VMD-L Mailing List

12043 messages sorted by: [ date ] [ thread ] [ subject ] [ attachment ]
About this archive

Starting: Thu Dec 19 1996 - 11:40:41 CST
Ending: Thu Jul 03 2008 - 16:19:08 CDT

• $B:,>k(J $B6Q(J
  • vizualization of modes (Tue Sep 30 2003 - 03:31:55 CDT)
  • Re: ftp failed (Thu Aug 29 2002 - 03:21:12 CDT)
  • Re: ftp failed (Tue Aug 27 2002 - 02:35:49 CDT)
• Y. U. Sasidhar
  • displaying hydrogen bonds when hydrogens are not available (Thu Jun 19 2008 - 07:34:23 CDT)
• #WONG CHEE HOW#
  • Fullerene coordinates (Fri Aug 27 2004 - 03:50:03 CDT)
  • Colouring (Wed Jun 18 2003 - 01:02:39 CDT)
  • RE: animation question (Fri Mar 28 2003 - 00:10:24 CST)
  • Maximum number of atoms/bonds (Tue Jan 14 2003 - 19:04:54 CST)
  • Loading XYZ trajectory file (Mon Dec 09 2002 - 19:17:00 CST)
  • Problems with color (Mon Nov 11 2002 - 09:52:17 CST)
  • Beta color of atoms (Thu Nov 07 2002 - 19:57:26 CST)
  • RE: VMD 1.8 alpha 29 available for testing! (Fri Nov 01 2002 - 22:48:10 CST)
  • RE: VMD 1.8 alpha 29 available for testing! (Fri Nov 01 2002 - 22:47:01 CST)
  • Coloring of atoms/molecules (Thu Oct 31 2002 - 23:24:13 CST)
  • How to show the strain energies of each atom (Thu Sep 19 2002 - 02:36:27 CDT)
• .
  • VMD 1.2b2 Linux & MSMS ... (Sun May 17 1998 - 08:55:16 CDT)
• 04215287d_at_polyu.edu.hk
  • .pdb file from XMD (Thu Nov 02 2006 - 08:39:44 CST)
• 1(484)993-7152 Marty
  • ! Obtain degrees from Prestigious non-accredite dUniversities (Sat Jun 23 2007 - 01:45:28 CDT)
• _at_huji.ac.il
  • Re: sending arguments to tcl (Sun Feb 04 2007 - 02:21:02 CST)
  • sending arguments to tcl (Thu Feb 01 2007 - 13:39:20 CST)
  • Re: [Fwd: pdb from trajectory] some clarification (Wed Jan 24 2007 - 04:37:40 CST)
  • [Fwd: pdb from trajectory] some clarification (Tue Jan 23 2007 - 09:41:49 CST)
  • pdb from trajectory (Tue Jan 23 2007 - 09:16:29 CST)
  • Re: [Fwd: Re: create new topology file for new molecule] (Wed Jan 10 2007 - 03:01:50 CST)
  • create new topology file for new molecule (Tue Jan 09 2007 - 10:06:25 CST)
  • recenter peptide in PBC (Tue Dec 26 2006 - 04:54:20 CST)
  • vmd questions (Thu Dec 21 2006 - 05:09:59 CST)
• a a
  • Re: redhat linux vmd (Mon May 22 2006 - 21:18:43 CDT)
  • redhat linux vmd (Mon May 22 2006 - 03:51:59 CDT)
• A D
  • vmd shuts itself down (Thu Jun 26 2008 - 19:20:58 CDT)
• Aaron Oakley
  • Script to rendering ANISOU records in VMD (Tue Jun 19 2007 - 21:22:51 CDT)
  • Compute B-factor from MD run (Fri Sep 12 2003 - 03:02:42 CDT)
  • protein/carbohydrate (Tue Sep 02 2003 - 03:07:53 CDT)
  • protein/carbohydrate (Fri Aug 08 2003 - 22:48:54 CDT)
• Aaron.Oakley_at_csiro.au
  • problem loading trajectory in VMD under windows XP (Tue Jun 10 2008 - 18:41:24 CDT)
• ABEL Stephane 175950
  • RE : plot residues without hydrogen atoms (Tue May 20 2008 - 11:11:46 CDT)
  • plot residues without hydrogen atoms (Tue May 20 2008 - 07:02:41 CDT)
  • problem with time line plugin in VMD (Fri Jan 18 2008 - 03:36:30 CST)
• Abi Ghanem josephine
  • Draw a circle (Fri Mar 23 2007 - 09:47:12 CDT)
• accutone_at_atlsky.com
  • 99 Toyotas as low as 2% over invoice (Sat Sep 05 1998 - 19:10:53 CDT)
• Adam Kubach
  • docking (Wed Sep 29 2004 - 20:20:38 CDT)
  • Phantom and VMD (Mon Sep 20 2004 - 15:18:18 CDT)
• Adam Marcus
  • Copying a selection (Mon Mar 22 2004 - 01:04:29 CST)
• Adelene Sim
  • Plotting Number of Hbonds and % Helicity with Time (Sat Nov 11 2006 - 18:11:22 CST)
• Adilah Hussien
  • Tracking bond length changes in a simulation (Tue Jun 19 2007 - 04:33:22 CDT)
• Adrain Koh
  • Apologies (Wed Nov 10 2004 - 04:12:55 CST)
  • Conversion of trajectory files (Tue Nov 09 2004 - 21:43:52 CST)
  • Re: Converting .txt trajectory files to VMD compatible format (Tue Nov 09 2004 - 21:40:18 CST)
  • Converting .txt trajectory files to VMD compatible format (Fri Nov 05 2004 - 04:43:40 CST)
• Adrian E. Roitberg
  • pdb naming convention (Wed Apr 17 2002 - 07:59:32 CDT)
  • Re: New version of VMD movie script/plugin available (Wed Mar 13 2002 - 07:22:32 CST)
  • immersadesk (Tue Apr 16 2002 - 09:06:25 CDT)
• Adrian Kaats
  • Re: How to see the original Origin (0,0,0, coordinate) of a system (Thu Mar 27 2008 - 15:56:52 CDT)
  • Re: Loading a PDB file with different atom counts in models (Tue Mar 25 2008 - 07:41:38 CDT)
  • Loading a PDB file with different atom counts in models (Fri Mar 21 2008 - 09:19:35 CDT)
  • atomselect protein (Thu Mar 20 2008 - 16:39:54 CDT)
  • ion 'channel axis' (Wed Mar 28 2007 - 15:55:17 CDT)
  • OmpF biological unit (Thu Mar 15 2007 - 18:58:17 CDT)
  • Re: Displaying biological unit revisited (Thu Nov 02 2006 - 14:23:41 CST)
  • Displaying biological unit revisited (Tue Oct 31 2006 - 12:22:19 CST)
• Adrian Koh
  • RE: Displaying Counter alongside animation (Mon Feb 11 2008 - 03:08:44 CST)
  • Displaying Counter Alongside Animation (Tue Feb 05 2008 - 00:20:36 CST)
  • Assigning Color Codes for stress/force in .xyz trajectory files (Fri Feb 09 2007 - 00:08:26 CST)
  • Re: VMD 1.8.3 works ok for 64-bit windows, but not VMD 1.8.5 (Thu Nov 23 2006 - 23:31:49 CST)
  • VMD 1.8.3 works ok for 64-bit windows, but not VMD 1.8.5 (Thu Nov 23 2006 - 22:07:27 CST)
  • Installing VMD Windows version on 64-bit Windows Environment (Tue Nov 21 2006 - 21:30:01 CST)
  • Re: Altering Definition of Molecular Coloring Method (Mon Jul 31 2006 - 23:18:19 CDT)
  • Altering Definition of Molecular Coloring Method (Mon Jul 31 2006 - 05:08:56 CDT)
  • Movie Maker in VMD (Wed Jul 05 2006 - 04:30:49 CDT)
  • Re: Renaming Molecule Names in existing .xyz trajectory files (Tue Jul 04 2006 - 23:07:57 CDT)
  • Renaming Molecule Names in existing .xyz trajectory files (Tue Jul 04 2006 - 01:44:28 CDT)
  • Changing Graphical Representations (Wed Jan 25 2006 - 00:15:54 CST)
  • Adding New Color Definitions to Color Form (Tue Jan 24 2006 - 03:08:48 CST)
  • Changing Default Settings for VMD Main Window (Thu Jan 19 2006 - 05:08:23 CST)
  • Error Encountered in making vmdmovie (Tue May 03 2005 - 02:42:00 CDT)
  • Re: Customizing VMD Sessions (Thu Apr 14 2005 - 06:03:41 CDT)
  • Customizing VMD Sessions (Thu Apr 14 2005 - 02:49:19 CDT)
  • Defining Bonds in .xyz file format (Wed Feb 16 2005 - 02:29:09 CST)
• Adrian Roitberg
  • CMYK (Tue Oct 30 2007 - 16:08:37 CDT)
  • RNA (Mon May 14 2007 - 14:25:03 CDT)
  • vmd/gaussian cubes (Fri Mar 02 2007 - 10:11:08 CST)
  • question about rotations (Fri Feb 09 2007 - 08:33:34 CST)
  • Volume Slice (Wed Jan 31 2007 - 15:07:45 CST)
  • Re: visualising protein dynamics (Wed Jun 22 2005 - 16:57:47 CDT)
• Adrian turjanski
  • Clip (Wed Sep 28 2005 - 20:49:04 CDT)
  • X error (Sun Sep 04 2005 - 16:00:59 CDT)
  • Problems with VMD in Federa 4 (x86_64) (Sat Aug 27 2005 - 17:22:00 CDT)
• Ahmed Nawar
  • freevr tool transformation (Thu Jan 03 2008 - 00:28:31 CST)
  • FreeVR wand (Tue Dec 04 2007 - 03:42:13 CST)
  • Re: cave (Tue Nov 27 2007 - 01:00:42 CST)
  • cave (Mon Nov 26 2007 - 06:12:41 CST)
  • RE: Suspected SpamFR:RE: cave (Mon Nov 26 2007 - 00:54:23 CST)
  • RE: cave (Sun Nov 25 2007 - 09:06:37 CST)
  • cave (Thu Nov 22 2007 - 06:09:24 CST)
• Ahmet Bakan
  • RE: Counting number of hydrogen bonds in the representation (Wed Sep 15 2004 - 07:44:29 CDT)
  • RE: Counting number of hydrogen bonds in the representation (Wed Sep 15 2004 - 03:39:56 CDT)
  • Euro QSAR 2004 (Sun Sep 05 2004 - 15:42:27 CDT)
  • RE: namd-l: cff91 force field in namd + A Question (Wed Aug 25 2004 - 10:53:59 CDT)
  • How to enable Python on Windows XP (Fri Jul 30 2004 - 16:30:09 CDT)
  • Average coordinates (Thu Jun 24 2004 - 13:51:12 CDT)
  • RE: Torsional Angles (Mon May 31 2004 - 15:54:52 CDT)
  • RE: Torsional Angles (Sun May 30 2004 - 19:41:49 CDT)
  • Torsional Angles (Wed May 26 2004 - 13:52:53 CDT)
  • RE: measuring distances in vmd tkon (Thu May 06 2004 - 17:45:21 CDT)
  • RE: Selection problem on TkCon (Tue May 04 2004 - 18:57:39 CDT)
