VMD-L Mailing List

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About this archive

Starting: Thu Dec 19 1996 - 11:40:41 CST
Ending: Fri Nov 20 2009 - 13:23:18 CST

$B:,>k(J $B6Q(J
- vizualization of modes (Tue Sep 30 2003 - 03:31:55 CDT)
- Re: ftp failed (Thu Aug 29 2002 - 03:21:12 CDT)
- Re: ftp failed (Tue Aug 27 2002 - 02:35:49 CDT)
Y. U. Sasidhar
- displaying hydrogen bonds when hydrogens are not available (Thu Jun 19 2008 - 07:34:23 CDT)
#WONG CHEE HOW#
- Fullerene coordinates (Fri Aug 27 2004 - 03:50:03 CDT)
- Colouring (Wed Jun 18 2003 - 01:02:39 CDT)
- RE: animation question (Fri Mar 28 2003 - 00:10:24 CST)
- Maximum number of atoms/bonds (Tue Jan 14 2003 - 19:04:54 CST)
- Loading XYZ trajectory file (Mon Dec 09 2002 - 19:17:00 CST)
- Problems with color (Mon Nov 11 2002 - 09:52:17 CST)
- Beta color of atoms (Thu Nov 07 2002 - 19:57:26 CST)
- RE: VMD 1.8 alpha 29 available for testing! (Fri Nov 01 2002 - 22:48:10 CST)
- RE: VMD 1.8 alpha 29 available for testing! (Fri Nov 01 2002 - 22:47:01 CST)
- Coloring of atoms/molecules (Thu Oct 31 2002 - 23:24:13 CST)
- How to show the strain energies of each atom (Thu Sep 19 2002 - 02:36:27 CDT)
.
- VMD 1.2b2 Linux & MSMS ... (Sun May 17 1998 - 08:55:16 CDT)
04215287d_at_polyu.edu.hk
- .pdb file from XMD (Thu Nov 02 2006 - 08:39:44 CST)
1(484)993-7152 Marty
- ! Obtain degrees from Prestigious non-accredite dUniversities (Sat Jun 23 2007 - 01:45:28 CDT)
_at_huji.ac.il
- Re: sending arguments to tcl (Sun Feb 04 2007 - 02:21:02 CST)
- sending arguments to tcl (Thu Feb 01 2007 - 13:39:20 CST)
- Re: [Fwd: pdb from trajectory] some clarification (Wed Jan 24 2007 - 04:37:40 CST)
- [Fwd: pdb from trajectory] some clarification (Tue Jan 23 2007 - 09:41:49 CST)
- pdb from trajectory (Tue Jan 23 2007 - 09:16:29 CST)
- Re: [Fwd: Re: create new topology file for new molecule] (Wed Jan 10 2007 - 03:01:50 CST)
- create new topology file for new molecule (Tue Jan 09 2007 - 10:06:25 CST)
- recenter peptide in PBC (Tue Dec 26 2006 - 04:54:20 CST)
- vmd questions (Thu Dec 21 2006 - 05:09:59 CST)
a a
- Re: redhat linux vmd (Mon May 22 2006 - 21:18:43 CDT)
- redhat linux vmd (Mon May 22 2006 - 03:51:59 CDT)
A D
- PBCTools-problem getting unitcell parameters (Thu Nov 12 2009 - 19:40:31 CST)
- How to translate my diffused protein back to COM? (Mon Oct 05 2009 - 18:20:15 CDT)
- animate read and write (Wed Apr 22 2009 - 15:36:00 CDT)
- putting a set of selections in a list or an array (Sun Jan 11 2009 - 12:14:08 CST)
- vmd shuts itself down (Thu Jun 26 2008 - 19:20:58 CDT)
AA
- XYZ trajectory with different atom types? (Fri Jan 16 2009 - 13:21:15 CST)
Aaron Oakley
- Script to rendering ANISOU records in VMD (Tue Jun 19 2007 - 21:22:51 CDT)
- Compute B-factor from MD run (Fri Sep 12 2003 - 03:02:42 CDT)
- protein/carbohydrate (Tue Sep 02 2003 - 03:07:53 CDT)
- protein/carbohydrate (Fri Aug 08 2003 - 22:48:54 CDT)
Aaron.Oakley_at_csiro.au
- RE: How to get rid of default patch for NTER and CTER (Sun Jan 18 2009 - 19:24:36 CST)
- RE: B factor calculation (Tue Nov 04 2008 - 16:27:02 CST)
- contour plots (Wed Jul 09 2008 - 22:50:54 CDT)
- problem loading trajectory in VMD under windows XP (Tue Jun 10 2008 - 18:41:24 CDT)
ABEL Stephane 175950
- RE : plot residues without hydrogen atoms (Tue May 20 2008 - 11:11:46 CDT)
- plot residues without hydrogen atoms (Tue May 20 2008 - 07:02:41 CDT)
- problem with time line plugin in VMD (Fri Jan 18 2008 - 03:36:30 CST)
Abi Ghanem josephine
- Draw a circle (Fri Mar 23 2007 - 09:47:12 CDT)
Abu Naser
- movie (Sun Nov 09 2008 - 11:06:20 CST)
- pick atom id script (Fri Jul 11 2008 - 06:07:05 CDT)
- RE: (Thu Jul 10 2008 - 11:23:19 CDT)
- (no subject) (Thu Jul 10 2008 - 10:43:17 CDT)
accomp lin
- atom name can not exceed four characters in pdb and psf? (Mon Jun 29 2009 - 21:59:36 CDT)
- Can bonds radius be controlled by tcl command? (Wed May 13 2009 - 03:54:47 CDT)
- Re: installed plugin won't show up next time (Fri Apr 24 2009 - 04:59:22 CDT)
- installed plugin won't show up next time (Thu Apr 23 2009 - 06:58:38 CDT)
- How to use " segment " in tcl script. (Wed Mar 11 2009 - 01:31:13 CDT)
accutone_at_atlsky.com
- 99 Toyotas as low as 2% over invoice (Sat Sep 05 1998 - 19:10:53 CDT)
Adam Kraut
- Render surface colored by electrostatic potential (Tue Oct 28 2008 - 13:27:52 CDT)
Adam Kubach
- docking (Wed Sep 29 2004 - 20:20:38 CDT)
- Phantom and VMD (Mon Sep 20 2004 - 15:18:18 CDT)
Adam Marcus
- Copying a selection (Mon Mar 22 2004 - 01:04:29 CST)
Adelene Sim
- Plotting Number of Hbonds and % Helicity with Time (Sat Nov 11 2006 - 18:11:22 CST)
Adilah Hussien
- Tracking bond length changes in a simulation (Tue Jun 19 2007 - 04:33:22 CDT)
Adrain Koh
- Apologies (Wed Nov 10 2004 - 04:12:55 CST)
- Conversion of trajectory files (Tue Nov 09 2004 - 21:43:52 CST)
- Re: Converting .txt trajectory files to VMD compatible format (Tue Nov 09 2004 - 21:40:18 CST)
- Converting .txt trajectory files to VMD compatible format (Fri Nov 05 2004 - 04:43:40 CST)
Adrian E. Roitberg
- pdb naming convention (Wed Apr 17 2002 - 07:59:32 CDT)
- Re: New version of VMD movie script/plugin available (Wed Mar 13 2002 - 07:22:32 CST)
- immersadesk (Tue Apr 16 2002 - 09:06:25 CDT)
Adrian Kaats
- Re: How to see the original Origin (0,0,0, coordinate) of a system (Thu Mar 27 2008 - 15:56:52 CDT)
- Re: Loading a PDB file with different atom counts in models (Tue Mar 25 2008 - 07:41:38 CDT)
- Loading a PDB file with different atom counts in models (Fri Mar 21 2008 - 09:19:35 CDT)
- atomselect protein (Thu Mar 20 2008 - 16:39:54 CDT)
- ion 'channel axis' (Wed Mar 28 2007 - 15:55:17 CDT)
- OmpF biological unit (Thu Mar 15 2007 - 18:58:17 CDT)
- Re: Displaying biological unit revisited (Thu Nov 02 2006 - 14:23:41 CST)
- Displaying biological unit revisited (Tue Oct 31 2006 - 12:22:19 CST)
Adrian Koh
- RE: Displaying Counter alongside animation (Mon Feb 11 2008 - 03:08:44 CST)
- Displaying Counter Alongside Animation (Tue Feb 05 2008 - 00:20:36 CST)
- Assigning Color Codes for stress/force in .xyz trajectory files (Fri Feb 09 2007 - 00:08:26 CST)
- Re: VMD 1.8.3 works ok for 64-bit windows, but not VMD 1.8.5 (Thu Nov 23 2006 - 23:31:49 CST)
- VMD 1.8.3 works ok for 64-bit windows, but not VMD 1.8.5 (Thu Nov 23 2006 - 22:07:27 CST)
- Installing VMD Windows version on 64-bit Windows Environment (Tue Nov 21 2006 - 21:30:01 CST)
- Re: Altering Definition of Molecular Coloring Method (Mon Jul 31 2006 - 23:18:19 CDT)
- Altering Definition of Molecular Coloring Method (Mon Jul 31 2006 - 05:08:56 CDT)
- Movie Maker in VMD (Wed Jul 05 2006 - 04:30:49 CDT)
- Re: Renaming Molecule Names in existing .xyz trajectory files (Tue Jul 04 2006 - 23:07:57 CDT)
- Renaming Molecule Names in existing .xyz trajectory files (Tue Jul 04 2006 - 01:44:28 CDT)
- Changing Graphical Representations (Wed Jan 25 2006 - 00:15:54 CST)
- Adding New Color Definitions to Color Form (Tue Jan 24 2006 - 03:08:48 CST)
- Changing Default Settings for VMD Main Window (Thu Jan 19 2006 - 05:08:23 CST)
- Error Encountered in making vmdmovie (Tue May 03 2005 - 02:42:00 CDT)
- Re: Customizing VMD Sessions (Thu Apr 14 2005 - 06:03:41 CDT)
- Customizing VMD Sessions (Thu Apr 14 2005 - 02:49:19 CDT)
- Defining Bonds in .xyz file format (Wed Feb 16 2005 - 02:29:09 CST)
Adrian Roitberg
- CMYK (Tue Oct 30 2007 - 16:08:37 CDT)
- RNA (Mon May 14 2007 - 14:25:03 CDT)
- vmd/gaussian cubes (Fri Mar 02 2007 - 10:11:08 CST)
- question about rotations (Fri Feb 09 2007 - 08:33:34 CST)
- Volume Slice (Wed Jan 31 2007 - 15:07:45 CST)
- Re: visualising protein dynamics (Wed Jun 22 2005 - 16:57:47 CDT)
Adrian turjanski
- Clip (Wed Sep 28 2005 - 20:49:04 CDT)
- X error (Sun Sep 04 2005 - 16:00:59 CDT)
- Problems with VMD in Federa 4 (x86_64) (Sat Aug 27 2005 - 17:22:00 CDT)
Ahmed Nawar
- freevr tool transformation (Thu Jan 03 2008 - 00:28:31 CST)
- FreeVR wand (Tue Dec 04 2007 - 03:42:13 CST)
- Re: cave (Tue Nov 27 2007 - 01:00:42 CST)
- cave (Mon Nov 26 2007 - 06:12:41 CST)
- RE: Suspected SpamFR:RE: cave (Mon Nov 26 2007 - 00:54:23 CST)
- RE: cave (Sun Nov 25 2007 - 09:06:37 CST)
- cave (Thu Nov 22 2007 - 06:09:24 CST)
Ahmet Bakan
- Re: Representation problem (Thu Oct 15 2009 - 12:16:26 CDT)
- Re: Representation problem (Tue Sep 29 2009 - 09:42:41 CDT)
- Representation problem (Mon Sep 28 2009 - 16:22:36 CDT)
- RE: Counting number of hydrogen bonds in the representation (Wed Sep 15 2004 - 07:44:29 CDT)
- RE: Counting number of hydrogen bonds in the representation (Wed Sep 15 2004 - 03:39:56 CDT)
- Euro QSAR 2004 (Sun Sep 05 2004 - 15:42:27 CDT)
- RE: namd-l: cff91 force field in namd + A Question (Wed Aug 25 2004 - 10:53:59 CDT)
- How to enable Python on Windows XP (Fri Jul 30 2004 - 16:30:09 CDT)
- Average coordinates (Thu Jun 24 2004 - 13:51:12 CDT)
- RE: Torsional Angles (Mon May 31 2004 - 15:54:52 CDT)
- RE: Torsional Angles (Sun May 30 2004 - 19:41:49 CDT)
- Torsional Angles (Wed May 26 2004 - 13:52:53 CDT)
- RE: measuring distances in vmd tkon (Thu May 06 2004 - 17:45:21 CDT)
- RE: Selection problem on TkCon (Tue May 04 2004 - 18:57:39 CDT)
- RE: Selection problem on TkCon (Tue May 04 2004 - 06:47:55 CDT)
- RE: Selection problem on TkCon (Mon May 03 2004 - 13:42:43 CDT)
- RE: Selection problem on TkCon (Mon May 03 2004 - 05:56:25 CDT)
- Selection problem on TkCon (Sun May 02 2004 - 19:55:43 CDT)
- RE: MOE discussion (Wed Apr 28 2004 - 17:26:07 CDT)
- TCL string operation (Sat Apr 03 2004 - 07:48:40 CST)
- Sine Cosine (Sat Mar 13 2004 - 18:06:04 CST)
- RE: Rotatind a chain (some further Qs) (Fri Mar 12 2004 - 13:43:41 CST)
- Rotatind a chainn (Fri Mar 12 2004 - 08:59:09 CST)
ailong
- antialiasing problem (Thu Nov 20 2003 - 12:54:22 CST)
Aitor Gonzalez
- Re: bond length definition (Wed Apr 25 2001 - 04:41:32 CDT)
- Re: animation and reps (Mon Apr 09 2001 - 08:17:52 CDT)
- python vmd interface (Thu Mar 29 2001 - 08:57:32 CST)
- Re: python loop (Fri Mar 16 2001 - 12:39:34 CST)
- python loop (Fri Mar 16 2001 - 04:40:38 CST)
- Re: switching off the location axes (Fri Mar 09 2001 - 03:10:03 CST)
- switching off the location axes (Fri Mar 09 2001 - 02:48:53 CST)
- Re: making a movie with a serie of pdb's (Fri Dec 08 2000 - 05:26:00 CST)
- making a movie with a serie of pdb's (Thu Dec 07 2000 - 06:51:07 CST)
aizoon_at_gmx.net
- Arbitrary values of isosurface (Mon Oct 19 2009 - 06:25:32 CDT)
Ajeeta kaushiki
- VMD 1.8.7 installation problem (Mon Jul 20 2009 - 06:55:41 CDT)
Ajith Gunaratne
- (no subject) (Sun Apr 11 2004 - 23:36:05 CDT)
Akemi Matsuno-Yagi
- Re: bonds not created as desired (Tue Jun 09 2009 - 15:09:25 CDT)
- bonds not created as desired (Tue Jun 09 2009 - 13:01:09 CDT)
Akemi Yagi
- Main window (button bars) does not start (Tue May 14 2002 - 10:02:18 CDT)
Akiyama, Jotaro
- Re: Coloring by type? (Fri Nov 12 2004 - 02:45:10 CST)
- Re: Coloring by type? (Thu Nov 11 2004 - 18:56:02 CST)
- Re: LAMMPS visualization (Thu Nov 11 2004 - 18:27:15 CST)
- Coloring by type? (Mon Nov 08 2004 - 03:06:34 CST)
Akshay Patny
- RE: measure XYZ dimensions of a system (Wed Jan 24 2007 - 12:47:47 CST)
- measure XYZ dimensions of a system (Wed Jan 24 2007 - 10:47:00 CST)
- cutting short a DMPC bilayer in VMD (Thu Oct 05 2006 - 21:23:43 CDT)
- VMD PDB to LEAP Readable PDB (Wed Oct 04 2006 - 20:09:14 CDT)
- Solvate Plug-In -b Boundary variable (Thu Sep 21 2006 - 10:18:10 CDT)
- which POPC Bilayer is better to start? (Wed Sep 20 2006 - 16:40:07 CDT)
- GPCR-Membrane Issue (Wed Sep 20 2006 - 12:29:49 CDT)
- RE: Centering GPCR onto Lipid Bilayer (Tue Sep 19 2006 - 16:19:59 CDT)
- Centering GPCR onto Lipid Bilayer (Mon Sep 18 2006 - 14:28:35 CDT)
- FW: Membrane PlugIn issue (Sat Sep 16 2006 - 14:20:23 CDT)
- RE: DPPC Bilayer Size (Fri Sep 15 2006 - 12:07:51 CDT)
- DPPC Bilayer Size (Thu Sep 14 2006 - 13:49:06 CDT)
- RE: protein in membrane (Tue Sep 12 2006 - 16:05:04 CDT)
- RE: protein in membrane (Tue Sep 12 2006 - 15:45:31 CDT)
Al Courey
- rendering high resolution images (Mon Apr 24 2006 - 16:19:52 CDT)
Al-Ali, Hassan
- RE: Vmd on Fedora 9 (Wed Jul 30 2008 - 19:16:09 CDT)
- RE: Vmd on Fedora 9 (Wed Jul 30 2008 - 15:12:38 CDT)
- Vmd on Fedora 9 (Wed Jul 30 2008 - 11:43:28 CDT)
Al-Rawi, Ahlam
- external force (Tue Oct 24 2006 - 11:41:54 CDT)
- external force (Wed Oct 18 2006 - 19:33:51 CDT)
- RE: psf for protein (Tue Sep 19 2006 - 12:03:55 CDT)
- psf for protein (Mon Sep 18 2006 - 17:24:27 CDT)
- Water and protein (Wed May 03 2006 - 13:40:44 CDT)
Alan
- Re: namdenergy and simulation with amber ff (Fri Aug 01 2008 - 02:05:23 CDT)
- VMD with amber rst7 and parm7 files (Thu Jul 31 2008 - 03:26:33 CDT)
Alan Wilter Sousa da Silva
- Re: secondary structure update (Mon Nov 03 2003 - 04:16:27 CST)
- nvidia driver (Tue Sep 30 2003 - 09:30:48 CDT)
- Re: Python's future in VMD (Tue Sep 30 2003 - 07:48:28 CDT)
- Re: stereo (Wed May 28 2003 - 13:02:00 CDT)
- Re: Surfaces/Cavities (Thu Jan 23 2003 - 06:21:18 CST)
- Re: Which drawing method is used in the picture? (Wed Apr 10 2002 - 10:20:05 CDT)
- Re: Plotting elect. pot. surface (Wed Mar 13 2002 - 08:05:14 CST)
- Re: New version of VMD movie script/plugin available (Wed Mar 13 2002 - 07:58:33 CST)
- Molscript (Wed Mar 13 2002 - 07:32:50 CST)
- Re: Removing perspective projection at startup (Thu Feb 28 2002 - 12:27:47 CST)
- Re: Plotting elect. pot. surface (Tue Feb 26 2002 - 14:16:22 CST)
- Re: Plotting elect. pot. surface (Mon Feb 25 2002 - 14:40:57 CST)
- Plotting elect. pot. surface (Mon Feb 25 2002 - 12:15:52 CST)
alarcon_at_lncc.br
- STL files (Thu Jul 17 2003 - 11:07:02 CDT)
- STL format file - rendering (Thu Dec 19 2002 - 13:39:20 CST)
Alba Colet Subirachs
- VMD 3D stereo hardware (Thu Mar 06 2008 - 03:16:25 CST)
- VMD languaje information (Tue Mar 04 2008 - 10:24:09 CST)
albert albert
- removed all proton in protein with vmd (Mon Jul 27 2009 - 01:40:34 CDT)
Albert Sun
- Re: Picking atoms: romoving or changing the position of atoms (Mon Jul 19 2004 - 11:51:50 CDT)
- Picking atoms: romoving or changing the position of atoms (Sun Jul 18 2004 - 09:17:00 CDT)
- could not make avi file (Tue Apr 13 2004 - 10:58:49 CDT)
- subscribe and questions (Fri Nov 14 2003 - 13:06:34 CST)
Alberto Perez
- Re: complete residues within (Thu Mar 06 2008 - 04:38:02 CST)
Alberto Sergio Garay
- Question about running tcl/tk script without graphic interface (vmd option -dispdev none ...) (Fri Oct 16 2009 - 17:48:04 CDT)
- Re: Funny tcl/tk script behavior.... (Tue Jun 30 2009 - 12:08:32 CDT)
- Funny tcl/tk script behavior.... (Tue Jun 30 2009 - 08:02:57 CDT)
- Re: Problem using pbc wrap..... (Fri Jun 26 2009 - 15:01:35 CDT)
- Problem using pbc wrap..... (Fri Jun 26 2009 - 07:13:44 CDT)
- Memory Problem with tcl/tk script...(Solved!) (Thu Jun 04 2009 - 07:08:19 CDT)
- Memory Problem with tcl/tk script...(3) (Wed Jun 03 2009 - 14:17:07 CDT)
- Memory Problem with tcl/tk script...(2) (Wed Jun 03 2009 - 12:54:53 CDT)
- Memory Problem with tcl/tk script... (Tue Jun 02 2009 - 07:25:16 CDT)
- Question3 about introducing variables in "mol selection..." (Fri May 22 2009 - 16:47:25 CDT)
- Question2 about introducing variables in "mol selection..." (Fri May 22 2009 - 15:31:51 CDT)
- Question about introducing variables in "mol selection..." (Fri May 22 2009 - 10:06:54 CDT)
- VMD Animation example doesn't work... (Fri Dec 19 2008 - 06:52:05 CST)
- VMD Animation example doesn't work... (Tue Dec 16 2008 - 04:43:23 CST)
- rmsd per residue (Tue Jul 01 2008 - 05:36:46 CDT)
- Slow tcl/tk script for trajectory analysis (Fri May 16 2008 - 14:34:40 CDT)
Alberto Torres
- Color of bond betwen atoms with different colors (Fri May 16 2008 - 15:35:40 CDT)
aldo jongejan
- Babel and VMD (Tue Mar 03 1998 - 11:05:07 CST)
Ale Gomez
- Re: vmd bug in ubuntu 9.10 (Wed Nov 11 2009 - 17:56:44 CST)
- Re: Align membrane (Fri Oct 16 2009 - 19:18:41 CDT)
- Align membrane (Fri Oct 16 2009 - 13:24:48 CDT)
- Lipid Membrane (Sun Oct 11 2009 - 22:58:08 CDT)
Alec Robertson
- Re: fglrx driver workaround? (Thu Mar 31 2005 - 10:18:45 CST)
- fglrx driver workaround? (Thu Mar 31 2005 - 09:53:21 CST)
Alejandro Ortega
- Re: TXT program editor (Fri Aug 29 2008 - 13:11:13 CDT)
- TXT program editor (Thu Aug 28 2008 - 14:43:14 CDT)
- Maximum velocities (Thu Jul 03 2008 - 16:03:13 CDT)
- Writepdb with Solvation Box (Tue May 06 2008 - 12:50:23 CDT)
- Topology file (Fri Apr 04 2008 - 11:24:14 CDT)
- DCD file (Fri Mar 07 2008 - 12:07:23 CST)
Aleksander Debinski
- lags on VDW (Mon Dec 12 2005 - 03:54:33 CST)
Aleksei Aksimentiev
- Postdoc position in computational biophysics and nanotehnology (Tue May 05 2009 - 14:28:20 CDT)
Alessandro Cembran
- Trajectory title (Wed Apr 16 2008 - 07:53:47 CDT)
- Re: how to visualize Charmm generated files (Wed Jun 06 2007 - 18:15:41 CDT)
- NAMD Energy - Hexagonal Cell (Mon Mar 12 2007 - 18:10:14 CDT)
- Re: namd-l: Re: ionize (big, big, big system!) (Mon Feb 12 2007 - 18:57:05 CST)
- Re: namd-l: Re: ionize (big, big, big system!) (Mon Feb 12 2007 - 11:37:20 CST)
Alessandro.Maiorana_at_roma2.infn.it
- Remove PBC (Sun Dec 21 2008 - 04:09:38 CST)
Alessio Alexiadis
- dipole (Wed Mar 19 2008 - 06:54:21 CDT)
- combine together two PBD/PSF files (Wed Nov 07 2007 - 07:38:42 CST)
- merge pbd psf files (update) (Wed Nov 07 2007 - 07:47:48 CST)
- time step (Wed Oct 03 2007 - 07:44:13 CDT)
- hbonds (how to count) (Wed Oct 03 2007 - 03:28:52 CDT)
Alex Vakhrouchev
- Re: console in vmd-1.8.3 amd64 is blank (like white text on white background) so I can't see any output messages (Tue Jun 07 2005 - 00:09:22 CDT)
Alexander A. Vakhrushev
- Re: Windows version: Loading/writing files (Mon Oct 13 2008 - 08:49:21 CDT)
- Re: Fw: VMD 1.8.6 for UBUNTU 8.04LTS (Wed Oct 08 2008 - 23:37:06 CDT)
- Re: Problems after installation (ubuntu 8.04) (Tue Oct 07 2008 - 12:08:35 CDT)
- Re: Problems after installation (ubuntu 8.04) (Tue Oct 07 2008 - 12:03:16 CDT)
- Re: Problems after installation (ubuntu 8.04) (Fri Oct 03 2008 - 22:55:52 CDT)
- Re: Problems after installation (ubuntu 8.04) (Fri Oct 03 2008 - 08:43:39 CDT)
- Re: water box (Tue Sep 30 2008 - 09:24:43 CDT)
- Re: water box (Tue Sep 30 2008 - 04:55:46 CDT)
- Re: question about sscache (Fri Sep 26 2008 - 22:41:50 CDT)
- Re: counting gas molecules inside the nanotube (Thu Sep 18 2008 - 12:11:04 CDT)
Alexander Balaeff
- Re: [VMD TECH] Tracing VMD Variables (Part II) (Thu May 01 1997 - 16:29:52 CDT)
- Files closing/Memory issues in VMD (Mon Feb 19 2007 - 14:03:54 CST)
Alexander Farley
- Re: Chromium (Sun Sep 08 2002 - 09:44:58 CDT)
- Re: stereo on linux: DTI monitors? (Sun Sep 08 2002 - 09:36:48 CDT)
Alexander Metz
- How to get rubber-like surface with Tachyon renderer (Mon Feb 25 2008 - 09:37:02 CST)
Alexander Peyser
- Re: VMD 1.8.2 and 1.8.3 fail on MacOS X after upgrade to 10.3.8 (Wed Mar 02 2005 - 12:45:30 CST)
- Re: User colors and povray (Wed Feb 23 2005 - 16:01:19 CST)
Alexander Spaar
- Re: AMBER pbsa electrostatic potential map (Tue Apr 19 2005 - 03:58:55 CDT)
- UHBD-grids (Fri Apr 15 2005 - 04:12:57 CDT)
Alexandr Bezginov
- Fullscreen mode in VMD (Tue Oct 07 2008 - 12:34:59 CDT)
Alexandr Isayev
- Re: MultiSeq on the windows vista OS (Mon Sep 24 2007 - 14:25:00 CDT)
- Re: Displaying the periodic box ... (Thu May 24 2007 - 10:59:08 CDT)
- Re: Tachyon renderer (Wed May 16 2007 - 23:40:54 CDT)
- count variable number of molecules (Wed Feb 28 2007 - 14:23:11 CST)
- Re: rendering time bars or other vmd added graphics with povray (Mon Feb 05 2007 - 11:23:12 CST)
- Re: Beginner's problem (Tue Nov 14 2006 - 12:01:36 CST)
- Re: .pdb file from XMD (Thu Nov 02 2006 - 09:18:20 CST)
- Re: CPK Graphical Representation (Fri Oct 20 2006 - 11:48:40 CDT)
- Re: movie (Wed Oct 11 2006 - 18:46:16 CDT)
- Re: puts format (Wed Sep 13 2006 - 16:18:04 CDT)
- Re: Movie Maker in VMD (Wed Jul 05 2006 - 10:27:02 CDT)
- Re: Making a Movie (Tue Jun 20 2006 - 13:07:45 CDT)
alexandra.marques_at_fc.up.pt
- secondary_struct script (Wed Apr 18 2007 - 11:28:43 CDT)
- hbond calculation (Mon Mar 26 2007 - 15:49:19 CDT)
- hbonds problem (Sat Feb 17 2007 - 17:52:45 CST)
- Re: sasa by residue (Thu Jan 11 2007 - 13:42:07 CST)
- sasa by residue (Mon Jan 08 2007 - 19:01:04 CST)
- python (Sun Nov 12 2006 - 11:23:39 CST)
- Re: output file format (Fri Sep 01 2006 - 14:20:35 CDT)
- output file format (Thu Aug 31 2006 - 10:20:14 CDT)
- Re: water numbering (Mon Aug 28 2006 - 10:52:03 CDT)
- water numbering (Mon Aug 28 2006 - 06:50:33 CDT)
- gyration radius for a trajectory (Fri Aug 25 2006 - 05:38:06 CDT)
- large mdcrd files (Sun Aug 20 2006 - 07:56:30 CDT)
Alexandre A. Vakhrouchev
- Re: contour plots (Mon Jul 21 2008 - 02:25:51 CDT)
- Re: Away from VMD-L/email until July 8th... (Thu Jun 19 2008 - 21:09:17 CDT)
- Re: Dipole moment? (Sat Jun 07 2008 - 13:25:40 CDT)
- Dipole moment? (Sat Jun 07 2008 - 07:21:55 CDT)
- Re: Total list of Tcl features (Sat Jun 07 2008 - 10:31:31 CDT)
- Re: Total list of Tcl features (Sat Jun 07 2008 - 01:14:37 CDT)
- Total list of Tcl features (Sat Jun 07 2008 - 00:15:05 CDT)
- Re: Individual atoms trajectory (Fri May 16 2008 - 02:08:59 CDT)
- Re: Individual atoms trajectory (Fri May 16 2008 - 01:08:22 CDT)
- Energy plot script (Wed May 14 2008 - 22:11:19 CDT)
- Individual atoms trajectory (Wed May 14 2008 - 00:34:38 CDT)
- Re: Recompile VMD with larger index types (Sun May 11 2008 - 11:20:47 CDT)
- Recompile VMD with larger index types (Sat May 10 2008 - 07:36:43 CDT)
- Atomselect in loops (Fri Nov 24 2006 - 03:50:34 CST)
Alexandre Suman de Araujo
- Problem using psfgen and carbohydrate charmm parameters. (Thu Oct 08 2009 - 16:19:26 CDT)
- Building polymer psf from monomer topology (Thu Jul 30 2009 - 14:48:13 CDT)
- Bug in molefacture proline residue of official version (1.8.6 LINUXAMD64) (Mon Feb 02 2009 - 12:51:46 CST)
- Problems to load Gaussian .log file in Paratool (Mon Jul 30 2007 - 13:05:56 CDT)
- Molecular Display component (Mon Mar 28 2005 - 10:56:17 CST)
- Adding Atoms in Colors Menu (Fri Apr 02 2004 - 03:33:52 CST)
Alexandre Vakhrouchev
- (no subject) (Wed Nov 19 2003 - 02:11:14 CST)
- Re: POV-Ray (Wed Nov 12 2003 - 03:33:03 CST)
- (no subject) (Thu Nov 06 2003 - 06:43:18 CST)
- VMD and Mandrake Linux 9.1 (Thu Nov 06 2003 - 02:59:04 CST)
Alexe Bojovschi
- Small molecules alignment with VMD (Sun Jun 04 2006 - 23:16:47 CDT)
Alexei Podtelezhnikov
- RE: dihedral angles cleaned up (Fri Aug 05 2005 - 17:47:13 CDT)
- dihedral angles cleaned up! (Thu Aug 04 2005 - 11:19:31 CDT)
- dihedral angles cleaned up (Thu Aug 04 2005 - 10:09:38 CDT)
Alexey Kozlenkov
- python disabled (Wed Jan 30 2002 - 14:53:54 CST)
- 3 simple questions from a newbie (Mon Jul 23 2001 - 07:01:43 CDT)
Alexis Salas
- problem with DPPC topology (Tue Mar 08 2005 - 14:29:43 CST)
- Activation energy (Thu Aug 19 2004 - 13:33:36 CDT)
- Solvating with TIP4 or SPC (Tue Aug 03 2004 - 16:01:03 CDT)
- TIP3 by TIP4 (Tue Aug 03 2004 - 13:57:40 CDT)
- How i can changue the charge of my protein (Mon Aug 02 2004 - 13:13:06 CDT)
Alfred Shaohui Zheng
- how to draw the bonds in VMD? (Sat Sep 06 2008 - 03:07:16 CDT)
Alfredo Quevedo
- Re: Question about the Main Menu window display (Wed Oct 15 2008 - 13:31:58 CDT)
- Question about the Main Menu window display (Fri Oct 10 2008 - 14:15:47 CDT)
Alfredo Valles
- Re: Python's future in VMD (Tue Sep 30 2003 - 08:01:05 CDT)
- python question 2 (Mon Aug 25 2003 - 04:02:10 CDT)
- python question (Sat Aug 23 2003 - 09:41:37 CDT)
- hi (Sat Aug 23 2003 - 06:15:08 CDT)
Ali Deyhim
- Re: free sample!!! (Wed May 09 2001 - 10:35:13 CDT)
Alicia Hopkins
- measuring h-bonds (Sun Sep 19 2004 - 08:42:12 CDT)
- measuring h-bonds (Thu Sep 16 2004 - 09:24:33 CDT)
- measuring h-bond distances (Sat Sep 11 2004 - 12:01:58 CDT)
Alison Grinthal
- list of residue contacts (Wed Sep 23 2009 - 15:02:23 CDT)
- Re: measure rmsf (Fri Jul 10 2009 - 13:10:14 CDT)
- measure rmsf (Fri Jul 10 2009 - 08:31:26 CDT)
- alignment (Fri Jun 19 2009 - 09:45:28 CDT)
- movie maker (Tue Jun 16 2009 - 09:44:48 CDT)
- helix axes (Tue Mar 31 2009 - 07:34:56 CDT)
- center of mass (Mon Jan 12 2009 - 13:51:43 CST)
- plotting on Mac (Fri Aug 10 2007 - 14:50:11 CDT)
- overlay (Tue May 29 2007 - 15:58:18 CDT)
- overlay (Mon May 28 2007 - 06:45:38 CDT)
Althea Lake
- You and a Rolex watch (Tue Apr 15 2008 - 17:12:00 CDT)
Amadeu
- Re: povray problem: degenerate cylinder (Fri May 05 2006 - 09:48:43 CDT)
- povray problem: degenerate cylinder (Fri May 05 2006 - 07:09:51 CDT)
Amarda Shehu
- Re: how to reset a timed out connection (Tue Apr 24 2007 - 13:55:24 CDT)
