcl script help (Sat Oct 30 2010 - 12:47:22 CDT)
- Re: IED 2.02 and VMD 1.8.7 (Wed Oct 13 2010 - 16:33:02 CDT)
- Re: about psfgen patch (Thu Sep 23 2010 - 11:58:38 CDT)
- Re: write pdbs of selected frames of a trajectory (Thu Sep 23 2010 - 03:55:43 CDT)
- Re: Faster secondary structure assignment (Tue Aug 31 2010 - 10:38:49 CDT)
- Faster secondary structure assignment (Mon Aug 30 2010 - 11:28:45 CDT)
- Re: Tcl-wrapped "lightweight plugin" in C++ (Thu Jun 03 2010 - 07:56:51 CDT)
- Re: Tcl-wrapped "lightweight plugin" in C++ (Sun May 30 2010 - 04:26:07 CDT)
- Tcl-wrapped "lightweight plugin" in C++ (Thu May 27 2010 - 07:27:00 CDT)
- Re: what is wrong with this script? (Wed Mar 22 2006 - 01:31:13 CST)
- Re: Convert an ascii matrix to an image (Mon Mar 13 2006 - 15:22:11 CST)
- Re: user field memory demand (Mon Mar 13 2006 - 11:02:36 CST)
- Re: Convert an ascii matrix to an image (Mon Mar 13 2006 - 07:33:11 CST)
- Re: Tachyon and text rendering (Thu Feb 23 2006 - 17:04:47 CST)
- Re: printing to a file from a procedure to get RMSD (Tue Jan 31 2006 - 12:57:09 CST)
- animate error handling (Fri Dec 09 2005 - 05:04:52 CST)
- Re: PBC and H-bond detection (Fri Dec 09 2005 - 02:23:36 CST)
- Re: PBC and H-bond detection (Thu Dec 08 2005 - 14:21:17 CST)
- PBC and H-bond detection (Thu Dec 08 2005 - 09:03:57 CST)
- Re: counting selected atoms---selection time series (Thu Sep 01 2005 - 02:05:32 CDT)
- Re: TCL for adding bonds? (Fri Jul 08 2005 - 02:58:31 CDT)
- Re: Intersurf plugin (Wed Mar 09 2005 - 08:21:45 CST)
- Re: Display only side chains (Mon Mar 07 2005 - 18:59:42 CST)
- Re: Intersurf plugin (Mon Mar 07 2005 - 12:02:11 CST)
- Re: RNA polymerase docking on DNA (Thu Feb 24 2005 - 02:04:50 CST)
- Volumeslice in arbitrary plane (Tue Feb 22 2005 - 10:13:28 CST)
- Re: Call to Stride program failed (Fri Feb 18 2005 - 10:05:37 CST)
- Call to Stride program failed (Fri Feb 18 2005 - 09:42:27 CST)
- Re: smoothed trajectory (Thu Feb 17 2005 - 13:59:19 CST)
- Re: Tachyon does not render surfaces colored by EP (Wed Feb 16 2005 - 09:53:02 CST)
- Re: problem Nvidia and vmd (Mon Dec 06 2004 - 15:49:35 CST)
- Re: namd-l: Writing pdb file.. easier way? (Thu Nov 18 2004 - 17:28:36 CST)
- Re: Where should I put script file? (Fri Nov 12 2004 - 17:10:07 CST)
- Re: "measure fit" inaccuracy? (Fri Jun 11 2004 - 09:34:45 CDT)
- "measure fit" inaccuracy? (Fri Jun 11 2004 - 02:48:49 CDT)
- Re: TCL string operation (Sat Apr 03 2004 - 10:10:56 CST)
- Re: configure do nothing in Linux(???) (Wed Mar 31 2004 - 11:20:51 CST)
- Re: Sine Cosine (Sun Mar 14 2004 - 04:32:26 CST)
- Re: Non-serious query (Wed Mar 03 2004 - 12:03:13 CST)
- Re: graphics card (Sun Nov 30 2003 - 11:18:29 CST)
- Re: Background colour (Sun Nov 30 2003 - 03:39:16 CST)
- secondary structure update (Fri Oct 31 2003 - 07:37:31 CST)
- Re: Radeon FireGL drivers crash VMD (Fri Oct 31 2003 - 04:38:39 CST)
- Re: getting ramachandran plots with VMD (Mon Oct 27 2003 - 15:47:06 CST)
- Re: vmd 1.8 Linux mesa on RedHat (Tue Oct 14 2003 - 17:23:03 CDT)
- Re: NVIDIA Quadro - CrystalEyes - Linux (Tue Sep 30 2003 - 09:39:35 CDT)
- Re: NVIDIA Quadro - CrystalEyes - Linux (Tue Sep 30 2003 - 09:13:20 CDT)
- NVIDIA Quadro - CrystalEyes - Linux (Tue Sep 30 2003 - 08:20:52 CDT)
- Systematic VMD crash above critical size (Mon Sep 15 2003 - 09:04:01 CDT)
Kaihsu Tai
- large output XYZ file > 2 Gio? (Re: [biosimgrid-team] Re: DCD to XYZ conversion) (Thu Oct 06 2005 - 05:43:14 CDT)
Kailee
- Re: script for atom collisions (Fri Jun 15 2007 - 12:21:13 CDT)
- Re: script for atom collisions (Tue Jun 12 2007 - 08:58:36 CDT)
- script for atom collisions (Mon Jun 11 2007 - 12:10:30 CDT)
- Re: help on trajectory density map (Tue May 29 2007 - 07:43:46 CDT)
- help on trajectory density map (Sun May 27 2007 - 12:54:12 CDT)
- help on writing a tcl script (Fri May 18 2007 - 10:57:58 CDT)
- question about making movies (Wed May 16 2007 - 11:49:50 CDT)
- Re: How to superimpose trajectories (Thu Mar 22 2007 - 10:04:44 CDT)
- How to superimpose trajectories (Wed Mar 21 2007 - 09:14:33 CDT)
Kalavera_at_gmx.net
- Re: Problem with autoionize ? (Thu Apr 02 2009 - 09:58:53 CDT)