  • RE: Selection problem on TkCon (Tue May 04 2004 - 06:47:55 CDT)
  • RE: Selection problem on TkCon (Mon May 03 2004 - 13:42:43 CDT)
  • RE: Selection problem on TkCon (Mon May 03 2004 - 05:56:25 CDT)
  • Selection problem on TkCon (Sun May 02 2004 - 19:55:43 CDT)
  • RE: MOE discussion (Wed Apr 28 2004 - 17:26:07 CDT)
  • TCL string operation (Sat Apr 03 2004 - 07:48:40 CST)
  • Sine Cosine (Sat Mar 13 2004 - 18:06:04 CST)
  • RE: Rotatind a chain (some further Qs) (Fri Mar 12 2004 - 13:43:41 CST)
  • Rotatind a chainn (Fri Mar 12 2004 - 08:59:09 CST)
• ailong
  • antialiasing problem (Thu Nov 20 2003 - 12:54:22 CST)
• Aitor Gonzalez
  • Re: bond length definition (Wed Apr 25 2001 - 04:41:32 CDT)
  • Re: animation and reps (Mon Apr 09 2001 - 08:17:52 CDT)
  • python vmd interface (Thu Mar 29 2001 - 08:57:32 CST)
  • Re: python loop (Fri Mar 16 2001 - 12:39:34 CST)
  • python loop (Fri Mar 16 2001 - 04:40:38 CST)
  • Re: switching off the location axes (Fri Mar 09 2001 - 03:10:03 CST)
  • switching off the location axes (Fri Mar 09 2001 - 02:48:53 CST)
  • Re: making a movie with a serie of pdb's (Fri Dec 08 2000 - 05:26:00 CST)
  • making a movie with a serie of pdb's (Thu Dec 07 2000 - 06:51:07 CST)
• Ajith Gunaratne
  • (no subject) (Sun Apr 11 2004 - 23:36:05 CDT)
• Akemi Yagi
  • Main window (button bars) does not start (Tue May 14 2002 - 10:02:18 CDT)
• Akiyama, Jotaro
  • Re: Coloring by type? (Fri Nov 12 2004 - 02:45:10 CST)
  • Re: Coloring by type? (Thu Nov 11 2004 - 18:56:02 CST)
  • Re: LAMMPS visualization (Thu Nov 11 2004 - 18:27:15 CST)
  • Coloring by type? (Mon Nov 08 2004 - 03:06:34 CST)
• Akshay Patny
  • RE: measure XYZ dimensions of a system (Wed Jan 24 2007 - 12:47:47 CST)
  • measure XYZ dimensions of a system (Wed Jan 24 2007 - 10:47:00 CST)
  • cutting short a DMPC bilayer in VMD (Thu Oct 05 2006 - 21:23:43 CDT)
  • VMD PDB to LEAP Readable PDB (Wed Oct 04 2006 - 20:09:14 CDT)
  • Solvate Plug-In -b Boundary variable (Thu Sep 21 2006 - 10:18:10 CDT)
  • which POPC Bilayer is better to start? (Wed Sep 20 2006 - 16:40:07 CDT)
  • GPCR-Membrane Issue (Wed Sep 20 2006 - 12:29:49 CDT)
  • RE: Centering GPCR onto Lipid Bilayer (Tue Sep 19 2006 - 16:19:59 CDT)
  • Centering GPCR onto Lipid Bilayer (Mon Sep 18 2006 - 14:28:35 CDT)
  • FW: Membrane PlugIn issue (Sat Sep 16 2006 - 14:20:23 CDT)
  • RE: DPPC Bilayer Size (Fri Sep 15 2006 - 12:07:51 CDT)
  • DPPC Bilayer Size (Thu Sep 14 2006 - 13:49:06 CDT)
  • RE: protein in membrane (Tue Sep 12 2006 - 16:05:04 CDT)
  • RE: protein in membrane (Tue Sep 12 2006 - 15:45:31 CDT)
• Al Courey
  • rendering high resolution images (Mon Apr 24 2006 - 16:19:52 CDT)
• Al-Rawi, Ahlam
  • external force (Tue Oct 24 2006 - 11:41:54 CDT)
  • external force (Wed Oct 18 2006 - 19:33:51 CDT)
  • RE: psf for protein (Tue Sep 19 2006 - 12:03:55 CDT)
  • psf for protein (Mon Sep 18 2006 - 17:24:27 CDT)
  • Water and protein (Wed May 03 2006 - 13:40:44 CDT)
• Alan Wilter Sousa da Silva
  • Re: secondary structure update (Mon Nov 03 2003 - 04:16:27 CST)
  • nvidia driver (Tue Sep 30 2003 - 09:30:48 CDT)
  • Re: Python's future in VMD (Tue Sep 30 2003 - 07:48:28 CDT)
  • Re: stereo (Wed May 28 2003 - 13:02:00 CDT)
  • Re: Surfaces/Cavities (Thu Jan 23 2003 - 06:21:18 CST)
  • Re: Which drawing method is used in the picture? (Wed Apr 10 2002 - 10:20:05 CDT)
  • Re: Plotting elect. pot. surface (Wed Mar 13 2002 - 08:05:14 CST)
  • Re: New version of VMD movie script/plugin available (Wed Mar 13 2002 - 07:58:33 CST)
  • Molscript (Wed Mar 13 2002 - 07:32:50 CST)
  • Re: Removing perspective projection at startup (Thu Feb 28 2002 - 12:27:47 CST)
  • Re: Plotting elect. pot. surface (Tue Feb 26 2002 - 14:16:22 CST)
  • Re: Plotting elect. pot. surface (Mon Feb 25 2002 - 14:40:57 CST)
  • Plotting elect. pot. surface (Mon Feb 25 2002 - 12:15:52 CST)
• alarcon_at_lncc.br
  • STL files (Thu Jul 17 2003 - 11:07:02 CDT)
  • STL format file - rendering (Thu Dec 19 2002 - 13:39:20 CST)
• Alba Colet Subirachs
  • VMD 3D stereo hardware (Thu Mar 06 2008 - 03:16:25 CST)
  • VMD languaje information (Tue Mar 04 2008 - 10:24:09 CST)
• Albert Sun
  • Re: Picking atoms: romoving or changing the position of atoms (Mon Jul 19 2004 - 11:51:50 CDT)
  • Picking atoms: romoving or changing the position of atoms (Sun Jul 18 2004 - 09:17:00 CDT)
  • could not make avi file (Tue Apr 13 2004 - 10:58:49 CDT)
  • subscribe and questions (Fri Nov 14 2003 - 13:06:34 CST)
• Alberto Perez
  • Re: complete residues within (Thu Mar 06 2008 - 04:38:02 CST)
• Alberto Sergio Garay
  • rmsd per residue (Tue Jul 01 2008 - 05:36:46 CDT)
  • Slow tcl/tk script for trajectory analysis (Fri May 16 2008 - 14:34:40 CDT)
• Alberto Torres
  • Color of bond betwen atoms with different colors (Fri May 16 2008 - 15:35:40 CDT)
• aldo jongejan
  • Babel and VMD (Tue Mar 03 1998 - 11:05:07 CST)
• Alec Robertson
  • Re: fglrx driver workaround? (Thu Mar 31 2005 - 10:18:45 CST)
  • fglrx driver workaround? (Thu Mar 31 2005 - 09:53:21 CST)
• Alejandro Ortega
  • Maximum velocities (Thu Jul 03 2008 - 16:03:13 CDT)
  • Writepdb with Solvation Box (Tue May 06 2008 - 12:50:23 CDT)
  • Topology file (Fri Apr 04 2008 - 11:24:14 CDT)
  • DCD file (Fri Mar 07 2008 - 12:07:23 CST)
• Aleksander Debinski
  • lags on VDW (Mon Dec 12 2005 - 03:54:33 CST)
• Alessandro Cembran
  • Trajectory title (Wed Apr 16 2008 - 07:53:47 CDT)
  • Re: how to visualize Charmm generated files (Wed Jun 06 2007 - 18:15:41 CDT)
  • NAMD Energy - Hexagonal Cell (Mon Mar 12 2007 - 18:10:14 CDT)
  • Re: namd-l: Re: ionize (big, big, big system!) (Mon Feb 12 2007 - 18:57:05 CST)
  • Re: namd-l: Re: ionize (big, big, big system!) (Mon Feb 12 2007 - 11:37:20 CST)
• Alessio Alexiadis
  • dipole (Wed Mar 19 2008 - 06:54:21 CDT)
  • combine together two PBD/PSF files (Wed Nov 07 2007 - 07:38:42 CST)
  • merge pbd psf files (update) (Wed Nov 07 2007 - 07:47:48 CST)
  • time step (Wed Oct 03 2007 - 07:44:13 CDT)
  • hbonds (how to count) (Wed Oct 03 2007 - 03:28:52 CDT)
• Alex Vakhrouchev
  • Re: console in vmd-1.8.3 amd64 is blank (like white text on white background) so I can't see any output messages (Tue Jun 07 2005 - 00:09:22 CDT)
• Alexander Balaeff
  • Re: [VMD TECH] Tracing VMD Variables (Part II) (Thu May 01 1997 - 16:29:52 CDT)
  • Files closing/Memory issues in VMD (Mon Feb 19 2007 - 14:03:54 CST)
• Alexander Farley
  • Re: Chromium (Sun Sep 08 2002 - 09:44:58 CDT)
  • Re: stereo on linux: DTI monitors? (Sun Sep 08 2002 - 09:36:48 CDT)
• Alexander Metz
  • How to get rubber-like surface with Tachyon renderer (Mon Feb 25 2008 - 09:37:02 CST)
• Alexander Peyser
  • Re: VMD 1.8.2 and 1.8.3 fail on MacOS X after upgrade to 10.3.8 (Wed Mar 02 2005 - 12:45:30 CST)
  • Re: User colors and povray (Wed Feb 23 2005 - 16:01:19 CST)
• Alexander Spaar
  • Re: AMBER pbsa electrostatic potential map (Tue Apr 19 2005 - 03:58:55 CDT)
  • UHBD-grids (Fri Apr 15 2005 - 04:12:57 CDT)
• Alexandr Isayev
  • Re: MultiSeq on the windows vista OS (Mon Sep 24 2007 - 14:25:00 CDT)
  • Re: Displaying the periodic box ... (Thu May 24 2007 - 10:59:08 CDT)
  • Re: Tachyon renderer (Wed May 16 2007 - 23:40:54 CDT)
  • count variable number of molecules (Wed Feb 28 2007 - 14:23:11 CST)
  • Re: rendering time bars or other vmd added graphics with povray (Mon Feb 05 2007 - 11:23:12 CST)
  • Re: Beginner's problem (Tue Nov 14 2006 - 12:01:36 CST)
  • Re: .pdb file from XMD (Thu Nov 02 2006 - 09:18:20 CST)
  • Re: CPK Graphical Representation (Fri Oct 20 2006 - 11:48:40 CDT)
  • Re: movie (Wed Oct 11 2006 - 18:46:16 CDT)
  • Re: puts format (Wed Sep 13 2006 - 16:18:04 CDT)
  • Re: Movie Maker in VMD (Wed Jul 05 2006 - 10:27:02 CDT)
  • Re: Making a Movie (Tue Jun 20 2006 - 13:07:45 CDT)
• alexandra.marques_at_fc.up.pt
  • secondary_struct script (Wed Apr 18 2007 - 11:28:43 CDT)