- how to reset a timed out connection (Tue Apr 24 2007 - 09:23:44 CDT)
- Re: Best fit plane axis (Fri Dec 08 2006 - 14:21:19 CST)
- special instructions in psfgen for circular proteins? (Thu Mar 30 2006 - 16:50:02 CST)
- understanding NOE restraints (Mon May 02 2005 - 18:56:34 CDT)
- criteria for detecting hydrogen bonds (Sun Apr 17 2005 - 18:14:21 CDT)
- handling electron density maps (.mrc and .map files) (Sat Dec 18 2004 - 15:29:30 CST)
- outputing xyz coordinates of selection (Sat Oct 23 2004 - 14:58:21 CDT)
- Re: superimposing frames (Wed Sep 22 2004 - 12:16:56 CDT)
- superimposing frames (Wed Sep 22 2004 - 10:51:57 CDT)
Amaury Pupo Meriño
- saltbr plugging problem: too many open files (Fri Dec 21 2007 - 09:31:07 CST)
Amit
- Small molecules (Fri Oct 12 2007 - 18:02:51 CDT)
amit dong
- glycerol box (Thu Jun 28 2007 - 11:14:12 CDT)
- H-bonds (Tue Apr 24 2007 - 10:58:13 CDT)
- contact map (over all frames) (Fri Apr 13 2007 - 15:53:24 CDT)
- H-bond energy (Thu Jan 18 2007 - 18:13:11 CST)
Amit Paliwal
- dcd to coor files (Fri May 14 2004 - 15:18:26 CDT)
- Re: trouble loading dcd files (Sun May 09 2004 - 09:48:37 CDT)
- Re: RE: trouble loading dcd files (Sun May 09 2004 - 09:53:07 CDT)
- trouble loading dcd files (Sat May 08 2004 - 23:43:13 CDT)
amit_at_mbu.iisc.ernet.in
- Dynamic selection of residues on a trajectory (Tue Nov 07 2006 - 11:07:13 CST)
- Dynamic selection of residues on a trajectory (Tue Nov 07 2006 - 10:45:19 CST)
- Selection of residues in a trajectory (Tue Oct 31 2006 - 13:50:23 CST)
amodzelewska_at_dns.iimcb.gov.pl
- autoionize script (Sun May 16 2004 - 13:21:58 CDT)
amodzelewska_at_iimcb.gov.pl
- Re: error when solvating protein/vmd1.8.4a22 (Tue Nov 08 2005 - 08:44:30 CST)
Amr Rizq
- RE: Problem in IMD with Compiled VMD (Wed Mar 04 2009 - 09:20:20 CST)
- RE: Problem in IMD with Compiled VMD (Wed Mar 04 2009 - 08:55:33 CST)
- Problem in IMD with Compiled VMD (Wed Mar 04 2009 - 06:00:58 CST)
- Equivalent Mouse Capabilities to Tracker CAVELib (Mon Feb 09 2009 - 07:06:26 CST)
Amrit Kalra
- Viewing Amber6 trajectory with VMD 1.8.1 (Mon Oct 20 2003 - 01:21:03 CDT)
Ana Celia Araujo Vila Verde
- RE: tcl variable withing variable name (Thu Apr 19 2007 - 10:29:43 CDT)
- RE: Calculate End-End distance for DCD (Tue Mar 13 2007 - 16:17:48 CDT)
- RE: Delete frames in a script (Tue Jan 30 2007 - 10:08:50 CST)
- RE: rotation to align (Fri Jan 19 2007 - 07:59:55 CST)
- script to load dcds from Replica Exchange simulations by Temperature (Mon Jan 15 2007 - 17:30:44 CST)
- RE: imposing period boundary conditions in a simulation with a crystal (Wed Sep 06 2006 - 08:31:59 CDT)
- imposing period boundary conditions in a simulation with a crystal (Tue Sep 05 2006 - 11:13:06 CDT)
- Re: problem with measure command (Fri Jun 23 2006 - 11:02:14 CDT)
- problem with measure command (Fri Jun 23 2006 - 10:22:49 CDT)
- the crystal structure of gold: questions about making the psf and about visualization in VMD; update (Tue May 23 2006 - 14:47:00 CDT)
- the crystal structure of gold: questions about making the psf and about visualization in VMD (Tue May 23 2006 - 11:36:54 CDT)
- RE: problem with script to get RMSD-solved (Tue Feb 21 2006 - 10:53:16 CST)
- RE: problem with script to get RMSD (Fri Feb 17 2006 - 14:10:10 CST)
- RE: problem with script to get RMSD (Fri Feb 17 2006 - 08:41:20 CST)
- RE: problem with script to get RMSD (Thu Feb 16 2006 - 15:49:23 CST)
- problem with script to get RMSD (Thu Feb 16 2006 - 13:31:28 CST)
- RE: printing to a file from a procedure to get RMSD (Thu Feb 02 2006 - 08:35:30 CST)
- printing to a file from a procedure to get RMSD (Tue Jan 31 2006 - 10:28:37 CST)
- psfgen error: MOLECULE DESTROYED BY FATAL ERROR (Tue Nov 22 2005 - 13:13:15 CST)
Ana Celia Vila Verde
- RE: a question about dcd files (Thu Feb 02 2006 - 08:32:35 CST)
- a question about dcd files (Wed Feb 01 2006 - 13:53:39 CST)
Ana Célia Vila Verde
- problem with density map obtained by volmap (Sun Sep 20 2009 - 08:01:12 CDT)
Ana Vila Verde
- Re: measure hbonds between protein and water - problem with periodic boundary conditions (Thu Apr 17 2008 - 05:54:50 CDT)
- measure hbonds between protein and water - problem with periodic boundary conditions (Thu Apr 17 2008 - 02:54:08 CDT)
Anand Kaushal
- python callback!!!! (Wed Jul 28 2004 - 16:19:15 CDT)
Ananyo Bandyopadhyay
- Creating a cuboid box to fit in atoms (Thu Sep 25 2008 - 13:29:15 CDT)
- Movie maker problem in VMD (Wed Sep 24 2008 - 11:11:14 CDT)
Anatoliy
- question about ionization (Wed Nov 07 2007 - 12:10:12 CST)
- question about water sphere script (Mon Nov 05 2007 - 11:21:54 CST)
andras.borosy_at_givaudan.com
- unique opportunity - 20% discount for the EuroQSAR 2006 (Tue Aug 15 2006 - 10:54:04 CDT)
- Periodic builder? (Tue Aug 08 2006 - 07:26:51 CDT)
Andre Farias de Moura
- Re: mpg image speed (Mon Apr 11 2005 - 09:40:46 CDT)
- drawing the edges of a non-rectangular box (Fri Mar 11 2005 - 06:17:46 CST)
- center of mass position (Tue Aug 24 2004 - 07:07:24 CDT)
Andrea Bernini
- H-bonds? (Wed Mar 05 1997 - 06:36:47 CST)
andrea carotti
- Atom sorting according to resid (Wed Oct 21 2009 - 10:16:33 CDT)
- CatDCD Desmond Support (Wed Oct 07 2009 - 10:31:53 CDT)
- SAS values for a residue (Wed Jul 27 2005 - 07:58:45 CDT)
- Re: Script for automated selection (Wed Jun 22 2005 - 03:28:54 CDT)
- Script for automated selection (Mon Jun 20 2005 - 09:38:51 CDT)
Andrea Cristiani
- Fixed number of solvatation water (Wed Apr 25 2007 - 04:56:41 CDT)
andrea spitaleri
- Re: silly rmsd script doesn' t work ... (Fri May 30 2008 - 08:28:40 CDT)
- silly rmsd script doesn' t work ... (Fri May 30 2008 - 07:17:16 CDT)
- Re: resolution screen in Linux (Mon Apr 28 2008 - 02:54:15 CDT)
- resolution screen in Linux (Thu Apr 24 2008 - 07:33:24 CDT)
- color by frame? (Mon May 07 2007 - 04:58:40 CDT)
- rmsf (Tue Sep 19 2006 - 10:40:15 CDT)
- select only border of the water box (Fri Aug 04 2006 - 04:41:00 CDT)
- Re: number of frames in pdb file? (Fri May 26 2006 - 03:01:41 CDT)
- rms and align strucs (Wed Apr 19 2006 - 06:05:50 CDT)
- contact map lig-pro (Wed Apr 19 2006 - 05:37:23 CDT)
- Re: dict command (Thu Apr 06 2006 - 02:43:21 CDT)
- dict command (Wed Apr 05 2006 - 09:44:50 CDT)
- find neighbour ligand-protein (Thu Mar 23 2006 - 08:53:40 CST)
- Re: VMD script (Tue Mar 14 2006 - 05:05:00 CST)
- Re: VMD script (Mon Mar 13 2006 - 04:19:55 CST)
- Re: tcl-reading files (Mon Feb 13 2006 - 08:42:49 CST)
- Re: vmd installation on the server (Tue Jan 31 2006 - 03:25:19 CST)
- vmd installation on the server (Mon Jan 30 2006 - 09:31:46 CST)
- contact map [Re: vmd-xplor and noe call ] (Thu Dec 15 2005 - 10:13:30 CST)
- vmd-xplor and noe call (Thu Dec 15 2005 - 05:16:58 CST)
- discriminate aromatic ring face (Mon Dec 05 2005 - 09:54:38 CST)
- Re: s-s bond in vmd not visualized (Mon Dec 05 2005 - 03:24:16 CST)
- Re: s-s bond in vmd not visualized (Tue Nov 29 2005 - 03:22:52 CST)
- Re: s-s bond in vmd not visualized (Wed Nov 23 2005 - 03:05:39 CST)
- s-s bond in vmd not visualized (Tue Nov 22 2005 - 07:03:52 CST)
- Re: calculate rmsd in a loop:feedback [sorry if you get it twice] (Fri Nov 18 2005 - 10:16:01 CST)
- Re: calculate rmsd in a loop:feedback [sorry if you get it twice] (Fri Nov 18 2005 - 05:31:21 CST)
- Re: calculate rmsd in a loop:feedback [sorry if you get it twice] (Fri Nov 18 2005 - 03:42:29 CST)
- Re: Réf. : calculate rmsd in a loop:feedback [sorry if you get it twice] (Thu Nov 17 2005 - 04:14:01 CST)
- calculate rmsd in a loop:feedback [sorry if you get it twice] (Thu Nov 17 2005 - 02:50:19 CST)
- increase size membrane (Fri Nov 04 2005 - 02:58:43 CST)
- Re: position of protein respect to membrane (Tue Sep 27 2005 - 04:00:31 CDT)
- Re: position of protein respect to membrane (Tue Sep 27 2005 - 03:41:35 CDT)
- position of protein respect to membrane (Mon Sep 26 2005 - 09:35:10 CDT)
Andrea.Cristiani_at_pharm.unige.ch
- Create a PSF (Fri Sep 21 2007 - 04:16:37 CDT)
Andreas Wagenmann
- Re: Frame creation (Fri Sep 25 2009 - 02:01:27 CDT)
- Frame creation (Thu Sep 24 2009 - 09:28:50 CDT)
Andrei A Golosov
- Re: electrostatic potential maps in vmd (Fri Mar 10 2006 - 12:17:50 CST)
- electrostatic potential maps in vmd (Fri Mar 10 2006 - 10:52:14 CST)
Andres Bynum
- Your Pharm4cy 0rder #3747312 (Sat Apr 21 2007 - 19:50:21 CDT)
Andres Morales N
- FW: Disulfide bonds (Tue Oct 13 2009 - 01:02:30 CDT)
- Disulfude bonds (Tue Oct 13 2009 - 01:00:39 CDT)
- Average structure and NamdEnergy (Thu Sep 17 2009 - 00:03:36 CDT)
- Average structure and NamdEnergy (Wed Sep 16 2009 - 14:27:23 CDT)
- get coordinates (Sat Sep 12 2009 - 12:05:35 CDT)
- RE: namd-l: Re: rmsd matrix (Thu Sep 03 2009 - 15:00:30 CDT)
- rmsd matrix (Thu Sep 03 2009 - 07:45:06 CDT)
- NAMDEnergy Plugin (Tue Jul 28 2009 - 00:34:43 CDT)
- NAMDEnergy (Wed Jun 10 2009 - 08:59:51 CDT)
- NAMDEnergy (Sun Jun 07 2009 - 15:23:35 CDT)
- NAMDEnergy (Sun Jun 07 2009 - 15:24:33 CDT)
- Energy (Wed Jun 03 2009 - 21:50:41 CDT)
- Align mistake (Tue May 19 2009 - 11:14:21 CDT)
- RE: Average strcuture (Tue May 19 2009 - 10:21:28 CDT)
- Average strcuture (Tue May 19 2009 - 08:51:23 CDT)
- Translate (Wed May 13 2009 - 22:25:22 CDT)
- Axes (Wed May 13 2009 - 08:42:45 CDT)
- Alignment (Mon May 11 2009 - 21:44:55 CDT)
- Using clustering tool (Fri Apr 24 2009 - 22:56:48 CDT)
- iTrajComp plugin. (Fri Apr 24 2009 - 22:23:45 CDT)
- RE: Load multiple files (Thu Feb 12 2009 - 08:59:39 CST)
- rmsd matrix (Tue Feb 03 2009 - 10:01:28 CST)
- rmsd matrix (Mon Feb 02 2009 - 10:59:50 CST)
- get a PDB file from DCD file (Tue Jan 27 2009 - 07:58:23 CST)
- (no subject) (Mon Jan 26 2009 - 14:37:40 CST)
Andres Palencia
- Re: duration of video mpeg (Mon Dec 04 2006 - 06:12:51 CST)
- Re: duration of video mpeg (Sun Dec 03 2006 - 13:07:28 CST)
- duration of video mpeg (Sat Dec 02 2006 - 11:39:04 CST)
- VMD installation problem (Fri Nov 10 2006 - 10:38:41 CST)
Andrew Dalke
- Re: translations with fixed and unfixed molecules (Thu Apr 15 1999 - 23:18:33 CDT)
- Re: moving molecules and getting the new positions (Tue Mar 30 1999 - 18:50:35 CST)
- Re: questions about MSMS and H-bonds (Fri Mar 05 1999 - 15:04:39 CST)
- Re: questions about MSMS and H-bonds (Fri Mar 05 1999 - 14:54:07 CST)
- Re: extracting distances (Thu Dec 10 1998 - 20:06:25 CST)
- convex hull and VMD (Mon Sep 28 1998 - 17:31:10 CDT)
- Re: Transparent graphics (Fri Sep 18 1998 - 12:32:30 CDT)
- Re: VMDTECH: CONECTing atoms (Mon Aug 24 1998 - 15:01:05 CDT)
- Re: calculation of RMS values (Wed Aug 19 1998 - 13:49:12 CDT)
- VMDTECH: CONECTing atoms (Fri Aug 14 1998 - 17:16:26 CDT)
- Re: The pdb format of vmd (Thu Jan 22 1998 - 12:02:32 CST)
- protein surface and volume code (Wed Jan 14 1998 - 22:17:10 CST)
- Re: VMD on a DEC? (Wed Jan 14 1998 - 22:07:30 CST)
- Re: problem with getting started. (Sun Dec 21 1997 - 11:47:00 CST)
- Re: unable to animate alanine.dcd (Mon Dec 08 1997 - 13:34:06 CST)
- Re: unable to animate alanine.dcd (Sun Dec 07 1997 - 23:16:55 CST)
- Re: tcl script for writinging modified pdb co-ordinates (Thu Dec 04 1997 - 18:41:03 CST)
- Re: drawing spheres (Wed Nov 19 1997 - 08:03:35 CST)
- Re: VMD only read 58 frames from XYZ file (Thu Nov 06 1997 - 04:24:54 CST)
- Re: MSMS in VMD (Wed Oct 15 1997 - 00:30:42 CDT)
- Re: VMD & PoV files (Wed Oct 08 1997 - 12:12:54 CDT)
- Re: reading minimalised pdb files (Tue Oct 07 1997 - 04:34:33 CDT)
- Exporting VMD images to Alias (Thu Jul 24 1997 - 14:28:40 CDT)
- residue-residue distances and atom selection bug (Tue Jun 10 1997 - 13:05:11 CDT)
- [VMDTECH] Schedule Change (Fri Apr 18 1997 - 18:07:35 CDT)
- [VMDTECH] Smoothing Animations (Sun Apr 13 1997 - 01:28:43 CDT)
- Re: Segmentation error! (Wed Apr 09 1997 - 10:46:36 CDT)
- [VMDTECH] Tracing Atom Picks (Fri Apr 04 1997 - 18:27:57 CST)
- [VMDTECH] Morphing (Fri Mar 28 1997 - 12:14:17 CST)
- Two (small) VMD 1.2b1 bugs (Wed Mar 26 1997 - 13:55:16 CST)
- Re: [VMDTECH] VMD 1.2b1 is now available (Tue Mar 25 1997 - 03:03:32 CST)
- [VMDTECH] VMD 1.2b1 is now available (Tue Mar 25 1997 - 02:09:57 CST)
- [VMDTECH] Drawing Methods, Part II (Fri Mar 14 1997 - 16:40:47 CST)
- Re: Wavefront obj output (Wed Mar 12 1997 - 15:19:48 CST)
- [VMDTECH] Drawing Methods, Part I (Fri Mar 07 1997 - 16:22:57 CST)
- VMD now uses Tcl 7.6 (Wed Mar 05 1997 - 22:47:42 CST)
- Re: why does VMD quit automatically? (Wed Mar 05 1997 - 11:50:27 CST)
- Re: H-bonds? (Wed Mar 05 1997 - 09:37:55 CST)
- Re: why does VMD quit automatically? (Wed Mar 05 1997 - 08:58:34 CST)
- [VMDTECH] Secondary Structure (Fri Feb 28 1997 - 16:38:21 CST)
- [VMDTECH] Small things (Fri Feb 21 1997 - 13:02:34 CST)
- VMD workshop material (Tue Feb 18 1997 - 17:43:13 CST)
- [VMDTECH] Making Movies (Fri Feb 14 1997 - 12:56:27 CST)
- [VMDTECH] RMSD and best-fit alignments (Fri Feb 07 1997 - 14:37:24 CST)
- [Tech] Customizing VMD: hot keys and popup menus (Fri Jan 31 1997 - 12:10:02 CST)
- Re: textures in VMD and rayshade scripts (Mon Jan 27 1997 - 15:42:15 CST)
- Re: [Tech] Colors in VMD (Fri Jan 24 1997 - 15:24:38 CST)
- [Tech] Colors in VMD (Fri Jan 24 1997 - 11:44:45 CST)
- Special Christmas binary (Fri Dec 20 1996 - 04:01:38 CST)
- Welcome to VMD-L! (Thu Dec 19 1996 - 11:40:38 CST)
- Re: Save State Fails (Thu Jul 23 2009 - 13:11:46 CDT)
- Re: ResdueType and hydrophobicity scale (Wed Jul 16 2008 - 05:45:13 CDT)
- Re: What's the main reason of the structure or function of a protein? (Thu Mar 06 2008 - 00:25:03 CST)
- Re: What's the main reason of the structure or function of a protein? (Wed Mar 05 2008 - 16:32:42 CST)
- Re: VMD languaje information (Tue Mar 04 2008 - 14:44:16 CST)
- Re: VMD and Cyclotides... (Tue Apr 05 2005 - 02:59:29 CDT)
- Re: displaying double, triple bonds (Tue Mar 29 2005 - 17:05:33 CST)
- Re: atom index starting at 0 (Fri Jan 07 2005 - 17:36:50 CST)
- Re: Tube representation of alpha carbons (Wed Dec 08 2004 - 01:53:05 CST)
- Re: Tube representation of alpha carbons (Tue Dec 07 2004 - 19:46:58 CST)
- Re: Elliptic molecules (Thu Jul 15 2004 - 15:35:47 CDT)
- Re: Van der Waal's radii of atoms (Wed Jun 02 2004 - 23:21:30 CDT)
- Re: attempting to source a script (Thu Feb 12 2004 - 08:41:46 CST)
- Re: "nucleic" selection (Wed Nov 12 2003 - 13:29:15 CST)
- Re: Python's future in VMD (Tue Sep 30 2003 - 12:19:46 CDT)
- Re: question about selection (Thu Sep 04 2003 - 18:57:00 CDT)
- Re: simple question (Tue Sep 02 2003 - 19:40:49 CDT)
- Re: Some improvements for 1.8.2 (Fri Jul 25 2003 - 20:18:57 CDT)
- Re: selection (Fri Jul 25 2003 - 18:22:25 CDT)
- Re: conect2psf (Wed Jul 24 2002 - 04:51:04 CDT)
- conect2psf (Tue Jul 23 2002 - 23:35:06 CDT)
- Re: Regular Expression problem with $ (Tue Apr 30 2002 - 20:38:10 CDT)
- Re: Which drawing method is used in the picture? (Tue Apr 09 2002 - 15:04:19 CDT)
- Re: boolean operators in graphics (Thu Mar 14 2002 - 22:32:38 CST)
- Re: Superimposing two frames (Tue Oct 30 2001 - 16:12:03 CST)
- Re: rasmol script (Tue Mar 20 2001 - 22:45:49 CST)
- Re: Spheres with OpenGL (was Re: linux graphics adapters?) (Sun Jul 16 2000 - 20:54:55 CDT)
- Re: VMD and GRASP Qu.II (Thu Jun 15 2000 - 04:23:39 CDT)
Andrew Gormanly
- RPM spec file (Tue Oct 17 2006 - 08:03:45 CDT)
Andrew Hall
- GRASP files (Wed Jun 14 2000 - 10:17:27 CDT)
- Remote control of VMD on SGI-NT mixture (Wed Apr 26 2000 - 11:11:50 CDT)
- MSMS help (Mon Apr 03 2000 - 15:04:30 CDT)
Andrew Huang
- Bond lengths from PDB and PSF (Mon May 12 2008 - 16:36:18 CDT)
Andrew James Bennett
- VMD not loading in Suse 11.1 (Fri Jan 23 2009 - 05:43:05 CST)
Andrew Jewett
- request ability to append in CatDCD (and NAMD) (Fri Aug 08 2008 - 14:15:46 CDT)
Andrew Watts
- (no subject) (Fri Apr 23 2004 - 15:26:37 CDT)
aneamtu_at_iasi.mednet.ro
- E-D stereo glasses (Sat Mar 03 2007 - 04:44:51 CST)
aneesh cna
- Space distribution functions (Wed Dec 24 2008 - 23:08:03 CST)
- atom selection (Wed Dec 03 2008 - 05:32:57 CST)
- algorithm for finding center of mass of the side chains in the protein (Fri Aug 29 2008 - 07:26:26 CDT)
- Re: Percentage Helicity calculation in VMD (Fri Feb 01 2008 - 03:18:53 CST)
- Percentage Helicity calculation in VMD (Thu Jan 31 2008 - 22:54:53 CST)
- problem with timeline plugin (Fri Jan 25 2008 - 00:12:17 CST)
- problem with superimposing two proteins (Thu Jan 10 2008 - 05:33:21 CST)
- Re: Hydrophobicity plots in VMD (Mon Nov 26 2007 - 23:31:43 CST)
- Re: Hydrophobicity plots in VMD (Mon Nov 26 2007 - 04:09:44 CST)
- Re: Hydrophobicity plots in VMD (Sat Nov 24 2007 - 22:50:51 CST)
- Hydrophobicity plots in VMD (Sat Nov 24 2007 - 00:33:38 CST)
- problem with loading trajectories in timline plugin (Thu Nov 22 2007 - 00:24:00 CST)
- stride binaries for windows XP OS (Mon Nov 12 2007 - 23:21:34 CST)
- problem with colouring the surface with electroststic potential (Mon Nov 12 2007 - 23:15:25 CST)
- problem with timeline plugin (Mon Sep 17 2007 - 05:33:29 CDT)
- problem regarding timeline (Mon Sep 10 2007 - 10:54:01 CDT)
- problem regarding stride (Mon Aug 13 2007 - 05:31:32 CDT)
- problem regarding stride (Mon Aug 13 2007 - 00:58:09 CDT)
angel
- Load (Thu Aug 17 2006 - 13:14:06 CDT)
- Compiling problem (Mon Jun 19 2006 - 14:23:04 CDT)
- Compilation propblem (Mon Jun 19 2006 - 12:26:52 CDT)
- Compilation (Wed May 24 2006 - 17:44:39 CDT)
- Plugin compilation problem (Thu May 18 2006 - 17:41:16 CDT)
- Plugin compilation (Fri May 12 2006 - 16:19:47 CDT)
- Compiling problem (Wed Apr 26 2006 - 14:59:31 CDT)
- Compiling problem (Fri Mar 31 2006 - 15:57:47 CST)
- Some errors (Mon Mar 27 2006 - 18:51:51 CST)
angel_at_cbuc.cl
- haptics device "novint falcon" (Mon Dec 15 2008 - 09:13:31 CST)
- paratool dont recognize gaussian output (Fri Dec 12 2008 - 10:10:13 CST)
Angelo R. Rossi
- Re:vmd, linux & dri (Tue Feb 13 2001 - 08:20:42 CST)
Angelo Rossi
- Re: Need Guidance with pbctools (Sun Jul 12 2009 - 08:02:21 CDT)
- Need Guidance with pbctools (Sat Jul 11 2009 - 13:47:11 CDT)
angelo vargas
- vmd customization (Thu Oct 28 2004 - 03:57:25 CDT)
Anil Kumar
- VMD movie from XYZ coordinate if file has two type of atoms (Sun Dec 09 2007 - 22:12:58 CST)
- Re: VMD movie from XYZ coordinate if file has two type of atoms] (Wed Dec 12 2007 - 01:48:06 CST)
- Re: VMD movie from XYZ coordinate if file has two type of atoms] (Tue Dec 11 2007 - 21:00:58 CST)
- VMD movie from XYZ coordinate if file has two type of atoms] (Tue Dec 11 2007 - 04:20:07 CST)
- VMD movie from XYZ coordinate if file has two type of atoms (Mon Dec 10 2007 - 22:43:49 CST)
Anirban Ghosh
- How to generate an index (.ind) file? (Fri Dec 05 2008 - 00:07:49 CST)
- Re: use configure.options (Mon Nov 17 2008 - 22:34:14 CST)
- Re: Re: (Tue Nov 11 2008 - 22:27:15 CST)
- Re: Re: (Tue Nov 11 2008 - 21:59:01 CST)
- (no subject) (Tue Nov 11 2008 - 07:17:04 CST)
- CG Map Tool Syntax Error (Wed Nov 05 2008 - 04:48:32 CST)
- Re: PSFGEN problem with URA residues (Mon Oct 20 2008 - 08:30:49 CDT)
- Re: Catdcd? (Mon Oct 20 2008 - 06:31:25 CDT)
- PSFGEN problem with URA residues (Mon Oct 20 2008 - 06:27:06 CDT)
- Re: Problems after installation (ubuntu 8.04) (Sat Oct 04 2008 - 13:04:09 CDT)
- Restarting a simulation $ Langevin (Fri Sep 19 2008 - 07:17:12 CDT)
- How to ionize a Shape Based CG Model? (Mon Sep 15 2008 - 08:09:07 CDT)
Anna Aagaard
- Which drawing method is used in the picture? (Tue Apr 09 2002 - 14:40:17 CDT)
Anna Karawajczyk
- new coordinates (Thu Oct 06 2005 - 02:57:55 CDT)
- new coordinates (Thu Oct 06 2005 - 02:35:09 CDT)
- small figures (Fri Aug 19 2005 - 07:47:30 CDT)
Anna Modzelewska
- Re: tcl-reading files (Mon Feb 13 2006 - 08:52:19 CST)
- tcl-reading files (Mon Feb 13 2006 - 07:35:26 CST)
- Re: secondary structure's display - problem (Thu Jan 12 2006 - 10:21:07 CST)
- Re: secondary structure's display - problem (Thu Jan 12 2006 - 06:23:56 CST)
- Re: secondary structure's display - problem (Wed Jan 11 2006 - 09:03:28 CST)
- secondary structure's display - problem (Tue Jan 10 2006 - 10:29:43 CST)
- error when solvating protein/vmd1.8.4a22 (Mon Nov 07 2005 - 07:31:59 CST)
- saving macros (Wed Nov 02 2005 - 05:35:09 CST)
- Re: autoimd on windows (Wed Jun 22 2005 - 11:51:22 CDT)
- Re: autoimd on windows (Wed Jun 22 2005 - 05:29:52 CDT)
- autoimd on windows (Mon Jun 20 2005 - 06:40:29 CDT)
- autoimd error (Wed Jun 15 2005 - 09:35:01 CDT)
- Re: problem in autoionize (Thu Sep 30 2004 - 04:18:38 CDT)
- stereo with GForce video board (Thu Jul 29 2004 - 04:20:31 CDT)
- periodic box lines (Mon Dec 01 2003 - 06:50:05 CST)
Annabelle Posey
- You can save 80% (Thu Apr 17 2008 - 17:58:17 CDT)
annalisa_at_biotec.tu-dresden.de
- combine.tcl (Tue Nov 21 2006 - 15:06:50 CST)
Anneta Tzampazi
- Problem with creating psf file from structure made by inorganic builder (Fri Oct 03 2008 - 04:43:19 CDT)
- Concerning protein rotation (Mon Sep 08 2008 - 05:22:40 CDT)
- Inquiry concerning the plugin "Inorganic builder" (Mon Jun 23 2008 - 05:23:46 CDT)
anshudx_at_indiatimes.com
- Info regarding residue based CG simulation (Thu May 15 2008 - 13:04:11 CDT)
Anshul Shah
- Re: Amber prmtop/inpcrd files (Mon Jul 28 2003 - 17:17:29 CDT)
- Amber prmtop/inpcrd files (Mon Jul 28 2003 - 15:45:05 CDT)
Anthony Cruz
- Re: Analysis (Thu Mar 23 2006 - 14:01:45 CST)
- Big trr trajectory (Thu Mar 23 2006 - 13:27:17 CST)
- Re: Analysis (Thu Mar 23 2006 - 10:20:13 CST)
- Re: Analysis (Mon Mar 20 2006 - 12:33:53 CST)
- Analysis (Wed Mar 08 2006 - 13:37:21 CST)
- Re: selection of atoms on INSIDE protein (Mon Mar 06 2006 - 11:26:12 CST)
- Re: selection of atoms on INSIDE protein (Mon Mar 06 2006 - 10:20:08 CST)
- representation using COM (Fri Feb 24 2006 - 16:53:27 CST)
- RMSD or RMSF value (Tue Dec 20 2005 - 13:17:32 CST)
- Re: APBS plugin (Thu Dec 08 2005 - 14:07:37 CST)
- APBS plugin (Wed Dec 07 2005 - 14:06:06 CST)
- Protein volume and cavityes (Wed Dec 07 2005 - 13:01:53 CST)
- macros and variables (Thu Dec 01 2005 - 15:09:07 CST)
Anthony Ivetac
- Re: Labelling Coordinates (not Atoms) (Wed Jun 18 2008 - 21:32:03 CDT)
- Labelling Coordinates (not Atoms) (Wed Jun 18 2008 - 17:52:09 CDT)
- Re: Rendering Labels with Tachyon (Thu Apr 24 2008 - 17:43:08 CDT)
- Re: Rendering Labels with Tachyon (Thu Apr 24 2008 - 11:58:52 CDT)
- Rendering Labels with Tachyon (Wed Apr 23 2008 - 18:18:33 CDT)
- PPMTOMPEG Quality (Thu Apr 17 2008 - 14:40:15 CDT)
- Drawing Vectors (Tue Nov 16 2004 - 08:53:35 CST)
- Tachyon Internal Rendering (Mon Jul 26 2004 - 08:34:05 CDT)
- Visualising Helix Dipole Moment (Mon Jul 19 2004 - 05:25:54 CDT)
- Non-protein Multiple-Frame File (Mon May 24 2004 - 06:44:54 CDT)
Anthony Samiotakis
- Ramachandran plot tcl script (Sat Feb 23 2008 - 15:54:50 CST)
Anton Arkhipov
- Re: CG bead definition (Mon Aug 31 2009 - 23:24:05 CDT)
- Re: residue based CG model (Fri Jul 10 2009 - 10:47:00 CDT)
- Re: Satellite tobacco mosaic virus images making by VMD (Tue May 05 2009 - 12:48:10 CDT)
- Re: Can the CG model built from VMD be used as an Input of NAMD,GROMACS and any other MD program? (Tue Apr 28 2009 - 10:34:04 CDT)
- Re: selection syntax (Mon Mar 30 2009 - 09:03:47 CDT)
- Re: how to make a mivie by VMD (Wed Mar 25 2009 - 18:00:10 CDT)
- Re: SBCG membrane (Wed Dec 24 2008 - 15:01:38 CST)
- Re: CG bead definition (Mon Nov 24 2008 - 18:36:23 CST)
- Re: CG bead definition (Mon Nov 24 2008 - 16:43:28 CST)
- Re: CG Map Tool Syntax Error (Wed Nov 05 2008 - 16:16:59 CST)
- Re: Extract parameters of Shape-based Coarse Graining model from AA simulation (Wed Oct 22 2008 - 10:28:02 CDT)
- Re: volmap (Tue Oct 21 2008 - 10:43:40 CDT)
- Re: How to render an image like this one with VMD? (Thu Sep 25 2008 - 11:29:20 CDT)
- Re: viewing an embryo (Tue Sep 23 2008 - 15:03:01 CDT)
- Re: viewing an embryo (Tue Sep 23 2008 - 14:37:15 CDT)
- Re: How to ionize a Shape Based CG Model? (Mon Sep 15 2008 - 10:15:23 CDT)
- Re: How to ionize a Shape Based CG Model? (Mon Sep 15 2008 - 09:10:04 CDT)
Anton B. Guliaev
- Potential map display in VMD (GRASP) (Wed Sep 28 2005 - 18:33:59 CDT)
Anuradha Mittal
- Re: RMSD (Wed Apr 12 2006 - 09:24:45 CDT)
- RMSD (Tue Apr 11 2006 - 13:47:06 CDT)
- solvation (Wed Mar 22 2006 - 17:38:38 CST)
- contact map (Wed Jun 01 2005 - 14:56:06 CDT)
- hbond (Mon Apr 11 2005 - 12:24:05 CDT)
- rmsd (Tue Apr 05 2005 - 11:24:28 CDT)
apeyser_at_newssun.med.miami.edu
- Re: User colors and povray (Wed Feb 23 2005 - 15:45:26 CST)
- User colors and povray (Tue Feb 22 2005 - 13:34:47 CST)
- vmd on ppc (G4) (Mon Feb 23 2004 - 14:07:25 CST)
- Compiling vmd for ppc linux (Fri Feb 20 2004 - 13:46:50 CST)
- Compiling vmd for ppc linux (Fri Feb 20 2004 - 13:55:41 CST)
Arent, Michael