- Problem with autoionize ? (Thu Apr 02 2009 - 08:50:49 CDT)
kalyan chaitanya
- Re: query regarding membrane building (Sat Sep 29 2007 - 22:58:45 CDT)
- query regarding membrane building (Sat Sep 29 2007 - 09:41:14 CDT)
Kamil Tamiola
- Problem with Dell Workstation (Tue Nov 15 2005 - 13:42:00 CST)
kamilt_at_ibmb.uni.wroc.pl
- Problems with Terminal and 1.8.4.a22 under OSX (Tiger 10.4.3) (Sun Nov 06 2005 - 16:08:34 CST)
Kamp, Marc vander
- RE: incompatibility between VMD & NAMD for reading Amber crd files (Tue Jun 22 2004 - 04:20:16 CDT)
- incompatibility between VMD & NAMD for reading Amber crd files (Mon Jun 21 2004 - 07:33:11 CDT)
kanchi subbarao rao
- Re: Hydrophobic mismatch script (Mon Apr 23 2012 - 06:11:24 CDT)
- hi (Fri Jul 15 2011 - 04:43:19 CDT)
- hi to all (Tue May 17 2011 - 11:34:04 CDT)
- hello (Fri Apr 29 2011 - 05:58:05 CDT)
- hello (Thu Apr 28 2011 - 01:38:36 CDT)
Kapil Amarnath
- Re: Orienting a Protein (Sun Aug 14 2011 - 13:30:09 CDT)
- Orienting a Protein (Fri Aug 12 2011 - 11:19:31 CDT)
Kara Di Giorgio
- Re: Question about overlaying structures (Tue Mar 27 2007 - 12:30:06 CDT)
- Question about overlaying structures (Thu Mar 15 2007 - 21:16:26 CDT)
- Question about RMSD calculator (Tue Dec 12 2006 - 13:16:32 CST)
- Method to measure DNA perterbation (Tue Nov 15 2005 - 19:43:35 CST)
- How do I share trajectory visualizations with other systems? (Mon Nov 14 2005 - 21:15:19 CST)
- Generating an average structure from a trajectory (Fri Sep 16 2005 - 13:01:34 CDT)
- Re: Using VMD to overlay structures (Mon Aug 22 2005 - 14:11:22 CDT)
- Using VMD to overlay structures (Fri Aug 19 2005 - 16:26:32 CDT)
karan uppal
- coloring selected chains and residues (Mon Jul 30 2007 - 18:58:05 CDT)
- can't add packages (Sat Jul 28 2007 - 12:59:37 CDT)
- python and C++ extensions (Thu Jul 26 2007 - 11:19:06 CDT)
Karel Berka
- Re: Re: VMD and 3D visualization problems with Nvidia Quadro 4000 (Wed Jan 11 2012 - 10:43:13 CST)
- Re: VMD and 3D visualization problems with Nvidia Quadro 4000 (Sat Dec 10 2011 - 15:29:36 CST)
Kari Maher
- One Year written repl1ca w4tches warranty (Tue Apr 24 2007 - 15:10:17 CDT)
Karne, Sai Harish Babu
- Re: RMSD-gaps (Mon Apr 20 2009 - 21:04:53 CDT)
- RMSD-gaps (Mon Apr 20 2009 - 17:09:51 CDT)
- Multiseq error (Wed Apr 15 2009 - 13:48:18 CDT)
Karol Kaszuba
- Re: select atoms between molecules (Wed Jan 02 2008 - 15:47:34 CST)
- Re: select atoms between molecules (Wed Jan 02 2008 - 13:10:04 CST)
- QM_plugin_force_constants (Mon Dec 03 2007 - 06:41:24 CST)
- gaussinan_log_file_error_can't use empty string as operand of "/" (Tue Nov 27 2007 - 03:28:04 CST)
- PSF_and_PDB_file_of_LIGAND (Fri Jun 01 2007 - 05:29:53 CDT)
- ligand parametrization (Mon May 28 2007 - 10:57:05 CDT)
Karsten SUHRE
- Re: Stride (Tue Dec 19 2006 - 02:05:13 CST)
- Re: Making a Movie (Tue Jun 20 2006 - 12:46:06 CDT)
- Re: Video Card (Wed Nov 30 2005 - 02:02:33 CST)
- Re: How to build a crystal structure from a pdb file ? (Thu Sep 22 2005 - 02:07:16 CDT)
- Re: VMD crash on athlon64 with licorice representation (Thu May 12 2005 - 12:07:29 CDT)
- Re: Choice of a Linux machine for VMD and high-end computing (Fri Apr 08 2005 - 07:34:04 CDT)
- Choice of a Linux machine for VMD and high-end computing (Wed Apr 06 2005 - 11:09:58 CDT)
- Re: movie showing loop movement (Thu Jul 29 2004 - 01:43:24 CDT)
- autostereograms in VMD? (Fri Jul 02 2004 - 02:42:11 CDT)
- Re: Making movies (Wed Jun 23 2004 - 03:07:31 CDT)
- display of electron density maps (Thu Jun 03 2004 - 07:53:20 CDT)
- Re: Missing bonds (Thu May 06 2004 - 01:44:52 CDT)
- Re: experience using VMD with 3-D printers? (Tue Feb 10 2004 - 06:50:59 CST)
- experience using VMD with 3-D printers? (Mon Feb 09 2004 - 08:30:25 CST)
- saving bond-length information (Thu Sep 11 2003 - 04:51:47 CDT)
- problems with stereo display on NVIDIA Quadro4 750 XGL (Tue Jan 14 2003 - 02:12:49 CST)
- stereo display on NVIDIA Quadro4 750 XGL (Tue Jan 07 2003 - 05:32:22 CST)
Kartheek
- Re: Radial distribution function (Sat Sep 03 2011 - 12:49:00 CDT)
- Radial distribution function (Sat Sep 03 2011 - 10:10:03 CDT)
- Radial distribution function (Sat Sep 03 2011 - 07:18:46 CDT)