  • hbond calculation (Mon Mar 26 2007 - 15:49:19 CDT)
  • hbonds problem (Sat Feb 17 2007 - 17:52:45 CST)
  • Re: sasa by residue (Thu Jan 11 2007 - 13:42:07 CST)
  • sasa by residue (Mon Jan 08 2007 - 19:01:04 CST)
  • python (Sun Nov 12 2006 - 11:23:39 CST)
  • Re: output file format (Fri Sep 01 2006 - 14:20:35 CDT)
  • output file format (Thu Aug 31 2006 - 10:20:14 CDT)
  • Re: water numbering (Mon Aug 28 2006 - 10:52:03 CDT)
  • water numbering (Mon Aug 28 2006 - 06:50:33 CDT)
  • gyration radius for a trajectory (Fri Aug 25 2006 - 05:38:06 CDT)
  • large mdcrd files (Sun Aug 20 2006 - 07:56:30 CDT)
• Alexandre A. Vakhrouchev
  • Re: Away from VMD-L/email until July 8th... (Thu Jun 19 2008 - 21:09:17 CDT)
  • Re: Dipole moment? (Sat Jun 07 2008 - 13:25:40 CDT)
  • Dipole moment? (Sat Jun 07 2008 - 07:21:55 CDT)
  • Re: Total list of Tcl features (Sat Jun 07 2008 - 10:31:31 CDT)
  • Re: Total list of Tcl features (Sat Jun 07 2008 - 01:14:37 CDT)
  • Total list of Tcl features (Sat Jun 07 2008 - 00:15:05 CDT)
  • Re: Individual atoms trajectory (Fri May 16 2008 - 02:08:59 CDT)
  • Re: Individual atoms trajectory (Fri May 16 2008 - 01:08:22 CDT)
  • Energy plot script (Wed May 14 2008 - 22:11:19 CDT)
  • Individual atoms trajectory (Wed May 14 2008 - 00:34:38 CDT)
  • Re: Recompile VMD with larger index types (Sun May 11 2008 - 11:20:47 CDT)
  • Recompile VMD with larger index types (Sat May 10 2008 - 07:36:43 CDT)
  • Atomselect in loops (Fri Nov 24 2006 - 03:50:34 CST)
• Alexandre Suman de Araujo
  • Problems to load Gaussian .log file in Paratool (Mon Jul 30 2007 - 13:05:56 CDT)
  • Molecular Display component (Mon Mar 28 2005 - 10:56:17 CST)
  • Adding Atoms in Colors Menu (Fri Apr 02 2004 - 03:33:52 CST)
• Alexandre Vakhrouchev
  • (no subject) (Wed Nov 19 2003 - 02:11:14 CST)
  • Re: POV-Ray (Wed Nov 12 2003 - 03:33:03 CST)
  • (no subject) (Thu Nov 06 2003 - 06:43:18 CST)
  • VMD and Mandrake Linux 9.1 (Thu Nov 06 2003 - 02:59:04 CST)
• Alexe Bojovschi
  • Small molecules alignment with VMD (Sun Jun 04 2006 - 23:16:47 CDT)
• Alexei Podtelezhnikov
  • RE: dihedral angles cleaned up (Fri Aug 05 2005 - 17:47:13 CDT)
  • dihedral angles cleaned up! (Thu Aug 04 2005 - 11:19:31 CDT)
  • dihedral angles cleaned up (Thu Aug 04 2005 - 10:09:38 CDT)
• Alexey Kozlenkov
  • python disabled (Wed Jan 30 2002 - 14:53:54 CST)
  • 3 simple questions from a newbie (Mon Jul 23 2001 - 07:01:43 CDT)
• Alexis Salas
  • problem with DPPC topology (Tue Mar 08 2005 - 14:29:43 CST)
  • Activation energy (Thu Aug 19 2004 - 13:33:36 CDT)
  • Solvating with TIP4 or SPC (Tue Aug 03 2004 - 16:01:03 CDT)
  • TIP3 by TIP4 (Tue Aug 03 2004 - 13:57:40 CDT)
  • How i can changue the charge of my protein (Mon Aug 02 2004 - 13:13:06 CDT)
• Alfredo Valles
  • Re: Python's future in VMD (Tue Sep 30 2003 - 08:01:05 CDT)
  • python question 2 (Mon Aug 25 2003 - 04:02:10 CDT)
  • python question (Sat Aug 23 2003 - 09:41:37 CDT)
  • hi (Sat Aug 23 2003 - 06:15:08 CDT)
• Ali Deyhim
  • Re: free sample!!! (Wed May 09 2001 - 10:35:13 CDT)
• Alicia Hopkins
  • measuring h-bonds (Sun Sep 19 2004 - 08:42:12 CDT)
  • measuring h-bonds (Thu Sep 16 2004 - 09:24:33 CDT)
  • measuring h-bond distances (Sat Sep 11 2004 - 12:01:58 CDT)
• Alison Grinthal
  • plotting on Mac (Fri Aug 10 2007 - 14:50:11 CDT)
  • overlay (Tue May 29 2007 - 15:58:18 CDT)
  • overlay (Mon May 28 2007 - 06:45:38 CDT)
• Althea Lake
  • You and a Rolex watch (Tue Apr 15 2008 - 17:12:00 CDT)
• Amadeu
  • Re: povray problem: degenerate cylinder (Fri May 05 2006 - 09:48:43 CDT)
  • povray problem: degenerate cylinder (Fri May 05 2006 - 07:09:51 CDT)
• Amarda Shehu
  • Re: how to reset a timed out connection (Tue Apr 24 2007 - 13:55:24 CDT)
  • how to reset a timed out connection (Tue Apr 24 2007 - 09:23:44 CDT)
  • Re: Best fit plane axis (Fri Dec 08 2006 - 14:21:19 CST)
  • special instructions in psfgen for circular proteins? (Thu Mar 30 2006 - 16:50:02 CST)
  • understanding NOE restraints (Mon May 02 2005 - 18:56:34 CDT)
  • criteria for detecting hydrogen bonds (Sun Apr 17 2005 - 18:14:21 CDT)
  • handling electron density maps (.mrc and .map files) (Sat Dec 18 2004 - 15:29:30 CST)
  • outputing xyz coordinates of selection (Sat Oct 23 2004 - 14:58:21 CDT)
  • Re: superimposing frames (Wed Sep 22 2004 - 12:16:56 CDT)
  • superimposing frames (Wed Sep 22 2004 - 10:51:57 CDT)
• Amaury Pupo Meriño
  • saltbr plugging problem: too many open files (Fri Dec 21 2007 - 09:31:07 CST)
• Amit
  • Small molecules (Fri Oct 12 2007 - 18:02:51 CDT)
• amit dong
  • glycerol box (Thu Jun 28 2007 - 11:14:12 CDT)
  • H-bonds (Tue Apr 24 2007 - 10:58:13 CDT)
  • contact map (over all frames) (Fri Apr 13 2007 - 15:53:24 CDT)
  • H-bond energy (Thu Jan 18 2007 - 18:13:11 CST)
• Amit Paliwal
  • dcd to coor files (Fri May 14 2004 - 15:18:26 CDT)
  • Re: trouble loading dcd files (Sun May 09 2004 - 09:48:37 CDT)
  • Re: RE: trouble loading dcd files (Sun May 09 2004 - 09:53:07 CDT)
  • trouble loading dcd files (Sat May 08 2004 - 23:43:13 CDT)
• amit_at_mbu.iisc.ernet.in
  • Dynamic selection of residues on a trajectory (Tue Nov 07 2006 - 11:07:13 CST)
  • Dynamic selection of residues on a trajectory (Tue Nov 07 2006 - 10:45:19 CST)
  • Selection of residues in a trajectory (Tue Oct 31 2006 - 13:50:23 CST)
• amodzelewska_at_dns.iimcb.gov.pl
  • autoionize script (Sun May 16 2004 - 13:21:58 CDT)
• amodzelewska_at_iimcb.gov.pl
  • Re: error when solvating protein/vmd1.8.4a22 (Tue Nov 08 2005 - 08:44:30 CST)
• Amrit Kalra
  • Viewing Amber6 trajectory with VMD 1.8.1 (Mon Oct 20 2003 - 01:21:03 CDT)
• Ana Celia Araujo Vila Verde
  • RE: tcl variable withing variable name (Thu Apr 19 2007 - 10:29:43 CDT)
  • RE: Calculate End-End distance for DCD (Tue Mar 13 2007 - 16:17:48 CDT)
  • RE: Delete frames in a script (Tue Jan 30 2007 - 10:08:50 CST)
  • RE: rotation to align (Fri Jan 19 2007 - 07:59:55 CST)
  • script to load dcds from Replica Exchange simulations by Temperature (Mon Jan 15 2007 - 17:30:44 CST)
  • RE: imposing period boundary conditions in a simulation with a crystal (Wed Sep 06 2006 - 08:31:59 CDT)
  • imposing period boundary conditions in a simulation with a crystal (Tue Sep 05 2006 - 11:13:06 CDT)
  • Re: problem with measure command (Fri Jun 23 2006 - 11:02:14 CDT)
  • problem with measure command (Fri Jun 23 2006 - 10:22:49 CDT)
  • the crystal structure of gold: questions about making the psf and about visualization in VMD; update (Tue May 23 2006 - 14:47:00 CDT)
  • the crystal structure of gold: questions about making the psf and about visualization in VMD (Tue May 23 2006 - 11:36:54 CDT)
  • RE: problem with script to get RMSD-solved (Tue Feb 21 2006 - 10:53:16 CST)
  • RE: problem with script to get RMSD (Fri Feb 17 2006 - 14:10:10 CST)
  • RE: problem with script to get RMSD (Fri Feb 17 2006 - 08:41:20 CST)
  • RE: problem with script to get RMSD (Thu Feb 16 2006 - 15:49:23 CST)
  • problem with script to get RMSD (Thu Feb 16 2006 - 13:31:28 CST)
  • RE: printing to a file from a procedure to get RMSD (Thu Feb 02 2006 - 08:35:30 CST)
  • printing to a file from a procedure to get RMSD (Tue Jan 31 2006 - 10:28:37 CST)
  • psfgen error: MOLECULE DESTROYED BY FATAL ERROR (Tue Nov 22 2005 - 13:13:15 CST)
• Ana Celia Vila Verde
  • RE: a question about dcd files (Thu Feb 02 2006 - 08:32:35 CST)
  • a question about dcd files (Wed Feb 01 2006 - 13:53:39 CST)
• Ana Vila Verde
  • Re: measure hbonds between protein and water - problem with periodic boundary conditions (Thu Apr 17 2008 - 05:54:50 CDT)
  • measure hbonds between protein and water - problem with periodic boundary conditions (Thu Apr 17 2008 - 02:54:08 CDT)
• Anand Kaushal
  • python callback!!!! (Wed Jul 28 2004 - 16:19:15 CDT)
• Anatoliy
  • question about ionization (Wed Nov 07 2007 - 12:10:12 CST)