- Some newbie questions (Fri Apr 20 2001 - 08:44:27 CDT)
Arian Arian
- Input File Format (Wed Oct 21 2009 - 14:03:01 CDT)
Arieana Moore
- problems with Autoimd on mac os x ( panther ) (Thu Apr 29 2004 - 19:02:09 CDT)
Ariel Mitchell
- The affordable watch alternative (Fri May 02 2008 - 20:35:12 CDT)
Arienti, Marco UTRC
- more on lammps and VMD coordinates (Tue Feb 26 2008 - 11:18:37 CST)
Arindam Ganguly
- Replica exchange molecular dynamics (REMD) (Tue Mar 20 2007 - 21:22:15 CDT)
- Re: making movie from GROMACS trajectory (Thu Aug 17 2006 - 15:43:43 CDT)
- making movie from GROMACS trajectory (Wed Aug 09 2006 - 18:05:36 CDT)
Armen Nalian
- Re: custom db in Multiseq (Fri May 18 2007 - 12:29:41 CDT)
- custom db in Multiseq (Thu May 17 2007 - 18:48:01 CDT)
- RE: trouble with autopsf (Mon Oct 24 2005 - 16:56:41 CDT)
- RE: trouble with autopsf (Sun Oct 23 2005 - 23:36:09 CDT)
- APBS error (Wed Feb 16 2005 - 18:58:54 CST)
Arnab Chakrabarty
- Re: Unable to see VDW , CPK representations (Sat Feb 16 2008 - 17:51:04 CST)
- Unable to see VDW , CPK representations (Fri Feb 15 2008 - 16:25:23 CST)
Arnab Mukherjee
- Re: vmd crashes on startup (Fri Jul 06 2007 - 15:24:42 CDT)
- vmd crashes on startup (Wed Jul 04 2007 - 16:11:36 CDT)
Arneh Babakhani
- Re: Calculating the Tilt Angle of a non-helical peptide (Wed Mar 19 2008 - 21:37:45 CDT)
- Calculating the Tilt Angle of a non-helical peptide (Wed Mar 19 2008 - 20:24:38 CDT)
- Re: Render Snapshot from the Tcl console (jpg gif format) (Sun Dec 02 2007 - 23:24:35 CST)
- Re: Render Snapshot from the Tcl console (jpg gif format) (Sun Dec 02 2007 - 20:57:41 CST)
- Re: Render Snapshot from the Tcl console (jpg gif format) (Sun Dec 02 2007 - 20:45:38 CST)
- Re: Render Snapshot from the Tcl console (jpg gif format) (Sun Dec 02 2007 - 18:31:17 CST)
- Render Snapshot from the Tcl console (jpg gif format) (Sun Dec 02 2007 - 15:02:52 CST)
- Re: peptide builder (Fri Sep 07 2007 - 10:50:23 CDT)
- Re: Changing the Index values of a molecule (the differenece between gro and pdb files) (Wed Aug 15 2007 - 13:06:17 CDT)
- Changing the Index values of a molecule (the differenece between gro and pdb files) (Wed Aug 15 2007 - 12:39:08 CDT)
- Running a vmd tcl script in the background (Mon Aug 13 2007 - 19:05:20 CDT)
- Re: Deleting bonds based on length (Fri Jul 27 2007 - 07:58:41 CDT)
- Deleting bonds based on length (Thu Jul 26 2007 - 23:41:11 CDT)
- Recognized atom types by VMD PDB reader (Fri Jul 20 2007 - 12:52:48 CDT)
- Re: Reading a pdbqt file (generated from AutoDock) (Fri Jul 20 2007 - 12:35:24 CDT)
- Re: Reading a pdbqt file (generated from AutoDock) (Fri Jul 20 2007 - 09:19:00 CDT)
- Reading a pdbqt file (generated from AutoDock) (Thu Jul 19 2007 - 18:01:01 CDT)
- Re: Making a selection from another selection (Tue Jul 17 2007 - 20:41:29 CDT)
- Re: Making a selection from another selection (Tue Jul 17 2007 - 20:35:19 CDT)
- Making a selection from another selection (Tue Jul 17 2007 - 20:02:49 CDT)
- Re: Divide by Zero Error , but can't find the zero! (Thu Jul 05 2007 - 20:03:45 CDT)
- Divide by Zero Error , but can't find the zero! (Thu Jul 05 2007 - 14:57:03 CDT)
- Re: Using VMD just to plot some coordinates from a mathematical/geometrical model (Sat Jun 23 2007 - 10:29:11 CDT)
- Re: Using VMD just to plot some coordinates from a mathematical/geometrical model (Fri Jun 22 2007 - 20:04:40 CDT)
- Using VMD just to plot some coordinates from a mathematical/geometrical model (Fri Jun 22 2007 - 17:51:35 CDT)
- Re: Loading up PDB files in absolute coordinates (Fri Jun 22 2007 - 15:04:24 CDT)
- Re: Loading up PDB files in absolute coordinates (Fri Jun 22 2007 - 14:38:42 CDT)
- Re: Loading up PDB files in absolute coordinates (Fri Jun 22 2007 - 14:26:12 CDT)
- Re: Loading up PDB files in absolute coordinates (Fri Jun 22 2007 - 13:50:59 CDT)
- Loading up PDB files in absolute coordinates (Fri Jun 22 2007 - 13:10:06 CDT)
- Re: Measuring hbonds between selections from different molecules (Tue Jun 05 2007 - 20:57:11 CDT)
- Measuring hbonds between selections from different molecules (Tue Jun 05 2007 - 20:13:15 CDT)
- Move labels (Wed May 23 2007 - 16:21:33 CDT)
- Re: Error while running scripts: terminate called after throwing an instance of 'std::bad_alloc' (Mon Feb 05 2007 - 10:59:04 CST)
- Re: Error while running scripts: terminate called after throwing an instance of 'std::bad_alloc' (Sun Feb 04 2007 - 21:58:19 CST)
- Re: Error while running scripts: terminate called after throwing an instance of 'std::bad_alloc' (Fri Feb 02 2007 - 20:04:29 CST)
- Error while running scripts: terminate called after throwing an instance of 'std::bad_alloc' (Fri Feb 02 2007 - 16:16:04 CST)
- Re: Segmentation fault when trying to load GROMACS trajectories (Mon Jun 12 2006 - 14:10:19 CDT)
- Segmentation fault when trying to load GROMACS trajectories (Mon Jun 12 2006 - 11:47:06 CDT)
- Re: Launching Tk Console (Wed May 10 2006 - 19:00:57 CDT)
- Launching Tk Console (Wed May 10 2006 - 11:23:42 CDT)
- Secondary Structure along a trajectory (Wed Apr 26 2006 - 18:44:21 CDT)
Artem Mamonov
- Memory leak using "moveby" command inside a loop (Wed Apr 14 2004 - 21:34:20 CDT)
Arturas
- solid color clipping plane - render with "scratches" (Tue Oct 25 2005 - 04:49:45 CDT)
- VMD shows bad structure with 'line' type (Fri Apr 02 2004 - 06:27:38 CST)
- Re: configure do nothing in Linux (???) - thank you ! (Thu Apr 01 2004 - 03:23:39 CST)
- configure do nothing (Linux) (Wed Mar 31 2004 - 09:22:54 CST)
- configure do nothing in Linux(???) (Wed Mar 31 2004 - 09:27:36 CST)
Arturas Ziemys
- Fast routines for distance evaluations using PBC. (Fri May 11 2007 - 11:52:49 CDT)
- polyethylene topology (Tue Dec 05 2006 - 12:05:57 CST)
- gofr (Wed Oct 11 2006 - 13:22:54 CDT)
- Recentering the box on target molecule and wraping (Mon Sep 11 2006 - 10:39:55 CDT)
- charmm toppology : internal coordinates (Tue Aug 22 2006 - 16:39:00 CDT)
- Manipulation on loaded MSMS surface (Tue Aug 15 2006 - 16:19:18 CDT)
- loading trajectory file (Mon Aug 07 2006 - 11:38:34 CDT)
Arturo Fernandez
- You can save 80% (Fri Apr 25 2008 - 05:58:21 CDT)
Arun Krishnan
- Re: Changing Beta values for each frame of a trajectory.. (Wed Jun 20 2007 - 23:39:21 CDT)
- Changing Beta values for each frame of a trajectory.. (Wed Jun 20 2007 - 22:08:17 CDT)
asimplefunguy_at_netscape.net
- nvidia drivers and 64bit OS VMD/PYMOL (Mon Oct 24 2005 - 09:10:23 CDT)
Assa Sittner
- viewing .brix maps (Sun Mar 13 2005 - 04:58:03 CST)
Athanassios Stavrakoudis
- Re: Calculating system net charge with tcl in VMD (Mon Apr 27 2009 - 05:12:18 CDT)
Atila Iamarino
- removing water molecules (Mon Jun 04 2007 - 13:21:33 CDT)
- Re: Saving mol2 file (Wed Apr 18 2007 - 10:50:57 CDT)
- Saving mol2 file (Mon Apr 16 2007 - 12:36:00 CDT)
Audrey Salazar
- Questions abt VMD plugins (Fri Sep 14 2007 - 08:59:48 CDT)
- Re: Installing VMD to work with MSMS (Tue Aug 14 2007 - 13:42:35 CDT)
- Installing VMD to work with MSMS (Tue Aug 14 2007 - 11:07:38 CDT)
- Archived Spam in the VMD-L Mailing List (Tue Aug 14 2007 - 10:00:30 CDT)
- Re: Automatic PSF Builder Help (Mon Aug 06 2007 - 14:47:08 CDT)
- Re: Automatic PSF Builder Help (Mon Aug 06 2007 - 14:27:52 CDT)
- Automatic PSF Builder Help (Mon Aug 06 2007 - 11:16:12 CDT)
Aurelie.DeLuca_at_sanofi-aventis.com
- RMSD between two structures without the same number of atoms (Fri Apr 18 2008 - 08:08:39 CDT)
Aurore Zyto
- Cartoon representation for large molecules (Wed Dec 31 2003 - 15:43:11 CST)
Aurum Bai
- Is it the bug of VMD1.87_partool? (Wed Nov 18 2009 - 06:29:56 CST)
- How to compile the source of VMD1.8.7 on linux system (Fri Aug 07 2009 - 00:10:40 CDT)
- Why the win_version of vmd1.86 can not change to python interpreter? (Sat Aug 01 2009 - 08:21:06 CDT)
Austin Small
- RE: Can't execvp vmd_SOLARISX86 (Tue Sep 25 2007 - 16:14:16 CDT)
- Can't execvp vmd_SOLARISX86 (Sun Sep 23 2007 - 23:42:50 CDT)
- vmdbasename: Undefined variable (Sat Sep 08 2007 - 12:13:41 CDT)
AustinSmall_at_comcast.net
- VMD plugin error src/webpdbplugin.c (Sun Aug 12 2007 - 18:08:17 CDT)
- Re: gmake invalid option --c install (Sat Aug 11 2007 - 12:52:32 CDT)
- gmake invalid option --c install (Sat Aug 11 2007 - 10:47:45 CDT)
- VMD plugins error (Mon Aug 06 2007 - 22:18:52 CDT)
- (no subject) (Thu Jul 26 2007 - 16:06:23 CDT)
- installation errors with src/hesstrans_wrap.C (Thu Jul 26 2007 - 16:16:39 CDT)
Avell Diroll
- Re: Hydrophobicity plots in VMD (Tue Nov 27 2007 - 03:22:21 CST)
- Re: Moving volume data with molecule (Thu Mar 29 2007 - 11:59:01 CDT)
- Moving volume data with molecule (Thu Mar 29 2007 - 10:05:40 CDT)
- Re: read the pdb file using VMD (Wed Mar 07 2007 - 17:39:38 CST)
- Re: Isosurface rendering (Thu Feb 22 2007 - 08:11:28 CST)
- Re: Isosurface rendering (Wed Feb 21 2007 - 06:42:05 CST)
- Isosurface rendering (Tue Feb 20 2007 - 08:52:35 CST)
avl211_at_lehigh.edu
- Problem With Psfgen again (Fri Jul 17 2009 - 13:53:49 CDT)
- Problems with psfgen (Thu Jul 16 2009 - 16:06:31 CDT)
Axel Berg
- questions about MSMS and H-bonds (Fri Mar 05 1999 - 06:38:48 CST)
- MSMS in VMD (Tue Oct 14 1997 - 07:58:11 CDT)
Axel Kohlmeyer
- Re: aquire coordinates from the points of the solvent representation (Fri Nov 20 2009 - 13:23:11 CST)
- Re: solvate error (Thu Nov 19 2009 - 12:29:08 CST)
- Re: xzy format and ResType (Tue Nov 17 2009 - 14:40:46 CST)
- Re: polymer bead spring model file format (Tue Nov 17 2009 - 12:40:49 CST)
- Re: PBCTools-problem getting unitcell parameters (Thu Nov 12 2009 - 20:25:30 CST)
- Re: problems displaying newcartoon representation (Thu Nov 12 2009 - 12:09:16 CST)
- Re: bad_alloc error (Wed Nov 11 2009 - 10:43:34 CST)
- plugin for reading (and writing) trajectories with a varying number of atoms (Fri Nov 06 2009 - 14:51:02 CST)
- Re: running under Shell using VMD (Tue Nov 03 2009 - 21:43:33 CST)
- Re: RBCG bead diameter (Sat Oct 31 2009 - 14:42:05 CDT)
- Re: using NAMD with SPC water (Sat Oct 31 2009 - 14:23:13 CDT)
- Re: namd-l: abnormal water surface after nvt and npt for POPC membrane (Wed Oct 28 2009 - 10:55:16 CDT)
- Re: Unable to find Stride output file: /usr/tmp/... (Tue Oct 27 2009 - 13:18:17 CDT)
- Re: Tachyon Rendering (Tue Oct 27 2009 - 11:23:48 CDT)
- Re: using NAMD with SPC water (Mon Oct 26 2009 - 10:42:13 CDT)
- Re: using NAMD with SPC water (Mon Oct 26 2009 - 10:08:08 CDT)
- Re: using NAMD with SPC water (Mon Oct 26 2009 - 08:48:24 CDT)
- Re: VMD and Intel X3100 GPU (Sat Oct 24 2009 - 17:28:33 CDT)
- Re: Input File Format (Wed Oct 21 2009 - 14:52:05 CDT)
- Re: bond connectivity not displayed in VMD (Wed Oct 21 2009 - 12:58:15 CDT)
- Re: questions (Wed Oct 21 2009 - 13:03:57 CDT)
- Re: Atom sorting according to resid (Wed Oct 21 2009 - 11:21:58 CDT)
- Re: Translating an atom along a specific direction and saving the pdb files (Tue Oct 20 2009 - 10:38:17 CDT)
- Re: X server is not capable of displaying double RGB images with a Z buffer (Tue Oct 20 2009 - 10:40:59 CDT)
- Re: NAMD can't malloc() error (Mon Oct 19 2009 - 13:29:20 CDT)
- Re: Arbitrary values of isosurface (Mon Oct 19 2009 - 08:58:17 CDT)
- Re: paratool: unable to load optimized geometry (Mon Oct 19 2009 - 08:51:46 CDT)
- Re: Calculate Free Volume? (Mon Oct 19 2009 - 08:59:32 CDT)
- Re: Re: Water Sphere Solvation (Sun Oct 18 2009 - 09:25:30 CDT)
- Re: Question about running tcl/tk script without graphic interface (vmd option -dispdev none ...) (Fri Oct 16 2009 - 18:25:07 CDT)
- Re: Problems with selecting atoms for representations (Tue Oct 13 2009 - 11:29:09 CDT)
- Re: writing gromacs .trr format with nonorthorhomic cells (Tue Oct 13 2009 - 08:59:59 CDT)
- Re: colour residues (Mon Oct 12 2009 - 19:05:13 CDT)
- Re: covalently bonded atoms (Mon Oct 12 2009 - 12:41:31 CDT)
- Re: format of pdb file (Mon Oct 12 2009 - 10:10:06 CDT)
- Re: catdcd (Mon Oct 12 2009 - 10:43:42 CDT)
- Re: Load struture form memory (Mon Oct 12 2009 - 08:35:22 CDT)
- Re: Lipid Membrane (Mon Oct 12 2009 - 08:39:20 CDT)
- RE: how to display the periodic box in VMD (Thu Oct 08 2009 - 14:30:27 CDT)
- Re: how to display the periodic box in VMD (Wed Oct 07 2009 - 18:39:55 CDT)
- Re: Bond representation of coarse grained molecules (Wed Oct 07 2009 - 09:39:42 CDT)
- Re: How to translate my diffused protein back to COM? (Mon Oct 05 2009 - 20:31:13 CDT)
- Re: Tracking atoms automatically (Mon Oct 05 2009 - 13:24:17 CDT)
- Re: distance of two center of mass (Mon Oct 05 2009 - 06:04:33 CDT)
- Re: Breaking a trajectory into separate files with tcl (Mon Oct 05 2009 - 01:41:49 CDT)
- Re: Problems with Stride (Fri Oct 02 2009 - 13:06:45 CDT)
- Re: Reading output of quantum packages and plotting orbitals (Fri Oct 02 2009 - 11:52:09 CDT)
- Re: how to load an external file to user field (Thu Oct 01 2009 - 16:12:41 CDT)
- Re: Reading output of quantum packages and plotting orbitals (Wed Sep 30 2009 - 17:38:26 CDT)
- Re: H_Bonds (Mon Sep 28 2009 - 14:16:12 CDT)
- Re: text timer in vmd animations (Mon Sep 28 2009 - 10:40:38 CDT)
- Re: Return value of a vector (Mon Sep 28 2009 - 09:35:25 CDT)
- Re: user field (Mon Sep 28 2009 - 09:28:03 CDT)
- Re: text timer in vmd animations (Mon Sep 28 2009 - 09:30:19 CDT)
- Re: ERROR) Error reading bond information. (Fri Sep 25 2009 - 12:16:30 CDT)
- Re: ERROR) Error reading bond information. (Fri Sep 25 2009 - 10:02:52 CDT)
- Re: ERROR) Error reading bond information. (Fri Sep 25 2009 - 09:11:49 CDT)
- Re: ERROR) Error reading bond information. (Fri Sep 25 2009 - 07:55:47 CDT)
- Re: Frame creation (Fri Sep 25 2009 - 05:14:03 CDT)
- Re: Velocity Auto Correlation (Thu Sep 24 2009 - 21:49:01 CDT)
- Re: Velocity Auto Correlation (Thu Sep 24 2009 - 09:30:33 CDT)
- Re: Frame creation (Thu Sep 24 2009 - 10:13:16 CDT)
- Re: atom selection (Mon Sep 21 2009 - 14:22:08 CDT)
- Re: Resize window from TCL (Mon Sep 21 2009 - 13:08:14 CDT)
- Re: automated loading (Mon Sep 21 2009 - 11:18:17 CDT)
- Re: problem with density map obtained by volmap (Sun Sep 20 2009 - 13:44:03 CDT)
- Re: Question about PSF generation (Sun Sep 20 2009 - 13:34:12 CDT)
- Re: Velocity Auto Correlation (Sat Sep 19 2009 - 10:14:22 CDT)
- Re: water molecules around proteins (Sat Sep 19 2009 - 09:55:57 CDT)
- Re: Velocity Auto Correlation (Fri Sep 18 2009 - 16:18:44 CDT)
- Re: Velocity Auto Correlation (Fri Sep 18 2009 - 15:36:45 CDT)
- Re: Reading new amber prmtop formats. (Wed Sep 16 2009 - 13:28:37 CDT)
- Re: PSF for AMBER top + crd files (Tue Sep 15 2009 - 17:10:32 CDT)
- Re: Segmentation fault on linux Fedora 11 (Mon Sep 14 2009 - 14:45:02 CDT)
- Re: get coordinates (Sat Sep 12 2009 - 13:01:35 CDT)
- Re: psf for CNT? (Wed Sep 09 2009 - 10:46:49 CDT)
- Re: VMD on Suse 11.1 w/ NVIDIA dies. (Wed Sep 09 2009 - 09:17:55 CDT)
- Re: Bond representation of coarse grained molecules (Sat Sep 05 2009 - 14:45:59 CDT)
- Re: VMD on Suse 11.1 w/ NVIDIA dies. (Sat Sep 05 2009 - 14:33:34 CDT)
- Re: Script error (Tue Sep 01 2009 - 12:55:26 CDT)
- Re: User field (Fri Aug 28 2009 - 16:14:00 CDT)
- Re: viewing MOs (Fri Aug 28 2009 - 10:29:57 CDT)
- Re: tinkerxyz (Tue Aug 25 2009 - 21:21:28 CDT)
- Re: problem with 1.8.7 installation (Tue Aug 25 2009 - 06:43:51 CDT)
- Re: Color bar (Thu Aug 20 2009 - 17:28:26 CDT)
- Re: Pyhton Mode (Thu Aug 20 2009 - 08:10:51 CDT)
- Re: Render command not executed (Wed Aug 19 2009 - 04:30:36 CDT)
- Re: Turn off the autobond feature in VMD (Wed Aug 12 2009 - 09:40:08 CDT)
- Re: Periodic Bonding (Wed Aug 12 2009 - 09:42:00 CDT)
- Re: Why the win_version of vmd1.86 can not change to python interpreter? (Sat Aug 01 2009 - 09:30:12 CDT)
- Re: vmd Linux 64 (Fri Jul 31 2009 - 07:50:20 CDT)
- Re: visualization problem (Fri Jul 31 2009 - 07:44:29 CDT)
- Re: Stripping out H20 (Sun Jul 26 2009 - 20:09:45 CDT)
- Re: File to benchmark a new GPU system (Sun Jul 26 2009 - 20:07:37 CDT)
- Re: PDB COORDINATES (Sun Jul 26 2009 - 19:59:55 CDT)
- Re: Stripping out H20 (Sun Jul 26 2009 - 18:47:33 CDT)
- Re: File to benchmark a new GPU system (Sun Jul 26 2009 - 18:22:59 CDT)
- Re: question about atomselect and periodic condition (Fri Jul 24 2009 - 09:17:13 CDT)
- Re: time-averaged RMSD per residue (Fri Jul 24 2009 - 09:19:52 CDT)
- Re: Problem: VMD 1.8.7 beta 5 does not launch on AIX (Fri Jul 24 2009 - 09:22:09 CDT)
- Re: drawing bond for coarse grained model (Thu Jul 23 2009 - 14:06:53 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer (Thu Jul 23 2009 - 12:29:49 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer (Thu Jul 23 2009 - 11:23:34 CDT)
- Re: Disable the set output (Thu Jul 23 2009 - 07:45:34 CDT)
- Re: error using Molecule.save() (vmd python) (Tue Jul 21 2009 - 08:43:21 CDT)
- Re: IMD interface for VASP (Mon Jul 20 2009 - 19:03:45 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer (Mon Jul 20 2009 - 15:43:56 CDT)
- Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer (Mon Jul 20 2009 - 11:36:28 CDT)
- Re: VMD 1.8.7 installation problem (Mon Jul 20 2009 - 08:49:00 CDT)
- Re: File conversion for from Amber to Charmm (Mon Jul 20 2009 - 08:54:41 CDT)
- Re: Re PSF file generation (Mon Jul 20 2009 - 08:49:33 CDT)
- Re: Problem With Psfgen again (Fri Jul 17 2009 - 14:37:13 CDT)
- Re: File conversion for from Amber to Charmm (Fri Jul 17 2009 - 10:14:24 CDT)
- Re: error after changing of PYTHONPATH variable (Fri Jul 17 2009 - 09:16:22 CDT)
- Re: error after changing of PYTHONPATH variable (Fri Jul 17 2009 - 08:22:13 CDT)
- Re: File conversion for from Amber to Charmm (Fri Jul 17 2009 - 07:23:35 CDT)
- Re: Problems with psfgen (Thu Jul 16 2009 - 17:30:59 CDT)
- Re: make movie w/ VMD in SUSE environment (Thu Jul 16 2009 - 11:40:03 CDT)
- Re: A problem on PBC (Thu Jul 16 2009 - 11:56:57 CDT)
- Re: ied and gypython (Thu Jul 16 2009 - 09:22:39 CDT)
- Re: python and vmd (Wed Jul 15 2009 - 07:46:20 CDT)
- Re: getting other variables out of LAMMPS ascii dump files (Tue Jul 14 2009 - 18:00:35 CDT)
- Re: getting other variables out of LAMMPS ascii dump files (Mon Jul 13 2009 - 14:21:03 CDT)
- Re: How to make a selection in atomselect using an element in a list? (Wed Jul 08 2009 - 11:17:14 CDT)
- Re: namd-l: Re: Hardware for NAMD / VMD machine (Mon Jul 06 2009 - 16:46:40 CDT)
- Re: NAMDenergy: problems on changing VMD version/platform (Sun Jul 05 2009 - 13:58:50 CDT)
- Re: NAMDenergy: problems on changing VMD version/platform (Sat Jul 04 2009 - 11:54:50 CDT)
- Re: namd-l: Hardware for NAMD / VMD machine (Fri Jul 03 2009 - 11:56:08 CDT)
- Re: Curious about analytical capabilities of VMD (Fri Jul 03 2009 - 11:04:53 CDT)
- Re: Manunlly Assign Secondary Structure (May Not Be Realistic) (Thu Jul 02 2009 - 14:42:30 CDT)
- Re: superimposing proteins based on a few residues (Wed Jul 01 2009 - 17:13:25 CDT)
- Re: Coloring atoms by a general scalar (Wed Jul 01 2009 - 08:12:52 CDT)
- Re: Some VMD questions (Tue Jun 30 2009 - 13:56:02 CDT)
- Re: Coloring atoms by a general scalar (Tue Jun 30 2009 - 12:53:26 CDT)
- Re: Funny tcl/tk script behavior.... (Tue Jun 30 2009 - 09:48:45 CDT)
- Re: atom name can not exceed four characters in pdb and psf? (Mon Jun 29 2009 - 22:32:22 CDT)
- GPGPU Programming summer school at University of Tennessee, Aug 10-14. (Mon Jun 29 2009 - 14:44:15 CDT)
- Re: running vmd on computer node (Mon Jun 29 2009 - 13:46:51 CDT)
- Re: Curious about analytical capabilities of VMD (Mon Jun 29 2009 - 08:51:01 CDT)
- Re: Curious about analytical capabilities of VMD (Fri Jun 26 2009 - 07:09:06 CDT)
- Re: Rejecting plugin... (Wed Jun 24 2009 - 14:30:15 CDT)
- Re: vmd error message in Fedora 11 (Wed Jun 24 2009 - 12:07:24 CDT)
- bigdcd v3 available. testers needed. (Wed Jun 24 2009 - 09:07:14 CDT)
- Re: alignment (Fri Jun 19 2009 - 10:56:09 CDT)
- Re: "Re: ABINIT plugin ready for testing: can read GEO and DEN files. (Thu Jun 18 2009 - 11:13:59 CDT)
- Re: Re: ABINIT plugin ready for testing: can read GEO and DEN files. (Wed Jun 17 2009 - 12:01:30 CDT)
- Re: Re: ABINIT plugin ready for testing: can read GEO and DEN files. (Tue Jun 16 2009 - 22:59:20 CDT)
- Re: Re: ABINIT plugin ready for testing: can read GEO and DEN files. (Tue Jun 16 2009 - 07:31:03 CDT)
- Re: "Save coordinates..." silently overwrites existing files... (Mon Jun 15 2009 - 11:29:10 CDT)
- Re: Memory allocation problem (Mon Jun 15 2009 - 10:00:02 CDT)
- Re: ABINIT plugin ready for testing: can read GEO and DEN files. (Mon Jun 15 2009 - 10:18:34 CDT)
- Re: Ho to save exactly the screen structure? (Mon Jun 15 2009 - 10:20:28 CDT)
- Re: vmdnumpy for IED... (Sun Jun 14 2009 - 18:23:41 CDT)
- Re: Ho to save exactly the screen structure? (Sun Jun 14 2009 - 16:58:32 CDT)
- RE: Re: [lammps-users] LAMMPS to VMD: lmp2vmd tool (Sat Jun 13 2009 - 17:00:27 CDT)
- Re: Tcl commands and X11 (Fri Jun 12 2009 - 13:26:59 CDT)
- Re: FW: Unable to render electrostatic potential cube files with most non-HF densities (Thu Jun 11 2009 - 09:19:21 CDT)
- Re: Transparency settings (Wed Jun 10 2009 - 09:38:57 CDT)
- RE: Re: [lammps-users] LAMMPS to VMD: lmp2vmd tool (Wed Jun 10 2009 - 08:36:44 CDT)
- Re: plugin: can I load volumetric data as frames (i.e. timesteps)? (Wed Jun 10 2009 - 08:16:58 CDT)
- Re: disulphide bond formation (Fri Jun 05 2009 - 10:45:12 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file (Fri Jun 05 2009 - 11:09:59 CDT)
- debugging tool for atomselect (Thu Jun 04 2009 - 17:05:10 CDT)
- Re: Energy (Wed Jun 03 2009 - 22:29:45 CDT)
- Re: Memory Problem with tcl/tk script...(2) (Wed Jun 03 2009 - 13:57:40 CDT)
- Re: vmd 1.8.7 - problems loading vmd state file (Wed Jun 03 2009 - 08:16:06 CDT)
- Re: adding atoms to empty molecules (Tue Jun 02 2009 - 09:22:43 CDT)
- Re: Memory Problem with tcl/tk script... (Tue Jun 02 2009 - 09:27:22 CDT)
- Re: Macbook and VMD Tk windows (Fri May 29 2009 - 08:07:21 CDT)
- Re: VMD crash (Thu May 28 2009 - 19:46:33 CDT)
- Re: VMD crash (Thu May 28 2009 - 19:05:48 CDT)
- Re: [lammps-users] LAMMPS to VMD: lmp2vmd tool (Thu May 28 2009 - 10:31:42 CDT)
- Re: problem with dispdev (Wed May 27 2009 - 16:20:37 CDT)
- Re: main window missing? (Wed May 27 2009 - 16:01:33 CDT)
- Re: Isosurface and Fieldlines Not rendered in colour (Tue May 26 2009 - 08:44:49 CDT)
- Re: default colors (Mon May 25 2009 - 16:10:47 CDT)
- bigdcd are related issues. was: Re: VMD 1.8.7 beta 3 posted for download... (Mon May 25 2009 - 11:42:59 CDT)
- Re: Plugin: molfile_plugin_t filename_extension; problem and bug... (Mon May 25 2009 - 09:52:04 CDT)
- Re: Re: abinit plugin for VMD not yet tried? (Mon May 25 2009 - 10:05:30 CDT)
- Re: VMD 1.8.7 beta 3 posted for download... (Sun May 24 2009 - 19:52:41 CDT)
- Re: How to compute excluded volume using volmap? (Sun May 24 2009 - 14:32:20 CDT)
- Re: VMD crashes in VolumeSlice representation (Sun May 24 2009 - 13:49:41 CDT)
- Re: "Determine file type" list is far too long... (Sun May 24 2009 - 11:40:33 CDT)
- Re: Problem in loading data (Sun May 24 2009 - 11:08:09 CDT)
- Re: "Determine file type" list is far too long... (Sun May 24 2009 - 08:52:35 CDT)
- Re: Re: abinit plugin for VMD not yet tried? (Sun May 24 2009 - 08:38:11 CDT)
- Re: Question3 about introducing variables in "mol selection..." (Fri May 22 2009 - 17:09:08 CDT)
- Re: Question2 about introducing variables in "mol selection..." (Fri May 22 2009 - 16:10:24 CDT)
- Re: Question about introducing variables in "mol selection..." (Fri May 22 2009 - 11:34:03 CDT)
- Re: pdb file generated not readable by tleap (Fri May 22 2009 - 10:08:06 CDT)
- Re: abinit plugin for VMD not yet tried? (Fri May 22 2009 - 10:05:14 CDT)
- Re: bonds in .psf file (Thu May 21 2009 - 12:48:40 CDT)
- Re: angles and dihedrals in .psf file (Thu May 21 2009 - 11:28:15 CDT)
- Re: Adding two separate pdb files: Lipid Bilayer's with Protein's (Wed May 20 2009 - 16:34:45 CDT)
- Re: pdb file generated not readable by tleap (Wed May 20 2009 - 16:28:54 CDT)
- Re: Distance between COM for 2 chains for each frame of trajectory (Wed May 20 2009 - 14:05:27 CDT)
- Re: Distance between COM for 2 chains for each frame of trajectory (Wed May 20 2009 - 12:09:39 CDT)
- Re: how to load a state from the command line (Wed May 20 2009 - 09:51:47 CDT)
- Re: default colors (Wed May 20 2009 - 09:38:40 CDT)
- Re: VMD 1.8.7b3 and desktop effects on Fedora 10 (Wed May 20 2009 - 08:43:16 CDT)
- Re: Request for change in gaussian cube reader (Tue May 19 2009 - 14:32:10 CDT)
- Re: VMD 1.8.7 beta 3 posted for download... (Mon May 18 2009 - 20:29:44 CDT)
- Re: VMD as a python module (Mon May 18 2009 - 09:27:16 CDT)
- Re: vmd / python / f10 (Sun May 17 2009 - 08:37:47 CDT)