- Radial distribution function (Sat Sep 03 2011 - 06:32:58 CDT)
- Radial distribution function (Sat Sep 03 2011 - 05:33:50 CDT)
- Hydration dynamics:Phrase selection problem in vmd (Mon Jul 18 2011 - 07:09:02 CDT)
karthigeyan karthigeyantp
- Re PSF file generation (Mon Jul 20 2009 - 07:34:51 CDT)
- how to find the sign of the dihedral angle (full message). (Sat Mar 14 2009 - 00:23:47 CDT)
- tcl fscript or Removeing protein flucutation (Wed Nov 26 2008 - 05:45:33 CST)
Karunesh Arora
- (no subject) (Thu Jul 29 2004 - 10:09:40 CDT)
- draw multiple frames (Fri Nov 28 2003 - 21:30:03 CST)
- vmd script library (Wed Sep 24 2003 - 14:08:35 CDT)
- drawing objects (Sat Aug 30 2003 - 08:37:22 CDT)
Kassem Ghaddar
- New Cartoon representation problem (Tue Jan 05 2010 - 04:09:16 CST)
Kateryna Miroshnychenko
- Re: How to save the snapshot of my protein? (Fri Feb 09 2007 - 09:21:23 CST)
- Re: IndexError in ied (Tue Jul 12 2005 - 08:22:39 CDT)
- Re: IndexError in ied (Thu Jul 07 2005 - 02:23:06 CDT)
- IndexError in ied (Wed Jul 06 2005 - 11:27:11 CDT)
Katherine Parra
- write pdbs of selected frames of a trajectory (Wed Sep 22 2010 - 14:05:58 CDT)
- Mean atom position (Mon Mar 08 2010 - 13:04:47 CST)
- RBCG Model (Tue Oct 27 2009 - 09:19:55 CDT)
- catdcd (Mon Oct 12 2009 - 09:59:23 CDT)
- H_Bonds (Mon Sep 28 2009 - 12:53:21 CDT)
- water molecules around proteins (Fri Sep 18 2009 - 12:04:04 CDT)
- ligand names (Fri Apr 03 2009 - 10:35:54 CDT)
- Re: Test (Tue Feb 24 2009 - 10:01:41 CST)
- trajectory path script (Thu Feb 05 2009 - 11:00:12 CST)
- Projection of a vector on to another. (Fri Sep 19 2008 - 13:56:01 CDT)
- vecsub command (Tue Jul 22 2008 - 11:03:42 CDT)
- Re: Error message in VMD console when I try to switch to Python mode. (Tue Jul 22 2008 - 11:07:56 CDT)
- Re: Error message in VMD console when I try to switch to Python mode. (Thu Jul 17 2008 - 09:30:22 CDT)
- Re: Error message in VMD console when I try to switch to Python mode. (Thu Jul 17 2008 - 09:13:14 CDT)
- Re: Error message in VMD console when I try to switch to Python mode. (Wed Jul 16 2008 - 14:06:06 CDT)
- Error message in VMD console when I try to switch to Python mode. (Wed Jul 16 2008 - 13:16:28 CDT)
- trajectory to xyz file. (Mon Jul 07 2008 - 13:16:30 CDT)
- Solvation (Fri Jun 06 2008 - 08:56:31 CDT)
- Solvation of a molecule (Thu Jun 05 2008 - 08:15:41 CDT)
- psf file (Tue Jun 03 2008 - 11:47:43 CDT)
Kathleen Barron
- deposition simulation from lammps (Thu Jul 26 2007 - 11:04:33 CDT)
Katya Lyakhova
- Unable to run VMD in graphical mode/ ubuntu 8.10 / Open GL problem (Wed Jan 28 2009 - 09:19:35 CST)
Kaur, Tarandeep
- Query (Tue Jul 29 2008 - 07:55:49 CDT)
kaushik lakkaraju
- vmd draw command for text (Sun Jan 30 2011 - 12:32:01 CST)
kaustubh joshi
- problem in launching vmd (Tue Jun 21 2011 - 07:21:17 CDT)
Kei Sit
- RE: saving dcd file different if by script or by interactive mode (Tue Apr 10 2012 - 19:24:56 CDT)
- RE: Gromacs analysis tools for Namd output (Wed Feb 01 2012 - 17:33:01 CST)
- RE: redirecting to output (Thu Sep 22 2011 - 00:32:53 CDT)
- (no subject) (Thu Oct 07 2010 - 21:03:31 CDT)
Keith Battle
- antechamber for Windows (Fri May 20 2011 - 12:48:21 CDT)
- Re: Selecting by X-coordinate (Tue Oct 12 2010 - 18:00:35 CDT)
- Selecting by X-coordinate (Tue Oct 12 2010 - 17:31:02 CDT)
Keith Oxenrider
- Nothing happens with Window's install (Tue Feb 05 2002 - 11:25:23 CST)
- Main window off top of screen (Fri Feb 01 2002 - 10:57:58 CST)
Keith Refson
- 1.3b2 (Wed Mar 03 1999 - 11:51:13 CST)
- VMDTECH: CONECTing atoms (Mon Aug 24 1998 - 09:28:47 CDT)
- VMD only read 58 frames from XYZ file (Wed Nov 05 1997 - 13:56:40 CST)
- VMD only read 58 frames from XYZ file (Wed Nov 05 1997 - 06:42:17 CST)
- Re: GRD file format (Tue Mar 22 2005 - 12:30:46 CST)
- GRD file format (Tue Mar 22 2005 - 09:57:02 CST)
- Periodic display problem (Tue Aug 24 2004 - 05:34:31 CDT)
- Re: Matching electron density map and PDB (Tue Dec 02 2003 - 03:43:41 CST)
- Matching electron density map and PDB (Sat Nov 22 2003 - 11:16:30 CST)
- Re: POV failure 2nd try (Fri May 26 2000 - 13:09:04 CDT)
- POV render fails 2nd time (Fri May 26 2000 - 13:00:39 CDT)