  • question about water sphere script (Mon Nov 05 2007 - 11:21:54 CST)
• andras.borosy_at_givaudan.com
  • unique opportunity - 20% discount for the EuroQSAR 2006 (Tue Aug 15 2006 - 10:54:04 CDT)
  • Periodic builder? (Tue Aug 08 2006 - 07:26:51 CDT)
• Andre Farias de Moura
  • Re: mpg image speed (Mon Apr 11 2005 - 09:40:46 CDT)
  • drawing the edges of a non-rectangular box (Fri Mar 11 2005 - 06:17:46 CST)
  • center of mass position (Tue Aug 24 2004 - 07:07:24 CDT)
• Andrea Bernini
  • H-bonds? (Wed Mar 05 1997 - 06:36:47 CST)
• Andrea Carotti
  • SAS values for a residue (Wed Jul 27 2005 - 07:58:45 CDT)
  • Re: Script for automated selection (Wed Jun 22 2005 - 03:28:54 CDT)
  • Script for automated selection (Mon Jun 20 2005 - 09:38:51 CDT)
• Andrea Cristiani
  • Fixed number of solvatation water (Wed Apr 25 2007 - 04:56:41 CDT)
• andrea spitaleri
  • Re: silly rmsd script doesn' t work ... (Fri May 30 2008 - 08:28:40 CDT)
  • silly rmsd script doesn' t work ... (Fri May 30 2008 - 07:17:16 CDT)
  • Re: resolution screen in Linux (Mon Apr 28 2008 - 02:54:15 CDT)
  • resolution screen in Linux (Thu Apr 24 2008 - 07:33:24 CDT)
  • color by frame? (Mon May 07 2007 - 04:58:40 CDT)
  • rmsf (Tue Sep 19 2006 - 10:40:15 CDT)
  • select only border of the water box (Fri Aug 04 2006 - 04:41:00 CDT)
  • Re: number of frames in pdb file? (Fri May 26 2006 - 03:01:41 CDT)
  • rms and align strucs (Wed Apr 19 2006 - 06:05:50 CDT)
  • contact map lig-pro (Wed Apr 19 2006 - 05:37:23 CDT)
  • Re: dict command (Thu Apr 06 2006 - 02:43:21 CDT)
  • dict command (Wed Apr 05 2006 - 09:44:50 CDT)
  • find neighbour ligand-protein (Thu Mar 23 2006 - 08:53:40 CST)
  • Re: VMD script (Tue Mar 14 2006 - 05:05:00 CST)
  • Re: VMD script (Mon Mar 13 2006 - 04:19:55 CST)
  • Re: tcl-reading files (Mon Feb 13 2006 - 08:42:49 CST)
  • Re: vmd installation on the server (Tue Jan 31 2006 - 03:25:19 CST)
  • vmd installation on the server (Mon Jan 30 2006 - 09:31:46 CST)
  • contact map [Re: vmd-xplor and noe call ] (Thu Dec 15 2005 - 10:13:30 CST)
  • vmd-xplor and noe call (Thu Dec 15 2005 - 05:16:58 CST)
  • discriminate aromatic ring face (Mon Dec 05 2005 - 09:54:38 CST)
  • Re: s-s bond in vmd not visualized (Mon Dec 05 2005 - 03:24:16 CST)
  • Re: s-s bond in vmd not visualized (Tue Nov 29 2005 - 03:22:52 CST)
  • Re: s-s bond in vmd not visualized (Wed Nov 23 2005 - 03:05:39 CST)
  • s-s bond in vmd not visualized (Tue Nov 22 2005 - 07:03:52 CST)
  • Re: calculate rmsd in a loop:feedback [sorry if you get it twice] (Fri Nov 18 2005 - 10:16:01 CST)
  • Re: calculate rmsd in a loop:feedback [sorry if you get it twice] (Fri Nov 18 2005 - 05:31:21 CST)
  • Re: calculate rmsd in a loop:feedback [sorry if you get it twice] (Fri Nov 18 2005 - 03:42:29 CST)
  • Re: Réf. : calculate rmsd in a loop:feedback [sorry if you get it twice] (Thu Nov 17 2005 - 04:14:01 CST)
  • calculate rmsd in a loop:feedback [sorry if you get it twice] (Thu Nov 17 2005 - 02:50:19 CST)
  • increase size membrane (Fri Nov 04 2005 - 02:58:43 CST)
  • Re: position of protein respect to membrane (Tue Sep 27 2005 - 04:00:31 CDT)
  • Re: position of protein respect to membrane (Tue Sep 27 2005 - 03:41:35 CDT)
  • position of protein respect to membrane (Mon Sep 26 2005 - 09:35:10 CDT)
• Andrea.Cristiani_at_pharm.unige.ch
  • Create a PSF (Fri Sep 21 2007 - 04:16:37 CDT)
• Andrei A Golosov
  • Re: electrostatic potential maps in vmd (Fri Mar 10 2006 - 12:17:50 CST)
  • electrostatic potential maps in vmd (Fri Mar 10 2006 - 10:52:14 CST)
• Andres Bynum
  • Your Pharm4cy 0rder #3747312 (Sat Apr 21 2007 - 19:50:21 CDT)
• Andres Palencia
  • Re: duration of video mpeg (Mon Dec 04 2006 - 06:12:51 CST)
  • Re: duration of video mpeg (Sun Dec 03 2006 - 13:07:28 CST)
  • duration of video mpeg (Sat Dec 02 2006 - 11:39:04 CST)
  • VMD installation problem (Fri Nov 10 2006 - 10:38:41 CST)
• Andrew Dalke
  • Re: translations with fixed and unfixed molecules (Thu Apr 15 1999 - 23:18:33 CDT)
  • Re: moving molecules and getting the new positions (Tue Mar 30 1999 - 18:50:35 CST)
  • Re: questions about MSMS and H-bonds (Fri Mar 05 1999 - 15:04:39 CST)
  • Re: questions about MSMS and H-bonds (Fri Mar 05 1999 - 14:54:07 CST)
  • Re: extracting distances (Thu Dec 10 1998 - 20:06:25 CST)
  • convex hull and VMD (Mon Sep 28 1998 - 17:31:10 CDT)
  • Re: Transparent graphics (Fri Sep 18 1998 - 12:32:30 CDT)
  • Re: VMDTECH: CONECTing atoms (Mon Aug 24 1998 - 15:01:05 CDT)
  • Re: calculation of RMS values (Wed Aug 19 1998 - 13:49:12 CDT)
  • VMDTECH: CONECTing atoms (Fri Aug 14 1998 - 17:16:26 CDT)
  • Re: The pdb format of vmd (Thu Jan 22 1998 - 12:02:32 CST)
  • protein surface and volume code (Wed Jan 14 1998 - 22:17:10 CST)
  • Re: VMD on a DEC? (Wed Jan 14 1998 - 22:07:30 CST)
  • Re: problem with getting started. (Sun Dec 21 1997 - 11:47:00 CST)
  • Re: unable to animate alanine.dcd (Mon Dec 08 1997 - 13:34:06 CST)
  • Re: unable to animate alanine.dcd (Sun Dec 07 1997 - 23:16:55 CST)
  • Re: tcl script for writinging modified pdb co-ordinates (Thu Dec 04 1997 - 18:41:03 CST)
  • Re: drawing spheres (Wed Nov 19 1997 - 08:03:35 CST)
  • Re: VMD only read 58 frames from XYZ file (Thu Nov 06 1997 - 04:24:54 CST)
  • Re: MSMS in VMD (Wed Oct 15 1997 - 00:30:42 CDT)
  • Re: VMD & PoV files (Wed Oct 08 1997 - 12:12:54 CDT)
  • Re: reading minimalised pdb files (Tue Oct 07 1997 - 04:34:33 CDT)
  • Exporting VMD images to Alias (Thu Jul 24 1997 - 14:28:40 CDT)
  • residue-residue distances and atom selection bug (Tue Jun 10 1997 - 13:05:11 CDT)
  • [VMDTECH] Schedule Change (Fri Apr 18 1997 - 18:07:35 CDT)
  • [VMDTECH] Smoothing Animations (Sun Apr 13 1997 - 01:28:43 CDT)
  • Re: Segmentation error! (Wed Apr 09 1997 - 10:46:36 CDT)
  • [VMDTECH] Tracing Atom Picks (Fri Apr 04 1997 - 18:27:57 CST)
  • [VMDTECH] Morphing (Fri Mar 28 1997 - 12:14:17 CST)
  • Two (small) VMD 1.2b1 bugs (Wed Mar 26 1997 - 13:55:16 CST)
  • Re: [VMDTECH] VMD 1.2b1 is now available (Tue Mar 25 1997 - 03:03:32 CST)
  • [VMDTECH] VMD 1.2b1 is now available (Tue Mar 25 1997 - 02:09:57 CST)
  • [VMDTECH] Drawing Methods, Part II (Fri Mar 14 1997 - 16:40:47 CST)
  • Re: Wavefront obj output (Wed Mar 12 1997 - 15:19:48 CST)
  • [VMDTECH] Drawing Methods, Part I (Fri Mar 07 1997 - 16:22:57 CST)
  • VMD now uses Tcl 7.6 (Wed Mar 05 1997 - 22:47:42 CST)
  • Re: why does VMD quit automatically? (Wed Mar 05 1997 - 11:50:27 CST)
  • Re: H-bonds? (Wed Mar 05 1997 - 09:37:55 CST)
  • Re: why does VMD quit automatically? (Wed Mar 05 1997 - 08:58:34 CST)
  • [VMDTECH] Secondary Structure (Fri Feb 28 1997 - 16:38:21 CST)
  • [VMDTECH] Small things (Fri Feb 21 1997 - 13:02:34 CST)
  • VMD workshop material (Tue Feb 18 1997 - 17:43:13 CST)
  • [VMDTECH] Making Movies (Fri Feb 14 1997 - 12:56:27 CST)
  • [VMDTECH] RMSD and best-fit alignments (Fri Feb 07 1997 - 14:37:24 CST)
  • [Tech] Customizing VMD: hot keys and popup menus (Fri Jan 31 1997 - 12:10:02 CST)
  • Re: textures in VMD and rayshade scripts (Mon Jan 27 1997 - 15:42:15 CST)
  • Re: [Tech] Colors in VMD (Fri Jan 24 1997 - 15:24:38 CST)
  • [Tech] Colors in VMD (Fri Jan 24 1997 - 11:44:45 CST)
  • Special Christmas binary (Fri Dec 20 1996 - 04:01:38 CST)
  • Welcome to VMD-L! (Thu Dec 19 1996 - 11:40:38 CST)
  • Re: What's the main reason of the structure or function of a protein? (Thu Mar 06 2008 - 00:25:03 CST)
  • Re: What's the main reason of the structure or function of a protein? (Wed Mar 05 2008 - 16:32:42 CST)
  • Re: VMD languaje information (Tue Mar 04 2008 - 14:44:16 CST)
  • Re: VMD and Cyclotides... (Tue Apr 05 2005 - 02:59:29 CDT)
  • Re: displaying double, triple bonds (Tue Mar 29 2005 - 17:05:33 CST)
  • Re: atom index starting at 0 (Fri Jan 07 2005 - 17:36:50 CST)
  • Re: Tube representation of alpha carbons (Wed Dec 08 2004 - 01:53:05 CST)