- Re: namdenergy missing for -dispdev none (vmd 1.8.6) (Fri May 15 2009 - 13:27:22 CDT)
- Re: Change requested in lammps plugin for VMD (Fri May 15 2009 - 12:32:48 CDT)
- Re: adding bonds with the mouse and writing psf (Fri May 15 2009 - 10:28:59 CDT)
- Re: How to color atom by charge (Thu May 14 2009 - 07:01:32 CDT)
- Re: Color problem. (Wed May 13 2009 - 17:45:44 CDT)
- Re: Can bonds radius be controlled by tcl command? (Wed May 13 2009 - 17:55:17 CDT)
- Re: Sphere representaion with radius from pdb field "occupancy" or "temp. fac" (Wed May 13 2009 - 05:56:32 CDT)
- Re: How to compute excluded volume using volmap? (Tue May 12 2009 - 08:47:43 CDT)
- Re: selecting waters (Mon May 11 2009 - 13:11:50 CDT)
- Re: calculate charges of the binding site residues with psfgen (Sun May 10 2009 - 07:00:29 CDT)
- Re: Thiol on gold (Fri May 08 2009 - 10:17:49 CDT)
- Re: vmd-read data from lammps (Thu May 07 2009 - 21:22:51 CDT)
- Re: Display not updated when using move() from Python in VMD 1.8.6 (Thu May 07 2009 - 10:45:00 CDT)
- Re: Display not updated when using move() from Python in VMD 1.8.6 (Thu May 07 2009 - 09:44:06 CDT)
- Re: Display not updated when using move() from Python in VMD 1.8.6 (Wed May 06 2009 - 18:18:54 CDT)
- Re: VMD 1.8.7beta1 doesn't close OpenGL window (Tue May 05 2009 - 08:26:03 CDT)
- Re: selecting ribose atoms? (Fri May 01 2009 - 19:48:34 CDT)
- Re: Size of a protein (Wed Apr 29 2009 - 16:50:25 CDT)
- Re: hydrogen bonds tcl script (Tue Apr 28 2009 - 10:17:26 CDT)
- Re: Can the CG model built from VMD be used as an Input of NAMD,GROMACS and any other MD program? (Tue Apr 28 2009 - 08:32:24 CDT)
- Re: Manipulating dcd using script in VMD (Tue Apr 28 2009 - 08:24:04 CDT)
- Re: graphics for publication (Fri Apr 24 2009 - 11:26:58 CDT)
- Re: Error processing bonds (Fri Apr 24 2009 - 08:42:34 CDT)
- Re: local packing density around a chemical group (say, a methyl group or a side chain) (Thu Apr 23 2009 - 11:27:20 CDT)
- Re: Select atoms using coordinates (Thu Apr 23 2009 - 08:48:57 CDT)
- Re: installed plugin won't show up next time (Thu Apr 23 2009 - 08:45:51 CDT)
- Re: sys.argv, python and VMD (Wed Apr 22 2009 - 10:42:58 CDT)
- Re: Secondary Structure Depiction (Tue Apr 21 2009 - 14:07:41 CDT)
- Re: Secondary Structure Depiction (Tue Apr 21 2009 - 11:23:10 CDT)
- Re: pbctools on alpha version (Sat Apr 18 2009 - 10:11:47 CDT)
- Re: Possible bug in vmd 1.8.7 alpha? (Sat Apr 18 2009 - 10:15:24 CDT)
- Re: display all frames simultaneously (Thu Apr 16 2009 - 22:11:12 CDT)
- Re: Problem in finding the HBonds (Wed Apr 15 2009 - 07:56:52 CDT)
- Re: (Tue Apr 14 2009 - 07:25:54 CDT)
- Re: install plugin: problems with vmd_install_extension (Fri Apr 10 2009 - 10:13:57 CDT)
- Re: install plugin: problems with vmd_install_extension (Fri Apr 10 2009 - 09:10:13 CDT)
- Re: within, used with pbcwrap (Fri Apr 10 2009 - 09:03:36 CDT)
- Re: about TkConsole (Tue Apr 07 2009 - 21:32:40 CDT)
- Re: about TkConsole (Tue Apr 07 2009 - 12:58:48 CDT)
- Re: OS X intel binary problem (Sun Apr 05 2009 - 09:48:37 CDT)
- Re: too many bonds (Sun Apr 05 2009 - 08:57:59 CDT)
- Re: OS X intel binary problem (Sun Apr 05 2009 - 09:05:07 CDT)
- Re: Problem with autoionize ? (Thu Apr 02 2009 - 11:46:33 CDT)
- Re: Problem with autoionize ? (Thu Apr 02 2009 - 09:25:33 CDT)
- Re: How to add heme to dowser plugin? (Mon Mar 30 2009 - 20:24:24 CDT)
- Re: openGL library (Thu Mar 26 2009 - 20:20:31 CDT)
- Re: howto select stain reveal map (Thu Mar 26 2009 - 06:41:07 CDT)
- Re: how to block psfgen warning messages (Wed Mar 25 2009 - 17:17:19 CDT)
- Re: merging atomselection (Wed Mar 25 2009 - 17:20:45 CDT)
- Re: Command line argument (Wed Mar 25 2009 - 10:57:22 CDT)
- Re: vmd_plot (Wed Mar 25 2009 - 07:47:14 CDT)
- Re: building VMD on LINUX (Tue Mar 17 2009 - 08:58:38 CDT)
- Re: rlwrap bug in Ubuntu (Sun Mar 15 2009 - 15:14:45 CDT)
- Re: rlwrap bug in Ubuntu (Sun Mar 15 2009 - 09:32:49 CDT)
- Re: regarding draw_arrow.tcl (Fri Mar 13 2009 - 09:51:23 CDT)
- Re: regarding draw_arrow.tcl (Wed Mar 11 2009 - 11:30:30 CDT)
- Re: How to use " segment " in tcl script. (Wed Mar 11 2009 - 10:15:05 CDT)
- Re: obj export (Tue Mar 10 2009 - 10:25:07 CDT)
- Re: obj export (Tue Mar 10 2009 - 09:24:01 CDT)
- Re: charmm binary ele. pot. (Mon Mar 09 2009 - 13:59:25 CDT)
- <please insert a decent subject here next time, thanks> (Mon Mar 09 2009 - 12:08:49 CDT)
- Re: charmm binary ele. pot. (Mon Mar 09 2009 - 11:57:21 CDT)
- Re: correlation (Sun Mar 08 2009 - 10:33:03 CDT)
- Re: problem with Dowser (Sat Mar 07 2009 - 20:18:42 CST)
- Re: Display issue on VMD for Linux (Wed Mar 04 2009 - 21:55:04 CST)
- Re: Problem in IMD with Compiled VMD (Wed Mar 04 2009 - 08:55:24 CST)
- Re: OpenGL Window (Wed Mar 04 2009 - 07:55:24 CST)
- Re: select atoms (Mon Mar 02 2009 - 20:24:55 CST)
- Re: Help: Installation Problem (Sat Feb 28 2009 - 07:45:27 CST)
- Re: wrong bonds during loading pdb file(protein plus lipids) (Fri Feb 27 2009 - 22:01:19 CST)
- Re: wrong bonds during loading pdb file(protein plus lipids) (Fri Feb 27 2009 - 20:47:32 CST)
- Re: (Fri Feb 27 2009 - 14:48:42 CST)
- Re: Displaying local water molecules throughout trajectory (Thu Feb 26 2009 - 15:20:50 CST)
- Re: Help: Installation Problem (Thu Feb 26 2009 - 10:57:30 CST)
- Re: embed VMD in web page (Wed Feb 25 2009 - 12:03:34 CST)
- Re: question about "measure dihed" with COM points (Tue Feb 24 2009 - 19:51:15 CST)
- Re: Adding a Water Box (Mon Feb 23 2009 - 19:00:55 CST)
- Re: Can you show me an example of the .xyz file that is used to calculate the IR spectrum (Mon Feb 23 2009 - 14:46:18 CST)
- Re: passing arguments to a vmd script which is executed using play or source (Mon Feb 23 2009 - 10:20:55 CST)
- Re: passing arguments to a vmd script which is executed using play or source (Mon Feb 23 2009 - 09:15:44 CST)
- Re: passing arguments to a vmd script which is executed using play or source (Mon Feb 23 2009 - 09:08:58 CST)
- Re: a way to create a nice image (Sun Feb 22 2009 - 11:16:17 CST)
- Re: a way to create a nice image (Sat Feb 21 2009 - 11:03:44 CST)
- Re: transparent background (Fri Feb 20 2009 - 14:39:17 CST)
- Re: converting trajectory files with catdcd in command line (Fri Feb 20 2009 - 08:02:38 CST)
- Re: "pbcwithin" keyword (Thu Feb 19 2009 - 11:00:48 CST)
- Re: change cylinder surface properties (Mon Feb 16 2009 - 18:29:11 CST)
- Re: error messages "*** glibc detected *** free(): invalid pointer" (Mon Feb 16 2009 - 12:26:19 CST)
- Re: installation (Sun Feb 15 2009 - 12:46:34 CST)
- Re: problem (Wed Feb 11 2009 - 09:01:42 CST)
- Re: Flow Fields (Tue Feb 10 2009 - 16:53:19 CST)
- Re: How to specify processors for running VMD on a cluster? (Tue Feb 10 2009 - 15:35:46 CST)
- Re: How to specify processors for running VMD on a cluster? (Tue Feb 10 2009 - 12:24:58 CST)
- Re: multiplot : integration of undrawing command (?) (Sun Feb 08 2009 - 23:48:49 CST)
- Re: Progress Bar for the Elapsed Time: rendering problem (Thu Feb 05 2009 - 17:23:40 CST)
- Re: trajectory path script (Thu Feb 05 2009 - 11:39:06 CST)
- Re: property iterate over a range (representation / draw style) (Tue Feb 03 2009 - 12:10:49 CST)
- Re: deleting specific residues or atoms (Tue Feb 03 2009 - 10:55:28 CST)
- Re: scriptable way to add hydrogens (Sat Jan 31 2009 - 17:35:53 CST)
- Re: how to set color parameters differently for different molecules (Thu Jan 29 2009 - 20:35:35 CST)
- Re: VMD & NAMD atoms naming convention? (Tue Jan 27 2009 - 08:35:34 CST)
- Re: get a PDB file from DCD file (Tue Jan 27 2009 - 08:42:18 CST)
- Re: Re: How to change title of display window? (Mon Jan 26 2009 - 12:13:13 CST)
- Re: Re: How to change title of display window? (Sun Jan 25 2009 - 21:08:18 CST)
- Re: how to set color parameters differently for different molecules (Sun Jan 25 2009 - 13:18:10 CST)
- Re: accessing bonds angles dihedrals etc lists after PSF file is read into VMD (Fri Jan 23 2009 - 16:20:30 CST)
- Re: VMD not loading in Suse 11.1 (Fri Jan 23 2009 - 09:04:18 CST)
- Re: Breaking Bonds in VMD (Tue Jan 20 2009 - 17:21:16 CST)
- Re: Test builds of VMD 1.8.7 using Tcl/Tk 8.5.x... (Tue Jan 20 2009 - 17:31:19 CST)
- Re: Problems with tcl/tk 8.5 (Tue Jan 20 2009 - 08:53:02 CST)
- Re: VMD plugin for Desmond (Tue Jan 20 2009 - 08:58:24 CST)
- Re: VMD window transparent in Opensuse 11.1 ATI system (Tue Jan 20 2009 - 08:56:12 CST)
- Re: Fwd: Tcl script (Tue Jan 20 2009 - 08:49:21 CST)
- Re: Download the newest version of VMD (Mon Jan 19 2009 - 10:09:33 CST)
- Re: XYZ trajectory with different atom types? (Fri Jan 16 2009 - 14:00:00 CST)
- Re: Data fields in vmd (Thu Jan 15 2009 - 14:10:26 CST)
- Re: Understanding topology files? (Thu Jan 15 2009 - 14:06:16 CST)
- Re: Data fields in vmd (Wed Jan 14 2009 - 14:56:10 CST)
- Re: updating DCD frames in python (Wed Jan 14 2009 - 11:11:45 CST)
- Re: center of mass (Mon Jan 12 2009 - 14:37:05 CST)
- Re: 4x4 trafo matrices to get "homo-two-protein-complex" (Mon Jan 12 2009 - 14:32:27 CST)
- Re: VMD for Linux (Mon Jan 12 2009 - 09:11:00 CST)
- Re: 4x4 trafo matrices to get "homo-two-protein-complex" (Mon Jan 12 2009 - 09:05:41 CST)
- Re: : about complexing protein and ligand! (Mon Jan 12 2009 - 08:54:21 CST)
- Re: odd render problems with Vista (Sun Jan 11 2009 - 14:37:10 CST)
- Re: odd render problems with Vista (Sun Jan 11 2009 - 14:27:58 CST)
- Re: putting a set of selections in a list or an array (Sun Jan 11 2009 - 13:53:41 CST)
- Re: cube file question (Fri Jan 09 2009 - 08:23:16 CST)
- Re: Functional Groups (Fri Jan 09 2009 - 08:16:12 CST)
- Re: measure rmsf - command (step argument) (Wed Jan 07 2009 - 10:44:18 CST)
- Re: Large dcd file (Tue Jan 06 2009 - 19:04:46 CST)
- Re: Large dcd file (Tue Jan 06 2009 - 19:01:25 CST)
- Re: eliminate atoms from psf and pdb files (Tue Jan 06 2009 - 12:33:37 CST)
- Re: changing bond color (Tue Jan 06 2009 - 12:30:19 CST)
- Re: tcl scripts in parallel in VMD? (Tue Jan 06 2009 - 10:06:25 CST)
- Re: list of all the file type keywords for "mol load"? (Mon Jan 05 2009 - 10:44:03 CST)
- Re: I need a bid trajectory please!!! (Fri Dec 26 2008 - 14:20:38 CST)
- Re: Space distribution functions (Fri Dec 26 2008 - 14:15:58 CST)
- Re: beta column format in PDB (Wed Dec 24 2008 - 15:53:27 CST)
- Re: beta column format in PDB (Wed Dec 24 2008 - 14:33:53 CST)
- Re: CHARMM to AMBER trajectory conversion (Fri Dec 19 2008 - 09:56:01 CST)
- Re: QM Geometry optimization (Wed Dec 17 2008 - 13:53:09 CST)
- Re: QM Geometry optimization (Wed Dec 17 2008 - 09:23:33 CST)
- Re: the exact definition of the keyword "radius" of the atom selection (Sat Dec 13 2008 - 16:37:11 CST)
- Re: To find the residues on each side of the protein (Wed Dec 03 2008 - 05:17:48 CST)
- Re: memory leak found (Tue Dec 02 2008 - 12:58:25 CST)
- Re: Rotation of molecules (Tue Dec 02 2008 - 11:29:25 CST)
- Re: memory leak found (Tue Dec 02 2008 - 11:23:28 CST)
- Re: transparent or translucent backgrond for images (Sun Nov 30 2008 - 05:37:01 CST)
- Re: how to prevent view reset on data load (Sun Nov 30 2008 - 05:46:45 CST)
- Re: tcl fscript or Removeing protein flucutation (Wed Nov 26 2008 - 10:24:18 CST)
- Re: Other color scales than the predefined ones? (Wed Nov 26 2008 - 10:21:02 CST)
- Re: Movie of a xyz trajectory (Wed Nov 26 2008 - 05:12:34 CST)
- Re: view only parts of the loaded volumetric data (Fri Nov 21 2008 - 05:01:21 CST)
- Re: Loading .vel file in VMD (Fri Nov 21 2008 - 03:45:39 CST)
- Re: question (Thu Nov 20 2008 - 11:55:59 CST)
- Re: running a script (Thu Nov 20 2008 - 11:54:38 CST)
- Re: representation ColorID in Tcl (Wed Nov 19 2008 - 12:24:51 CST)
- Re: General question about the memory usage of VMD (Mon Nov 17 2008 - 14:31:02 CST)
- Re: how to run catdcd from within a proc (Mon Nov 17 2008 - 12:48:52 CST)
- Re: wavefront and VMD (Mon Nov 17 2008 - 09:12:55 CST)
- Re: movie (Sun Nov 09 2008 - 11:56:35 CST)
- Re: Sequentially numbering atom names in pdb file (Wed Nov 05 2008 - 16:24:57 CST)
- Re: [Fwd: problems with manipulating control switches on VMS main menu] (Fri Oct 31 2008 - 18:05:46 CDT)
- Re: Per-frame 'graphics'? (Fri Oct 31 2008 - 16:59:44 CDT)
- Re: reading multiples molecules. (Wed Oct 29 2008 - 11:07:55 CDT)
- Re: reading multiples molecules. (Wed Oct 29 2008 - 10:14:50 CDT)
- Re: Render surface colored by electrostatic potential (Tue Oct 28 2008 - 14:03:47 CDT)
- Re: move matrix definition (Tue Oct 28 2008 - 12:14:13 CDT)
- Re: using the beta and occupancy columns as state variables (Tue Oct 28 2008 - 09:17:03 CDT)
- Re: reading multiples molecules. (Tue Oct 28 2008 - 09:20:54 CDT)
- Re: A question about the namd energy plugin of VMD (Sun Oct 26 2008 - 13:12:06 CDT)
- Re: PBCtools verison 2.3: how to obtain it? (Fri Oct 24 2008 - 10:32:16 CDT)
- Re: advanced selections (or explicit pair list) for measure gofr ? (Fri Oct 24 2008 - 10:31:13 CDT)
- Re: independent stereo display (Thu Oct 23 2008 - 14:15:13 CDT)
- Re: dcd format (Wed Oct 22 2008 - 15:59:08 CDT)
- Re: dcd format (Wed Oct 22 2008 - 14:17:22 CDT)
- RE: dcd format (Wed Oct 22 2008 - 12:49:56 CDT)
- Re: fitting structure to map generated by Volmap (Wed Oct 22 2008 - 10:38:15 CDT)
- Re: fitting structure to map generated by Volmap (Tue Oct 21 2008 - 15:53:07 CDT)
- Re: fitting structure to map generated by Volmap (Tue Oct 21 2008 - 14:53:57 CDT)
- Re: fitting structure to map generated by Volmap (Tue Oct 21 2008 - 09:01:22 CDT)
- Re: feature request (Sun Oct 19 2008 - 13:26:42 CDT)
- Re: Catdcd? (Thu Oct 16 2008 - 13:23:14 CDT)
- RE: Problem in text mode (Thu Oct 16 2008 - 09:53:50 CDT)
- Re: saving trajectories from the command line (Thu Oct 16 2008 - 09:11:17 CDT)
- Re: velocity calculations (Wed Oct 15 2008 - 11:20:33 CDT)
- Re: Deleting frames / molecules does not free up memory! (Tue Oct 14 2008 - 11:13:11 CDT)
- Re: why atomselection "protein" can not choose all the protein atoms with different alternate locations? (Mon Oct 13 2008 - 18:23:35 CDT)
- Re: How to specify color based on dihedral angle? (Mon Oct 13 2008 - 14:25:11 CDT)
- Re: CHARMM TO AMBER FORMAT CONVERT (Sun Oct 12 2008 - 19:26:18 CDT)
- Re: intersurf in vmd (Sat Oct 11 2008 - 18:44:10 CDT)
- Re: STRIDE analysis of beta-sheets in VMD (Fri Oct 10 2008 - 16:50:59 CDT)
- Re: Density distribution plots (Fri Oct 10 2008 - 16:26:20 CDT)
- Re: Question about the Main Menu window display (Fri Oct 10 2008 - 14:47:28 CDT)
- Re: loading python (Fri Oct 10 2008 - 11:37:28 CDT)
- Re: loading python (Thu Oct 09 2008 - 16:31:13 CDT)
- Re: Density distribution plots (Thu Oct 09 2008 - 14:14:57 CDT)
- Re: Fw: VMD 1.8.6 for UBUNTU 8.04LTS (Wed Oct 08 2008 - 20:57:54 CDT)
- Re: pbctools usage (Wed Oct 08 2008 - 10:23:44 CDT)
- Re: lipid tail selection (Mon Oct 06 2008 - 09:18:15 CDT)
- Re: atom type (Thu Oct 02 2008 - 13:16:47 CDT)
- Re: volumetric maps (Thu Oct 02 2008 - 10:57:45 CDT)
- Re: (Sun Sep 28 2008 - 13:15:18 CDT)
- Re: visualisation problem with bonds and PBC (Fri Sep 26 2008 - 11:46:39 CDT)
- Re: viewing an embryo (Tue Sep 23 2008 - 15:10:02 CDT)
- Re: trouble with running vmd after installation , machine gets hung (Sun Sep 21 2008 - 03:13:41 CDT)
- Re: trouble with running vmd after installation , machine gets hung (Fri Sep 19 2008 - 06:05:42 CDT)
- Re: Alias histidine residue (Sat Sep 13 2008 - 09:09:31 CDT)
- Re: Rendering problem (Fri Sep 12 2008 - 01:25:43 CDT)
- Re: long bonds (Wed Sep 10 2008 - 10:23:18 CDT)
- Re: saving charges (Mon Sep 08 2008 - 14:13:46 CDT)
- Re: Superimposition: atomselect for reverse topology (Sun Sep 07 2008 - 14:09:44 CDT)
- Re: generate psf structure (Sun Sep 07 2008 - 13:50:39 CDT)
- Re: how to draw the bonds in VMD? (Sun Sep 07 2008 - 13:41:30 CDT)
- Re: Running without interface (Thu Sep 04 2008 - 12:06:44 CDT)
- Re: newbie issues (Tue Sep 02 2008 - 14:10:19 CDT)
- Re: Merge psf and pdb (Tue Sep 02 2008 - 10:46:07 CDT)
- Re: Merge psf and pdb (Tue Sep 02 2008 - 08:15:39 CDT)
- Re: TXT program editor (Thu Aug 28 2008 - 17:51:39 CDT)
- Re: TXT program editor (Thu Aug 28 2008 - 15:50:21 CDT)
- Re: namd-l: diffusion coefficient from rmsd (Wed Aug 27 2008 - 22:39:52 CDT)
- Re: resid of water that is hydrogen bonded (Mon Aug 25 2008 - 14:56:41 CDT)
- Re: measure gofr - how is g(r) normalised? (Mon Aug 25 2008 - 15:14:35 CDT)
- Re: Failure to open PDB files (Mon Aug 25 2008 - 14:52:38 CDT)
- Re: Trouble updating frames in script (Tue Aug 19 2008 - 15:14:42 CDT)
- Re: Trouble updating frames in script (Tue Aug 19 2008 - 13:06:44 CDT)
- Re: how to call dssp in a script (Mon Aug 18 2008 - 10:42:14 CDT)
- Re: Question about trace vmd_frame(molid) (Fri Aug 15 2008 - 13:55:54 CDT)
- Re: Question about trace vmd_frame(molid) (Fri Aug 15 2008 - 12:12:03 CDT)
- Re: LAMMPS Trajectory Bond Specification (Thu Aug 14 2008 - 16:24:13 CDT)
- Re: protein-water hydrogen bonds (Tue Aug 12 2008 - 10:53:35 CDT)
- Re: protein-water hydrogen bonds (Tue Aug 12 2008 - 10:37:45 CDT)
- Re: rdf for big systems (Mon Aug 11 2008 - 13:35:11 CDT)
- Re: save selected residues (Mon Aug 11 2008 - 11:01:48 CDT)
- Re: problem controlling orientation of the simulation box drawn by pbctools (Sun Aug 10 2008 - 11:11:34 CDT)
- Re: save selected residues (Sun Aug 10 2008 - 09:48:15 CDT)
- Re: How to embed 3-D image into powerpoint (Mon Aug 04 2008 - 15:57:41 CDT)
- Re: problem using pbc wrap: broken molecule (Fri Aug 01 2008 - 16:29:59 CDT)
- Re: problem using pbc wrap: broken molecule (Fri Aug 01 2008 - 10:00:18 CDT)
- Re: vmd-rmsd-color-tool (Fri Aug 01 2008 - 09:27:35 CDT)
- Re: ionize with VMD a TOP file (Fri Aug 01 2008 - 09:28:58 CDT)
- Re: Gromacs reading: Why scaling?? (Thu Jul 31 2008 - 19:51:10 CDT)
- Re: Gromacs reading: Why scaling?? (Thu Jul 31 2008 - 19:11:11 CDT)
- Re: VMD with amber rst7 and parm7 files (Thu Jul 31 2008 - 09:02:29 CDT)
- Re: g(r) (Thu Jul 31 2008 - 08:57:34 CDT)
- Re: Vmd on Fedora 9 (Wed Jul 30 2008 - 15:24:29 CDT)
- Re: g(r) (Wed Jul 30 2008 - 14:31:55 CDT)
- Re: Vmd on Fedora 9 (Wed Jul 30 2008 - 12:18:11 CDT)
- Re: Selecting atoms that have real SASA greater than 0, Not using "Surface" (Tue Jul 29 2008 - 20:40:30 CDT)
- Re: Re: periodic boundary conditions (yes, i read the tutorials) (Mon Jul 28 2008 - 20:44:41 CDT)
- Re: solvating protein, fixed residue (Mon Jul 28 2008 - 13:52:42 CDT)
- Re: solvation and box size (Mon Jul 28 2008 - 06:30:07 CDT)
- Re: Python for OS X (Sat Jul 26 2008 - 12:56:18 CDT)
- Re: questions relating to VolMapTool (Wed Jul 23 2008 - 06:30:55 CDT)
- Re: Selecting the sides of a benzene ring (Wed Jul 23 2008 - 06:36:25 CDT)
- Re: rdf for big systems (Tue Jul 22 2008 - 19:09:09 CDT)
- Re: rdf for big systems (Tue Jul 22 2008 - 17:06:30 CDT)
- Re: Creating a VMD movie from a Tcl script (Tue Jul 22 2008 - 15:59:42 CDT)
- Re: vecsub command (Tue Jul 22 2008 - 11:48:31 CDT)
- Re: Selecting the sides of a benzene ring (Tue Jul 22 2008 - 11:45:54 CDT)
- Re: Periodic image and transformation matrix (Mon Jul 21 2008 - 19:50:24 CDT)
- Re: Missing angles and dihedrals (Mon Jul 21 2008 - 19:31:48 CDT)
- Re: Creating a VMD movie from a Tcl script (Mon Jul 21 2008 - 14:13:59 CDT)
- Re: Creating a VMD movie from a Tcl script (Mon Jul 21 2008 - 14:09:46 CDT)
- Re: Creating a VMD movie from a Tcl script (Mon Jul 21 2008 - 12:01:22 CDT)
- Re: real coordinates (Fri Jul 18 2008 - 12:08:25 CDT)
- Re: Tetrahedral representation (Wed Jul 16 2008 - 18:24:09 CDT)
- Re: Problem writing trajectory to "crd" (Amber) format? (Wed Jul 16 2008 - 09:31:59 CDT)
- Re: problem with correct visualization of residues (Tue Jul 15 2008 - 13:39:06 CDT)
- Re: problem with correct visualization of residues (Tue Jul 15 2008 - 13:21:57 CDT)
- Re: Fwd: PDB Bonds versus "distance" bonds (Tue Jul 15 2008 - 11:20:53 CDT)
- Re: speed of movie (Sun Jul 13 2008 - 15:49:02 CDT)
- Re: pick atom id script (Fri Jul 11 2008 - 09:37:49 CDT)
- Re: trajectory to xyz file. (Mon Jul 07 2008 - 15:11:30 CDT)
- Re: Dihedrale angles in VMD (Thu Jul 03 2008 - 12:24:16 CDT)
- Re: Loading Problem (Thu Jul 03 2008 - 12:28:18 CDT)
- Re: The maximal size which can be displayed by VMD? (Wed Jul 02 2008 - 16:36:57 CDT)
- Re: VMDMODULATERIBBON or sausage representation (Tue Jul 01 2008 - 14:07:42 CDT)
- Re: Mac OSX crash with bus error/segmentation fault upon loading pdb/dcd (Mon Jun 30 2008 - 13:17:20 CDT)
- Re: Error using namdstat.tcl script (Mon Jun 30 2008 - 11:42:26 CDT)
- Re: Problem of Movie Maker Plugin (Sat Jun 28 2008 - 11:19:02 CDT)
- Re: how to make a movie of 2 or more trajectories (Fri Jun 27 2008 - 20:57:18 CDT)
- Re: mutate by D-residues... (Fri Jun 27 2008 - 20:47:58 CDT)
- Re: select cylindrical slab (Fri Jun 27 2008 - 12:51:26 CDT)
- Re: Compiling from source on Mac OS X 10.5 (Fri Jun 27 2008 - 14:23:44 CDT)
- Re: Compiling from source on Mac OS X 10.5 (Fri Jun 27 2008 - 13:54:36 CDT)
- Re: vmd shuts itself down (Fri Jun 27 2008 - 09:23:12 CDT)
- Re: How to delete anwanted waters in a special area ? (Wed Jun 25 2008 - 11:51:29 CDT)
- Re: How to visualize iron and chlorine properly. (Mon Jun 23 2008 - 10:13:41 CDT)
- Re: Re: Re: PSF works in NAMD but not in VMD (Mon Jun 23 2008 - 10:18:33 CDT)
- Re: Inquiry concerning the plugin "Inorganic builder" (Mon Jun 23 2008 - 10:11:04 CDT)
- Re: how to export into postscript with MultiPlot in tcl mode? (Mon Jun 23 2008 - 10:03:21 CDT)
- Re: Re: PSF works in NAMD but not in VMD (Fri Jun 20 2008 - 09:57:37 CDT)
- Re: displaying hydrogen bonds when hydrogens are not available (Thu Jun 19 2008 - 09:31:53 CDT)
- Re: About occupancy volume maps (Thu Jun 19 2008 - 05:20:24 CDT)
- Re: Labelling Coordinates (not Atoms) (Wed Jun 18 2008 - 18:43:57 CDT)
- Re: render "color by volume" (Tue Jun 17 2008 - 18:34:28 CDT)
- Re: specify a rtf file when generating a psf file. (Tue Jun 17 2008 - 14:50:55 CDT)
- Re: render "color by volume" (Tue Jun 17 2008 - 14:51:28 CDT)
- Re: opening gromacs .gro file gives warning messsage and does not display the molecule (Tue Jun 17 2008 - 09:11:03 CDT)
- Re: Question: Too many arguments (Mon Jun 16 2008 - 09:45:36 CDT)
- Re: User defined charges with PMEpot (Fri Jun 13 2008 - 07:34:42 CDT)
- Re: User defined charges with PMEpot (Thu Jun 12 2008 - 22:24:15 CDT)
- Re: problem loading trajectory in VMD under windows XP (Tue Jun 10 2008 - 20:21:24 CDT)
- Re: IED on MacOSX 10.3.9 (Tue Jun 10 2008 - 07:03:30 CDT)
- Re: Image rendering using pov-ray (Mon Jun 09 2008 - 21:34:57 CDT)
- Re: Image rendering using pov-ray (Mon Jun 09 2008 - 21:30:35 CDT)
- Re: Dipole moment? (Sat Jun 07 2008 - 12:47:19 CDT)
- Re: Total list of Tcl features (Sat Jun 07 2008 - 09:41:05 CDT)
- Re: Total list of Tcl features (Sat Jun 07 2008 - 10:21:27 CDT)
- Re: Solvation (Fri Jun 06 2008 - 09:04:27 CDT)
- Re: Long file paths in Mac OS 10.5.3 (Wed Jun 04 2008 - 16:17:25 CDT)
- Re: Create atom selection from list of integers (Mon Jun 02 2008 - 11:08:16 CDT)
- Re: silly rmsd script doesn' t work ... (Fri May 30 2008 - 07:49:45 CDT)
- Re: Exceeded maximum number of bonds (Thu May 29 2008 - 13:54:24 CDT)
- Re: [lammps-users] MDAnalysis (slightly OT) (Tue May 27 2008 - 12:54:41 CDT)
- Re: IMD per TCL (Tue May 27 2008 - 04:39:51 CDT)
- Re: Label on Movie (Mon May 26 2008 - 14:06:52 CDT)
- Re: Label on Movie (Mon May 26 2008 - 12:02:08 CDT)
- Re: mass weighted rms fit (Sun May 25 2008 - 11:20:56 CDT)
- Re: How to discard certain atoms (Sun May 25 2008 - 07:59:23 CDT)
- Re: Measure gofr with large DCD files (Possibly use bigdcd ???) (Fri May 23 2008 - 18:59:33 CDT)
- Re: Movies using Cygwin's ImageMagick? (Thu May 22 2008 - 09:33:30 CDT)
- Re: Crystal water (Thu May 22 2008 - 05:23:24 CDT)
- Re: scale trajectory coords (Wed May 21 2008 - 22:58:01 CDT)
- Re: your mail (Wed May 21 2008 - 09:17:12 CDT)
- Re: Using NAMD Energy Plugin (Tue May 20 2008 - 07:42:39 CDT)
- Re: plot residues without hydrogen atoms (Tue May 20 2008 - 07:40:19 CDT)
- Re: Color of bond betwen atoms with different colors (Fri May 16 2008 - 16:35:50 CDT)
- Re: Slow tcl/tk script for trajectory analysis (Fri May 16 2008 - 14:46:11 CDT)
- Re: Draw in a new layer problems (Fri May 16 2008 - 10:48:12 CDT)
- Re: membrane builder (Tue May 13 2008 - 17:31:47 CDT)
- Re: Bond lengths from PDB and PSF (Mon May 12 2008 - 17:32:55 CDT)
- Re: 'within' command in VMD (Sun May 11 2008 - 13:22:18 CDT)
- Re: Recompile VMD with larger index types (Sun May 11 2008 - 11:18:17 CDT)
- Re: 'within' command in VMD (Sun May 11 2008 - 03:35:53 CDT)
- Re: Recompile VMD with larger index types (Sat May 10 2008 - 10:19:36 CDT)
- bigdcd v2.0 testers needed... (Wed May 07 2008 - 15:21:47 CDT)