- More than 99999 atoms? (Fri May 26 2000 - 06:24:38 CDT)
Kelly Leung
- AutoPSF deleting residues (Tue Jun 15 2010 - 10:35:38 CDT)
Kelvin Chu
- MacOSX VMD errors. (Wed Jun 18 2003 - 10:37:55 CDT)
Kelvin Luther
- dots per inch? (Wed Oct 19 2005 - 14:01:18 CDT)
Kemikal Kid Kolby
- membrane modeling (Sat Mar 25 2000 - 18:17:52 CST)
Ken Sale
- Vmd -dispdev text under OS X (Mon Aug 04 2003 - 20:04:25 CDT)
- Vmd console window colors in Irix 6.5 (Thu Oct 24 2002 - 13:47:03 CDT)
Kendra Baker
- Need help sleeping? Read this! (Thu Aug 16 2007 - 20:39:47 CDT)
Kenley Barrett
- Re: "cartoon" failing to show secondary structure--more info (Fri Dec 15 2006 - 12:39:54 CST)
- Re: "cartoon" failing to show secondary structure (Fri Dec 15 2006 - 11:27:30 CST)
- "cartoon" failing to show secondary structure (Thu Dec 14 2006 - 18:31:09 CST)
- VMD 1.8.4 support for AMBER binary trajectory files (Tue Oct 31 2006 - 17:47:05 CST)
- Re: VMD won't make mpg out of my trajectory (Wed Sep 20 2006 - 14:48:59 CDT)
- VMD won't make mpg out of my trajectory (Wed Sep 20 2006 - 13:38:19 CDT)
- scrolling up in vmd console (Sun May 21 2006 - 13:37:04 CDT)
- truncated octahedron from AMBER (Tue Apr 25 2006 - 13:05:06 CDT)
- distances (Tue Apr 11 2006 - 11:19:41 CDT)
Kenneth Ayers
- Phantom on Sgi? (Wed Aug 14 2002 - 08:41:13 CDT)
Kenneth Smith
- Updated Bonding Connectivity each frame (Tue Jul 13 2004 - 08:27:07 CDT)
Kenton Webster
- Delightful repl1ca w4tches at Prest1ge Repl1cas (Tue Aug 28 2007 - 09:33:17 CDT)
Kevin DeMarco
- Re: vmd MacOSX using dispdev (Fri Jul 18 2008 - 13:33:09 CDT)
- Re: Mac OSX crash with bus error/segmentation fault upon loading pdb/dcd (Mon Jun 30 2008 - 18:50:24 CDT)
- Re: Long file paths in Mac OS 10.5.3 (Wed Jun 04 2008 - 18:30:19 CDT)
- Re: Long file paths in Mac OS 10.5.3 (Wed Jun 04 2008 - 16:43:32 CDT)
- Long file paths in Mac OS 10.5.3 (Wed Jun 04 2008 - 15:24:51 CDT)
Kevin Knoops
- size for render (Tue May 24 2011 - 06:01:15 CDT)
Kevin Sanbonmatsu
- rmsd crashes vmd (Thu Nov 04 1999 - 21:02:26 CST)
Kevin Smith
- Re: Export problem Licorice to STL (Mon Oct 03 2005 - 13:16:07 CDT)
- Export problem Licorice to STL (Mon Oct 03 2005 - 10:50:53 CDT)
- PDB to STL help needed (Wed Aug 03 2005 - 09:23:02 CDT)
Kevin Wu
- Multimodel PDB files with Different Models? (Wed Jun 24 2009 - 21:05:30 CDT)
Kevin Y. Sanbonmatsu
- $64k/yr hpc post-doc@lanl (Sun Feb 12 2006 - 19:05:34 CST)
- test - 0123456789abcdefghijklnmopqrstuvwxyz (Sun Feb 12 2006 - 16:17:28 CST)
Kevser Göçmen Topal
- atomselection (Wed Jun 20 2007 - 02:27:50 CDT)
Khaled Barakat
- Re: SASA and SESA (Sun Jan 24 2010 - 15:31:59 CST)
- SASA and SESA (Sun Jan 24 2010 - 14:44:45 CST)
- SASA and SESA (Fri Jan 22 2010 - 20:22:25 CST)
- Size of a protein (Wed Apr 29 2009 - 16:06:31 CDT)
- How to calculate the volume of a molecule using vmd? (Thu May 15 2008 - 22:17:36 CDT)
Kim Branson
- Re: VMD 1.6a4 core dumps. (Thu Nov 23 2000 - 21:45:20 CST)
- VMD 1.6a4 core dumps. (Thu Nov 23 2000 - 19:35:00 CST)
- nvidia woes. (Mon Sep 11 2000 - 21:10:28 CDT)
- Re: Announce: VMD 1.6a1 is available (Sun Aug 27 2000 - 23:13:24 CDT)
- vmd on redhat6.2 and elsa gladiac (Tue Aug 15 2000 - 21:32:06 CDT)
Kim Foster
- vmd/namd connection in linux (Thu Jun 15 2000 - 15:58:08 CDT)
Kim Gunnerson
- Units for Measure Dipole (Fri Feb 02 2007 - 16:51:16 CST)
- Re: breaking a big dcd file (Wed Jan 11 2006 - 13:41:49 CST)
Kim Taylor
- Trying to get Crystal Eyes to work on VMD with Twin View confirguation...Fixed myself (Wed Sep 07 2005 - 19:57:15 CDT)
- Trying to get Crystal Eyes to work on VMD with Twin View confirguation (Wed Sep 07 2005 - 19:35:24 CDT)
Kim Vilbour Andersen
- Re: Stereo on SGI Octane 250HMz R10000, IRIX 6.5 (Mon Feb 15 1999 - 05:21:17 CST)
- Stereo on SGI Octane 250HMz R10000, IRIX 6.5 (Fri Feb 12 1999 - 09:20:16 CST)
Kim, Kwiseon
- Stereo VMD on Mac G5 (Mon May 22 2006 - 12:05:23 CDT)
- RE: Stereo on MacG5 (single processor) for VMD, Chimera UCSF etc. (Wed Mar 29 2006 - 15:47:24 CST)
- Re: Classroom Stereo projection (Wed Oct 19 2005 - 12:30:12 CDT)
- Re: Classroom Stereo projection (Wed Oct 19 2005 - 11:03:19 CDT)