  • Re: Tube representation of alpha carbons (Tue Dec 07 2004 - 19:46:58 CST)
  • Re: Elliptic molecules (Thu Jul 15 2004 - 15:35:47 CDT)
  • Re: Van der Waal's radii of atoms (Wed Jun 02 2004 - 23:21:30 CDT)
  • Re: attempting to source a script (Thu Feb 12 2004 - 08:41:46 CST)
  • Re: "nucleic" selection (Wed Nov 12 2003 - 13:29:15 CST)
  • Re: Python's future in VMD (Tue Sep 30 2003 - 12:19:46 CDT)
  • Re: question about selection (Thu Sep 04 2003 - 18:57:00 CDT)
  • Re: simple question (Tue Sep 02 2003 - 19:40:49 CDT)
  • Re: Some improvements for 1.8.2 (Fri Jul 25 2003 - 20:18:57 CDT)
  • Re: selection (Fri Jul 25 2003 - 18:22:25 CDT)
  • Re: conect2psf (Wed Jul 24 2002 - 04:51:04 CDT)
  • conect2psf (Tue Jul 23 2002 - 23:35:06 CDT)
  • Re: Regular Expression problem with $ (Tue Apr 30 2002 - 20:38:10 CDT)
  • Re: Which drawing method is used in the picture? (Tue Apr 09 2002 - 15:04:19 CDT)
  • Re: boolean operators in graphics (Thu Mar 14 2002 - 22:32:38 CST)
  • Re: Superimposing two frames (Tue Oct 30 2001 - 16:12:03 CST)
  • Re: rasmol script (Tue Mar 20 2001 - 22:45:49 CST)
  • Re: Spheres with OpenGL (was Re: linux graphics adapters?) (Sun Jul 16 2000 - 20:54:55 CDT)
  • Re: VMD and GRASP Qu.II (Thu Jun 15 2000 - 04:23:39 CDT)
• Andrew Gormanly
  • RPM spec file (Tue Oct 17 2006 - 08:03:45 CDT)
• Andrew Hall
  • GRASP files (Wed Jun 14 2000 - 10:17:27 CDT)
  • Remote control of VMD on SGI-NT mixture (Wed Apr 26 2000 - 11:11:50 CDT)
  • MSMS help (Mon Apr 03 2000 - 15:04:30 CDT)
• Andrew Huang
  • Bond lengths from PDB and PSF (Mon May 12 2008 - 16:36:18 CDT)
• Andrew Watts
  • (no subject) (Fri Apr 23 2004 - 15:26:37 CDT)
• aneamtu_at_iasi.mednet.ro
  • E-D stereo glasses (Sat Mar 03 2007 - 04:44:51 CST)
• aneesh cna
  • Re: Percentage Helicity calculation in VMD (Fri Feb 01 2008 - 03:18:53 CST)
  • Percentage Helicity calculation in VMD (Thu Jan 31 2008 - 22:54:53 CST)
  • problem with timeline plugin (Fri Jan 25 2008 - 00:12:17 CST)
  • problem with superimposing two proteins (Thu Jan 10 2008 - 05:33:21 CST)
  • Re: Hydrophobicity plots in VMD (Mon Nov 26 2007 - 23:31:43 CST)
  • Re: Hydrophobicity plots in VMD (Mon Nov 26 2007 - 04:09:44 CST)
  • Re: Hydrophobicity plots in VMD (Sat Nov 24 2007 - 22:50:51 CST)
  • Hydrophobicity plots in VMD (Sat Nov 24 2007 - 00:33:38 CST)
  • problem with loading trajectories in timline plugin (Thu Nov 22 2007 - 00:24:00 CST)
  • stride binaries for windows XP OS (Mon Nov 12 2007 - 23:21:34 CST)
  • problem with colouring the surface with electroststic potential (Mon Nov 12 2007 - 23:15:25 CST)
  • problem with timeline plugin (Mon Sep 17 2007 - 05:33:29 CDT)
  • problem regarding timeline (Mon Sep 10 2007 - 10:54:01 CDT)
  • problem regarding stride (Mon Aug 13 2007 - 05:31:32 CDT)
  • problem regarding stride (Mon Aug 13 2007 - 00:58:09 CDT)
• angel
  • Load (Thu Aug 17 2006 - 13:14:06 CDT)
  • Compiling problem (Mon Jun 19 2006 - 14:23:04 CDT)
  • Compilation propblem (Mon Jun 19 2006 - 12:26:52 CDT)
  • Compilation (Wed May 24 2006 - 17:44:39 CDT)
  • Plugin compilation problem (Thu May 18 2006 - 17:41:16 CDT)
  • Plugin compilation (Fri May 12 2006 - 16:19:47 CDT)
  • Compiling problem (Wed Apr 26 2006 - 14:59:31 CDT)
  • Compiling problem (Fri Mar 31 2006 - 15:57:47 CST)
  • Some errors (Mon Mar 27 2006 - 18:51:51 CST)
• Angelo R. Rossi
  • Re:vmd, linux & dri (Tue Feb 13 2001 - 08:20:42 CST)
• angelo vargas
  • vmd customization (Thu Oct 28 2004 - 03:57:25 CDT)
• Anil Kumar
  • VMD movie from XYZ coordinate if file has two type of atoms (Sun Dec 09 2007 - 22:12:58 CST)
  • Re: VMD movie from XYZ coordinate if file has two type of atoms] (Wed Dec 12 2007 - 01:48:06 CST)
  • Re: VMD movie from XYZ coordinate if file has two type of atoms] (Tue Dec 11 2007 - 21:00:58 CST)
  • VMD movie from XYZ coordinate if file has two type of atoms] (Tue Dec 11 2007 - 04:20:07 CST)
  • VMD movie from XYZ coordinate if file has two type of atoms (Mon Dec 10 2007 - 22:43:49 CST)
• Anna Aagaard
  • Which drawing method is used in the picture? (Tue Apr 09 2002 - 14:40:17 CDT)
• Anna Karawajczyk
  • new coordinates (Thu Oct 06 2005 - 02:57:55 CDT)
  • new coordinates (Thu Oct 06 2005 - 02:35:09 CDT)
  • small figures (Fri Aug 19 2005 - 07:47:30 CDT)
• Anna Modzelewska
  • Re: tcl-reading files (Mon Feb 13 2006 - 08:52:19 CST)
  • tcl-reading files (Mon Feb 13 2006 - 07:35:26 CST)
  • Re: secondary structure's display - problem (Thu Jan 12 2006 - 10:21:07 CST)
  • Re: secondary structure's display - problem (Thu Jan 12 2006 - 06:23:56 CST)
  • Re: secondary structure's display - problem (Wed Jan 11 2006 - 09:03:28 CST)
  • secondary structure's display - problem (Tue Jan 10 2006 - 10:29:43 CST)
  • error when solvating protein/vmd1.8.4a22 (Mon Nov 07 2005 - 07:31:59 CST)
  • saving macros (Wed Nov 02 2005 - 05:35:09 CST)
  • Re: autoimd on windows (Wed Jun 22 2005 - 11:51:22 CDT)
  • Re: autoimd on windows (Wed Jun 22 2005 - 05:29:52 CDT)
  • autoimd on windows (Mon Jun 20 2005 - 06:40:29 CDT)
  • autoimd error (Wed Jun 15 2005 - 09:35:01 CDT)
  • Re: problem in autoionize (Thu Sep 30 2004 - 04:18:38 CDT)
  • stereo with GForce video board (Thu Jul 29 2004 - 04:20:31 CDT)
  • periodic box lines (Mon Dec 01 2003 - 06:50:05 CST)
• Annabelle Posey
  • You can save 80% (Thu Apr 17 2008 - 17:58:17 CDT)
• annalisa_at_biotec.tu-dresden.de
  • combine.tcl (Tue Nov 21 2006 - 15:06:50 CST)
• Anneta Tzampazi
  • Inquiry concerning the plugin "Inorganic builder" (Mon Jun 23 2008 - 05:23:46 CDT)
• anshudx_at_indiatimes.com
  • Info regarding residue based CG simulation (Thu May 15 2008 - 13:04:11 CDT)
• Anshul Shah
  • Re: Amber prmtop/inpcrd files (Mon Jul 28 2003 - 17:17:29 CDT)
  • Amber prmtop/inpcrd files (Mon Jul 28 2003 - 15:45:05 CDT)
• Anthony Cruz
  • Re: Analysis (Thu Mar 23 2006 - 14:01:45 CST)
  • Big trr trajectory (Thu Mar 23 2006 - 13:27:17 CST)
  • Re: Analysis (Thu Mar 23 2006 - 10:20:13 CST)
  • Re: Analysis (Mon Mar 20 2006 - 12:33:53 CST)
  • Analysis (Wed Mar 08 2006 - 13:37:21 CST)
  • Re: selection of atoms on INSIDE protein (Mon Mar 06 2006 - 11:26:12 CST)
  • Re: selection of atoms on INSIDE protein (Mon Mar 06 2006 - 10:20:08 CST)
  • representation using COM (Fri Feb 24 2006 - 16:53:27 CST)
  • RMSD or RMSF value (Tue Dec 20 2005 - 13:17:32 CST)
  • Re: APBS plugin (Thu Dec 08 2005 - 14:07:37 CST)
  • APBS plugin (Wed Dec 07 2005 - 14:06:06 CST)
  • Protein volume and cavityes (Wed Dec 07 2005 - 13:01:53 CST)
  • macros and variables (Thu Dec 01 2005 - 15:09:07 CST)
• Anthony Ivetac
  • Re: Labelling Coordinates (not Atoms) (Wed Jun 18 2008 - 21:32:03 CDT)
  • Labelling Coordinates (not Atoms) (Wed Jun 18 2008 - 17:52:09 CDT)
  • Re: Rendering Labels with Tachyon (Thu Apr 24 2008 - 17:43:08 CDT)
  • Re: Rendering Labels with Tachyon (Thu Apr 24 2008 - 11:58:52 CDT)
  • Rendering Labels with Tachyon (Wed Apr 23 2008 - 18:18:33 CDT)
  • PPMTOMPEG Quality (Thu Apr 17 2008 - 14:40:15 CDT)
  • Drawing Vectors (Tue Nov 16 2004 - 08:53:35 CST)
  • Tachyon Internal Rendering (Mon Jul 26 2004 - 08:34:05 CDT)
  • Visualising Helix Dipole Moment (Mon Jul 19 2004 - 05:25:54 CDT)
  • Non-protein Multiple-Frame File (Mon May 24 2004 - 06:44:54 CDT)
• Anthony Samiotakis
  • Ramachandran plot tcl script (Sat Feb 23 2008 - 15:54:50 CST)
• Anton B. Guliaev
  • Potential map display in VMD (GRASP) (Wed Sep 28 2005 - 18:33:59 CDT)
• Anuradha Mittal
  • Re: RMSD (Wed Apr 12 2006 - 09:24:45 CDT)
  • RMSD (Tue Apr 11 2006 - 13:47:06 CDT)
  • solvation (Wed Mar 22 2006 - 17:38:38 CST)
  • contact map (Wed Jun 01 2005 - 14:56:06 CDT)
  • hbond (Mon Apr 11 2005 - 12:24:05 CDT)
  • rmsd (Tue Apr 05 2005 - 11:24:28 CDT)
• apeyser_at_newssun.med.miami.edu
  • Re: User colors and povray (Wed Feb 23 2005 - 15:45:26 CST)
  • User colors and povray (Tue Feb 22 2005 - 13:34:47 CST)