- Re: Writepdb with Solvation Box (Tue May 06 2008 - 13:25:34 CDT)
- Re: memorry problem (Fri May 02 2008 - 15:04:02 CDT)
- Re: problem using pbc wrap (Tue Apr 29 2008 - 06:49:20 CDT)
- Re: Can not enter text in VMD plugin window (Fri Apr 25 2008 - 21:52:12 CDT)
- Re: Rendering Labels with Tachyon (Thu Apr 24 2008 - 17:29:10 CDT)
- Re: Rendering Labels with Tachyon (Thu Apr 24 2008 - 14:45:02 CDT)
- Re: problem with "within" command of VMD (Thu Apr 24 2008 - 08:43:19 CDT)
- Re: resolution screen in Linux (Thu Apr 24 2008 - 08:15:59 CDT)
- Re: measure distance (Wed Apr 23 2008 - 09:04:00 CDT)
- Re: memorry problem (Wed Apr 23 2008 - 06:58:42 CDT)
- Re: bug in the g(r) evaluation? (Tue Apr 22 2008 - 14:32:07 CDT)
- Re: bug in the g(r) evaluation? (Tue Apr 22 2008 - 10:10:35 CDT)
- Re: warnings during plugin build (Tue Apr 22 2008 - 05:39:59 CDT)
- RE: warnings during plugin build (Mon Apr 21 2008 - 18:45:50 CDT)
- RE: warnings during plugin build (Sun Apr 20 2008 - 13:33:29 CDT)
- RE: warnings during plugin build (Sat Apr 19 2008 - 18:40:41 CDT)
- Re: warnings during plugin build (Sat Apr 19 2008 - 09:21:04 CDT)
- Re: RMSD between two structures without the same number of atoms (Fri Apr 18 2008 - 09:20:29 CDT)
- Re: PPMTOMPEG Quality (Thu Apr 17 2008 - 16:23:34 CDT)
- Re: atomselect (Thu Apr 17 2008 - 11:07:27 CDT)
- Re: measure hbonds between protein and water - problem with periodic boundary conditions (Thu Apr 17 2008 - 04:52:29 CDT)
- Re: Trajectory title (Wed Apr 16 2008 - 11:06:05 CDT)
- Re: Timer in VMD (Tue Apr 15 2008 - 18:58:46 CDT)
- Re: catDCD (Mon Apr 14 2008 - 12:08:34 CDT)
- Re: compilation with python 2.5 and file permissions from the CVS repository (Mon Apr 14 2008 - 05:16:19 CDT)
- RE: compilation with python 2.5 and file permissions from the CVS repository (Sun Apr 13 2008 - 15:00:12 CDT)
- Re: compilation with python 2.5 and file permissions from the CVS repository (Sun Apr 13 2008 - 12:58:26 CDT)
- Re: change residue name and write a trajectory file (Thu Apr 10 2008 - 18:19:12 CDT)
- Re: some questions about the RDF plugin (Mon Apr 07 2008 - 16:01:54 CDT)
- Re: some questions about the RDF plugin (Mon Apr 07 2008 - 15:32:29 CDT)
- Re: Insall Problem VMD Linux 1.8.6 Part II! (Sun Apr 06 2008 - 23:50:58 CDT)
- Re: Install problem VMD Linux 1.8.6 (Sun Apr 06 2008 - 20:21:11 CDT)
- Re: About Tcl command (Sun Apr 06 2008 - 00:58:40 CDT)
- Re: How to read specific DCD frames directly in Fortran? (Sat Apr 05 2008 - 18:08:23 CDT)
- Re: Topology file (Fri Apr 04 2008 - 11:52:27 CDT)
- Re: Compiling VMD under Windows XP (Tue Apr 01 2008 - 06:06:22 CDT)
- Re: Compiling VMD under Windows XP (Mon Mar 31 2008 - 21:47:02 CDT)
- Re: using cvs under Windows XP (Mon Mar 31 2008 - 09:37:54 CDT)
- Re: porcupine plot (Mon Mar 31 2008 - 04:01:53 CDT)
- Re: Problems with PDB file format in VMD (Thu Mar 27 2008 - 20:42:45 CDT)
- Re: Tcl 8.5.x in upcoming versions of VMD... (Thu Mar 27 2008 - 18:14:23 CDT)
- Re: Tcl 8.5.x in upcoming versions of VMD... (Thu Mar 27 2008 - 17:32:20 CDT)
- Re: How to see the original Origin (0,0,0, coordinate) of a system (Thu Mar 27 2008 - 11:57:58 CDT)
- Re: problem with pbc (Thu Mar 27 2008 - 07:26:05 CDT)
- Re: Can VMD show the interactions between different structure part? (Thu Mar 27 2008 - 06:43:41 CDT)
- Re: problem with pbc (Thu Mar 27 2008 - 06:06:17 CDT)
- Re: Can VMD show the interactions between different structure part? (Wed Mar 26 2008 - 23:19:40 CDT)
- Re: problem with pbc (Wed Mar 26 2008 - 16:38:07 CDT)
- Re: Can we get secondary structure from PDB files? (Wed Mar 26 2008 - 06:15:42 CDT)
- Re: time correlation function (Tue Mar 25 2008 - 22:56:27 CDT)
- Re: VMD tutorial for working with solid crystals (Tue Mar 25 2008 - 13:38:06 CDT)
- RE: script to read dcd frame-at-a-time & write a selection (Mon Mar 24 2008 - 20:07:35 CDT)
- RE: script to read dcd frame-at-a-time & write a selection (Mon Mar 24 2008 - 19:53:36 CDT)
- RE: script to read dcd frame-at-a-time & write a selection (Mon Mar 24 2008 - 19:22:30 CDT)
- Re: script to read dcd frame-at-a-time & write a selection (Mon Mar 24 2008 - 17:43:28 CDT)
- Re: atoms with changing colors (Thu Mar 20 2008 - 17:05:53 CDT)
- Re: RMSD calc (Thu Mar 20 2008 - 05:37:31 CDT)
- Re: Calculating the Tilt Angle of a non-helical peptide (Wed Mar 19 2008 - 21:52:58 CDT)
- Re: Calculating the Tilt Angle of a non-helical peptide (Wed Mar 19 2008 - 21:07:06 CDT)
- Re: Build a VMD forum? (Wed Mar 19 2008 - 16:08:27 CDT)
- Re: Radial Density (Wed Mar 19 2008 - 11:48:49 CDT)
- Re: dipole (Wed Mar 19 2008 - 07:32:17 CDT)
- Re: Diffusion Constant (Wed Mar 19 2008 - 06:09:56 CDT)
- Re: Diffusion Constant (Tue Mar 18 2008 - 22:59:53 CDT)
- Re: Display bond breaking (Tue Mar 18 2008 - 22:25:27 CDT)
- Re: DLPOLY HISTORY FILE in VMD (Tue Mar 18 2008 - 11:23:31 CDT)
- RE: closewater.tcl (Mon Mar 17 2008 - 16:02:02 CDT)
- Re: GLSL lost (Mon Mar 17 2008 - 13:59:35 CDT)
- RE: different numbers of frames even though... (Fri Mar 14 2008 - 13:05:03 CDT)
- Re: different numbers of frames even though... (Fri Mar 14 2008 - 09:49:00 CDT)
- Re: ramaplot (Fri Mar 14 2008 - 09:37:41 CDT)
- Re: Does VMD support to draw a velocity field diagram? (Thu Mar 13 2008 - 18:03:54 CDT)
- Re: snapshot not compatible with -dispdev text? (Mon Mar 10 2008 - 17:35:52 CDT)
- Re: Automatically zoom so that the protein fill the display (Mon Mar 10 2008 - 13:50:50 CDT)
- Re: pbc join (Sun Mar 09 2008 - 23:57:35 CDT)
- Re: radial density over one frame (Sun Mar 09 2008 - 15:49:17 CDT)
- Re: compile problem for VMD1.8.6: OpenGLRenderer.C (Sat Mar 08 2008 - 20:51:50 CST)
- Re: calculate volume (Sat Mar 08 2008 - 12:29:19 CST)
- Re: how to make smooth movies ? (Fri Mar 07 2008 - 10:40:59 CST)
- Re: Using RMSDTT in a script and aligning volume data (Fri Mar 07 2008 - 10:23:46 CST)
- Re: H2 bond distances calculation n displaying image (Fri Mar 07 2008 - 10:16:05 CST)
- Re: RMSD trajectory Tool (Thu Mar 06 2008 - 07:48:05 CST)
- Re: radial distribution function and number integrals (Wed Mar 05 2008 - 21:54:46 CST)
- Re: radial distribution function and number integrals (Wed Mar 05 2008 - 16:34:14 CST)
- Re: running vmd in parallel (Wed Mar 05 2008 - 12:37:02 CST)
- Re: radial distribution function and number integrals (Wed Mar 05 2008 - 12:45:36 CST)
- Re: VMD languaje information (Tue Mar 04 2008 - 11:57:08 CST)
- Re: missing basic tutorials for VMD scripting? (Sat Mar 01 2008 - 06:49:32 CST)
- Re: unusual bond between the cysteine and arginine residue during the simulation (Fri Feb 29 2008 - 13:47:55 CST)
- Re: no convergence in align (Fri Feb 29 2008 - 09:25:23 CST)
- Re: periodic images for trajectory (Wed Feb 27 2008 - 05:07:04 CST)
- Re: Compute force between two atoms (Tue Feb 26 2008 - 21:42:48 CST)
- Re: more on lammps and VMD coordinates (Tue Feb 26 2008 - 12:08:13 CST)
- Re: control drawing method (Mon Feb 25 2008 - 14:51:57 CST)
- Re: How to get rubber-like surface with Tachyon renderer (Mon Feb 25 2008 - 11:21:09 CST)
- Re: classify and compute the forces between two atoms (Mon Feb 25 2008 - 10:08:44 CST)
- Re: How to get rubber-like surface with Tachyon renderer (Mon Feb 25 2008 - 10:13:33 CST)
- Re: Changing a structure of macromolecule with VMD (Sun Feb 24 2008 - 11:36:04 CST)
- Re: visualizing disulphide bonds (Sun Feb 24 2008 - 06:21:41 CST)
- Re: Ramachandran plot tcl script (Sat Feb 23 2008 - 17:17:38 CST)
- Re: Residue replacement question] (Sat Feb 23 2008 - 17:29:35 CST)
- Re: vmd snapshots without display (Fri Feb 22 2008 - 11:41:19 CST)
- Re: movie generation without runtime frame show (Fri Feb 22 2008 - 06:54:42 CST)
- Re: monitor helicity change (Thu Feb 21 2008 - 22:40:02 CST)
- Re: VASP CHGCAR (Thu Feb 21 2008 - 17:18:50 CST)
- Re: VASP CHGCAR (Thu Feb 21 2008 - 15:35:07 CST)
- Re: couldn't fork child process: not enough memory (Thu Feb 21 2008 - 15:28:16 CST)
- Re: defining bonds (Thu Feb 21 2008 - 15:17:50 CST)
- Re: gromacs trajectory files (Thu Feb 21 2008 - 06:58:52 CST)
- Re: Selection in VMD Graphical representation (Wed Feb 20 2008 - 12:05:29 CST)
- Re: how to set molinfo from python (Tue Feb 19 2008 - 10:49:17 CST)
- Re: tcl script memory problem - NOT in atomselect (Tue Feb 19 2008 - 07:35:20 CST)
- Re: VMD limitation for loading large trajectory file (Fri Feb 15 2008 - 17:00:40 CST)
- Re: Unable to see VDW , CPK representations (Fri Feb 15 2008 - 16:51:34 CST)
- Re: display of periodic DCD information/PBCTOOL (Fri Feb 15 2008 - 12:22:40 CST)
- Re: Volume data formats (Thu Feb 14 2008 - 12:23:56 CST)
- Re: FieldLines (Tue Feb 12 2008 - 09:53:36 CST)
- Re: installation problem vmd 1.8.6 on fedora 3 (Sat Feb 09 2008 - 07:57:27 CST)
- Re: heuristic bond computation (Fri Feb 08 2008 - 08:03:31 CST)
- Re: heuristic bond computation (Thu Feb 07 2008 - 22:16:18 CST)
- Re: vmd maxAtom (Thu Feb 07 2008 - 05:58:14 CST)
- Re: vmd maxAtom (Wed Feb 06 2008 - 10:47:56 CST)
- Re: merge pdb (Wed Feb 06 2008 - 10:41:43 CST)
- Re: namd help? (Tue Feb 05 2008 - 12:54:36 CST)
- Re: Displaying Counter Alongside Animation (Tue Feb 05 2008 - 03:23:44 CST)
- Re: Question about geometrical figures (Fri Feb 01 2008 - 11:28:35 CST)
- Re: Rdf from a specific point (Fri Feb 01 2008 - 11:48:12 CST)
- Re: question about 'measure bond' (Fri Feb 01 2008 - 09:46:30 CST)
- Re: Rdf from a specific point (Fri Feb 01 2008 - 08:55:39 CST)
- Re: animation of an atom diffusion inside a bulk crystal (Fri Feb 01 2008 - 05:01:33 CST)
- Re: Percentage Helicity calculation in VMD (Thu Jan 31 2008 - 23:37:28 CST)
- Re: Sasa script in python returns "Runtime error" (Wed Jan 30 2008 - 10:24:55 CST)
- Re: Sasa script in python returns "Runtime error" (Wed Jan 30 2008 - 10:28:57 CST)
- Re: Sasa script in python returns "Runtime error" (Wed Jan 30 2008 - 09:01:21 CST)
- Re: Sasa script in python returns "Runtime error" (Tue Jan 29 2008 - 11:19:17 CST)
- Re: your mail (Mon Jan 28 2008 - 19:36:38 CST)
- Re: where is the "move" procedure in the toturial (Mon Jan 28 2008 - 09:08:25 CST)
- Re: VMD 1.8.6, XTC format on Mac OS X 10.5.1 (Sat Jan 26 2008 - 13:29:35 CST)
- Re: MSVC Projects Corrupt and Missing (Thu Jan 24 2008 - 22:42:47 CST)
- Re: proximity of residues (Wed Jan 23 2008 - 04:56:19 CST)
- Re: proximity of residues (Wed Jan 23 2008 - 03:49:49 CST)
- Re: delatom "no segment..." (Tue Jan 22 2008 - 05:49:32 CST)
- Re: SSE from the protein sequence (Mon Jan 21 2008 - 09:53:10 CST)
- Re: visualizing a simple polymer chain via VMD (Wed Jan 16 2008 - 12:58:17 CST)
- Re: visualizing a simple polymer chain via VMD (Wed Jan 16 2008 - 12:26:08 CST)
- Re: replace molecule? (Wed Jan 16 2008 - 11:02:32 CST)
- Re: how to load a molecule in pdb format and save in mol2 format in batch mode (Mon Jan 14 2008 - 03:39:58 CST)
- Re: Export VMD graphics to POV-Ray (Fri Jan 11 2008 - 11:59:04 CST)
- Re: Is there any way to diagonalize a 3x3 matrix in VMD,.......... (Wed Jan 09 2008 - 14:54:33 CST)
- Re: connectivity problem (Wed Jan 09 2008 - 10:09:35 CST)
- Re: How to choose part of the volume data for isosurface visualization? (Tue Jan 08 2008 - 11:37:29 CST)
- Re: Question about Gromacs box size in VMD..... (Thu Jan 03 2008 - 08:24:07 CST)
- Re: select atoms between molecules (Wed Jan 02 2008 - 11:46:13 CST)
- Re: Selecting water molecules within 5 ang in a trajectory( generated by amber). (Wed Dec 26 2007 - 14:12:05 CST)
- Re: VMD movie from XYZ coordinate if file has two type of atoms] (Tue Dec 11 2007 - 21:50:14 CST)
- Re: helical construction (Mon Dec 10 2007 - 15:26:30 CST)
- Re: Finding the length of multiple small molecules (Sat Dec 08 2007 - 16:03:07 CST)
- Re: Re: problem with the new cartoon representation mode (Sat Dec 08 2007 - 16:08:22 CST)
- Re: problem with the new cartoon representation mode (Sat Dec 08 2007 - 14:37:00 CST)
- Re: Finding the length of multiple small molecules (Fri Dec 07 2007 - 14:19:47 CST)
- Re: drawing trajectory of a molecule (Fri Dec 07 2007 - 09:20:28 CST)
- Re: Making movies in VMD (Wed Dec 05 2007 - 19:45:54 CST)
- Re: Making movies in VMD (Wed Dec 05 2007 - 19:16:40 CST)
- Re: Render Snapshot from the Tcl console (jpg gif format) (Sun Dec 02 2007 - 20:34:21 CST)
- Re: Timeline viewer (Sat Dec 01 2007 - 18:33:58 CST)
- Re: Timeline viewer (Fri Nov 30 2007 - 15:31:56 CST)
- Re: Command to change background to gradient (Fri Nov 30 2007 - 06:15:44 CST)
- Re: Intersurf and interface residues (Thu Nov 29 2007 - 04:08:08 CST)
- Re: Suspected SpamFR:RE: cave (Mon Nov 26 2007 - 04:28:18 CST)
- RE: cave (Sun Nov 25 2007 - 12:58:47 CST)
- Re: Hydrophobicity plots in VMD (Sun Nov 25 2007 - 12:49:29 CST)
- Re: Delete overlapping residues (Sat Nov 24 2007 - 17:30:22 CST)
- Re: Trying to get VMD to run locally while logged into a remote machine (Wed Nov 21 2007 - 16:35:50 CST)
- Re: Calculate density (Wed Nov 21 2007 - 14:20:15 CST)
- Re: gui RMSD vs text RMSD calcs differ b/c ddiff backbone atom definitions (Sat Nov 17 2007 - 00:11:54 CST)
- Re: vmd 1.8.6 doesn't run on Fedora Core 7 EMT64 (Fri Nov 16 2007 - 23:56:37 CST)
- Re: combine.tcl membrane plugin (Thu Nov 15 2007 - 22:47:21 CST)
- Re: combine.tcl membrane plugin (Thu Nov 15 2007 - 03:33:31 CST)
- RE: OpenGL Display (Wed Nov 14 2007 - 23:53:07 CST)
- Re: combine.tcl membrane plugin (Wed Nov 14 2007 - 20:40:06 CST)
- Re: installed vmd_LINUXIA64 but recieve error : /usr/local/vmd/vmd_LINUX: command not found (Wed Nov 14 2007 - 20:34:06 CST)
- Re: OpenGL Display (Wed Nov 14 2007 - 04:09:40 CST)
- Re: Dynamic bonds and H2 molecules. (Wed Nov 14 2007 - 04:07:00 CST)
- Re: installed vmd_LINUXIA64 but recieve error : /usr/local/vmd/vmd_LINUX: command not found (Tue Nov 13 2007 - 23:50:04 CST)
- Re: problem with colouring the surface with electroststic potential (Tue Nov 13 2007 - 02:15:54 CST)
- Re: stride binaries for windows XP OS (Tue Nov 13 2007 - 02:27:33 CST)
- Re: problems with atomselect: missing selection (Mon Nov 12 2007 - 06:38:01 CST)
- Re: Generatin PSF for alkanes (Sun Nov 11 2007 - 00:54:50 CST)
- Re: merging two pdb files (Thu Nov 08 2007 - 21:55:17 CST)
- Re: merging two pdb files (Thu Nov 08 2007 - 21:50:10 CST)
- Re: molfile reader plugin woes (Thu Nov 08 2007 - 06:44:28 CST)
- Re: merging two pdb files (Thu Nov 08 2007 - 06:39:05 CST)
- Re: cloning a molecule (Mon Nov 05 2007 - 00:35:27 CST)
- Re: NAMD trajectories in VMD (Fri Oct 26 2007 - 12:22:32 CDT)
- Re: Color by Volume on an Intel 945GM (Sat Oct 20 2007 - 15:44:39 CDT)
- Re: how to remove chain id ? (Sat Oct 20 2007 - 14:00:02 CDT)
- Re: how to remove chain id ? (Sat Oct 20 2007 - 08:33:05 CDT)
- Re: Extracting IR spectra from trajectories (Fri Oct 19 2007 - 15:30:50 CDT)
- Re: Is catdcd running on Windows? (Wed Oct 17 2007 - 06:34:45 CDT)
- Re: Problems Opening Large .dx File (Mon Oct 15 2007 - 15:56:28 CDT)
- Re: setting unit cell dimensions (Mon Oct 15 2007 - 03:54:49 CDT)
- Re: VMD access using XWIN32 or X-Deep (Fri Oct 12 2007 - 14:08:30 CDT)
- Re: Cube Files - proportion of the electron density (Tue Oct 09 2007 - 16:40:25 CDT)
- Re: You are right. That's the problem. (Mon Oct 08 2007 - 12:10:07 CDT)
- Re: Normal VMD crashed when pdb load but Debug mode works (Mon Oct 08 2007 - 11:41:09 CDT)
- Re: the representation of within 10 angstrom of a specific point (Sun Oct 07 2007 - 23:48:36 CDT)
- Re: Cube Files - proportion of the electron density (Sun Oct 07 2007 - 18:14:00 CDT)
- Re: NAMDENERGY analysis (Thu Oct 04 2007 - 15:34:32 CDT)
- Re: Installation and running on VMD on Debian Testing System (Wed Oct 03 2007 - 12:42:25 CDT)
- Re: hbonds (how to count) (Wed Oct 03 2007 - 06:29:53 CDT)
- Re: Storing multiple values in the user field (Fri Sep 28 2007 - 16:17:09 CDT)
- behavior of "mol addfile first/last" with non-integer frame numbers (Thu Sep 27 2007 - 19:35:40 CDT)
- Re: atom index number (Thu Sep 27 2007 - 02:42:42 CDT)
- Re: Time series for SASA calculation: (Wed Sep 26 2007 - 20:01:35 CDT)
- Re: residue selection: conflict between resid and residue (Fri Sep 21 2007 - 17:08:32 CDT)
- Re: residue selection: conflict between resid and residue (Fri Sep 21 2007 - 13:15:29 CDT)
- Re: output of distances between atoms or coordinates (Thu Sep 20 2007 - 10:20:08 CDT)
- Re: sidechain correlated motions (Thu Sep 20 2007 - 09:42:59 CDT)
- Re: change the representation of certain atoms which pass a geometric criterion during a movie (Tue Sep 18 2007 - 08:34:29 CDT)
- Re: VMD text mode version (Fri Sep 14 2007 - 10:09:50 CDT)
- Re: Questions abt VMD plugins (Fri Sep 14 2007 - 10:06:06 CDT)
- Re: secondary structure colors in timeline plugin (Fri Sep 14 2007 - 07:46:50 CDT)
- Re: VMD on Playstation 3 (Fri Sep 14 2007 - 07:39:16 CDT)
- Re: Problems with a multiple orbital cube file (Fri Sep 14 2007 - 07:32:14 CDT)
- Re: VMD Images and Movies Tutorial: Working With Trajectories (Thu Sep 13 2007 - 09:04:08 CDT)
- Re: GLSL rendering mode is NOT available (Mon Sep 10 2007 - 09:28:37 CDT)
- Re: Further angle question (Sat Sep 08 2007 - 20:37:28 CDT)
- Re: vmdbasename: Undefined variable (Sat Sep 08 2007 - 20:39:56 CDT)
- Re: Computing angles (Fri Sep 07 2007 - 17:27:26 CDT)
- Re: is it possible to skip frame when using bigdcd (Fri Sep 07 2007 - 07:56:23 CDT)
- Re: the console window is automatically closed without any error messages (Thu Sep 06 2007 - 12:50:08 CDT)
- Re: Solvate package (Wed Sep 05 2007 - 14:05:45 CDT)
- Re: regular expression in Tcl (Tue Sep 04 2007 - 09:12:58 CDT)
- Re: advanced python console (Tue Sep 04 2007 - 09:18:34 CDT)
- Re: Problem with saving coordinate (Fri Aug 31 2007 - 00:17:25 CDT)
- Re: numbonds (Tue Aug 28 2007 - 12:05:46 CDT)
- Re: automating graphic representations (Fri Aug 24 2007 - 13:08:44 CDT)
- Re: Selection within VMD (Wed Aug 22 2007 - 14:12:59 CDT)
- Re: automating graphic representations (Wed Aug 22 2007 - 13:33:03 CDT)
- Re: Selecting the N-closest Waters (Tue Aug 21 2007 - 20:35:16 CDT)
- Re: Selecting the N-closest Waters (Tue Aug 21 2007 - 18:23:55 CDT)
- Re: Selecting the N-closest Waters (Tue Aug 21 2007 - 19:26:57 CDT)
- Re: How to load packages from tcllib into VMD (Tue Aug 21 2007 - 08:13:00 CDT)
- Re: How to load packages from tcllib into VMD (Mon Aug 20 2007 - 18:43:53 CDT)
- Re: Changing the Index values of a molecule (the differenece between gro and pdb files) (Wed Aug 15 2007 - 12:51:30 CDT)
- Re: Very peculiar problem with bigdcd if not running interactively (post moved over from namd forum) (Wed Aug 15 2007 - 10:47:46 CDT)
- Re: Installing VMD to work with MSMS (Tue Aug 14 2007 - 11:31:49 CDT)
- Re: Re: help with badwater script (Mon Aug 13 2007 - 19:08:30 CDT)
- Re: Running a vmd tcl script in the background (Mon Aug 13 2007 - 19:11:53 CDT)
- Re: problem regarding stride (Mon Aug 13 2007 - 11:06:48 CDT)
- Re: VMD plugin error src/webpdbplugin.c (Sun Aug 12 2007 - 18:06:37 CDT)
- Re: gmake invalid option --c install (Sat Aug 11 2007 - 13:46:01 CDT)
- Re: problem regarding stride (Sat Aug 11 2007 - 12:51:55 CDT)
- Re: gmake invalid option --c install (Sat Aug 11 2007 - 11:38:48 CDT)
- RE: bilayer thickness in simulation of POPC membranes (Sat Aug 11 2007 - 11:33:51 CDT)
- Re: how to make user input during runtime of a tcl program using TkConsole? (Fri Aug 10 2007 - 10:20:47 CDT)
- Re: Corrupt cpmd-vmd.pdf File? (Thu Aug 09 2007 - 16:39:02 CDT)
- Re: radial density (Thu Aug 09 2007 - 09:23:39 CDT)
- Re: Writing MolFile plugin for CIF (Wed Aug 08 2007 - 09:40:14 CDT)
- Re: within and exwithin macro (Tue Aug 07 2007 - 15:18:02 CDT)
- Re: CNT Analysis (Tue Aug 07 2007 - 08:54:06 CDT)
- Re: within and exwithin macro (Tue Aug 07 2007 - 08:46:49 CDT)
- Re: within and exwithin macro (Tue Aug 07 2007 - 08:26:18 CDT)
- Re: a problem with installation (to generate the Makefile ) (Tue Aug 07 2007 - 08:15:36 CDT)
- Re: Automatic PSF Builder Help (Mon Aug 06 2007 - 11:29:16 CDT)
- Re: chloroform box (Sun Aug 05 2007 - 12:35:15 CDT)
- Re: Loading files into already-running version of VMD from command prompt (Sat Aug 04 2007 - 16:04:31 CDT)
- Re: chloroform box (Sat Aug 04 2007 - 11:38:10 CDT)
- Re: save state fails (Thu Aug 02 2007 - 10:40:25 CDT)
- Re: eigen values (Thu Aug 02 2007 - 11:51:00 CDT)
- Re: coloring selected chains and residues (Mon Jul 30 2007 - 19:00:55 CDT)
- Re: Tachyon doesn't take into account ColorID (Mon Jul 30 2007 - 14:17:13 CDT)
- Re: PBC problem in gofr (Mon Jul 30 2007 - 08:57:10 CDT)
- Re: can't add packages (Sat Jul 28 2007 - 17:32:46 CDT)
- Re: orientation of hexahedrons parallelepipeds unit cells relative to x,y axes (Sat Jul 28 2007 - 17:24:08 CDT)
- Re: frame number input in tcl and direct mol graph display update (II) (Fri Jul 27 2007 - 13:56:05 CDT)
- Re: Wrap only whole molecules (Fri Jul 27 2007 - 13:26:06 CDT)
- Re: nonstandard solvate + cyclic peptides in explicit DMSO box + gofr (Thu Jul 26 2007 - 11:48:08 CDT)
- Re: deposition simulation from lammps (Thu Jul 26 2007 - 12:53:39 CDT)
- Re: Boundry Dimensions for Solvation (Thu Jul 26 2007 - 11:41:04 CDT)
- Re: how to wrap trajectory into truncated octahedral box (Thu Jul 26 2007 - 11:50:43 CDT)
- Re: ntermolecular atomselection (Thu Jul 26 2007 - 11:35:46 CDT)
- Re: how to run VMD on IBM machines (Wed Jul 25 2007 - 11:04:02 CDT)
- Re: Reading a pdbqt file (generated from AutoDock) (Fri Jul 20 2007 - 00:02:24 CDT)
- Re: Writing out .dcd for discontinous frames (Thu Jul 19 2007 - 06:14:19 CDT)
- Re: Setting modstyle volumeslice options via tk console (Wed Jul 18 2007 - 16:27:47 CDT)
- Re: Language definitions - \usepackage{listings} (Tue Jul 17 2007 - 07:11:54 CDT)
- Re: Regarding APBS calculation in VMD (Tue Jul 17 2007 - 07:43:04 CDT)
- Re: Re: missing cell length on DCD (Sat Jul 14 2007 - 11:42:08 CDT)
- Re: RDF calculations (Fri Jul 13 2007 - 17:38:35 CDT)
- Re: how to save a list in a file (Fri Jul 13 2007 - 13:04:16 CDT)
- Re: exporting xyz file (Thu Jul 12 2007 - 10:37:40 CDT)
- Re: frame number input in tcl and direct mol graph display update (Thu Jul 12 2007 - 10:03:43 CDT)
- Re: exporting xyz file (Thu Jul 12 2007 - 09:58:32 CDT)
- Re: shifting of the origin (Wed Jul 11 2007 - 10:49:47 CDT)
- Re: shifting of the origin (Wed Jul 11 2007 - 09:22:41 CDT)
- Re: displaying velocity from dlpoly history (Tue Jul 10 2007 - 15:07:16 CDT)
- Re: atomselect (Tue Jul 10 2007 - 08:49:38 CDT)
- Re: Using multiple CPUS (Mon Jul 09 2007 - 14:12:00 CDT)
- Re: need help (Mon Jul 09 2007 - 09:25:03 CDT)
- Re: vmd crashes on startup (Fri Jul 06 2007 - 12:51:55 CDT)
- Re: command line dcd to trr? (Fri Jul 06 2007 - 08:26:37 CDT)
- Re: Divide by Zero Error , but can't find the zero! (Thu Jul 05 2007 - 14:53:16 CDT)
- Re: calculation limit of gofr? (Thu Jul 05 2007 - 09:47:43 CDT)
- Re: Video card query (Thu Jul 05 2007 - 09:42:37 CDT)
- Re: Broken tube drawing method? (Thu Jul 05 2007 - 09:24:39 CDT)
- Re: vmd crashes on startup (Wed Jul 04 2007 - 15:55:33 CDT)
- Re: How to display boundary crossing bonds? (Wed Jul 04 2007 - 11:51:57 CDT)
- Re: developing plugins to vmd in python (Tue Jul 03 2007 - 09:25:33 CDT)
- Re: how to calculate hydrogen bond? (Sun Jul 01 2007 - 21:34:56 CDT)
- Re: vmd and amber (Thu Jun 28 2007 - 16:14:49 CDT)
- Re: get charge (Thu Jun 28 2007 - 12:27:43 CDT)
- Re: generate surface figure (Thu Jun 28 2007 - 12:25:30 CDT)
- Re: parallel capabilities (Tue Jun 26 2007 - 16:24:22 CDT)
- Re: parallel capabilities (Tue Jun 26 2007 - 14:14:27 CDT)
- redefining macros vs. update of selections (Mon Jun 25 2007 - 19:28:53 CDT)
- Re: Using VMD just to plot some coordinates from a mathematical/geometrical model (Sat Jun 23 2007 - 09:23:20 CDT)
- Re: Text/Labels on ray tracing external renderer (Fri Jun 22 2007 - 14:26:00 CDT)
- Re: VMD 1.8.6 Not Responding! (Thu Jun 21 2007 - 10:37:44 CDT)
- Re: Script to rendering ANISOU records in VMD (Tue Jun 19 2007 - 22:08:55 CDT)
- Re: VMD 1.8.6 Not Responding! (Mon Jun 18 2007 - 09:49:47 CDT)
- Re: use animatepdbs.tcl to include APBS potential maps (Mon Jun 11 2007 - 11:22:01 CDT)
- Re: use animatepdbs.tcl to include APBS potential maps (Sun Jun 10 2007 - 15:00:58 CDT)
- Re: Python Module (Fri Jun 08 2007 - 08:35:04 CDT)
- Re: release memory in TCL (Thu Jun 07 2007 - 18:59:10 CDT)
- Re: Python Module (Thu Jun 07 2007 - 17:50:14 CDT)
- Re: release memory in TCL (Thu Jun 07 2007 - 17:46:50 CDT)
- Re: traj not visualized but pdb is visualized (Thu Jun 07 2007 - 08:29:33 CDT)
- Re: .xyz file, namelist index too large error (Wed Jun 06 2007 - 19:00:56 CDT)
- Re: release memory in TCL (Wed Jun 06 2007 - 16:35:17 CDT)