- RE: is VMD compatible with NVIDIA 3D stereo drivers ? (Fri Mar 12 2004 - 11:01:29 CST)
- RE: is VMD compatible with NVIDIA 3D stereo drivers ? (Fri Mar 12 2004 - 09:50:07 CST)
- RE: removing residues/fragments from the system (Sun Feb 15 2004 - 09:09:07 CST)
- RE: removing surrounding water molecules (Fri Feb 13 2004 - 16:51:33 CST)
Kimberly Ann Foster
- using trackers (Tue May 23 2000 - 16:09:40 CDT)
Kiniu Wong
- "Draw" different things in different frames (Sat Apr 16 2005 - 20:16:02 CDT)
kinshuk_at_chem.iitb.ac.in
- installation problem vmd 1.8.6 on fedora 3 (Fri Feb 08 2008 - 00:15:50 CST)
- Re: residue selection (water molecule within 5 ang. to protein in simulation) (Mon Oct 15 2007 - 23:54:21 CDT)
- residue selection (water molecule within 5 ang. to protein in simulation) (Sun Oct 14 2007 - 02:21:32 CDT)
Kiraly Andras
- Re: VMD with Babel and chemical2vmd (Tue Apr 22 1997 - 13:58:15 CDT)
- VMD with Babel and chemical2vmd (Mon Apr 21 1997 - 18:35:26 CDT)
Kiran, Kotresh
- Can any of you help me out in building VMD pls (Fri Mar 08 2002 - 05:48:35 CST)
Kirby Vandivort
- Announce: VMD at Super Computing 99 (Thu Nov 11 1999 - 16:32:51 CST)
- Re: Use of coarse grain plugin (Tue Feb 28 2012 - 16:53:50 CST)
- Re: multiseq doesn't respond to ctrl key correctly (Fri Feb 10 2012 - 10:19:22 CST)
- Re: Clustering MD trajectories (Wed Sep 21 2011 - 14:52:54 CDT)
- Re: how to mark regions in Multiseq (Tue Mar 29 2011 - 10:13:48 CDT)
- Re: Multiseq in text mode (Tue Feb 08 2011 - 11:49:43 CST)
- Re: Installation problem with VMD, Multiseq, and BLAST (Tue Feb 01 2011 - 14:19:55 CST)
- Re: Installation problem with VMD, Multiseq, and BLAST (Tue Feb 01 2011 - 11:08:55 CST)
- Re: (Tue Dec 07 2010 - 11:15:01 CST)
- Re: Select non-redundant set using struture Qr not working (Tue Oct 19 2010 - 11:54:26 CDT)
- Re: multiseq/stamp alignment of coiled coil bundle and homo-dimer (Fri Jul 30 2010 - 14:30:05 CDT)
- Re: multiseq/stamp alignment of coiled coil bundle and homo-dimer (Thu Jul 29 2010 - 10:33:26 CDT)
- Re: multiseq/stamp alignment of coiled coil bundle and homo-dimer (Wed Jul 28 2010 - 16:36:10 CDT)
- Re: keyboard-mouse-controlled view for VMDMovie plugin (Tue Mar 09 2010 - 16:00:47 CST)
- Re: coarse-grained solvate usage (Fri Nov 20 2009 - 12:09:51 CST)
- Re: Installing Multiseq updates (Thu Sep 17 2009 - 11:54:44 CDT)
- Re: Installing Multiseq updates (Thu Sep 17 2009 - 10:44:07 CDT)
- Re: CGTools error: atom select: cannot parse selection text... (Tue Sep 15 2009 - 11:32:35 CDT)
- Re: CGTools error: atom select: cannot parse selection text... (Mon Sep 14 2009 - 14:16:24 CDT)
- Re: VMD, MultiSeq, STAMP (Mon Aug 31 2009 - 14:25:30 CDT)
- Re: (Thu Jul 10 2008 - 11:05:33 CDT)
kirtana S
- Use of coarse grain plugin (Wed Feb 08 2012 - 17:35:26 CST)
- Re: topotools (Sat Nov 12 2011 - 02:01:26 CST)
- Re: topotools (Fri Nov 11 2011 - 09:51:48 CST)
- Re: topotools (Thu Nov 10 2011 - 23:49:47 CST)
- graphical representation (Tue Nov 01 2011 - 12:21:29 CDT)
- topotools (Wed Oct 12 2011 - 15:45:13 CDT)
- redirecting to output (Wed Sep 21 2011 - 13:31:52 CDT)
- extra characters (Tue Sep 20 2011 - 10:54:07 CDT)
- Re: select each element of array (Mon Sep 19 2011 - 20:29:25 CDT)
- Re: select each element of array (Mon Sep 19 2011 - 17:31:43 CDT)
- select each element of array (Mon Sep 19 2011 - 11:11:59 CDT)
- output values in my script (Thu Sep 08 2011 - 17:38:04 CDT)
- Re: VMD align to principal axis (Wed Sep 07 2011 - 13:47:51 CDT)
- VMD align to principal axis (Tue Sep 06 2011 - 22:06:04 CDT)
- plugin (Mon Sep 05 2011 - 13:38:47 CDT)
- script (Mon Aug 08 2011 - 16:09:45 CDT)
- script (Mon Jul 18 2011 - 13:20:52 CDT)
- script (Tue Jul 12 2011 - 11:12:41 CDT)
- Re: import selection in array for script (Fri Jul 08 2011 - 15:36:50 CDT)
- import selection in array for script (Fri Jul 08 2011 - 14:37:11 CDT)
- script (Wed Jul 06 2011 - 17:04:29 CDT)
- problem with dispdev (Wed May 27 2009 - 15:59:41 CDT)
- Angles in psf file (Tue May 26 2009 - 15:05:20 CDT)
- bonds in .psf file (Thu May 21 2009 - 12:32:35 CDT)
- angles and dihedrals in .psf file (Thu May 21 2009 - 10:45:51 CDT)
- Thiol on gold (Thu May 07 2009 - 23:57:48 CDT)