  • vmd on ppc (G4) (Mon Feb 23 2004 - 14:07:25 CST)
  • Compiling vmd for ppc linux (Fri Feb 20 2004 - 13:46:50 CST)
  • Compiling vmd for ppc linux (Fri Feb 20 2004 - 13:55:41 CST)
• Arent, Michael
  • Some newbie questions (Fri Apr 20 2001 - 08:44:27 CDT)
• Arieana Moore
  • problems with Autoimd on mac os x ( panther ) (Thu Apr 29 2004 - 19:02:09 CDT)
• Ariel Mitchell
  • The affordable watch alternative (Fri May 02 2008 - 20:35:12 CDT)
• Arienti, Marco UTRC
  • more on lammps and VMD coordinates (Tue Feb 26 2008 - 11:18:37 CST)
• Arindam Ganguly
  • Replica exchange molecular dynamics (REMD) (Tue Mar 20 2007 - 21:22:15 CDT)
  • Re: making movie from GROMACS trajectory (Thu Aug 17 2006 - 15:43:43 CDT)
  • making movie from GROMACS trajectory (Wed Aug 09 2006 - 18:05:36 CDT)
• Armen Nalian
  • Re: custom db in Multiseq (Fri May 18 2007 - 12:29:41 CDT)
  • custom db in Multiseq (Thu May 17 2007 - 18:48:01 CDT)
  • RE: trouble with autopsf (Mon Oct 24 2005 - 16:56:41 CDT)
  • RE: trouble with autopsf (Sun Oct 23 2005 - 23:36:09 CDT)
  • APBS error (Wed Feb 16 2005 - 18:58:54 CST)
• Arnab Chakrabarty
  • Re: Unable to see VDW , CPK representations (Sat Feb 16 2008 - 17:51:04 CST)
  • Unable to see VDW , CPK representations (Fri Feb 15 2008 - 16:25:23 CST)
• Arnab Mukherjee
  • Re: vmd crashes on startup (Fri Jul 06 2007 - 15:24:42 CDT)
  • vmd crashes on startup (Wed Jul 04 2007 - 16:11:36 CDT)
• Arneh Babakhani
  • Re: Calculating the Tilt Angle of a non-helical peptide (Wed Mar 19 2008 - 21:37:45 CDT)
  • Calculating the Tilt Angle of a non-helical peptide (Wed Mar 19 2008 - 20:24:38 CDT)
  • Re: Render Snapshot from the Tcl console (jpg gif format) (Sun Dec 02 2007 - 23:24:35 CST)
  • Re: Render Snapshot from the Tcl console (jpg gif format) (Sun Dec 02 2007 - 20:57:41 CST)
  • Re: Render Snapshot from the Tcl console (jpg gif format) (Sun Dec 02 2007 - 20:45:38 CST)
  • Re: Render Snapshot from the Tcl console (jpg gif format) (Sun Dec 02 2007 - 18:31:17 CST)
  • Render Snapshot from the Tcl console (jpg gif format) (Sun Dec 02 2007 - 15:02:52 CST)
  • Re: peptide builder (Fri Sep 07 2007 - 10:50:23 CDT)
  • Re: Changing the Index values of a molecule (the differenece between gro and pdb files) (Wed Aug 15 2007 - 13:06:17 CDT)
  • Changing the Index values of a molecule (the differenece between gro and pdb files) (Wed Aug 15 2007 - 12:39:08 CDT)
  • Running a vmd tcl script in the background (Mon Aug 13 2007 - 19:05:20 CDT)
  • Re: Deleting bonds based on length (Fri Jul 27 2007 - 07:58:41 CDT)
  • Deleting bonds based on length (Thu Jul 26 2007 - 23:41:11 CDT)
  • Recognized atom types by VMD PDB reader (Fri Jul 20 2007 - 12:52:48 CDT)
  • Re: Reading a pdbqt file (generated from AutoDock) (Fri Jul 20 2007 - 12:35:24 CDT)
  • Re: Reading a pdbqt file (generated from AutoDock) (Fri Jul 20 2007 - 09:19:00 CDT)
  • Reading a pdbqt file (generated from AutoDock) (Thu Jul 19 2007 - 18:01:01 CDT)
  • Re: Making a selection from another selection (Tue Jul 17 2007 - 20:41:29 CDT)
  • Re: Making a selection from another selection (Tue Jul 17 2007 - 20:35:19 CDT)
  • Making a selection from another selection (Tue Jul 17 2007 - 20:02:49 CDT)
  • Re: Divide by Zero Error , but can't find the zero! (Thu Jul 05 2007 - 20:03:45 CDT)
  • Divide by Zero Error , but can't find the zero! (Thu Jul 05 2007 - 14:57:03 CDT)
  • Re: Using VMD just to plot some coordinates from a mathematical/geometrical model (Sat Jun 23 2007 - 10:29:11 CDT)
  • Re: Using VMD just to plot some coordinates from a mathematical/geometrical model (Fri Jun 22 2007 - 20:04:40 CDT)
  • Using VMD just to plot some coordinates from a mathematical/geometrical model (Fri Jun 22 2007 - 17:51:35 CDT)
  • Re: Loading up PDB files in absolute coordinates (Fri Jun 22 2007 - 15:04:24 CDT)
  • Re: Loading up PDB files in absolute coordinates (Fri Jun 22 2007 - 14:38:42 CDT)
  • Re: Loading up PDB files in absolute coordinates (Fri Jun 22 2007 - 14:26:12 CDT)
  • Re: Loading up PDB files in absolute coordinates (Fri Jun 22 2007 - 13:50:59 CDT)
  • Loading up PDB files in absolute coordinates (Fri Jun 22 2007 - 13:10:06 CDT)
  • Re: Measuring hbonds between selections from different molecules (Tue Jun 05 2007 - 20:57:11 CDT)
  • Measuring hbonds between selections from different molecules (Tue Jun 05 2007 - 20:13:15 CDT)
  • Move labels (Wed May 23 2007 - 16:21:33 CDT)
  • Re: Error while running scripts: terminate called after throwing an instance of 'std::bad_alloc' (Mon Feb 05 2007 - 10:59:04 CST)
  • Re: Error while running scripts: terminate called after throwing an instance of 'std::bad_alloc' (Sun Feb 04 2007 - 21:58:19 CST)
  • Re: Error while running scripts: terminate called after throwing an instance of 'std::bad_alloc' (Fri Feb 02 2007 - 20:04:29 CST)
  • Error while running scripts: terminate called after throwing an instance of 'std::bad_alloc' (Fri Feb 02 2007 - 16:16:04 CST)
  • Re: Segmentation fault when trying to load GROMACS trajectories (Mon Jun 12 2006 - 14:10:19 CDT)
  • Segmentation fault when trying to load GROMACS trajectories (Mon Jun 12 2006 - 11:47:06 CDT)
  • Re: Launching Tk Console (Wed May 10 2006 - 19:00:57 CDT)
  • Launching Tk Console (Wed May 10 2006 - 11:23:42 CDT)
  • Secondary Structure along a trajectory (Wed Apr 26 2006 - 18:44:21 CDT)
• Artem Mamonov
  • Memory leak using "moveby" command inside a loop (Wed Apr 14 2004 - 21:34:20 CDT)
• Arturas
  • solid color clipping plane - render with "scratches" (Tue Oct 25 2005 - 04:49:45 CDT)
  • VMD shows bad structure with 'line' type (Fri Apr 02 2004 - 06:27:38 CST)
  • Re: configure do nothing in Linux (???) - thank you ! (Thu Apr 01 2004 - 03:23:39 CST)
  • configure do nothing (Linux) (Wed Mar 31 2004 - 09:22:54 CST)
  • configure do nothing in Linux(???) (Wed Mar 31 2004 - 09:27:36 CST)
• Arturas Ziemys
  • Fast routines for distance evaluations using PBC. (Fri May 11 2007 - 11:52:49 CDT)
  • polyethylene topology (Tue Dec 05 2006 - 12:05:57 CST)
  • gofr (Wed Oct 11 2006 - 13:22:54 CDT)
  • Recentering the box on target molecule and wraping (Mon Sep 11 2006 - 10:39:55 CDT)
  • charmm toppology : internal coordinates (Tue Aug 22 2006 - 16:39:00 CDT)
  • Manipulation on loaded MSMS surface (Tue Aug 15 2006 - 16:19:18 CDT)
  • loading trajectory file (Mon Aug 07 2006 - 11:38:34 CDT)
• Arturo Fernandez
  • You can save 80% (Fri Apr 25 2008 - 05:58:21 CDT)
• Arun Krishnan
  • Re: Changing Beta values for each frame of a trajectory.. (Wed Jun 20 2007 - 23:39:21 CDT)
  • Changing Beta values for each frame of a trajectory.. (Wed Jun 20 2007 - 22:08:17 CDT)
• asimplefunguy_at_netscape.net
  • nvidia drivers and 64bit OS VMD/PYMOL (Mon Oct 24 2005 - 09:10:23 CDT)
• Assa Sittner
  • viewing .brix maps (Sun Mar 13 2005 - 04:58:03 CST)
• Atila Iamarino
  • removing water molecules (Mon Jun 04 2007 - 13:21:33 CDT)
  • Re: Saving mol2 file (Wed Apr 18 2007 - 10:50:57 CDT)
  • Saving mol2 file (Mon Apr 16 2007 - 12:36:00 CDT)
• Audrey Salazar
  • Questions abt VMD plugins (Fri Sep 14 2007 - 08:59:48 CDT)
  • Re: Installing VMD to work with MSMS (Tue Aug 14 2007 - 13:42:35 CDT)
  • Installing VMD to work with MSMS (Tue Aug 14 2007 - 11:07:38 CDT)
  • Archived Spam in the VMD-L Mailing List (Tue Aug 14 2007 - 10:00:30 CDT)
  • Re: Automatic PSF Builder Help (Mon Aug 06 2007 - 14:47:08 CDT)
  • Re: Automatic PSF Builder Help (Mon Aug 06 2007 - 14:27:52 CDT)
  • Automatic PSF Builder Help (Mon Aug 06 2007 - 11:16:12 CDT)
• Aurelie.DeLuca_at_sanofi-aventis.com
  • RMSD between two structures without the same number of atoms (Fri Apr 18 2008 - 08:08:39 CDT)
• Aurore Zyto
  • Cartoon representation for large molecules (Wed Dec 31 2003 - 15:43:11 CST)
• Austin Small
  • RE: Can't execvp vmd_SOLARISX86 (Tue Sep 25 2007 - 16:14:16 CDT)
  • Can't execvp vmd_SOLARISX86 (Sun Sep 23 2007 - 23:42:50 CDT)