- Re: Measuring hbonds between selections from different molecules (Tue Jun 05 2007 - 20:09:49 CDT)
- Re: Measuring hbonds between selections from different molecules (Tue Jun 05 2007 - 19:41:24 CDT)
- Re: Fwd: vmd installation Linux Debian i386 (Tue Jun 05 2007 - 17:43:49 CDT)
- Re: Fwd: Linux installation issue (Tue Jun 05 2007 - 10:00:17 CDT)
- Re: VMD-Main window doesn't load after change in .vmdrc (Mon Jun 04 2007 - 20:12:25 CDT)
- Re: Distance measurement via measure bond (Mon Jun 04 2007 - 10:26:18 CDT)
- Re: parameters file of POPC (Mon Jun 04 2007 - 09:17:02 CDT)
- Re: Installing VMD 1.8.6 (Mon Jun 04 2007 - 08:03:30 CDT)
- Re: Using regular expressions on tcl atomselection (Thu May 31 2007 - 17:17:25 CDT)
- Re: lipid Scd order parameter for a large bilayer (1440 lipids) with a changing bilayer normal (ie. bilayer undulations) (Wed May 30 2007 - 14:14:08 CDT)
- Re: pqr files---- (Tue May 29 2007 - 18:49:38 CDT)
- Re: Installation Error Involving TLC (Mon May 28 2007 - 15:36:40 CDT)
- Re: Problem with bondsrecalc (Mon May 28 2007 - 13:17:22 CDT)
- Re: How to use remote GLSL rendering capabilities? (Mon May 28 2007 - 10:51:07 CDT)
- Re: help on trajectory density map (Mon May 28 2007 - 10:40:12 CDT)
- Re: Fwd: Linux installation issue (Sat May 26 2007 - 15:41:24 CDT)
- Re: Fwd: Linux installation issue (Sat May 26 2007 - 15:36:40 CDT)
- Re: Linux installation issue (Sat May 26 2007 - 15:32:59 CDT)
- Re: problem with installing VMD on a LINUX cluster (Fri May 25 2007 - 17:00:20 CDT)
- Re: Installation Error Involving TLC (Fri May 25 2007 - 13:23:11 CDT)
- Re: (Fri May 25 2007 - 11:00:48 CDT)
- Re: fortran/tcl (Fri May 25 2007 - 10:55:50 CDT)
- Re: How to use remote GLSL rendering capabilities? (Thu May 24 2007 - 17:38:36 CDT)
- Re: VMD installation (Thu May 24 2007 - 16:13:53 CDT)
- Re: Displaying the periodic box ... (Thu May 24 2007 - 09:19:44 CDT)
- Re: questions about developing a plugin (Thu May 24 2007 - 08:19:04 CDT)
- Re: questions about developing a plugin (Thu May 24 2007 - 08:02:33 CDT)
- Re: questions about developing a plugin (Wed May 23 2007 - 16:19:17 CDT)
- Re: Customized radii (Tue May 22 2007 - 12:56:58 CDT)
- Re: show atom number in xyz file (Tue May 22 2007 - 07:33:34 CDT)
- Re: vmd movies in powerpoint (Sun May 20 2007 - 12:23:32 CDT)
- Re: help on writing a tcl script (Sat May 19 2007 - 12:28:29 CDT)
- Re: help on writing a tcl script (Fri May 18 2007 - 11:22:27 CDT)
- Re: Questions on VMD (Thu May 17 2007 - 16:32:05 CDT)
- Re: how to make a movie using Principal Component Analysis (Wed May 16 2007 - 20:16:00 CDT)
- Re: question about making movies (Wed May 16 2007 - 13:39:13 CDT)
- Re: a gas box (Tue May 15 2007 - 08:22:16 CDT)
- Re: GLSL rendering problems (??) (Mon May 14 2007 - 13:03:49 CDT)
- Re: GLSL rendering problems (??) (Mon May 14 2007 - 11:04:34 CDT)
- Re: how to caculate the hydrogen bonds occupancy? (Sun May 13 2007 - 14:46:04 CDT)
- Re: files for air (Fri May 11 2007 - 07:46:23 CDT)
- Re: Fwd: vmd first installation (Fri May 11 2007 - 07:21:43 CDT)
- Re: Consider fluctuating volume for density (Thu May 10 2007 - 09:45:04 CDT)
- Re: a air box (Thu May 10 2007 - 09:22:45 CDT)
- Re: Problem loading pdb file on VMD (Wed May 09 2007 - 19:21:40 CDT)
- Re: Problem loading pdb file on VMD (Wed May 09 2007 - 17:43:45 CDT)
- Re: Fwd: vmd first installation (Wed May 09 2007 - 16:41:10 CDT)
- Re: pbcunwrap, DL_POLY v 3 (Wed May 09 2007 - 07:42:23 CDT)
- Re: Problem loading pdb file on VMD (Wed May 09 2007 - 07:38:54 CDT)
- Re: Problem loading pdb file on VMD (Wed May 09 2007 - 07:37:56 CDT)
- Re: color by frame? (Mon May 07 2007 - 08:47:16 CDT)
- Re: problem using bigdcd.tcl script does not run beyond the first frame no error reported (Mon May 07 2007 - 08:36:50 CDT)
- Re: How to align a protein normal to lipid bilayer (Fri May 04 2007 - 08:53:30 CDT)
- Re: (Thu May 03 2007 - 17:00:48 CDT)
- Re: vmd-1:how to merge two proteins (receptor & ligand) (Thu May 03 2007 - 16:01:46 CDT)
- Re: dumb movie maker question (Thu May 03 2007 - 10:16:10 CDT)
- Re: a water box containing only the absorbent heads of (Thu May 03 2007 - 07:44:05 CDT)
- Re: Problem with periodic condition (Mon Apr 30 2007 - 15:47:12 CDT)
- Re: Visualization and reading problems (Sun Apr 29 2007 - 13:41:54 CDT)
- Re: increase light under depth cueing (Sun Apr 29 2007 - 12:43:19 CDT)
- Re: increase light under depth cueing (Sat Apr 28 2007 - 17:45:36 CDT)
- Re: Problem with periodic condition (Sat Apr 28 2007 - 16:15:06 CDT)
- Re: Problem with periodic condition (Fri Apr 27 2007 - 14:42:33 CDT)
- Re: Dynamic 'Determine file type' list in main menu !?! (Fri Apr 27 2007 - 09:02:09 CDT)
- Re: H-bonds (Tue Apr 24 2007 - 11:28:31 CDT)
- Re: Variable number of atoms in xyz file (Tue Apr 24 2007 - 09:21:45 CDT)
- Re: About openning a file to write in callback function (Mon Apr 23 2007 - 14:00:35 CDT)
- Re: Misunderstanding about SASA (Sat Apr 21 2007 - 17:31:53 CDT)
- Announcement: QM/MM Workshop (Thu Apr 19 2007 - 09:14:50 CDT)
- Re: tcl variable withing variable name (Thu Apr 19 2007 - 08:30:34 CDT)
- Re: vmd can't start up after being installed in linux (Tue Apr 17 2007 - 22:01:27 CDT)
- Re: RE: "which files to make a spatial grid?" => Bug for list command? (Tue Apr 17 2007 - 07:25:11 CDT)
- Re: .xyz to .dcd using catdcd (Mon Apr 16 2007 - 19:51:35 CDT)
- Re: which files to make a spatial grid? (Mon Apr 16 2007 - 19:46:08 CDT)
- Re: writing coordinates of a selection only (Mon Apr 16 2007 - 18:42:26 CDT)
- Re: winvmd error during calculation (Sat Apr 14 2007 - 09:10:39 CDT)
- Re: VMD installation (Fri Apr 13 2007 - 09:40:07 CDT)
- Re: problem using NAMD trajectory in charmm 32-bit, 64-bit etc. (yes, I posted this on charmm lists too) (Tue Apr 03 2007 - 09:20:25 CDT)
- Re: doubts in movie making using vmd. (Wed Mar 28 2007 - 21:47:12 CDT)
- Re: rdf using gui (Tue Mar 27 2007 - 16:44:09 CDT)
- Re: dynamic bonding (Tue Mar 27 2007 - 15:48:22 CDT)
- Re: mol load and mol addfile (Mon Mar 26 2007 - 16:33:51 CDT)
- Re: Re: windows version of VMD (Sun Mar 25 2007 - 16:46:41 CDT)
- Re: Re: Scripting problem with h-bond listing (Sun Mar 18 2007 - 15:03:09 CDT)
- Re: question about gofr (Sat Mar 17 2007 - 15:48:44 CDT)
- Re: read the pdb file using VMD (Tue Mar 06 2007 - 01:30:16 CST)
- Re: reading charmm files (Mon Mar 05 2007 - 11:56:34 CST)
- Re: reading charmm files (Mon Mar 05 2007 - 08:27:12 CST)
- Re: New Molecule (or Load Data) resets viewpoint of Display. Why? (Mon Mar 05 2007 - 05:24:25 CST)
- Re: vmd/gaussian cubes (Fri Mar 02 2007 - 11:48:20 CST)
- Re: Atomselection in NAMDENERGY (Fri Mar 02 2007 - 08:31:54 CST)
- Re: Updating atomselection from frame to frame (Fri Mar 02 2007 - 08:27:07 CST)
- Re: Calculating dipole moment of protein (Fri Mar 02 2007 - 07:41:25 CST)
- Re: Updating atomselection from frame to frame (Fri Mar 02 2007 - 07:32:00 CST)
- Re: Colouring Atoms according to the centro-symmetric parameter (Thu Mar 01 2007 - 13:45:36 CST)
- Re: calculation of free energy between lipid membrane and protein (Thu Mar 01 2007 - 11:40:00 CST)
- Re: multiple dx frames (Wed Feb 28 2007 - 14:42:34 CST)
- Re: Calculate VolMap for every frame by a script (Tue Feb 27 2007 - 17:25:16 CST)
- Re: VMD open GL Display problem (Tue Feb 27 2007 - 11:43:12 CST)
- Re: Re: bug report in VMD 1.8.5 (Mon Feb 26 2007 - 17:26:38 CST)
- Re: Question about RDF of VMD (Sat Feb 24 2007 - 21:25:14 CST)
- Re: "get {x y z}" returns single value (Fri Feb 23 2007 - 11:10:04 CST)
- Re: transparent background in vmd (Fri Feb 23 2007 - 10:49:56 CST)
- Re: Number of Frames in VMD (Fri Feb 23 2007 - 09:05:15 CST)
- Re: cube file: coordinates rotated (Thu Feb 22 2007 - 09:07:28 CST)
- Re: Re: namd-l: Nanopore simulation (Wed Feb 21 2007 - 12:06:08 CST)
- Re: Isosurface rendering (Wed Feb 21 2007 - 11:54:12 CST)
- Re: Isosurface rendering (Wed Feb 21 2007 - 09:44:21 CST)
- Re: generating (Tue Feb 20 2007 - 14:45:27 CST)
- Re: generating (Tue Feb 20 2007 - 09:05:44 CST)
- Re: TCl question: preventing STDOUT (Thu Feb 15 2007 - 06:37:36 CST)
- Re: atomselection: number of residues (Sun Feb 11 2007 - 13:41:08 CST)
- Re: hot keys & save state (Sun Feb 11 2007 - 13:06:08 CST)
- Re: VMD-1.8.5: GLSL & NVidia troubles + fixed previous Spaceball problem (Sun Feb 11 2007 - 12:51:06 CST)
- Re: load in multiple files once (Fri Feb 09 2007 - 16:30:00 CST)
- Re: Saving work in VMD--this seems ridiculously difficult! (Fri Feb 09 2007 - 10:52:01 CST)
- Re: file "top_all22_prot.inp" (Wed Feb 07 2007 - 09:49:39 CST)
- Re: Regarding com file error (Mon Feb 05 2007 - 12:20:12 CST)
- Re: Saving mutli-molecule structures in VMD (e.g., for building membranes) (Mon Feb 05 2007 - 12:09:15 CST)
- Re: Units for Measure Dipole (Mon Feb 05 2007 - 12:04:12 CST)
- Re: Error while running scripts: terminate called after throwing an instance of 'std::bad_alloc' (Sat Feb 03 2007 - 06:31:49 CST)
- Re: Units for Measure Dipole (Fri Feb 02 2007 - 18:28:15 CST)
- Re: Atomselect on several molecules (Fri Feb 02 2007 - 13:36:13 CST)
- Re: Atomselect on several molecules (Fri Feb 02 2007 - 11:19:06 CST)
- Re: sending arguments to tcl (Thu Feb 01 2007 - 15:55:30 CST)
- Re: Compute the angle between a vector and the largest inertia axis (Tue Jan 30 2007 - 11:16:32 CST)
- RE: Delete frames in a script (Tue Jan 30 2007 - 11:13:14 CST)
- Re: Re: Add transparent plane to molecular structure (Tue Jan 30 2007 - 11:04:27 CST)
- Re: Add transparent plane to molecular structure (Mon Jan 29 2007 - 21:31:50 CST)
- Re: an old...old..old..question (Mon Jan 29 2007 - 18:33:14 CST)
- Re: history in tcl/tk script (Mon Jan 29 2007 - 09:12:13 CST)
- Re: history in tcl/tk script (Fri Jan 26 2007 - 10:39:02 CST)
- Re: wildcards in atomselect command (Fri Jan 26 2007 - 10:03:14 CST)
- Re: Installing VMD on a PC (Wed Jan 24 2007 - 19:49:17 CST)
- Re: question on spin density (Wed Jan 24 2007 - 17:14:53 CST)
- RE: measure XYZ dimensions of a system (Wed Jan 24 2007 - 13:52:43 CST)
- Re: measure XYZ dimensions of a system (Wed Jan 24 2007 - 12:13:42 CST)
- Re: vector (Wed Jan 24 2007 - 10:26:55 CST)
- Re: hingefind (Tue Jan 23 2007 - 11:23:17 CST)
- Re: hingefind (Mon Jan 22 2007 - 19:27:05 CST)
- Re: renumbering residues after deletion of atoms (Thu Jan 18 2007 - 11:51:48 CST)
- Re: scripts in windows version (Wed Jan 17 2007 - 14:47:48 CST)
- Re: [Fwd: Re: create new topology file for new molecule] (Wed Jan 10 2007 - 08:39:17 CST)
- Re: Why does lipid move out of water box (Tue Jan 09 2007 - 14:13:08 CST)
- Re: Unaligned access to ... (Mon Jan 08 2007 - 19:10:39 CST)
- Re: Anyone have catdcd-4.0 for BlueGene? (Mon Jan 08 2007 - 16:36:38 CST)
- Re: error message using gofr (Fri Jan 05 2007 - 18:09:22 CST)
- Re: Save coordinates from MD simulation (Thu Jan 04 2007 - 11:46:39 CST)
- Re: Install and Configure Problems (Wed Jan 03 2007 - 09:43:38 CST)
- Re: VMD 1.8.5 installed. The graphics flashed and disappeared after installation. (Tue Dec 19 2006 - 14:15:00 CST)
- Re: electrostatic potential (Wed Dec 13 2006 - 15:11:27 CST)
- Re: Getting coordinates (Tue Dec 05 2006 - 16:37:00 CST)
- Re: duration of video mpeg (Sun Dec 03 2006 - 16:31:58 CST)
- Re: duration of video mpeg (Sun Dec 03 2006 - 09:39:28 CST)
- RE: radius of the curvature (Wed Nov 29 2006 - 12:31:59 CST)
- Re: radius of the curvature (Tue Nov 28 2006 - 16:08:29 CST)
- Re: CAve Question (Mon Nov 27 2006 - 18:47:22 CST)
- Re: movie making (Thu Nov 23 2006 - 15:36:32 CST)
- Re: Installing VMD Windows version on 64-bit Windows Environment (Wed Nov 22 2006 - 09:19:03 CST)
- Re: vector summation (Wed Nov 22 2006 - 09:13:45 CST)
- Re: Running a script using text mode (Tue Nov 21 2006 - 12:18:02 CST)
- Re: changing the representation of a vector (Fri Nov 17 2006 - 11:02:42 CST)
- Re: Change properties of representations - batch mode (Fri Nov 17 2006 - 10:47:02 CST)
- Re: how to extract atom information? (Thu Nov 16 2006 - 21:32:41 CST)
- Re: how to extract atom information? (Thu Nov 16 2006 - 20:08:01 CST)
- Re: Plotting Number of Hbonds and % Helicity with Time (Sat Nov 11 2006 - 18:57:25 CST)
- Re: Command line troubles (Sat Nov 11 2006 - 17:48:00 CST)
- Re: VMD installation problem (Fri Nov 10 2006 - 11:19:24 CST)
- Re: VMD - unable to create OpenGL (Tue Nov 07 2006 - 08:37:37 CST)
- Re: How to delete selected atoms from a molecule (Mon Nov 06 2006 - 09:30:58 CST)
- Re: installation problem (Tue Oct 31 2006 - 18:32:13 CST)
- Re: VMD - ATI video card (Tue Oct 31 2006 - 13:47:10 CST)
- Re: Reading box info. from PQR file (Mon Oct 30 2006 - 10:54:13 CST)
- Re: problem about "mol load psf md.pdf pdb md.pdb" (Wed Oct 25 2006 - 06:19:41 CDT)
- Re: adding selections (Fri Oct 20 2006 - 14:03:56 CDT)
- Re: CPK Graphical Representation (Fri Oct 20 2006 - 11:48:23 CDT)
- Re: How to use vector calculation ??? (Fri Oct 20 2006 - 10:45:11 CDT)
- Re: CPK Graphical Representation (Fri Oct 20 2006 - 10:40:46 CDT)
- Re: Using VMDPLUGIN_register_tcl (Wed Oct 18 2006 - 11:49:55 CDT)
- Re: update of atom selection at each step for trajectories (Wed Oct 18 2006 - 12:09:04 CDT)
- Re: electrostatic map render problem (Wed Oct 18 2006 - 11:56:21 CDT)
- Re: Using VMDPLUGIN_register_tcl (Wed Oct 18 2006 - 11:52:36 CDT)
- Re: Re: Volumetric data: Periodic expansion does not work; why? (Tue Oct 17 2006 - 11:08:49 CDT)
- Re: RPM spec file (Tue Oct 17 2006 - 11:04:37 CDT)
- Re: Volumetric data: Periodic expansion does not work; why? (Fri Oct 13 2006 - 11:15:36 CDT)
- Re: gofr (Wed Oct 11 2006 - 14:46:15 CDT)
- Re: Missing main menu (Mon Oct 09 2006 - 13:56:52 CDT)
- Re: Access to bond information inside a VMD plugin... (Mon Oct 09 2006 - 12:14:55 CDT)
- Re: Question about measure gofr (Fri Oct 06 2006 - 12:54:58 CDT)
- Re: problem viewing cube files (Thu Oct 05 2006 - 10:51:17 CDT)
- Re: problem viewing cube files (Wed Oct 04 2006 - 08:26:45 CDT)
- Re: problem running pgn script file (Tue Oct 03 2006 - 11:11:45 CDT)
- Re: Connectivity lost when loading second pdb (Tue Oct 03 2006 - 08:07:39 CDT)
- Re: sequential multiple structures (Fri Sep 29 2006 - 07:25:23 CDT)
- Re: problem using saltbr plugin in text mode (Wed Sep 27 2006 - 14:00:28 CDT)
- Re: VMD Prompt (Wed Sep 27 2006 - 13:20:46 CDT)
- Re: 1.8.5: VASP plugin not correct (Tue Sep 26 2006 - 09:33:45 CDT)
- Re: What unit system does VMD use? (Mon Sep 25 2006 - 12:00:07 CDT)
- Re: 1.8.5: VASP plugin not correct (Mon Sep 25 2006 - 11:44:23 CDT)
- Re: visualizing charges (Mon Sep 25 2006 - 10:01:46 CDT)
- Re: 1.8.5: VASP plugin not correct (Mon Sep 25 2006 - 08:45:26 CDT)
- Re: measure angle between three points in space (Sun Sep 24 2006 - 10:40:06 CDT)
- Re: What unit system does VMD use? (Sat Sep 23 2006 - 21:03:01 CDT)
- Re: What unit system does VMD use? (Fri Sep 22 2006 - 18:29:23 CDT)
- Re: visualizing charges (Fri Sep 22 2006 - 14:18:16 CDT)
- Re: What unit system does VMD use? (Thu Sep 21 2006 - 19:41:58 CDT)
- Re: Paratool Problem (Thu Sep 21 2006 - 14:42:15 CDT)
- Re: VMD won't make mpg out of my trajectory (Wed Sep 20 2006 - 15:12:13 CDT)
- Re: VMD won't make mpg out of my trajectory (Wed Sep 20 2006 - 14:00:56 CDT)
- Re: measure bond length? (Tue Sep 19 2006 - 12:03:23 CDT)
- Re: rmsf (Tue Sep 19 2006 - 11:07:26 CDT)
- Re: problem with -args in text mode (Mon Sep 18 2006 - 14:19:28 CDT)
- Re: problem with -args in text mode (Fri Sep 15 2006 - 23:34:41 CDT)
- Re: DPPC Bilayer Size (Thu Sep 14 2006 - 18:26:45 CDT)
- Re: manually defining bonds, setting atom colors (Thu Sep 14 2006 - 16:39:36 CDT)
- Re: Finding residues involved in Hbonds. (Thu Sep 14 2006 - 13:12:56 CDT)
- Re: drawing of direction vectors for conformational transition (Thu Sep 14 2006 - 11:25:47 CDT)
- Re: puts format (Wed Sep 13 2006 - 16:43:31 CDT)
- Re: rdf plugin in vmd 1.85 (Wed Sep 13 2006 - 14:24:10 CDT)
- Re: drawing of direction vectors for conformational transition (Wed Sep 13 2006 - 14:18:03 CDT)
- Re: antialiasing (Wed Sep 13 2006 - 14:10:30 CDT)
- Re: antialiasing (Wed Sep 13 2006 - 13:56:38 CDT)
- Re: saving charges in the B column (Fri Sep 08 2006 - 19:27:52 CDT)
- Re: protein in membrane (Fri Sep 08 2006 - 18:12:02 CDT)
- Re: Min. Image Convention after Translation & Rotation (Fri Sep 08 2006 - 14:00:58 CDT)
- Re: dipole moment (Fri Sep 08 2006 - 12:13:29 CDT)
- Re: dipole moment (Fri Sep 08 2006 - 12:10:54 CDT)
- Re: How to use bigdcd in vmd batch mode? (Fri Sep 08 2006 - 12:04:35 CDT)
- Re: Min. Image Convention after Translation & Rotation (Thu Sep 07 2006 - 20:08:45 CDT)
- Re: pass variables from the shell to VMD (Thu Sep 07 2006 - 11:51:01 CDT)
- Re: slicing (Wed Sep 06 2006 - 11:46:23 CDT)
- Re: dynamical list of atoms (Wed Sep 06 2006 - 10:54:30 CDT)
- Re: imposing period boundary conditions in a simulation with a crystal (Wed Sep 06 2006 - 09:23:39 CDT)
- Re: Matrix inverse (Tue Sep 05 2006 - 18:39:22 CDT)
- Re: Matrix inverse (Tue Sep 05 2006 - 18:18:10 CDT)
- Re: imposing period boundary conditions in a simulation with a crystal (Tue Sep 05 2006 - 12:00:19 CDT)
- Re: Warning: poorly guessed coordinates using PsfGen (Tue Sep 05 2006 - 10:53:35 CDT)
- Re: qsub (torque/maui) and vmd (Mon Sep 04 2006 - 14:00:38 CDT)
- Re: radial pair distribution function: molecule/water? (Mon Sep 04 2006 - 12:14:28 CDT)
- Re: qsub (torque/maui) and vmd (Mon Sep 04 2006 - 11:18:05 CDT)
- Re: looking for VMD draw scripts. (Fri Sep 01 2006 - 16:52:51 CDT)
- looking for VMD draw scripts. (Fri Sep 01 2006 - 15:34:59 CDT)
- Re: output file format (Fri Sep 01 2006 - 15:01:50 CDT)
- Re: Where did I put those angles? (Thu Aug 31 2006 - 17:51:43 CDT)
- Re: problem with vecsub, help with Tcl Script (Thu Aug 31 2006 - 12:59:32 CDT)
- Re: output file format (Thu Aug 31 2006 - 10:52:13 CDT)
- Re: Counting H-bonds from a dcd file (Tue Aug 29 2006 - 19:16:19 CDT)
- Re: Counting H-bonds from a dcd file (Tue Aug 29 2006 - 17:42:56 CDT)
- Re: A error of " transforming dcd into pdb " (Tue Aug 29 2006 - 11:55:49 CDT)
- Re: loading gzipped trajectories into vmd (Tue Aug 29 2006 - 11:09:10 CDT)
- Re: Problem with vmdsphere.frag shader (Mon Aug 28 2006 - 12:32:16 CDT)
- Re: water numbering (Mon Aug 28 2006 - 11:41:53 CDT)
- Re: gyration radius for a trajectory (Fri Aug 25 2006 - 09:40:54 CDT)
- Re: animated gif option in VMD for Windows. (Thu Aug 24 2006 - 14:45:53 CDT)
- Re: Unexpected End-of-file? (Wed Aug 23 2006 - 23:59:52 CDT)
- Re: PRODRG generated .gro file (Tue Aug 22 2006 - 21:51:42 CDT)
- Re: problems with autoionize (Tue Aug 22 2006 - 18:10:54 CDT)
- Re: (Tue Aug 22 2006 - 07:46:27 CDT)
- Re: Load (Thu Aug 17 2006 - 14:12:56 CDT)
- Re: Question About Tcl variables (Wed Aug 16 2006 - 19:36:28 CDT)
- Re: visualization code (Thu Aug 10 2006 - 00:00:11 CDT)
- Re: Which VMD executible to use? (Tue Aug 08 2006 - 10:54:22 CDT)
- Re: water model used for the waterbox in VMD (Tue Aug 08 2006 - 09:22:13 CDT)
- Re: To display only certain regions of the .dx map in VMD (Mon Aug 07 2006 - 13:35:43 CDT)
- Re: Atom selection based on arbitrary columns in the pdb file (Sat Aug 05 2006 - 12:05:51 CDT)
- Re: select only border of the water box (Fri Aug 04 2006 - 07:01:53 CDT)
- Re: Cannot run IED! :( (Thu Aug 03 2006 - 10:37:14 CDT)
- Re: VASP plugins (Thu Aug 03 2006 - 09:42:01 CDT)
- Re: Altering Definition of Molecular Coloring Method (Tue Aug 01 2006 - 07:29:44 CDT)
- Re: rendering..... (Mon Jul 31 2006 - 17:58:57 CDT)
- Re: Re: RDF.tcl (Fri Jul 28 2006 - 17:28:49 CDT)
- Re: where is option "Image Smoothing"? (Wed Jul 26 2006 - 06:31:32 CDT)
- Re: Rendering surfaces from PLT files (Mon Jul 24 2006 - 11:43:42 CDT)
- Re: Rendering surfaces from PLT files (Sun Jul 23 2006 - 00:30:08 CDT)
- Re: some parameters for TIP3P (Fri Jul 21 2006 - 18:25:19 CDT)
- Re: some parameters for TIP3P (Fri Jul 21 2006 - 16:38:07 CDT)
- Re: Mesa rendering (Thu Jul 20 2006 - 08:27:31 CDT)
- Re: "Unable to create OpenGL window" (Tue Jul 18 2006 - 15:41:35 CDT)
- Re: residue no. greater than 9999 in pdb files created with VMD (Wed Jul 12 2006 - 11:42:42 CDT)
- Re: please, give me a tip (Tue Jul 11 2006 - 11:24:20 CDT)
- Re: lammps and vmd (Tue Jul 11 2006 - 11:21:19 CDT)
- Re: movies on a mac (Mon Jul 03 2006 - 11:30:24 CDT)
- Re: Volume slices of Gaussian Cube Files: Color scale (Thu Jun 29 2006 - 17:50:24 CDT)
- Re: Correlated motion (Wed Jun 28 2006 - 14:51:52 CDT)
- Re: How to color the atoms based on the stress (Wed Jun 28 2006 - 05:46:21 CDT)
- Re: VMD crashed due to: vmd_LINUXAMD64: indirect_vertex_array.c:659: emit_DrawArrays_old: Assertion `elements_per_request >= count' failed (Tue Jun 27 2006 - 22:17:01 CDT)
- Re: VMD crashed due to: vmd_LINUXAMD64: indirect_vertex_array.c:659: emit_DrawArrays_old: Assertion `elements_per_request >= count' failed (Tue Jun 27 2006 - 19:53:00 CDT)
- Re: Tcl commands on Mac (Mon Jun 26 2006 - 18:32:57 CDT)
- Re: GLSL Compile Error (VMD 1.8.4, Nvidia Driver 8762) (Mon Jun 26 2006 - 06:28:22 CDT)
- Re: bond information in psf file (Sat Jun 24 2006 - 22:51:13 CDT)
- Re: animate with varying atom numbers (Sat Jun 10 2006 - 04:55:47 CDT)
- Re: color protein based on an event during a trajectory (Wed Jun 07 2006 - 23:24:40 CDT)
- Re: how to make movies from HISTORY file (Wed Jun 07 2006 - 07:01:03 CDT)
- Re: Compilation (Thu May 25 2006 - 05:20:42 CDT)
- RE: change default drawing and coloring method (Thu May 25 2006 - 05:06:12 CDT)
- Re: color by charge (can colors be changed?) (Thu May 25 2006 - 05:02:29 CDT)
- RE: Gaussian Cube file with VMD (Tue May 23 2006 - 15:34:04 CDT)
- Re: change default drawing and coloring method (Mon May 22 2006 - 23:29:51 CDT)
- Re: Gaussian Cube file with VMD (Mon May 22 2006 - 23:25:18 CDT)
- Re: bug in membrane plugin (Mon May 15 2006 - 13:44:00 CDT)
- Re: Plugin compilation (Mon May 15 2006 - 13:07:50 CDT)
- Re: secondary structure assignment (Mon May 15 2006 - 04:52:05 CDT)
- Re: How to select water near a certain residue if it is outside of the water box? (Sat May 13 2006 - 18:11:27 CDT)
- Re: high resolution images (Thu May 11 2006 - 18:18:10 CDT)
- Re: renderman output? (Wed May 10 2006 - 19:37:19 CDT)
- Re: Fwd: How to pick up the lost periodic information? (Mon May 08 2006 - 11:46:49 CDT)
- Re: plotting x y z data (Thu May 04 2006 - 07:01:39 CDT)
- Re: search path and naming conventions for custom TCL scripts (Wed May 03 2006 - 10:29:29 CDT)
- Re: coordinates of an atom (Tue May 02 2006 - 11:22:22 CDT)
- Re: hiding and renaming of graphical objects (Fri Apr 28 2006 - 12:32:59 CDT)
- Re: VMD-L: how to select water molecules between two residues in a trajectory. (Mon Apr 17 2006 - 11:33:38 CDT)
- Re: VMD-L: how to select water molecules between two residues in a trajectory. (Mon Apr 17 2006 - 10:50:38 CDT)
- Re: VMD-L: how to select water molecules between two residues in a trajectory. (Sat Apr 15 2006 - 20:31:11 CDT)
- Re: distances (Tue Apr 11 2006 - 14:11:13 CDT)
- Re: WARNING: Coordinates will be rotated to comply ... (Tue Apr 04 2006 - 14:26:01 CDT)
- Re: extracting values from a dx file (Thu Mar 23 2006 - 20:22:21 CST)
- Re: Strange GLSL rendering (Tue Mar 14 2006 - 09:12:33 CST)
- Re: VMD script (Tue Mar 14 2006 - 08:20:53 CST)
- Re: VMD script (Mon Mar 13 2006 - 18:40:14 CST)
- Re: Convert an ascii matrix to an image (Sat Mar 11 2006 - 16:25:18 CST)
- Re: pbc and vmd (Tue Mar 07 2006 - 09:55:27 CST)
- Re: pbc and vmd (Mon Mar 06 2006 - 01:01:20 CST)
- Re: color scale data range (Mon Feb 27 2006 - 08:20:34 CST)
- Re: Mapping electronic potential to surface (Thu Feb 23 2006 - 22:47:20 CST)
- Re: Mapping electronic potential to surface (Thu Feb 23 2006 - 00:55:53 CST)
- Re: Problem installation on RedHat (Tue Feb 21 2006 - 01:10:52 CST)
- Re: Problem with Hg, H (Mon Feb 20 2006 - 19:13:49 CST)
- Re: vmd 1.8.b does not start up (Thu Feb 16 2006 - 22:11:29 CST)
- fortran bindings for molfile library (Wed Feb 15 2006 - 09:31:54 CST)
- Re: Problem with VMD 'animate' command (Sun Feb 12 2006 - 20:00:46 CST)
- Re: uncompress files in tcl script (Thu Feb 09 2006 - 12:20:44 CST)
- Re: vmd-1.8.4b10/Linux amd64 only libstdc++.so.6 dependancy (Thu Feb 09 2006 - 06:16:54 CST)
- Re: analysis script causes vmd to crash (Thu Feb 02 2006 - 22:03:15 CST)
- Re: Can't load a large dcd? (Thu Jan 26 2006 - 07:09:22 CST)
- Re: Can't load a large dcd? (Wed Jan 25 2006 - 10:52:41 CST)
- Re: Changing Graphical Representations (Wed Jan 25 2006 - 06:53:15 CST)
- Re: Changing Default Settings for VMD Main Window (Thu Jan 19 2006 - 08:02:47 CST)
- Re: [vmd] max number of molecules on mac (Tue Jan 17 2006 - 06:32:23 CST)