KK Sahu
- VMD moviemaker (Tue Jun 07 2011 - 05:22:34 CDT)
Klaus Hoffmeier
- multiple alignment tool (Thu Feb 03 2005 - 10:59:10 CST)
- multiple alignment tool (Thu Feb 03 2005 - 10:30:52 CST)
- Multiple Sequence Alignment Extension (Tue Dec 14 2004 - 08:06:22 CST)
Klaus Kramer
- volume problems (Thu Mar 06 2003 - 12:56:57 CST)
klsale
- Re: multiple attempts before vmd starts up (Thu Oct 18 2007 - 13:35:36 CDT)
- Fitting trajectory frames to another molecule (Mon Jul 18 2005 - 18:49:15 CDT)
KM Tu
- A bug about "trans" command (Fri Sep 16 2011 - 10:33:49 CDT)
knowlesc_at_msu.edu
- Color problem. (Wed May 13 2009 - 13:55:31 CDT)
Knut JÃ¸rgen Bjuland
- Re: RE : pbc tools in vmd for simulation (Sun Apr 18 2010 - 00:54:27 CDT)
Knut Jørgen Bjuland
- Re: compile vmd (Wed Sep 22 2010 - 11:15:13 CDT)
- Re: Hydrogen bonds (Wed Sep 22 2010 - 11:19:53 CDT)
- compile vmd (Wed Sep 15 2010 - 11:54:17 CDT)
- Re: PQR parser failure in pqr plugin 0.5 and pqr plugin in latest alpha (Wed Aug 18 2010 - 16:14:53 CDT)
- PQR parser failure in pqr plugin 0.5 and pqr plugin in latest alpha (Wed Aug 18 2010 - 09:11:21 CDT)
- Tachyon 0.9.10 and recommende version of cuda? (Mon May 24 2010 - 05:10:37 CDT)
- vmd does not read pqr file correct, vmd parse chain information incorrect. (Tue Apr 20 2010 - 09:58:35 CDT)
- vmd does not read pqr file correct, vmd parse chain information incorrect. (Tue Apr 20 2010 - 09:53:57 CDT)
- Re: Problem with vmd and pqr file (Sun Apr 18 2010 - 00:55:54 CDT)
- Problem with vmd and pqr file (Sat Apr 17 2010 - 13:51:13 CDT)
- question about vmd use (Fri Apr 09 2010 - 02:26:32 CDT)
- build dependency (Fri Apr 09 2010 - 02:28:48 CDT)
- Re: problem with ied and vmd,ImportError: liblapack.so.3: cannot open shared object file: No such file or directory (Thu Mar 25 2010 - 09:49:05 CDT)
- problem with ied and vmd,ImportError: liblapack.so.3: cannot open shared object file: No such file or directory (Thu Mar 25 2010 - 04:26:35 CDT)
Knut Teigen
- Is it possible to read a discover trajectory into VMD? (Sat May 10 2003 - 09:11:23 CDT)
kohsj_at_ihpc.a-star.edu.sg
- Re: Movie Maker in VMD (Wed Jul 05 2006 - 12:01:00 CDT)
kong.winter
- vmd-1:how to merge two proteins (receptor & ligand) (Thu May 03 2007 - 16:06:20 CDT)
Konrad Hinsen
- Re: CCL:md rookie update (Thu Jan 08 1998 - 06:50:36 CST)
Koo Kee Kiat
- Errors compiling VMD on 1.8.3 on Solaris x86 (Fri Apr 01 2005 - 00:17:45 CST)
Kooser, Ara S
- LAMMPS reader (Tue Feb 22 2005 - 10:58:25 CST)
- RE: Conversion of trajectory files (Wed Nov 10 2004 - 10:11:32 CST)
- RE: xyz-file loading (Wed Sep 01 2004 - 15:32:50 CDT)
- RE: file type specification question (Fri Apr 16 2004 - 10:50:39 CDT)
- RE: file type specification question (Tue Apr 13 2004 - 16:08:35 CDT)
- RE: Viewing MD trajectories (Tue Apr 13 2004 - 15:46:35 CDT)
- RE: file type specification question (Tue Apr 13 2004 - 15:04:55 CDT)
- RE: xyz aluminium connectivity questions (Tue Apr 13 2004 - 10:14:28 CDT)
- RE: xyz aluminium connectivity questions (Tue Apr 13 2004 - 09:42:10 CDT)
- Re: file type specification question (Fri Apr 09 2004 - 10:37:32 CDT)
- Typing Au(111) surface (Wed Apr 07 2004 - 15:41:25 CDT)
- Atom typing (Tue Mar 30 2004 - 12:24:30 CST)
- xyz to psf (Wed Mar 24 2004 - 11:22:42 CST)
- To many bonds error. (Tue Mar 23 2004 - 13:45:15 CST)
Kos
- Re: dcd large files, charmm-VMD (Wed May 04 2005 - 11:14:22 CDT)
- Re: dcd large files, charmm-VMD (Tue Apr 26 2005 - 14:31:51 CDT)
- Re: dcd large files, charmm-VMD (Fri Apr 22 2005 - 11:00:38 CDT)
- Re: dcd large files, charmm-VMD (Fri Apr 22 2005 - 10:43:11 CDT)
- dcd large files, charmm-VMD (Thu Apr 21 2005 - 20:29:21 CDT)
- dihedral & g(r) (Tue Apr 12 2005 - 15:16:55 CDT)
koushik.k
- water molecules shooting during SMD + PDB WRITE ERROR (Tue Aug 03 2010 - 06:45:25 CDT)
kovzany_at_go.com
- Q:selection of atoms on the surface of a molecule (Tue Feb 28 2006 - 17:22:13 CST)
Kovács, Sándor Ádám
- Re: Loading Gaussian Log File into Paratool (Mon Mar 15 2010 - 16:54:39 CDT)
kr_at_isise.rl.ac.uk
- Re: vibration (Sat Jun 08 2002 - 02:56:39 CDT)
Kramer Campen
- Re: Questions on VMD (Thu May 17 2007 - 17:45:28 CDT)