  • vmdbasename: Undefined variable (Sat Sep 08 2007 - 12:13:41 CDT)
• AustinSmall_at_comcast.net
  • VMD plugin error src/webpdbplugin.c (Sun Aug 12 2007 - 18:08:17 CDT)
  • Re: gmake invalid option --c install (Sat Aug 11 2007 - 12:52:32 CDT)
  • gmake invalid option --c install (Sat Aug 11 2007 - 10:47:45 CDT)
  • VMD plugins error (Mon Aug 06 2007 - 22:18:52 CDT)
  • (no subject) (Thu Jul 26 2007 - 16:06:23 CDT)
  • installation errors with src/hesstrans_wrap.C (Thu Jul 26 2007 - 16:16:39 CDT)
• Avell Diroll
  • Re: Hydrophobicity plots in VMD (Tue Nov 27 2007 - 03:22:21 CST)
  • Re: Moving volume data with molecule (Thu Mar 29 2007 - 11:59:01 CDT)
  • Moving volume data with molecule (Thu Mar 29 2007 - 10:05:40 CDT)
  • Re: read the pdb file using VMD (Wed Mar 07 2007 - 17:39:38 CST)
  • Re: Isosurface rendering (Thu Feb 22 2007 - 08:11:28 CST)
  • Re: Isosurface rendering (Wed Feb 21 2007 - 06:42:05 CST)
  • Isosurface rendering (Tue Feb 20 2007 - 08:52:35 CST)
• Axel Berg
  • questions about MSMS and H-bonds (Fri Mar 05 1999 - 06:38:48 CST)
  • MSMS in VMD (Tue Oct 14 1997 - 07:58:11 CDT)
• Axel Kohlmeyer
  • Re: Dihedrale angles in VMD (Thu Jul 03 2008 - 12:24:16 CDT)
  • Re: Loading Problem (Thu Jul 03 2008 - 12:28:18 CDT)
  • Re: The maximal size which can be displayed by VMD? (Wed Jul 02 2008 - 16:36:57 CDT)
  • Re: VMDMODULATERIBBON or sausage representation (Tue Jul 01 2008 - 14:07:42 CDT)
  • Re: Mac OSX crash with bus error/segmentation fault upon loading pdb/dcd (Mon Jun 30 2008 - 13:17:20 CDT)
  • Re: Error using namdstat.tcl script (Mon Jun 30 2008 - 11:42:26 CDT)
  • Re: Problem of Movie Maker Plugin (Sat Jun 28 2008 - 11:19:02 CDT)
  • Re: how to make a movie of 2 or more trajectories (Fri Jun 27 2008 - 20:57:18 CDT)
  • Re: mutate by D-residues... (Fri Jun 27 2008 - 20:47:58 CDT)
  • Re: select cylindrical slab (Fri Jun 27 2008 - 12:51:26 CDT)
  • Re: Compiling from source on Mac OS X 10.5 (Fri Jun 27 2008 - 14:23:44 CDT)
  • Re: Compiling from source on Mac OS X 10.5 (Fri Jun 27 2008 - 13:54:36 CDT)
  • Re: vmd shuts itself down (Fri Jun 27 2008 - 09:23:12 CDT)
  • Re: How to delete anwanted waters in a special area ? (Wed Jun 25 2008 - 11:51:29 CDT)
  • Re: How to visualize iron and chlorine properly. (Mon Jun 23 2008 - 10:13:41 CDT)
  • Re: Re: Re: PSF works in NAMD but not in VMD (Mon Jun 23 2008 - 10:18:33 CDT)
  • Re: Inquiry concerning the plugin "Inorganic builder" (Mon Jun 23 2008 - 10:11:04 CDT)
  • Re: how to export into postscript with MultiPlot in tcl mode? (Mon Jun 23 2008 - 10:03:21 CDT)
  • Re: Re: PSF works in NAMD but not in VMD (Fri Jun 20 2008 - 09:57:37 CDT)
  • Re: displaying hydrogen bonds when hydrogens are not available (Thu Jun 19 2008 - 09:31:53 CDT)
  • Re: About occupancy volume maps (Thu Jun 19 2008 - 05:20:24 CDT)
  • Re: Labelling Coordinates (not Atoms) (Wed Jun 18 2008 - 18:43:57 CDT)
  • Re: render "color by volume" (Tue Jun 17 2008 - 18:34:28 CDT)
  • Re: specify a rtf file when generating a psf file. (Tue Jun 17 2008 - 14:50:55 CDT)
  • Re: render "color by volume" (Tue Jun 17 2008 - 14:51:28 CDT)
  • Re: opening gromacs .gro file gives warning messsage and does not display the molecule (Tue Jun 17 2008 - 09:11:03 CDT)
  • Re: Question: Too many arguments (Mon Jun 16 2008 - 09:45:36 CDT)
  • Re: User defined charges with PMEpot (Fri Jun 13 2008 - 07:34:42 CDT)
  • Re: User defined charges with PMEpot (Thu Jun 12 2008 - 22:24:15 CDT)
  • Re: problem loading trajectory in VMD under windows XP (Tue Jun 10 2008 - 20:21:24 CDT)
  • Re: IED on MacOSX 10.3.9 (Tue Jun 10 2008 - 07:03:30 CDT)
  • Re: Image rendering using pov-ray (Mon Jun 09 2008 - 21:34:57 CDT)
  • Re: Image rendering using pov-ray (Mon Jun 09 2008 - 21:30:35 CDT)
  • Re: Dipole moment? (Sat Jun 07 2008 - 12:47:19 CDT)
  • Re: Total list of Tcl features (Sat Jun 07 2008 - 09:41:05 CDT)
  • Re: Total list of Tcl features (Sat Jun 07 2008 - 10:21:27 CDT)
  • Re: Solvation (Fri Jun 06 2008 - 09:04:27 CDT)
  • Re: Long file paths in Mac OS 10.5.3 (Wed Jun 04 2008 - 16:17:25 CDT)
  • Re: Create atom selection from list of integers (Mon Jun 02 2008 - 11:08:16 CDT)
  • Re: silly rmsd script doesn' t work ... (Fri May 30 2008 - 07:49:45 CDT)
  • Re: Exceeded maximum number of bonds (Thu May 29 2008 - 13:54:24 CDT)
  • Re: [lammps-users] MDAnalysis (slightly OT) (Tue May 27 2008 - 12:54:41 CDT)
  • Re: IMD per TCL (Tue May 27 2008 - 04:39:51 CDT)
  • Re: Label on Movie (Mon May 26 2008 - 14:06:52 CDT)
  • Re: Label on Movie (Mon May 26 2008 - 12:02:08 CDT)
  • Re: mass weighted rms fit (Sun May 25 2008 - 11:20:56 CDT)
  • Re: How to discard certain atoms (Sun May 25 2008 - 07:59:23 CDT)
  • Re: Measure gofr with large DCD files (Possibly use bigdcd ???) (Fri May 23 2008 - 18:59:33 CDT)
  • Re: Movies using Cygwin's ImageMagick? (Thu May 22 2008 - 09:33:30 CDT)
  • Re: Crystal water (Thu May 22 2008 - 05:23:24 CDT)
  • Re: scale trajectory coords (Wed May 21 2008 - 22:58:01 CDT)
  • Re: your mail (Wed May 21 2008 - 09:17:12 CDT)
  • Re: Using NAMD Energy Plugin (Tue May 20 2008 - 07:42:39 CDT)
  • Re: plot residues without hydrogen atoms (Tue May 20 2008 - 07:40:19 CDT)
  • Re: Color of bond betwen atoms with different colors (Fri May 16 2008 - 16:35:50 CDT)
  • Re: Slow tcl/tk script for trajectory analysis (Fri May 16 2008 - 14:46:11 CDT)
  • Re: Draw in a new layer problems (Fri May 16 2008 - 10:48:12 CDT)
  • Re: membrane builder (Tue May 13 2008 - 17:31:47 CDT)
  • Re: Bond lengths from PDB and PSF (Mon May 12 2008 - 17:32:55 CDT)
  • Re: 'within' command in VMD (Sun May 11 2008 - 13:22:18 CDT)
  • Re: Recompile VMD with larger index types (Sun May 11 2008 - 11:18:17 CDT)
  • Re: 'within' command in VMD (Sun May 11 2008 - 03:35:53 CDT)
  • Re: Recompile VMD with larger index types (Sat May 10 2008 - 10:19:36 CDT)
  • bigdcd v2.0 testers needed... (Wed May 07 2008 - 15:21:47 CDT)
  • Re: Writepdb with Solvation Box (Tue May 06 2008 - 13:25:34 CDT)
  • Re: memorry problem (Fri May 02 2008 - 15:04:02 CDT)
  • Re: problem using pbc wrap (Tue Apr 29 2008 - 06:49:20 CDT)
  • Re: Can not enter text in VMD plugin window (Fri Apr 25 2008 - 21:52:12 CDT)
  • Re: Rendering Labels with Tachyon (Thu Apr 24 2008 - 17:29:10 CDT)
  • Re: Rendering Labels with Tachyon (Thu Apr 24 2008 - 14:45:02 CDT)
  • Re: problem with "within" command of VMD (Thu Apr 24 2008 - 08:43:19 CDT)
  • Re: resolution screen in Linux (Thu Apr 24 2008 - 08:15:59 CDT)
  • Re: measure distance (Wed Apr 23 2008 - 09:04:00 CDT)
  • Re: memorry problem (Wed Apr 23 2008 - 06:58:42 CDT)
  • Re: bug in the g(r) evaluation? (Tue Apr 22 2008 - 14:32:07 CDT)
  • Re: bug in the g(r) evaluation? (Tue Apr 22 2008 - 10:10:35 CDT)
  • Re: warnings during plugin build (Tue Apr 22 2008 - 05:39:59 CDT)
  • RE: warnings during plugin build (Mon Apr 21 2008 - 18:45:50 CDT)
  • RE: warnings during plugin build (Sun Apr 20 2008 - 13:33:29 CDT)
  • RE: warnings during plugin build (Sat Apr 19 2008 - 18:40:41 CDT)
  • Re: warnings during plugin build (Sat Apr 19 2008 - 09:21:04 CDT)
  • Re: RMSD between two structures without the same number of atoms (Fri Apr 18 2008 - 09:20:29 CDT)
  • Re: PPMTOMPEG Quality (Thu Apr 17 2008 - 16:23:34 CDT)
  • Re: atomselect (Thu Apr 17 2008 - 11:07:27 CDT)
  • Re: measure hbonds between protein and water - problem with periodic boundary conditions (Thu Apr 17 2008 - 04:52:29 CDT)
  • Re: Trajectory title (Wed Apr 16 2008 - 11:06:05 CDT)
  • Re: Timer in VMD (Tue Apr 15 2008 - 18:58:46 CDT)
  • Re: catDCD (Mon Apr 14 2008 - 12:08:34 CDT)
  • Re: compilation with python 2.5 and file permissions from the CVS repository (Mon Apr 14 2008 - 05:16:19 CDT)
  • RE: compilation with python 2.5 and file permissions from the CVS repository (Sun Apr 13 2008 - 15:00:12 CDT)
  • Re: compilation with python 2.5 and file permissions from the CVS repository (Sun Apr 13 2008 - 12:58:26 CDT)