- Re: Trouble installing VMD (Tue Jan 10 2006 - 23:37:14 CST)
- Re: loading a new molecule without changing the view (Fri Jan 06 2006 - 14:05:40 CST)
- Re: animate transparency (Fri Jan 06 2006 - 07:07:43 CST)
- Re: Building a sphere of atoms around a chosen atom (Tue Jan 03 2006 - 05:03:53 CST)
- Re: changing default sec struct colors (Mon Jan 02 2006 - 16:12:46 CST)
- Re: installation problem on solaris 9 (Sat Dec 31 2005 - 09:42:53 CST)
- Re: breaking a big dcd file (Tue Dec 20 2005 - 18:58:28 CST)
- Re: message in the console (Mon Dec 19 2005 - 14:59:27 CST)
- Re: hbonds count (Wed Nov 30 2005 - 09:22:16 CST)
- Re: How to efficiently update a surface (Tue Nov 29 2005 - 13:11:17 CST)
- Re: Changing colors (Mon Nov 28 2005 - 14:56:54 CST)
- Re: s-s bond in vmd not visualized (Wed Nov 23 2005 - 11:31:57 CST)
- Re: calculate rmsd in a loop:feedback [sorry if you get it twice] (Fri Nov 18 2005 - 08:54:02 CST)
- Re: calculate rmsd in a loop:feedback [sorry if you get it twice] (Thu Nov 17 2005 - 06:20:35 CST)
- Re: load two or more molecuoles at one time (Wed Nov 16 2005 - 16:21:35 CST)
- illegal mouse mode (Fri Nov 11 2005 - 13:33:13 CST)
- Re: psfgen vs. x-plor (Wed Nov 09 2005 - 02:12:36 CST)
- Re: IRIX6 build from CVS (Tue Nov 08 2005 - 07:01:51 CST)
- Re: saving macros (Wed Nov 02 2005 - 08:43:58 CST)
- Re: Cannot load Gromos96 trajectory file (attached) (Mon Oct 17 2005 - 19:37:14 CDT)
- Re: making a movie (Thu Oct 13 2005 - 10:49:25 CDT)
- Re: binning data for each frame and coordinate (Wed Oct 12 2005 - 13:34:37 CDT)
- Re: Import gromos output file into VMD without format conversion? (Thu Sep 22 2005 - 07:32:55 CDT)
- Re: problem with coloring surface by electrostatic potential (Tue Sep 20 2005 - 14:17:54 CDT)
- Re: counting selected atoms---selection time series (Thu Sep 01 2005 - 01:16:43 CDT)
- Re: Problems with AMBER trajectories (MOVIE!) and crd-files (Tue Aug 30 2005 - 13:43:29 CDT)
- Re: VMD fails to run (Sun Aug 21 2005 - 06:05:53 CDT)
- Re: residue numbering TCL versus PDB (Fri Jul 29 2005 - 02:13:59 CDT)
- Re: tcl syntax problem (Wed Jul 27 2005 - 15:09:23 CDT)
- Re: residue numbering TCL versus PDB (Wed Jul 27 2005 - 07:36:48 CDT)
- Re: VMD running slow (Mon Jul 25 2005 - 15:18:27 CDT)
- Re: Coloring by BETA not updating per frame (Sun Jul 24 2005 - 02:29:44 CDT)
- Re: exclude residues (Thu Jun 30 2005 - 15:54:32 CDT)
- Re: do not compute/draw bonds? (Thu Jun 23 2005 - 12:26:44 CDT)
- Re: phi and psi information (Thu Jun 23 2005 - 04:09:59 CDT)
- Re: VMD 1.8.4 test builds, 32-bit and 64-bit AIX5... (Thu Jun 23 2005 - 02:34:26 CDT)
- Re: Script for automated selection (Mon Jun 20 2005 - 12:58:41 CDT)
- Re: namd-l: Re: multiple automated calls to NAMD (Fri Jun 10 2005 - 02:17:32 CDT)
- Re: multiple automated calls to NAMD (Thu Jun 09 2005 - 02:38:35 CDT)
- Re: Change representation default from lines to points (Thu Jun 02 2005 - 10:08:24 CDT)
- Re: loading amber file (Wed Jun 01 2005 - 01:32:33 CDT)
- Re: Open diff pdbs with diff # of atoms? (Sat May 14 2005 - 02:04:23 CDT)
- RE: Rama plot (Tue May 10 2005 - 01:53:57 CDT)
- Re: writing DCD files (Fri May 06 2005 - 07:00:05 CDT)
- RE: color the surface with electrostatic potential value (Thu Apr 28 2005 - 01:12:24 CDT)
- Re: Re:Re:missing bond problem (Wed Apr 27 2005 - 10:01:50 CDT)
- Re: bond missimg (Mon Apr 25 2005 - 08:47:20 CDT)
- Re: Sphere size (Sat Apr 23 2005 - 06:22:25 CDT)
- Re: dcd large files, charmm-VMD (Fri Apr 22 2005 - 11:53:25 CDT)
- Re: compressed trajectory support (Mon Apr 18 2005 - 12:47:01 CDT)
- Re: compressed trajectory support (Mon Apr 18 2005 - 10:38:14 CDT)
- Re: "Draw" different things in different frames (Sun Apr 17 2005 - 03:07:11 CDT)
- Re: a question about get the coordinates in vector form (Fri Apr 15 2005 - 16:19:25 CDT)
- Re: CA-CA distances in a trayectory (Thu Apr 14 2005 - 09:07:57 CDT)
- Re: Customizing VMD Sessions (Thu Apr 14 2005 - 08:45:00 CDT)
- Re: Customizing VMD Sessions (Thu Apr 14 2005 - 05:39:38 CDT)
- Re: only vmd console (Wed Apr 13 2005 - 04:43:07 CDT)
- Re: mpg image speed (Mon Apr 11 2005 - 17:08:05 CDT)
- Re: vmd movie maker (Sun Apr 03 2005 - 03:11:22 CDT)
- Re: about adding ions to an ion channel pore (Fri Apr 01 2005 - 01:46:50 CST)
- Re: Maximum numbers of atoms (Wed Mar 30 2005 - 05:06:49 CST)
- Re: GRD file format (Wed Mar 23 2005 - 01:33:31 CST)
- Re: GRD file format (Tue Mar 22 2005 - 13:15:35 CST)
- Re: vmd installation in rehdat7.3 (Tue Mar 22 2005 - 02:01:52 CST)
- Re: VMD, NAMD and Interactive Essential Dynamics (IED) (Mon Mar 21 2005 - 12:22:52 CST)
- Re: install 1.8.3 on RHEL4 (Fri Mar 18 2005 - 15:45:06 CST)
- Re: VMD, NAMD and Interactive Essential Dynamics (IED) (Wed Feb 23 2005 - 14:29:22 CST)
- Re: Catching error info before it shuts down ... (Fri Feb 18 2005 - 03:39:48 CST)
- Re: determining vdw, elec, and others (Thu Feb 17 2005 - 03:43:21 CST)
- Re: Defining Bonds in .xyz file format (Wed Feb 16 2005 - 06:09:46 CST)
- Re: How to image molecules back into a PBC box? (Wed Feb 16 2005 - 06:02:17 CST)
- Re: slowing the movie animation (Mon Feb 14 2005 - 03:45:59 CST)
- Re: Distance calculation in TkConsole (Thu Feb 10 2005 - 07:44:33 CST)
- Re: volume shading in 1.8.3b1 ? (Mon Feb 07 2005 - 14:27:53 CST)
- Re: using gimp for converting jpg, tga ... images to high quality eps files (Mon Feb 07 2005 - 06:31:44 CST)
- Re: using gimp for converting jpg, tga ... images to high quality eps files (Sat Feb 05 2005 - 04:58:35 CST)
- Re: variable atom count in XYZ multiframe trajectory (Tue Feb 01 2005 - 13:59:08 CST)
- Re: Re: vmd not starting up on Fedora core 3 linux , nVidia quadro 980 XGL, nVidia 6629 driver (Tue Jan 11 2005 - 10:50:57 CST)
- Re: Periodic box display feature suggestion (Mon Jan 10 2005 - 15:00:47 CST)
- Re: Cluster Analysis given a dcd trajectory (Sat Jan 08 2005 - 13:28:55 CST)
- Re: vmd not starting up on Fedora core 3 linux , nVidia quadro 980 XGL, nVidia 6629 driver (Fri Jan 07 2005 - 07:20:17 CST)
- Re: vmd not starting up on Fedora core 3 linux , nVidia quadro 980 XGL, nVidia 6629 driver (Fri Jan 07 2005 - 06:37:21 CST)
- Re: vmd not starting up on Fedora core 3 linux , nVidia quadro 980 XGL, nVidia 6629 driver (Fri Jan 07 2005 - 05:40:13 CST)
- Re: vmd not starting up on Fedora core 3 linux , nVidia quadro 980 XGL, nVidia 6629 driver (Thu Jan 06 2005 - 09:42:26 CST)
- Re: pdb files (Wed Jan 05 2005 - 02:39:13 CST)
- Re: how to represent H-bonds between chain A and chain B using VMD (Wed Jan 05 2005 - 02:29:52 CST)
- Re: pdb files (Tue Jan 04 2005 - 14:02:50 CST)
- Re: pdb files (Tue Jan 04 2005 - 01:33:53 CST)
- Re: Re: your mail (Tue Jan 04 2005 - 01:25:10 CST)
- Re: ERROR) Failed to create Surf atom radii input file (Tue Dec 28 2004 - 10:14:27 CST)
- Re: ERROR) Failed to create Surf atom radii input file (Tue Dec 28 2004 - 08:37:37 CST)
- Re: DynamicBonds representation (Thu Dec 16 2004 - 13:04:27 CST)
- Re: getbonds for H-bonds request (Mon Nov 08 2004 - 13:31:35 CST)
- Re: Selection of atoms and bond specific to MD snapshot (Sat Nov 06 2004 - 15:12:35 CST)
- Re: VMD scripting questions (Fri Oct 29 2004 - 08:26:48 CDT)
- Re: vmd customization (Thu Oct 28 2004 - 07:30:57 CDT)
- Re: save states with relative directory structure (Wed Oct 20 2004 - 11:15:27 CDT)
- Re: Changing color of a given atom (Wed Oct 13 2004 - 00:52:36 CDT)
- Re: Specifying distances for bond cutoffs? (Wed Oct 13 2004 - 00:46:39 CDT)
- Re: Basic VMD questions... (Sun Oct 10 2004 - 03:20:16 CDT)
- Re: Basic VMD questions... (Fri Oct 08 2004 - 02:17:34 CDT)
- Re: measuring h-bonds (Fri Sep 17 2004 - 01:16:45 CDT)
- Re: measuring h-bond distances (Sun Sep 12 2004 - 06:18:27 CDT)
- Re: torsion angle (Mon Sep 06 2004 - 09:28:52 CDT)
- Re: Periodic display problem (Wed Aug 25 2004 - 01:52:26 CDT)
- Re: Periodic display problem (Tue Aug 24 2004 - 09:56:02 CDT)
- Re: Trajectory Files (Sun Aug 08 2004 - 13:36:35 CDT)
- Re: reading structure *.xyz (Tue Jul 20 2004 - 17:39:02 CDT)
- Re: loading .gz trajectory files (Tue Jul 20 2004 - 17:12:47 CDT)
- Re: Unit cell coordinates and radial distribution functions (Tue Jul 20 2004 - 01:29:03 CDT)
- visualization of electroly solvation shells (Mon Jul 19 2004 - 04:09:34 CDT)
- Re: Box of non-polar solvent (Fri Jul 16 2004 - 11:59:45 CDT)
- Re: Updated Bonding Connectivity each frame (Tue Jul 13 2004 - 15:28:17 CDT)
- Re: element Si (Fri Jul 09 2004 - 12:11:46 CDT)
- Re: width for triangle (Wed Jul 07 2004 - 09:06:32 CDT)
- Re: periodic display and space group and VMD (Tue Jul 06 2004 - 14:18:34 CDT)
- Re: your mail (Wed Jun 30 2004 - 16:39:38 CDT)
- Re: Average coordinates (Thu Jun 24 2004 - 23:48:36 CDT)
- Re: mpeg doesn't run on media player (Thu Jun 24 2004 - 23:27:22 CDT)
- Re: visualizing trr files (Fri Jun 18 2004 - 13:46:13 CDT)
- Re: Need a few testers for Linux version of VMD 1.8.3... (Fri Jun 11 2004 - 15:17:13 CDT)
- Re: CUBIC box of system (Thu Jun 03 2004 - 12:44:37 CDT)
- Re: display of electron density maps (Thu Jun 03 2004 - 11:50:29 CDT)
- Re: CUBIC box of system (Thu Jun 03 2004 - 07:22:09 CDT)
- Re: animating an iso-surface (Wed May 26 2004 - 15:48:49 CDT)
- Re: draw lines (Wed May 26 2004 - 01:01:05 CDT)
- Re: Iso-surfaces, VolumeSlices and tracing with VMD 1.8.2 (Mon May 24 2004 - 12:44:03 CDT)
- Re: Non-protein Multiple-Frame File (Mon May 24 2004 - 08:59:05 CDT)
- Re: changing the representation of all loaded molecules (Thu May 20 2004 - 13:35:08 CDT)
- Re: changing the representation of all loaded molecules (Thu May 20 2004 - 02:34:14 CDT)
- Re: Dynamic selection of residues in a trajectory (Wed May 19 2004 - 08:45:05 CDT)
- Re: some visualization challenges (Mon May 17 2004 - 15:07:43 CDT)
- some visualization challenges (Sun May 16 2004 - 14:03:11 CDT)
- Re: Surface rendering crashes PC (Tue May 11 2004 - 10:05:08 CDT)
- Re: variable atom number and dynamic bonds (Wed May 05 2004 - 13:22:24 CDT)
- Re: Coloring with an XYZ file (Wed May 05 2004 - 01:28:00 CDT)
- Re: error with top2psf (Wed Apr 21 2004 - 15:47:17 CDT)
- Re: xyz plugin (Tue Apr 20 2004 - 01:55:15 CDT)
- Re: xyz aluminium connectivity questions (Tue Apr 13 2004 - 11:27:30 CDT)
- Re: Centering of the view on one atom (Wed Mar 31 2004 - 14:12:51 CST)
- Re: Copying a selection (Mon Mar 22 2004 - 12:56:30 CST)
- Re: gziped files (Tue Mar 09 2004 - 06:19:39 CST)
- Re: waters within hydrophobic pore of protein (Mon Mar 01 2004 - 02:20:19 CST)
- Re: Hydrogen Bond Energy (Thu Feb 26 2004 - 03:46:52 CST)
- Re: tcl question (Sat Feb 07 2004 - 08:13:33 CST)
- Re: Spatial Distributionb Functions (Thu Feb 05 2004 - 04:12:31 CST)
- Re: PBC (Tue Jan 06 2004 - 16:49:44 CST)
- Re: PBC (Tue Jan 06 2004 - 12:19:50 CST)
- Announce: CPMD VMD visualization tutorial (Thu Dec 18 2003 - 13:25:56 CST)
- Re: DCD unit cell data (Thu Oct 16 2003 - 04:59:29 CDT)
- Re: saving bond-length information (Thu Sep 11 2003 - 06:36:48 CDT)
- Re: Graphics workstation and Xenon problems with VMD? (Wed Aug 27 2003 - 10:19:44 CDT)
- Re: Reg: No. of Frames (Mon Jul 28 2003 - 13:33:51 CDT)
- Re: Reg: No. of Frames (Mon Jul 28 2003 - 02:13:51 CDT)
AYTUG TUNCEL
- NAMD to Amber (Thu Apr 06 2006 - 08:46:10 CDT)
AyÅŸe Ã–zlem Aykut
- glycerol (Tue Oct 20 2009 - 03:13:57 CDT)
- B factor calculation (Tue Nov 04 2008 - 10:51:24 CST)
Ayþe Özlem Sezerman
- VMD open GL Display problem (Tue Feb 27 2007 - 06:52:19 CST)
B $B6Q
- (no subject) (Mon Feb 16 2004 - 19:44:43 CST)
B. Bennion
- Re: centering seection on screen (Thu Apr 17 2003 - 09:50:32 CDT)
- getting heavy atom contacts (Thu Mar 20 2003 - 12:40:59 CST)
- atomselect (Tue Mar 18 2003 - 16:03:05 CST)
- Re: Pls help me to render files with only traces of proteins! (Thu Feb 06 2003 - 13:23:01 CST)
- Re: Pls help me to render files with only traces of proteins! (Wed Feb 05 2003 - 21:13:34 CST)
- Re: compiling vmd... (Tue Jan 28 2003 - 10:09:33 CST)
- Re: rendering from VMD (Tue Dec 17 2002 - 15:56:45 CST)
- Re: rendering from VMD (Tue Dec 17 2002 - 14:36:07 CST)
- Building VMD on windows 2000 (Mon Dec 16 2002 - 15:35:51 CST)
- Re: CRD problems and CRD to DCD conversion (Wed Nov 13 2002 - 15:48:57 CST)
- helices in coil (Tue Oct 29 2002 - 18:24:13 CST)
- Re: core dump when launching vmd1.8a21 (Thu Oct 24 2002 - 20:30:05 CDT)
- Re: question on prmtop & prmcrd from leap (amber) (Fri Oct 18 2002 - 18:13:43 CDT)
- Re: molden xyz movie (Fri Oct 11 2002 - 00:40:52 CDT)
- Re: molden xyz movie (Thu Oct 10 2002 - 18:22:59 CDT)
- residue rotation within single pdb file (Sun Jul 07 2002 - 02:27:32 CDT)
- Plugin testing (Thu Jun 06 2002 - 12:07:05 CDT)
- Re: opengl libraries (Tue Nov 27 2001 - 15:18:45 CST)
- opengl libraries (Mon Nov 26 2001 - 12:23:49 CST)
- compiling problems (Mon Nov 26 2001 - 11:35:50 CST)
- Making UIobjects (Thu Oct 25 2001 - 11:13:27 CDT)
- Re: new user animation question (Thu Oct 04 2001 - 10:37:32 CDT)
- Re: new user animation question (Thu Oct 04 2001 - 00:47:08 CDT)
- Coloring Sections of Peptides (Wed May 16 2001 - 15:26:01 CDT)
- Re: Some newbie questions (Fri Apr 20 2001 - 10:40:20 CDT)
- animation and reps (Sat Mar 31 2001 - 01:40:43 CST)
- Molecule rotation (Thu Mar 08 2001 - 12:16:46 CST)
- removing unwanted residues (Thu Aug 31 2000 - 11:57:00 CDT)
- Re: animation (Wed Aug 30 2000 - 11:47:25 CDT)
- hbond calculations (Tue Aug 29 2000 - 10:49:16 CDT)
- PDB file output (Tue Jul 25 2000 - 11:59:40 CDT)
B.D Allen
- Re: CoordinateTransformation (Sun Sep 03 2006 - 20:38:38 CDT)
- Re: VMD & FC 4.0 (Wed Jul 13 2005 - 16:30:12 CDT)
- Iso-surfaces, VolumeSlices and tracing with VMD 1.8.2 (Mon May 24 2004 - 10:09:22 CDT)
Bala subramanian
- Re: viewing pca output (Fri May 02 2008 - 06:16:00 CDT)
- viewing pca output (Thu Apr 24 2008 - 08:09:43 CDT)
balas002_at_bama.ua.edu
- Re: Making movies (Wed Jun 30 2004 - 12:26:26 CDT)
- Re: Making movies (Tue Jun 29 2004 - 14:21:22 CDT)
- Re: Making movies (Tue Jun 29 2004 - 10:37:40 CDT)
- Re: Making movies (Mon Jun 28 2004 - 15:48:17 CDT)
- Re: Making movies (Mon Jun 28 2004 - 14:40:14 CDT)
- Re: Making movies (Wed Jun 23 2004 - 10:54:32 CDT)
- Making movies (Tue Jun 22 2004 - 16:15:27 CDT)
Balazs Jojart
- Re: helix axes (Tue Mar 31 2009 - 14:28:40 CDT)
- Re: Re: periodic boundary conditions (yes, i read the tutorials) (Tue Jul 29 2008 - 01:21:17 CDT)
Balu, Radhakrishnan (Cont, ARL/WMRD)
- RE: Making movies in VMD (UNCLASSIFIED) (Thu Dec 06 2007 - 15:28:03 CST)
- (UNCLASSIFIED) (Tue Nov 27 2007 - 09:18:18 CST)
Bamidele Adisa
- removing surrounding water molecules (Fri Feb 13 2004 - 16:03:15 CST)
BAN,YOUNG MIN
- Bond representation of coarse grained molecules (Wed Sep 02 2009 - 16:52:23 CDT)
Bankf of the West
- eTimeBanker Bill Pay Service (Wed Aug 24 2005 - 11:02:50 CDT)
Baofu Qiao
- Re: Bond representation of coarse grained molecules (Wed Oct 07 2009 - 02:21:14 CDT)
baogen duan
- load two or more molecuoles at one time (Tue Nov 15 2005 - 21:42:53 CST)
- add a new file to vmd1.8.3 on linux(FC4) (Sun Oct 30 2005 - 21:50:22 CST)
- add a new file type to VMD on linux(FC4) (Thu Oct 27 2005 - 22:32:59 CDT)
- Hello! (Sat Oct 08 2005 - 05:54:54 CDT)
- Hello! (Mon Sep 26 2005 - 08:52:05 CDT)
Baoqiang Cao
- write pdb and psf with missing segments in original pdb file (Tue Sep 27 2005 - 21:10:07 CDT)
- an inconsistance between psf file and coor file after equilibration (Sun May 22 2005 - 22:28:16 CDT)
Barbault Florent
- problem with 1.8.7 installation (Tue Aug 25 2009 - 04:50:41 CDT)
- Re: problem (Fri Feb 13 2009 - 05:24:39 CST)
- problem (Wed Feb 11 2009 - 02:41:52 CST)
barrett
- Apple VMD not showing gro file properly (Tue Feb 10 2004 - 07:56:50 CST)
- RE: movie making in batch mode (Fri Feb 06 2004 - 04:57:01 CST)
- movie making in batch mode (Tue Dec 16 2003 - 10:07:33 CST)
- RE: python: packages not found also... (Mon Sep 08 2003 - 05:44:12 CDT)
- RE: python: cannot find library (Thu Aug 07 2003 - 03:28:12 CDT)
- python: cannot find library (Wed Aug 06 2003 - 04:53:06 CDT)
Barry Bickmore
- trajectory analysis (Wed Sep 23 2009 - 11:39:08 CDT)
- bonds across periodic boundaries (Tue Oct 16 2007 - 08:53:09 CDT)
Barry Isralewitz
- Re: unable to animate alanine.dcd (Sat Dec 06 1997 - 07:30:28 CST)
- Re: your mail (Tue Jan 02 2007 - 12:21:16 CST)
- Re: [jrodgers78@gmail.com: outputing secondary structure from timeline] (Mon Jan 23 2006 - 15:16:42 CST)
- Re: aligntool (Thu Feb 13 2003 - 19:33:38 CST)
- Re: Animating Trajectories/NAMD Output files (Wed May 08 2002 - 11:37:05 CDT)
- Re: Animating Trajectories/NAMD Output files (Wed May 08 2002 - 11:01:26 CDT)
- Re: Animating Trajectories/NAMD Output files (Tue May 07 2002 - 22:15:21 CDT)
- Re: secondary structure (Tue Dec 11 2001 - 11:46:33 CST)
- Re: making a movie of trajectory file animation (Thu Nov 08 2001 - 15:51:55 CST)
- Re: fixing a molecule (Wed Aug 01 2001 - 17:40:06 CDT)
- Announce: ZoomSeq -- sequence browser for VMD (Thu Dec 28 2000 - 14:54:20 CST)
- Re: povray images allways perspective? (Thu Dec 14 2000 - 11:02:29 CST)
- Re: CCL:program for viewing MD (Mon Oct 23 2000 - 11:55:02 CDT)
- Re: Using VMD to edit dynamics output (Mon Oct 02 2000 - 01:07:39 CDT)
- Re: Prachi Singh's mail (Mon Jun 05 2000 - 16:19:59 CDT)
Bartek Dobrzelecki
- Labels (atom type, partial charge) (Thu Jul 17 2003 - 06:00:22 CDT)
Basak Isin
- Reference to SASA calculation in VMD (Tue Oct 18 2005 - 10:12:24 CDT)
Baumert, Uwe Dr.rer.nat.
- VMD 1.8.7 beta5 probs with NVIDIA Quadro FX3450/4000 graphic card (Mon Jun 22 2009 - 04:18:54 CDT)
baxy
- inserting protein into membrane (Thu May 17 2007 - 08:39:58 CDT)
- Sequences and BLAST searching (Wed Nov 15 2006 - 06:51:22 CST)
- Sequences and BLAST searching (Wed Nov 15 2006 - 06:47:08 CST)
bbickmore_at_comcast.net
- setting unit cell dimensions (Sun Oct 14 2007 - 23:07:50 CDT)
Ben Chern
- Re: Using namdenergy in batch mode to compute dihedral energies (Sun Apr 13 2008 - 20:49:26 CDT)
- Re: Compiling VMD under Windows XP (Thu Apr 03 2008 - 07:14:22 CDT)
- Re: Compiling VMD under Windows XP (Tue Apr 01 2008 - 20:26:36 CDT)
- Re: Compiling VMD under Windows XP (Tue Apr 01 2008 - 01:33:34 CDT)
- Re: Compiling VMD under Windows XP (Mon Mar 31 2008 - 21:39:41 CDT)
- Re: using cvs under Windows XP (Mon Mar 31 2008 - 10:21:11 CDT)
- using cvs under Windows XP (Mon Mar 31 2008 - 08:31:31 CDT)
- Compiling VMD under Windows XP (Mon Mar 31 2008 - 04:13:38 CDT)
- Re: Can VMD show the interactions between different structure part? (Thu Mar 27 2008 - 20:26:13 CDT)
- Re: Can VMD show the interactions between different structure part? (Thu Mar 27 2008 - 06:35:56 CDT)
- Can VMD show the interactions between different structure part? (Wed Mar 26 2008 - 22:20:57 CDT)
- Re: Can we get secondary structure from PDB files? (Wed Mar 26 2008 - 22:12:12 CDT)
- Re: Can we get secondary structure from PDB files? (Wed Mar 26 2008 - 20:44:00 CDT)
- Can we get secondary structure from PDB files? (Wed Mar 26 2008 - 04:02:04 CDT)
Ben Cornett
- 1.6.1 hotkey problem (Wed May 02 2001 - 13:05:47 CDT)
- Re: SGI O2 stereo problems (Thu Mar 09 2000 - 12:13:20 CST)
Ben Eisenbraun
- Re: Mac and cmd line (Mon Aug 24 2009 - 15:50:58 CDT)
Ben Roberts
- Closing filehandles in vmd tcl script (Thu Jan 20 2005 - 21:05:51 CST)
- Re: Unit cell coordinates and radial distribution functions (Thu Jul 22 2004 - 20:27:18 CDT)
- Unit cell coordinates and radial distribution functions (Mon Jul 19 2004 - 21:12:38 CDT)
ben rodriguez
- Displaying local water molecules throughout trajectory (Thu Feb 26 2009 - 14:47:26 CST)
- Unrecognized Chains in VMD for tetrameric protein (Thu Feb 19 2009 - 18:14:55 CST)
- Calculating pocket volume (Thu Aug 28 2008 - 16:37:55 CDT)
Beniamino Sciacca
- problem with vmd (Tue Mar 28 2006 - 13:44:37 CST)
Benjamin Bouvier
- Re: vmd mailing list (Fri Oct 16 2009 - 03:46:43 CDT)
- Re: model protein chain not displayed properly (Mon Sep 28 2009 - 14:54:09 CDT)
- Re: namd-l: how to write a command to close vmd in shell script? (Mon Aug 10 2009 - 03:07:38 CDT)
- Re: VMD and X forwarding to MacOS 10.5.7 (Fri Jun 12 2009 - 11:33:47 CDT)
- Re: VMD and X forwarding to MacOS 10.5.7 (Fri Jun 12 2009 - 10:45:37 CDT)
- Re: VMD and X forwarding to MacOS 10.5.7 (Fri Jun 12 2009 - 10:28:17 CDT)
- VMD and X forwarding to MacOS 10.5.7 (Fri Jun 12 2009 - 09:48:29 CDT)
- Re: get a PDB file from DCD file (Tue Jan 27 2009 - 09:49:51 CST)
- Re: odd render problems with Vista (Sun Jan 11 2009 - 14:20:04 CST)
- Re: script that reacts on movement of frameslider in vmd main (Mon Dec 01 2008 - 09:28:55 CST)
- Re: Per-frame 'graphics'? (Fri Oct 31 2008 - 13:36:24 CDT)
- Per-frame 'graphics'? (Fri Oct 31 2008 - 10:46:03 CDT)
- Re: reading multiples molecules. (Tue Oct 28 2008 - 06:15:45 CDT)
- Re: Improving VMD performance on Linux? (Mon Oct 20 2008 - 06:05:26 CDT)
- Re: Deleting frames / molecules does not free up memory! (Tue Oct 14 2008 - 11:34:44 CDT)
- Deleting frames / molecules does not free up memory! (Tue Oct 14 2008 - 10:26:55 CDT)
- Re: 3DConnexion SpaceNavigator in 1.8.7alpha30 on OS X (Wed Jul 30 2008 - 10:36:17 CDT)
- 3DConnexion SpaceNavigator in 1.8.7alpha30 on OS X (Wed Jul 30 2008 - 09:37:32 CDT)
Benjamin Goldsteen
- Re: Solutions for stereo - is CRT technology dead? (Mon May 22 2006 - 11:15:44 CDT)
- Re: Choice of a Linux machine for VMD and high-end computing (Wed Apr 06 2005 - 16:58:07 CDT)
- Re: stereo for XP and Linux (Wed Jan 12 2005 - 18:04:44 CST)
- Re: msms and vmd on amd athlon64. (Mon Mar 15 2004 - 14:18:16 CST)
- Re: color problem with Ati Fire GL E1 (Wed Mar 03 2004 - 22:23:31 CST)
- Re: vmd crashes after startup... (Wed Dec 03 2003 - 22:46:17 CST)
- Fwd: Re: graphics card (Sun Nov 30 2003 - 19:02:23 CST)
- Re: VMD 1.8.1 MacOSX running very slow on new G4 1 GHz Powerbook (Sun Nov 09 2003 - 20:49:02 CST)
Benjamin Hall
- Re: Batch mode on Mac OS 10.5.3 (Wed Jun 04 2008 - 08:26:23 CDT)
- Batch mode on Mac OS 10.5.3 (Tue Jun 03 2008 - 05:16:52 CDT)
- Measuring fit exclusively in 1 plane (Thu May 01 2008 - 04:59:04 CDT)
- Re: Re: porcupine plot (Thu Apr 03 2008 - 12:00:11 CDT)
- Re: porcupine plot (Wed Apr 02 2008 - 17:30:49 CDT)
Benjamin SCHWARZ
- loading a new molecule without changing the view (Fri Jan 06 2006 - 08:01:05 CST)
Benjamin Stauch
- parallel VMD (Tue Sep 16 2008 - 07:47:16 CDT)
BERGY
- how to identify DNA-protein interaction interface (Thu Apr 24 2008 - 05:42:53 CDT)
Berit Hinnemann
- Re: Other color scales than the predefined ones? (Thu Nov 27 2008 - 03:38:46 CST)
- Other color scales than the predefined ones (Wed Nov 26 2008 - 09:52:23 CST)
- Re: Movie of a xyz trajectory (Wed Nov 26 2008 - 07:03:06 CST)
- Other color scales than the predefined ones? (Wed Nov 26 2008 - 07:00:17 CST)
- Nvidia graphics card with VMD (Fri Oct 20 2006 - 07:13:42 CDT)
- Computer for 3D visualization (Wed Sep 20 2006 - 04:45:58 CDT)
- Volume slices of Gaussian Cube Files: Color scale (Thu Jun 29 2006 - 13:42:05 CDT)
- RE: Gaussian Cube file with VMD (Tue May 23 2006 - 11:00:36 CDT)
- Gaussian Cube file with VMD (Mon May 22 2006 - 18:29:12 CDT)
Bernardo Sosa Padilla Araujo
- radius of gyration units (Tue Nov 03 2009 - 15:08:36 CST)
Bernd Doser
- Problems with tcl/tk 8.5 (Tue Jan 20 2009 - 02:08:05 CST)
Bernhard Knapp
- H-bonds (Thu Apr 02 2009 - 06:27:25 CDT)
- defintion of alpha helix in vmd? (Tue Dec 16 2008 - 03:30:03 CST)
- vmd-rmsd-color-tool (Fri Aug 01 2008 - 02:27:48 CDT)
Bertie Earl
- Spring quality watches offer (Tue Apr 29 2008 - 19:30:10 CDT)
Bertrand P. S. Russell
- Re: installation problem vmd 1.8.6 on fedora 3 (Sat Feb 09 2008 - 05:22:24 CST)
bertrand russell
- superimposing two structures and getting the coordinates (Tue Feb 20 2007 - 11:52:03 CST)
- Re: How to save the snapshot of my protein? (Fri Feb 09 2007 - 03:58:53 CST)
- How to save the snapshot of my protein? (Fri Feb 09 2007 - 01:24:54 CST)
- How to make movie with .crd files? (Wed Dec 13 2006 - 02:36:23 CST)
- VMD - unable to create OpenGL (Tue Nov 07 2006 - 03:31:29 CST)
- differentiating solvent molecules...... (Tue Oct 17 2006 - 12:44:28 CDT)
- VMD Installation Help (Tue Sep 26 2006 - 12:05:26 CDT)
- Installing VMFD in kubuntu.............. (Wed Aug 30 2006 - 10:59:37 CDT)
Beth Ashbridge
- superimposing (Tue Nov 01 2005 - 08:03:15 CST)
BETTLER Emmanuel
- cartoon representation of 1crn (Fri Apr 23 2004 - 11:25:46 CDT)
- is VMD compatible with NVIDIA 3D stereo drivers ? (Fri Mar 12 2004 - 08:47:12 CST)
- several questions, (Tue Sep 26 2000 - 07:01:11 CDT)
Bhargava
- Re: On solvate plugin (Mon Jun 23 2008 - 09:14:05 CDT)
Bhaskar Jyoti Borah