Krigel, Igal
- running LAMMPS output via VMD (Mon Feb 01 2010 - 06:10:56 CST)
Krishnan, Marimuthu
- RE: local packing density around a chemical group (say, a methyl group or a side chain) (Thu Apr 23 2009 - 12:11:07 CDT)
- local packing density around a chemical group (say, a methyl group or a side chain) (Thu Apr 23 2009 - 10:15:44 CDT)
- time correlation function (Tue Mar 25 2008 - 22:44:40 CDT)
Kristian Mueller
- need help - hardware stereo on a Windows PC (Thu Apr 12 2001 - 11:41:36 CDT)
Kristin Wunsch
- Electron density (Wed Jan 23 2008 - 09:03:12 CST)
Kristina Woods
- Help with running IED in VMD (Tue Aug 30 2005 - 19:38:30 CDT)
- a problem using python in vmd (Thu Aug 25 2005 - 10:56:15 CDT)
Kristy L. Mardis
- attempting to source a script (Wed Feb 11 2004 - 15:51:17 CST)
Kshatresh Dutta Dubey
- How to delete a residue (Tue Oct 26 2010 - 00:51:45 CDT)
Kuen Phon Wu
- caculate the RMSD of 10 DNA (Wed Mar 07 2001 - 22:50:24 CST)
Kukol, Andreas
- specden - IR spectral density calculator plugin (Thu Aug 04 2011 - 03:25:17 CDT)
kumar prashanth
- selection update (Fri Jun 26 2009 - 08:03:21 CDT)
- Memory allocation problem (Mon Jun 15 2009 - 04:06:49 CDT)
Kurt Smith
- data file extensions (Wed May 24 2006 - 11:41:21 CDT)
- Re: Sphere size (Thu Apr 21 2005 - 15:04:39 CDT)
- Sphere size (Wed Apr 20 2005 - 17:18:45 CDT)
- loading PDB+PSF (Tue Mar 16 2004 - 03:01:10 CST)
L. Michel Espinoza-Fonseca
- Re: Control of aminoacid ionization in VMD (Tue Nov 03 2009 - 05:24:46 CST)
- Re: using NAMD with SPC water (Mon Oct 26 2009 - 10:54:56 CDT)
- Re: using NAMD with SPC water (Mon Oct 26 2009 - 10:24:19 CDT)
- Re: using NAMD with SPC water (Mon Oct 26 2009 - 09:40:33 CDT)
- Re: Secondary Structure Depiction (Tue Apr 21 2009 - 10:33:50 CDT)
- Re: MM/PBSA in VMD (Fri Feb 27 2009 - 06:49:43 CST)
- Re: defintion of alpha helix in vmd? (Tue Dec 16 2008 - 04:41:47 CST)
- Re: entropy calculations (Fri Nov 21 2008 - 16:05:11 CST)
- Re: convert THR and SER to the phosphorylated forms (Wed Oct 22 2008 - 04:01:01 CDT)
- water residence time (Wed Sep 24 2008 - 15:56:53 CDT)
- Re: Movie maker problem in VMD (Wed Sep 24 2008 - 11:56:11 CDT)
- Re: psfgen problem (Thu Sep 18 2008 - 10:13:55 CDT)
- Re: How to ionize a Shape Based CG Model? (Mon Sep 15 2008 - 10:02:27 CDT)
- Re: TXT program editor (Fri Aug 29 2008 - 10:58:59 CDT)
- Re: problem with correct visualization of residues (Tue Jul 15 2008 - 13:53:54 CDT)
- Re: problem with correct visualization of residues (Tue Jul 15 2008 - 13:44:13 CDT)
- Re: problem with correct visualization of residues (Tue Jul 15 2008 - 13:08:55 CDT)
- problem with correct visualization of residues (Tue Jul 15 2008 - 12:50:58 CDT)
- Re: enantiomers (Fri Jun 20 2008 - 09:10:31 CDT)
- Re: preriodic box problem (Fri May 30 2008 - 05:20:24 CDT)
- change residue name and write a trajectory file (Thu Apr 10 2008 - 17:02:13 CDT)
- Re: old VMD post - RE: measuring distances in vmd tkon (Thu Mar 20 2008 - 13:35:33 CDT)
- Re: old VMD post - RE: measuring distances in vmd tkon (Thu Mar 20 2008 - 13:46:21 CDT)
- Re: running ca-dist.tcl (Thu Mar 20 2008 - 10:38:50 CDT)
- Re: closewater.tcl (Mon Mar 17 2008 - 15:41:14 CDT)
- Solvent accessible surface area calculation (Mon Mar 10 2008 - 14:41:08 CDT)
- Re: VMD languaje information (Tue Mar 04 2008 - 15:48:41 CST)
- Re: VMD languaje information (Tue Mar 04 2008 - 14:54:36 CST)
- Re: spacial distribution function (Tue Feb 19 2008 - 19:48:02 CST)
- Fwd: spacial distribution function (Tue Feb 19 2008 - 18:54:53 CST)
- spacial distribution function (Tue Feb 19 2008 - 18:52:15 CST)
- Re: variables from VMD to psfgen (Mon Feb 11 2008 - 18:22:49 CST)
- measure SASA (Sun Feb 10 2008 - 17:48:12 CST)
- Re: namd energy plugin (Sun Feb 10 2008 - 16:10:36 CST)
- namd energy plugin (Sun Feb 10 2008 - 15:44:04 CST)
- Re: proximity of residues (Wed Jan 23 2008 - 04:21:01 CST)
- Re: local urea concentration (Mon Jan 21 2008 - 12:05:32 CST)
- local urea concentration (Mon Jan 21 2008 - 11:17:14 CST)
- Re: SSE from the protein sequence (Mon Jan 21 2008 - 10:51:11 CST)
- Re: MSMS plugin for windows (Thu Jan 17 2008 - 09:26:26 CST)