  • Re: change residue name and write a trajectory file (Thu Apr 10 2008 - 18:19:12 CDT)
  • Re: some questions about the RDF plugin (Mon Apr 07 2008 - 16:01:54 CDT)
  • Re: some questions about the RDF plugin (Mon Apr 07 2008 - 15:32:29 CDT)
  • Re: Insall Problem VMD Linux 1.8.6 Part II! (Sun Apr 06 2008 - 23:50:58 CDT)
  • Re: Install problem VMD Linux 1.8.6 (Sun Apr 06 2008 - 20:21:11 CDT)
  • Re: About Tcl command (Sun Apr 06 2008 - 00:58:40 CDT)
  • Re: How to read specific DCD frames directly in Fortran? (Sat Apr 05 2008 - 18:08:23 CDT)
  • Re: Topology file (Fri Apr 04 2008 - 11:52:27 CDT)
  • Re: Compiling VMD under Windows XP (Tue Apr 01 2008 - 06:06:22 CDT)
  • Re: Compiling VMD under Windows XP (Mon Mar 31 2008 - 21:47:02 CDT)
  • Re: using cvs under Windows XP (Mon Mar 31 2008 - 09:37:54 CDT)
  • Re: porcupine plot (Mon Mar 31 2008 - 04:01:53 CDT)
  • Re: Problems with PDB file format in VMD (Thu Mar 27 2008 - 20:42:45 CDT)
  • Re: Tcl 8.5.x in upcoming versions of VMD... (Thu Mar 27 2008 - 18:14:23 CDT)
  • Re: Tcl 8.5.x in upcoming versions of VMD... (Thu Mar 27 2008 - 17:32:20 CDT)
  • Re: How to see the original Origin (0,0,0, coordinate) of a system (Thu Mar 27 2008 - 11:57:58 CDT)
  • Re: problem with pbc (Thu Mar 27 2008 - 07:26:05 CDT)
  • Re: Can VMD show the interactions between different structure part? (Thu Mar 27 2008 - 06:43:41 CDT)
  • Re: problem with pbc (Thu Mar 27 2008 - 06:06:17 CDT)
  • Re: Can VMD show the interactions between different structure part? (Wed Mar 26 2008 - 23:19:40 CDT)
  • Re: problem with pbc (Wed Mar 26 2008 - 16:38:07 CDT)
  • Re: Can we get secondary structure from PDB files? (Wed Mar 26 2008 - 06:15:42 CDT)
  • Re: time correlation function (Tue Mar 25 2008 - 22:56:27 CDT)
  • Re: VMD tutorial for working with solid crystals (Tue Mar 25 2008 - 13:38:06 CDT)
  • RE: script to read dcd frame-at-a-time & write a selection (Mon Mar 24 2008 - 20:07:35 CDT)
  • RE: script to read dcd frame-at-a-time & write a selection (Mon Mar 24 2008 - 19:53:36 CDT)
  • RE: script to read dcd frame-at-a-time & write a selection (Mon Mar 24 2008 - 19:22:30 CDT)
  • Re: script to read dcd frame-at-a-time & write a selection (Mon Mar 24 2008 - 17:43:28 CDT)
  • Re: atoms with changing colors (Thu Mar 20 2008 - 17:05:53 CDT)
  • Re: RMSD calc (Thu Mar 20 2008 - 05:37:31 CDT)
  • Re: Calculating the Tilt Angle of a non-helical peptide (Wed Mar 19 2008 - 21:52:58 CDT)
  • Re: Calculating the Tilt Angle of a non-helical peptide (Wed Mar 19 2008 - 21:07:06 CDT)
  • Re: Build a VMD forum? (Wed Mar 19 2008 - 16:08:27 CDT)
  • Re: Radial Density (Wed Mar 19 2008 - 11:48:49 CDT)
  • Re: dipole (Wed Mar 19 2008 - 07:32:17 CDT)
  • Re: Diffusion Constant (Wed Mar 19 2008 - 06:09:56 CDT)
  • Re: Diffusion Constant (Tue Mar 18 2008 - 22:59:53 CDT)
  • Re: Display bond breaking (Tue Mar 18 2008 - 22:25:27 CDT)
  • Re: DLPOLY HISTORY FILE in VMD (Tue Mar 18 2008 - 11:23:31 CDT)
  • RE: closewater.tcl (Mon Mar 17 2008 - 16:02:02 CDT)
  • Re: GLSL lost (Mon Mar 17 2008 - 13:59:35 CDT)
  • RE: different numbers of frames even though... (Fri Mar 14 2008 - 13:05:03 CDT)
  • Re: different numbers of frames even though... (Fri Mar 14 2008 - 09:49:00 CDT)
  • Re: ramaplot (Fri Mar 14 2008 - 09:37:41 CDT)
  • Re: Does VMD support to draw a velocity field diagram? (Thu Mar 13 2008 - 18:03:54 CDT)
  • Re: snapshot not compatible with -dispdev text? (Mon Mar 10 2008 - 17:35:52 CDT)
  • Re: Automatically zoom so that the protein fill the display (Mon Mar 10 2008 - 13:50:50 CDT)
  • Re: pbc join (Sun Mar 09 2008 - 23:57:35 CDT)
  • Re: radial density over one frame (Sun Mar 09 2008 - 15:49:17 CDT)
  • Re: compile problem for VMD1.8.6: OpenGLRenderer.C (Sat Mar 08 2008 - 20:51:50 CST)
  • Re: calculate volume (Sat Mar 08 2008 - 12:29:19 CST)
  • Re: how to make smooth movies ? (Fri Mar 07 2008 - 10:40:59 CST)
  • Re: Using RMSDTT in a script and aligning volume data (Fri Mar 07 2008 - 10:23:46 CST)
  • Re: H2 bond distances calculation n displaying image (Fri Mar 07 2008 - 10:16:05 CST)
  • Re: RMSD trajectory Tool (Thu Mar 06 2008 - 07:48:05 CST)
  • Re: radial distribution function and number integrals (Wed Mar 05 2008 - 21:54:46 CST)
  • Re: radial distribution function and number integrals (Wed Mar 05 2008 - 16:34:14 CST)
  • Re: running vmd in parallel (Wed Mar 05 2008 - 12:37:02 CST)
  • Re: radial distribution function and number integrals (Wed Mar 05 2008 - 12:45:36 CST)
  • Re: VMD languaje information (Tue Mar 04 2008 - 11:57:08 CST)
  • Re: missing basic tutorials for VMD scripting? (Sat Mar 01 2008 - 06:49:32 CST)
  • Re: unusual bond between the cysteine and arginine residue during the simulation (Fri Feb 29 2008 - 13:47:55 CST)
  • Re: no convergence in align (Fri Feb 29 2008 - 09:25:23 CST)
  • Re: periodic images for trajectory (Wed Feb 27 2008 - 05:07:04 CST)
  • Re: Compute force between two atoms (Tue Feb 26 2008 - 21:42:48 CST)
  • Re: more on lammps and VMD coordinates (Tue Feb 26 2008 - 12:08:13 CST)
  • Re: control drawing method (Mon Feb 25 2008 - 14:51:57 CST)
  • Re: How to get rubber-like surface with Tachyon renderer (Mon Feb 25 2008 - 11:21:09 CST)
  • Re: classify and compute the forces between two atoms (Mon Feb 25 2008 - 10:08:44 CST)
  • Re: How to get rubber-like surface with Tachyon renderer (Mon Feb 25 2008 - 10:13:33 CST)
  • Re: Changing a structure of macromolecule with VMD (Sun Feb 24 2008 - 11:36:04 CST)
  • Re: visualizing disulphide bonds (Sun Feb 24 2008 - 06:21:41 CST)
  • Re: Ramachandran plot tcl script (Sat Feb 23 2008 - 17:17:38 CST)
  • Re: Residue replacement question] (Sat Feb 23 2008 - 17:29:35 CST)
  • Re: vmd snapshots without display (Fri Feb 22 2008 - 11:41:19 CST)
  • Re: movie generation without runtime frame show (Fri Feb 22 2008 - 06:54:42 CST)
  • Re: monitor helicity change (Thu Feb 21 2008 - 22:40:02 CST)
  • Re: VASP CHGCAR (Thu Feb 21 2008 - 17:18:50 CST)
  • Re: VASP CHGCAR (Thu Feb 21 2008 - 15:35:07 CST)
  • Re: couldn't fork child process: not enough memory (Thu Feb 21 2008 - 15:28:16 CST)
  • Re: defining bonds (Thu Feb 21 2008 - 15:17:50 CST)
  • Re: gromacs trajectory files (Thu Feb 21 2008 - 06:58:52 CST)
  • Re: Selection in VMD Graphical representation (Wed Feb 20 2008 - 12:05:29 CST)
  • Re: how to set molinfo from python (Tue Feb 19 2008 - 10:49:17 CST)
  • Re: tcl script memory problem - NOT in atomselect (Tue Feb 19 2008 - 07:35:20 CST)
  • Re: VMD limitation for loading large trajectory file (Fri Feb 15 2008 - 17:00:40 CST)
  • Re: Unable to see VDW , CPK representations (Fri Feb 15 2008 - 16:51:34 CST)
  • Re: display of periodic DCD information/PBCTOOL (Fri Feb 15 2008 - 12:22:40 CST)
  • Re: Volume data formats (Thu Feb 14 2008 - 12:23:56 CST)
  • Re: FieldLines (Tue Feb 12 2008 - 09:53:36 CST)
  • Re: installation problem vmd 1.8.6 on fedora 3 (Sat Feb 09 2008 - 07:57:27 CST)
  • Re: heuristic bond computation (Fri Feb 08 2008 - 08:03:31 CST)
  • Re: heuristic bond computation (Thu Feb 07 2008 - 22:16:18 CST)
  • Re: vmd maxAtom (Thu Feb 07 2008 - 05:58:14 CST)
  • Re: vmd maxAtom (Wed Feb 06 2008 - 10:47:56 CST)
  • Re: merge pdb (Wed Feb 06 2008 - 10:41:43 CST)
  • Re: namd help? (Tue Feb 05 2008 - 12:54:36 CST)
  • Re: Displaying Counter Alongside Animation (Tue Feb 05 2008 - 03:23:44 CST)
  • Re: Question about geometrical figures (Fri Feb 01 2008 - 11:28:35 CST)
  • Re: Rdf from a specific point (Fri Feb 01 2008 - 11:48:12 CST)
  • Re: question about 'measure bond' (Fri Feb 01 2008 - 09:46:30 CST)
  • Re: Rdf from a specific point (Fri Feb 01 2008 - 08:55:39 CST)
  • Re: animation of an atom diffusion inside a bulk crystal (Fri Feb 01 2008 - 05:01:33 CST)
  • Re: Percentage Helicity calculation in VMD (Thu Jan 31 2008 - 23:37:28 CST)
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