- measure contacts script (Fri Jan 11 2008 - 05:57:10 CST)
- Re: Hydrogens in vmd (Thu Jan 03 2008 - 15:17:54 CST)
- Re: calculation of alpha helical content (Tue Dec 11 2007 - 11:18:14 CST)
- calculation of alpha helical content (Tue Dec 11 2007 - 10:29:24 CST)
- Re: drawing trajectory of a molecule (Fri Dec 07 2007 - 09:40:51 CST)
- Re: drawing trajectory of a molecule (Fri Dec 07 2007 - 09:29:56 CST)
- drawing trajectory of a molecule (Fri Dec 07 2007 - 08:30:04 CST)
- Re: Render Snapshot from the Tcl console (jpg gif format) (Sun Dec 02 2007 - 17:59:55 CST)
- Re: Render Snapshot from the Tcl console (jpg gif format) (Sun Dec 02 2007 - 17:58:31 CST)
- Re: Timeline viewer (Sat Dec 01 2007 - 08:05:39 CST)
- Re: solvate crashes (Thu Nov 22 2007 - 05:45:12 CST)
- Re: analysing big trajectories (fwd) (Tue Nov 20 2007 - 18:39:03 CST)
- Re: analysing big trajectories (fwd) (Tue Nov 20 2007 - 18:03:25 CST)
- Re: Small molecules (Fri Oct 12 2007 - 18:44:00 CDT)
- Re: query regarding membrane building (Sat Sep 29 2007 - 14:05:01 CDT)
- Re: topology file in /linux/src/vmd-1.8.6/plugins/noarch/tcl/readcharmmtop1.0/top_all27_prot_lipid_na.inp (Tue Sep 25 2007 - 19:33:46 CDT)
- Re: sidechain correlated motions (Fri Sep 21 2007 - 10:41:21 CDT)
- sidechain correlated motions (Wed Sep 19 2007 - 17:18:04 CDT)
- Re: changing the tile angle of a peptide embedded in a membrane (Mon Sep 10 2007 - 13:05:36 CDT)
- changing the tile angle of a peptide embedded in a membrane (Mon Sep 10 2007 - 12:57:13 CDT)
- changing the tilt angle of a peptide embedded in a membrane (Mon Sep 10 2007 - 13:08:38 CDT)
- Re: namd-l: STRIDE Algorithm (Mon Sep 10 2007 - 10:43:56 CDT)
- Re: peptide builder (Fri Sep 07 2007 - 11:26:41 CDT)
- Fwd: peptide builder (Fri Sep 07 2007 - 11:35:39 CDT)
- Re: Monte Carlo conformational search (Thu Aug 09 2007 - 07:58:19 CDT)
- Re: namd-l: How to calculate the C alpha RMSD from NAMD trajectory (Fri Aug 03 2007 - 02:59:02 CDT)
- adding urea to a protein-water system (Mon Jul 30 2007 - 05:05:46 CDT)
- Re: parallel capabilities (Tue Jun 26 2007 - 15:16:58 CDT)
- Re: Paratool Window (Mon Jun 11 2007 - 14:52:14 CDT)
- Re: AutoPSF (Thu Mar 15 2007 - 17:13:38 CDT)
- Re: AutoPSF (Thu Mar 15 2007 - 16:41:55 CDT)
- Re: AutoPSF (Thu Mar 15 2007 - 15:56:59 CDT)
- Re: BPS Meeting @ Baltimore (Thu Mar 08 2007 - 09:40:16 CST)
- Re: VMD open GL Display problem (Tue Feb 27 2007 - 10:06:26 CST)
- Re: rmsf calculations (Tue Feb 27 2007 - 05:51:47 CST)
- Re: problem with autopsf (Thu Feb 15 2007 - 08:16:06 CST)
- problem with autopsf (Thu Feb 15 2007 - 07:44:18 CST)
- Re: namd-l: Re: ionize (big, big, big system!) (Mon Feb 12 2007 - 17:49:25 CST)
- Re: ionize (big, big, big system!) (Mon Feb 12 2007 - 11:19:57 CST)
- ionize (big, big, big system!) (Mon Feb 12 2007 - 10:58:32 CST)
- Re: Saving work in VMD--this seems ridiculously difficult! (Thu Feb 08 2007 - 17:13:52 CST)
- Re: Delete frames in a script (Tue Jan 30 2007 - 11:02:41 CST)
- Re: Delete frames in a script (Tue Jan 30 2007 - 11:00:41 CST)
- Re: Delete frames in a script (Tue Jan 30 2007 - 10:38:22 CST)
- Re: Windows/Cannot generate .dx file! (Mon Jan 15 2007 - 11:24:43 CST)
- changing the representation of a vector (Fri Nov 17 2006 - 10:09:55 CST)
- Re: modelling phosphorylation (Mon Sep 18 2006 - 09:45:03 CDT)
- Re: DPPC Bilayer Size (Thu Sep 14 2006 - 18:11:28 CDT)
- saving charges in the B column (Fri Sep 08 2006 - 18:53:11 CDT)
- dipole moment (Fri Sep 08 2006 - 11:46:59 CDT)
- Re: autoionize behaviour on big systems (Mon Aug 28 2006 - 01:12:18 CDT)
- autoionize behaviour on big systems (Mon Aug 28 2006 - 00:44:24 CDT)
- Re: problems with autoionize (Thu Aug 24 2006 - 13:17:30 CDT)
- Re: problems with autoionize (Tue Aug 22 2006 - 21:18:06 CDT)
- Re: problems with autoionize (Tue Aug 22 2006 - 19:16:29 CDT)
- Re: problems with autoionize (Tue Aug 22 2006 - 17:55:02 CDT)
- problems with autoionize (Tue Aug 22 2006 - 17:36:39 CDT)
- corrigendum: error when solvating a system (Mon Aug 21 2006 - 20:51:54 CDT)
- error when solvating a system (Mon Aug 21 2006 - 20:49:27 CDT)
- changing the name of a residu

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