- Re: exporting xyz file (Thu Jul 12 2007 - 11:19:25 CDT)
- Re: shifting of the origin (Thu Jul 12 2007 - 01:07:36 CDT)
- exporting xyz file (Thu Jul 12 2007 - 01:38:58 CDT)
- Re: shifting of the origin (Wed Jul 11 2007 - 23:33:22 CDT)
- Re: shifting of the origin (Wed Jul 11 2007 - 11:24:15 CDT)
- shifting of the origin (Tue Jul 10 2007 - 23:49:15 CDT)
- Re: need help (Tue Jul 10 2007 - 01:19:58 CDT)
- need help (Mon Jul 09 2007 - 05:25:50 CDT)
Biff Forbush
- joystick, win32 simple interface (Tue Jun 23 2009 - 18:32:57 CDT)
BIN ZHANG
- Re: drawing waterbox (Thu Aug 27 2009 - 11:02:46 CDT)
- Re: Moving Molecule (Mon Aug 24 2009 - 11:21:41 CDT)
- algorithm for command *within* (Thu Jul 16 2009 - 11:29:43 CDT)
- running vmd on computer node (Mon Jun 29 2009 - 12:55:08 CDT)
- Re: main window missing? (Wed May 27 2009 - 16:36:07 CDT)
- Re: main window missing? (Wed May 27 2009 - 15:49:40 CDT)
- main window missing? (Wed May 27 2009 - 15:17:40 CDT)
- Re: namdenergy (Mon May 11 2009 - 12:29:37 CDT)
- namdenergy (Thu May 07 2009 - 17:26:23 CDT)
- Re: setbonds (Wed Apr 22 2009 - 14:53:11 CDT)
- Re: density profiles (Wed Apr 22 2009 - 12:25:59 CDT)
- setbonds (Tue Apr 21 2009 - 23:01:35 CDT)
- draw command with different material (Thu Feb 26 2009 - 23:31:08 CST)
- Re: multiple colors for a single atom (Mon Feb 23 2009 - 11:55:48 CST)
- multiple colors for a single atom (Mon Feb 23 2009 - 00:05:50 CST)
- Re: helicity score? (Thu Feb 19 2009 - 15:14:45 CST)
- Re: Cannot read MSMS facet file (Mon Feb 16 2009 - 17:05:31 CST)
- Cannot read MSMS facet file (Sun Feb 15 2009 - 23:54:52 CST)
- pictures with frame (Tue Feb 03 2009 - 01:40:32 CST)
- helicity score? (Thu Jan 15 2009 - 23:39:21 CST)
- Re: beta column format in PDB (Wed Dec 24 2008 - 14:57:47 CST)
- beta column format in PDB (Wed Dec 24 2008 - 13:41:23 CST)
- How to get all the angle combinations? (Wed Dec 17 2008 - 23:07:16 CST)
- How to get number of electrons of an atom in VMD? (Mon Dec 08 2008 - 15:31:42 CST)
- Re: CG bead definition (Mon Nov 24 2008 - 18:24:35 CST)
- CG bead definition (Sun Nov 23 2008 - 23:56:12 CST)
- Re: how to run catdcd from within a proc (Mon Nov 17 2008 - 11:25:32 CST)
- intersurf in vmd (Sat Oct 11 2008 - 14:58:14 CDT)
- lipid tail selection (Sun Oct 05 2008 - 01:16:45 CDT)
- TAB key in vmd terminal (Thu Oct 02 2008 - 23:32:00 CDT)
biocore_at_ks.uiuc.edu
- ANN: BioCoRE now includes remote job submission (Fri Mar 30 2001 - 13:26:32 CST)
Biomolecular Simulations Congress 2005
- Biomolecular Simulations Meeting Bordeaux, 2&3 Sept. 2005 (Tue Mar 22 2005 - 08:19:24 CST)
Bishop, Thomas C
- VMD on Suse 11.1 w/ NVIDIA dies. (Fri Sep 04 2009 - 17:52:35 CDT)
- RE: Periodic Bonding (Thu Aug 13 2009 - 14:46:24 CDT)
- RE: Load multiple files (Thu Feb 12 2009 - 11:18:57 CST)
- Re: Re: namd-l: Truncated Octahedron for VMD and NAMDsimulation (Fri May 16 2008 - 13:39:16 CDT)
bizoniusz_at_o2.pl
- trajectory2 (Mon Feb 06 2006 - 14:55:20 CST)
- trajectory (Mon Feb 06 2006 - 12:02:27 CST)
- rdf.tcl one more time (Mon Oct 17 2005 - 10:19:28 CDT)
- RDF.tcl (Fri Oct 14 2005 - 07:02:26 CDT)
Bjoern Olausson
- Re: Curious about analytical capabilities of VMD (Mon Jul 06 2009 - 07:10:37 CDT)
- Re: Curious about analytical capabilities of VMD (Wed Jul 01 2009 - 07:19:39 CDT)
- Re: Curious about analytical capabilities of VMD (Mon Jun 29 2009 - 05:29:33 CDT)
- Curious about analytical capabilities of VMD (Fri Jun 26 2009 - 03:48:05 CDT)
- Re: Transparency settings (Thu Jun 11 2009 - 06:09:15 CDT)
- Re: Transparency settings (Wed Jun 10 2009 - 10:29:08 CDT)
- Transparency settings (Wed Jun 10 2009 - 09:13:13 CDT)
Bjoern Windshuegel
- viewing insight trajectories with vmd (Tue Jun 25 2002 - 01:29:15 CDT)
Björn Windshügel
- Rotation of molecules (Tue Dec 02 2008 - 08:20:30 CST)
- Loading multiple molecules in one step / "Apply changes automatically" (Fri Oct 21 2005 - 09:54:59 CDT)
Blake Charlebois
- RE: overlaying more than 2 molecules (Wed Aug 17 2005 - 12:57:30 CDT)
- RE: measuring rotation of protein about an axis (Tue Jul 19 2005 - 11:28:59 CDT)
- RE: (Mon Jul 18 2005 - 16:26:56 CDT)
- RE: Script for automated selection (Mon Jun 20 2005 - 12:28:39 CDT)
- RE: namd-l: tcl question (Thu Jun 16 2005 - 22:32:39 CDT)
- RE: how to write out the coordinates of center of mass of a particularresidue (Wed Jun 01 2005 - 21:39:49 CDT)
- RE: Any way for comparing two structures?? (Tue May 31 2005 - 10:50:32 CDT)
- RE: Total charge query? (Fri May 13 2005 - 17:28:41 CDT)
- RE: Autoionize / SODIUM (Mon Jan 24 2005 - 17:04:58 CST)
- Autoionize / SODIUM (Sun Jan 16 2005 - 12:14:04 CST)
bo baker
- Re: vmd crashes (Mon Mar 09 2009 - 19:09:59 CDT)
- vmd crashes (Mon Mar 09 2009 - 04:49:42 CDT)
- Re: select atoms (Mon Mar 02 2009 - 18:30:29 CST)
- select atoms (Sun Mar 01 2009 - 22:18:42 CST)
- Re: delete residues from trajectory (Sat Feb 28 2009 - 23:06:17 CST)
- delete residues from trajectory (Sat Feb 28 2009 - 03:44:06 CST)
- delete residues from trajectory (Sat Feb 28 2009 - 03:46:20 CST)
- Re: Atom distances from trajotory (Sat Feb 14 2009 - 17:16:27 CST)
- Atom distances from trajotory (Thu Feb 12 2009 - 23:50:21 CST)
- Atom distances from trajotory (Thu Feb 12 2009 - 03:27:20 CST)
- Load multiple files (Wed Feb 11 2009 - 22:43:35 CST)
- Re: Atomselect in NAMD GUI (Wed Feb 11 2009 - 16:01:37 CST)
- Re: Atomselect in NAMD GUI (Sun Feb 08 2009 - 16:17:15 CST)
- Atomselect in NAMD GUI (Thu Feb 05 2009 - 05:02:45 CST)
- Problem with Install (Fri Jan 16 2009 - 05:12:34 CST)
- VMD for Linux (Mon Jan 12 2009 - 05:14:50 CST)
- Re: QM Geometry optimization (Wed Dec 17 2008 - 12:30:08 CST)
- QM Geometry optimization (Tue Dec 16 2008 - 23:59:49 CST)
- convert THR and SER to the phosphorylated forms (Tue Oct 21 2008 - 19:06:11 CDT)
- Interface Propensity (Wed Sep 17 2008 - 05:56:20 CDT)
- Re: save selected residues (Mon Aug 11 2008 - 06:31:12 CDT)
- save selected residues (Sun Aug 10 2008 - 06:04:37 CDT)
- Re: Problem with saving coordinate (Sun Sep 02 2007 - 20:18:13 CDT)
- Re: Problem with saving coordinate (Sat Sep 01 2007 - 18:49:57 CDT)
- Re: Problem with saving coordinate (Fri Aug 31 2007 - 01:55:26 CDT)
- Problem with saving coordinate (Thu Aug 30 2007 - 22:44:57 CDT)
Bo Højen Justensen
- SV: average area per lipid (Tue Mar 04 2008 - 02:33:11 CST)
- VS: average area per lipid (Mon Mar 03 2008 - 15:10:09 CST)
bo liu
- Re: Autoionize plugin (Wed Nov 19 2008 - 08:42:58 CST)
- Re: Catdcd? (Fri Oct 17 2008 - 00:01:59 CDT)
- Re: Windows version: Loading/writing files (Mon Oct 13 2008 - 09:50:41 CDT)
- Re: atom type (Fri Oct 03 2008 - 06:51:22 CDT)
- Re: Projection of a vector on to another. (Sat Sep 20 2008 - 06:09:46 CDT)
- Re: Projection of a vector on to another. (Fri Sep 19 2008 - 23:03:42 CDT)
- Re: namd-l: Re: counting gas molecules inside the nanotube (Fri Sep 19 2008 - 11:38:19 CDT)
- Re: Merge psf and pdb (Wed Sep 03 2008 - 00:17:13 CDT)
- Re: Merge psf and pdb (Tue Sep 02 2008 - 10:02:26 CDT)
- Re: TXT program editor (Fri Aug 29 2008 - 03:17:57 CDT)
- Re: namd-l: diffusion coefficient from rmsd (Thu Aug 28 2008 - 01:38:38 CDT)
- questions relating to VolMapTool (Wed Jul 23 2008 - 02:35:18 CDT)
- Fwd: memory overflow problem of Tcl scripting when dealing with trajectories(sorry for cross mailing...) (Wed Jul 16 2008 - 03:18:43 CDT)
- Re: namd-l: Energy plot script (Thu May 15 2008 - 13:00:23 CDT)
Boaz Shaanan
- Re: Stereo in linux/oxygen gvx1/xig driver (Thu Jan 24 2002 - 03:30:25 CST)
- Stereo in linux/oxygen gvx1/xig driver (Sat Jan 19 2002 - 06:35:50 CST)
Bob Johnson
- Matrix: Warning: no convergence (0.00000000<390.26229858 after 1000 iterations). (Tue Nov 03 2009 - 14:49:29 CST)
- Re: Unable to find Stride output file: /usr/tmp/... (Tue Oct 27 2009 - 12:42:06 CDT)
- Unable to find Stride output file: /usr/tmp/... (Tue Oct 27 2009 - 12:22:03 CDT)
- Re: Unable to find Stride output file: /usr/tmp/... (Tue Oct 27 2009 - 12:47:55 CDT)
- Storing multiple values in the user field (Fri Sep 28 2007 - 16:15:05 CDT)
- Amber patches for Auto PSF generator (Wed Jun 27 2007 - 11:55:44 CDT)
- Using VolMap tool for charge density visualization (Fri Jun 01 2007 - 09:59:47 CDT)
- RMSD fitting for molecules adsorbed to surfaces (Thu May 10 2007 - 16:12:09 CDT)
- Re: Scripts to unwrap PBC from REMD trajectory (Fri Mar 16 2007 - 09:05:18 CDT)
- Scripts to unwrap PBC from REMD trajectory (Thu Mar 15 2007 - 16:08:50 CDT)
- Delete Volume Maps via Script (Wed Feb 28 2007 - 18:36:43 CST)
- Calculate VolMap for every frame by a script (Tue Feb 27 2007 - 16:21:12 CST)
- Reading box info. from PQR file (Mon Oct 30 2006 - 10:02:43 CST)
- Error in visualizing the 5 prime end of DNA strand (Mon Aug 29 2005 - 10:56:06 CDT)
- VMD fails to run (Sat Aug 20 2005 - 21:43:55 CDT)
- Periodic boundary conditions (Thu Aug 18 2005 - 12:00:19 CDT)
- Problem with DNA bonds (Mon Aug 15 2005 - 13:54:28 CDT)
- Visualizing an infinite carbon nanotube (Mon Aug 15 2005 - 13:23:44 CDT)
- Draw Bonds (Mon Aug 08 2005 - 10:42:13 CDT)
- Video card driver (Thu Aug 04 2005 - 13:56:44 CDT)
Bob Milius
- Re: vmd, linux & dri (fwd) (Fri Jan 12 2001 - 19:39:34 CST)
- Re: vmd, linux & dri (fwd) (Fri Jan 12 2001 - 19:29:20 CST)
Bobbie Horton
- Play at the world's leading online casino..... (Thu Apr 10 2008 - 01:28:24 CDT)
Bogdan Costescu
- Re: charmm binary ele. pot. (Mon Mar 09 2009 - 13:16:00 CDT)
- Re: duration of video mpeg (Mon Dec 04 2006 - 05:18:53 CST)
- Re: loading gzipped trajectories into vmd (Tue Aug 29 2006 - 09:38:42 CDT)
- Re: Solutions for stereo - is CRT technology dead? (Mon May 22 2006 - 06:27:49 CDT)
- Re: libcprts.so.6 not found by VMD on RedHat EL3 (ia64). (Mon Apr 10 2006 - 11:23:46 CDT)
- Re: shutter glasses with VMD (Thu Mar 02 2006 - 07:05:36 CST)
- Re: Tachyon and text rendering (Thu Feb 23 2006 - 14:37:56 CST)
- Re: vmd-1.8.4b10/Linux amd64 only libstdc++.so.6 dependancy (Fri Feb 10 2006 - 12:05:03 CST)
- Re: vmd-1.8.4b10/Linux amd64 only libstdc++.so.6 dependancy (Thu Feb 09 2006 - 11:43:52 CST)
- Re: vmd-1.8.4b10/Linux amd64 only libstdc++.so.6 dependancy (Thu Feb 09 2006 - 10:51:55 CST)
- Re: compilation from source: make error message (Mon Dec 12 2005 - 06:04:24 CST)
- Re: compilation from source: first attempt failed (Fri Dec 09 2005 - 10:30:07 CST)
- Re: babel compilation error (Fri Dec 09 2005 - 10:04:22 CST)
- Re: MSMS problem (Wed Dec 07 2005 - 06:56:06 CST)
- Re: MSMS problem (Tue Dec 06 2005 - 11:31:53 CST)
- Re: MSMS problem (Mon Dec 05 2005 - 13:21:19 CST)
- Re: dcd large files, charmm-VMD (Fri Apr 22 2005 - 11:08:13 CDT)
- Re: dcd large files, charmm-VMD (Fri Apr 22 2005 - 08:09:11 CDT)
- Re: compressed trajectory support (Mon Apr 18 2005 - 09:57:14 CDT)
- Re: compressed trajectory support (Mon Apr 18 2005 - 09:20:00 CDT)
- Re: 3D/stereo hardware recommendations wanted!!! (Fri Jan 14 2005 - 04:51:45 CST)
- Re: Fwd: linux FC3 VMD vs insightII conflict (Wed Jan 12 2005 - 11:08:45 CST)
- Re: vmd not starting up on Fedora core 3 linux , nVidia quadro 980 XGL, nVidia 6629 driver (Tue Jan 11 2005 - 10:42:25 CST)
- Re: vmd not starting up on Fedora core 3 linux , nVidia quadro 980 XGL, nVidia 6629 driver (Mon Jan 10 2005 - 09:56:14 CST)
- Re: VMD on Linux Fedora Core 2 (Wed Oct 13 2004 - 09:11:15 CDT)
- Re: vmd psfgen problem with CHARMM (Thu Jul 15 2004 - 16:21:22 CDT)
- Re: vmd psfgen problem with CHARMM (Thu Jul 15 2004 - 13:46:26 CDT)
- Re: vmd psfgen problem with CHARMM (Thu Jul 15 2004 - 12:41:16 CDT)
- Re: mpeg doesn't run on media player (Fri Jun 25 2004 - 04:54:56 CDT)
- RE: How to read i8(64 bit) .dcd file with 32 bit VMD (Mon May 24 2004 - 03:24:33 CDT)
- RE: How to read i8(64 bit) trajectory (.dcd) file with 32 bit VMD (Mon May 24 2004 - 03:32:12 CDT)
- Re: vmd 1.8.2 - slow on linux (Wed May 12 2004 - 07:26:11 CDT)
- Re: dcd with fixed atoms (Wed Mar 17 2004 - 13:05:14 CST)
- Re: digest form (Wed Mar 17 2004 - 05:10:43 CST)
- Re: random graphics outages on startup (Wed Feb 04 2004 - 10:47:59 CST)
- RE: dcd reading error (Sat Jan 03 2004 - 10:07:49 CST)
- Re: quicktime/mpeg movies (Fri Jun 20 2003 - 14:30:24 CDT)
- Re: double image for one eye with crystal eyes stereo (Thu Jun 12 2003 - 11:02:01 CDT)
- Re: double image for one eye with crystal eyes stereo (Thu Jun 12 2003 - 10:41:47 CDT)
- Re: double image for one eye with crystal eyes stereo (Thu Jun 12 2003 - 09:34:36 CDT)
- Re: Some comments about stereo with nvidia cards & shutter glasses (Mon May 05 2003 - 11:58:14 CDT)
- Re: Raytracing with tachyon/povray because of pb with raster3d (Tue Nov 26 2002 - 12:58:40 CST)
- Re: Raytracing with tachyon/povray because of pb with raster3d (Tue Nov 26 2002 - 11:41:38 CST)
- Re: SGI O2 stereo problems (Thu Mar 09 2000 - 08:00:27 CST)
- Re: SGI O2 stereo problems (Wed Mar 08 2000 - 14:43:38 CST)
- SGI O2 stereo problems (Tue Feb 15 2000 - 13:33:15 CST)
bonicoli_at_loria.fr
- Re: property iterate over a range (representation / draw style) (Wed Feb 04 2009 - 10:04:40 CST)
- property iterate over a range (representation / draw style) (Tue Feb 03 2009 - 11:16:12 CST)
bora erdemli
- BPS Meeting @ Baltimore (Mon Mar 05 2007 - 19:16:40 CST)
- rmsf calculations (Tue Feb 27 2007 - 01:42:25 CST)
- Re: measure hbonds (Fri Jan 28 2005 - 06:38:12 CST)
- BOND CP2 - CT2 IN PARAMETER FILES (Thu Oct 28 2004 - 16:42:09 CDT)
- Re: measure fit error?? (Fri Oct 08 2004 - 12:29:22 CDT)
- Re: problem in autoionize (Fri Oct 01 2004 - 00:23:58 CDT)
- Re: problem in autoionize (Thu Sep 30 2004 - 08:00:18 CDT)
- Re: problem in autoionize (Thu Sep 30 2004 - 01:38:51 CDT)
- problem in autoionize (Wed Sep 29 2004 - 08:43:05 CDT)
- rmsd calculation and alignment (Tue Sep 28 2004 - 07:28:15 CDT)
- torsion angle (Mon Sep 06 2004 - 06:18:22 CDT)
- rmsd problem,script and version (Fri Sep 03 2004 - 00:23:42 CDT)
- rmsd problem (Thu Aug 26 2004 - 14:10:05 CDT)
- Re: monitoring h bonds (Tue Aug 24 2004 - 06:52:50 CDT)
- monitoring h bonds (Wed Aug 18 2004 - 08:59:56 CDT)
Boris Steipe
- Re: conformations of a linker (Fri Oct 31 2008 - 16:39:17 CDT)
- Re: atom type (Wed Oct 01 2008 - 11:37:48 CDT)
- Re: multiple attempts before vmd starts up (Thu Oct 18 2007 - 13:47:21 CDT)
- Re: multiple attempts before vmd starts up (Thu Oct 18 2007 - 00:07:55 CDT)
bozell, joe
- Problems with Mac OSX VMD and certain PDB files (Wed Nov 24 2004 - 12:34:47 CST)
brad noyes
- Re: compile VMD on freebsd 4.8 (Tue Sep 09 2003 - 21:05:44 CDT)
- Re: compile VMD on freebsd 4.8 (Tue Sep 09 2003 - 16:43:10 CDT)
- Re: compile VMD on freebsd 4.8 (Thu Jul 24 2003 - 17:54:42 CDT)
- Re: compile VMD on freebsd 4.8 (Wed Jul 23 2003 - 20:59:27 CDT)
- render to png, and ppm (Sun Jul 13 2003 - 20:47:15 CDT)
- Re: implicit casting (Fri May 23 2003 - 15:25:40 CDT)
- implicit casting (Fri May 23 2003 - 15:14:27 CDT)
- Re: compiling/porting vmd (Fri May 23 2003 - 01:30:18 CDT)
- compiling/porting vmd (Thu May 22 2003 - 22:23:25 CDT)
Bram Stolk
- Re: L/R lighting discrepancy (Thu Nov 10 2005 - 06:48:47 CST)
- Re: L/R lighting discrepancy (Wed Nov 09 2005 - 04:51:10 CST)
- Re: L/R lighting discrepancy (Tue Nov 08 2005 - 14:01:25 CST)
- L/R lighting discrepancy (Tue Nov 08 2005 - 10:44:39 CST)
- Re: IRIX6 build from CVS (Tue Nov 08 2005 - 10:20:10 CST)
- IRIX6 build from CVS (Tue Nov 08 2005 - 03:28:25 CST)
Breght Boschker
- Eye position / camera position (Thu Jun 02 2005 - 05:27:49 CDT)
Brendan O'Malley
- Postdoctoral positions in Australia (Wed Nov 06 2002 - 04:55:13 CST)
- VMD and Trackers (Sun Jul 14 2002 - 19:22:45 CDT)
- Tracking devices and VMD (Mon Jun 17 2002 - 04:15:07 CDT)
- vmd stereo (Sun Oct 29 2000 - 19:27:16 CST)
Brett Pemberton
- Re: VMD crashed due to: vmd_LINUXAMD64: indirect_vertex_array.c:659: emit_DrawArrays_old: Assertion `elements_per_request >= count' failed (Tue Jun 27 2006 - 22:37:59 CDT)
- Re: VMD crashed due to: vmd_LINUXAMD64: indirect_vertex_array.c:659: emit_DrawArrays_old: Assertion `elements_per_request >= count' failed (Tue Jun 27 2006 - 20:59:56 CDT)
- Re: VMD crashed due to: vmd_LINUXAMD64: indirect_vertex_array.c:659: emit_DrawArrays_old: Assertion `elements_per_request >= count' failed (Tue Jun 27 2006 - 18:57:15 CDT)
- VMD crashed due to: vmd_LINUXAMD64: indirect_vertex_array.c:659: emit_DrawArrays_old: Assertion `elements_per_request >= count' failed (Tue Jun 27 2006 - 00:52:41 CDT)
Brian Bennion
- Re: X_ChangeProperty: BadValue (integer parameter out of range for operation) 0x40 (Mon Jan 07 2008 - 10:58:36 CST)
- Re: Installation and running on VMD on Debian Testing System (Wed Oct 03 2007 - 09:51:54 CDT)
- Re: Loading up PDB files in absolute coordinates (Fri Jun 22 2007 - 15:34:28 CDT)
- Re: calculating b-factors from trajectories (Wed May 23 2007 - 10:34:57 CDT)
- Re: superimposing two structures and getting the coordinates (Tue Feb 20 2007 - 14:44:17 CST)
- autopsf errors in vmd1.8.5 (Mon Oct 30 2006 - 12:09:54 CST)
- Re: about maximum number of atoms (Wed Aug 02 2006 - 17:55:28 CDT)
- Re: RMSF ? (Wed Jun 21 2006 - 10:10:08 CDT)
- Re: fading rep scripts (Mon Jun 12 2006 - 17:48:21 CDT)
- fading rep scripts (Mon Jun 12 2006 - 16:41:38 CDT)
- Re: Possible error in aligning/computing RMSD of 2 molecules with three or two atoms (Thu Mar 23 2006 - 17:22:15 CST)
- Re: Poor Hydrogen Placement in AutoPSF (Mon Mar 20 2006 - 16:54:20 CST)
- Re: Poor Hydrogen Placement in AutoPSF (Mon Mar 20 2006 - 10:27:52 CST)
- Poor Hydrogen Placement in AutoPSF (Fri Mar 17 2006 - 16:39:15 CST)
- batchmode use of "labels" functions? (Fri Feb 10 2006 - 11:59:32 CST)
- Re: Generating an average structure from a trajectory (Fri Sep 16 2005 - 18:22:43 CDT)
- Re: catdcd vs readdcd.h error checking (Sat Aug 20 2005 - 11:22:16 CDT)
- catdcd vs readdcd.h error checking (Fri Aug 19 2005 - 11:53:55 CDT)
- Re: Adjacent surface? (Thu Aug 18 2005 - 14:24:07 CDT)
- Re: help with BIOMT (Fri Aug 12 2005 - 15:52:25 CDT)
- Re: namd-l: volume from VMD and NAMD different? (Fri Aug 05 2005 - 17:38:27 CDT)
- volume from VMD and NAMD different? (Fri Aug 05 2005 - 16:12:34 CDT)
- Re: Video card driver (Thu Aug 04 2005 - 17:05:05 CDT)
- vmd mpg movies not working in office 2000 (Tue Jul 12 2005 - 17:36:52 CDT)
- Re: Problem with "bigdcd" (Thu Apr 28 2005 - 12:33:59 CDT)
- Re: namd-l: Re: Interactive Simulations, ligand size limits.... (Thu Apr 28 2005 - 12:01:32 CDT)
- Re: Catching error info before it shuts down ... (Fri Feb 18 2005 - 10:01:32 CST)
- Re: PBS script for LINUX cluster (Tue Jan 18 2005 - 10:25:05 CST)
- Re: ERROR) Failed to create Surf atom radii input file (Tue Dec 28 2004 - 11:16:46 CST)
- Re: (Tue Dec 14 2004 - 12:47:07 CST)
- RE: MSMS variable (Tue Nov 30 2004 - 16:48:21 CST)
- RE: MSMS variable (Tue Nov 30 2004 - 13:15:47 CST)
- RE: MSMS variable (Wed Nov 24 2004 - 16:23:55 CST)
- Re: MSMS variable (Wed Nov 24 2004 - 10:13:23 CST)
- Re: Question about using psfgen on protein 4HVP (Tue Oct 26 2004 - 15:02:51 CDT)
- Re: VMD on Linux Fedora Core 2 (Wed Oct 13 2004 - 12:26:39 CDT)
- Re: PSFGEN problem (Fri Oct 08 2004 - 21:58:07 CDT)
- Re: dihedral angles at the ends (Tue Oct 05 2004 - 11:44:53 CDT)
- Re: Re: Installation on vmd-1.8 on mandrake10 (Fri Aug 27 2004 - 10:06:03 CDT)
- Re: makefile not generated from configure (Thu Aug 19 2004 - 12:24:13 CDT)
- Re: Solvating with TIP4 or SPC (Wed Aug 04 2004 - 10:43:19 CDT)
- Re: Box of non-polar solvent (Fri Jul 16 2004 - 13:35:28 CDT)
- Re: Box of non-polar solvent (Fri Jul 16 2004 - 13:13:01 CDT)
- Re: CONECT in pdb files (Fri Jul 02 2004 - 18:01:58 CDT)
- Re: Compile from Source Crashes 5/11/04 (Tue May 11 2004 - 16:26:33 CDT)
- Re: vmd 1.8.2 - slow on linux (Tue May 11 2004 - 15:25:45 CDT)
- Re: Compile from Source Crashes 5/11/04 (Tue May 11 2004 - 11:22:20 CDT)
- RE: Selection problem on TkCon (Tue May 04 2004 - 13:20:20 CDT)
- RE: Selection problem on TkCon (Mon May 03 2004 - 14:14:10 CDT)
- RE: Selection problem on TkCon (Mon May 03 2004 - 10:14:02 CDT)
- Re: vmd linux binary / native build on netbsd (Mon Apr 19 2004 - 12:25:21 CDT)
- Re: vmd linux binary / native build on netbsd (Fri Apr 16 2004 - 13:12:13 CDT)
- Re: Webpdb crashing (Fri Apr 16 2004 - 13:13:06 CDT)
- Re: Webpdb crashing (Fri Apr 16 2004 - 11:22:50 CDT)
- Re: Webpdb crashing (Fri Apr 16 2004 - 11:48:55 CDT)
- Re: psfgen question (Thu Mar 25 2004 - 11:42:45 CST)
- Re: Solvate Package (Wed Mar 17 2004 - 11:39:15 CST)
- Re: loading PDB+PSF (Tue Mar 16 2004 - 11:00:18 CST)
- Re: VMD as command line interface (Thu Mar 11 2004 - 10:24:31 CST)
- RE: gziped files (Tue Mar 09 2004 - 13:38:44 CST)
- RE: gziped files (Tue Mar 09 2004 - 13:29:03 CST)
- Re: gziped files (Tue Mar 09 2004 - 11:08:55 CST)
- Re: numeric python (Mon Mar 08 2004 - 10:07:17 CST)
- Re: athlon64 version of vmd (Fri Mar 05 2004 - 16:30:57 CST)
- Re: Non-serious query (Wed Mar 03 2004 - 11:23:33 CST)
- Re: removing surrounding water molecules (Fri Feb 13 2004 - 16:53:24 CST)
- Re: attempting to source a script (Wed Feb 11 2004 - 16:49:41 CST)
- Re: bigdcd (Wed Nov 05 2003 - 17:52:38 CST)
- Re: installation problem (Tue Nov 04 2003 - 10:16:20 CST)
- Re: secondary structure update (Mon Nov 03 2003 - 11:19:28 CST)
- Re: secondary structure update (Fri Oct 31 2003 - 12:18:34 CST)
- Re: secondary structure update (Fri Oct 31 2003 - 10:12:40 CST)
- Re: accessing VMD help (Fri Oct 31 2003 - 10:14:42 CST)
- Re: VMD and Chromium (Thu Oct 30 2003 - 14:46:37 CST)
- Re: aminoacid mutation (Tue Oct 28 2003 - 10:22:38 CST)
- Re: vmd 1.8.2b3 (September 16, 2003) on freebsd (Tue Sep 16 2003 - 23:05:07 CDT)
- Re: AtomLexer/lex.yy.c error (Tue Sep 16 2003 - 10:37:28 CDT)
- Re: trio program (Tue Sep 16 2003 - 10:17:13 CDT)
- Re: AtomLexer/lex.yy.c error (Tue Sep 16 2003 - 10:06:33 CDT)
- Re: trio program (Fri Sep 12 2003 - 11:00:17 CDT)
- Re: loading trj file (Fri Sep 12 2003 - 09:59:35 CDT)
Brian Corrie
- Run time error on Max Impact (Wed Apr 16 1997 - 01:16:40 CDT)
Brian Dotson
- Viewing an SDF file in VMD (Thu Jun 30 2005 - 07:54:31 CDT)
- Re: Using VMD with Chromium (Wed Mar 03 2004 - 07:22:01 CST)
- RE: Using VMD with Chromium (Tue Mar 02 2004 - 06:12:42 CST)
- Using VMD with Chromium (Mon Mar 01 2004 - 06:59:34 CST)
Brian Kidd
- creating videos where the representation changes throughout (Thu Feb 19 2009 - 23:30:20 CST)
- using the beta and occupancy columns as state variables (Tue Oct 28 2008 - 00:42:41 CDT)
- periodic box image in tcl script (Mon Sep 29 2008 - 11:27:39 CDT)
- vmd MacOSX using dispdev (Thu Jul 17 2008 - 18:08:03 CDT)
- Re: Mac OSX TK console issues (Fri Jun 15 2007 - 14:57:16 CDT)
- atomselection question (Tue May 22 2007 - 18:55:55 CDT)
- question about setting variables in a loop (Mon Jan 08 2007 - 22:01:12 CST)
- .vmdrc (Wed Jun 21 2006 - 18:26:48 CDT)
- color protein based on an event during a trajectory (Wed Jun 07 2006 - 21:33:39 CDT)
- Re: fedora core 5 and VMD 1.8.4 (Tue Apr 25 2006 - 23:02:17 CDT)
- Re: fedora core 5 and VMD 1.8.4 (Tue Apr 25 2006 - 20:06:50 CDT)
- fedora core 5 and VMD 1.8.4 (Tue Apr 25 2006 - 18:37:32 CDT)
- Calculate the area of overlap? (Sat May 21 2005 - 02:01:04 CDT)
- wrap ions (Wed Apr 27 2005 - 11:39:35 CDT)
- determining vdw, elec, and others (Wed Feb 16 2005 - 23:09:12 CST)
Brian Smith
- Contribution of selected atoms to surface (Fri May 04 2007 - 03:12:57 CDT)
- How do I set the color scale for beta? (Fri Sep 24 2004 - 01:43:31 CDT)
Brittany Morgan
- RE: script to resolve trajectory "jumps" on Desmond dynamic (Wed Mar 04 2009 - 11:21:13 CST)
- RE: rna topology and parameters for rna (Mon Oct 29 2007 - 08:20:16 CDT)
brmorgan_at_clarku.edu
- 'gopython' Tkinter and Numeric Python error (Mon Jan 28 2008 - 09:55:36 CST)
- Solvate package (Wed Sep 05 2007 - 13:02:03 CDT)
brosbam_at_berkeley.edu
- autopsf from console (Thu Jul 17 2008 - 12:23:21 CDT)
- purple bacteria and psfgen (Tue Jul 15 2008 - 12:37:30 CDT)
Bryce Vang
- Spring quality watches offer (Mon Apr 28 2008 - 12:56:22 CDT)
Buford Granger
- Inexpensive Louis Vuitton bags (Thu Apr 24 2008 - 09:03:05 CDT)
Buford Greene
- No prescr1ption? No problem! (Sat Aug 25 2007 - 09:27:00 CDT)
Burak Cankurtaran
- Re: Isosurface and Fieldlines Not rendered in colour (Tue May 26 2009 - 21:17:36 CDT)
- Isosurface and Fieldlines Not rendered in colour (Tue May 26 2009 - 00:15:44 CDT)
Burcin Temel
- Re: suggested video card for linux (Mon Aug 11 2008 - 12:13:06 CDT)
- suggested video card for linux (Mon Aug 04 2008 - 07:32:03 CDT)
by way of Jeroen Akershoek
- Weird lighting in CAVE (Wed Aug 25 2004 - 03:24:00 CDT)
bybaker_at_itsa.ucsf.edu
- TkCon History (Mon Sep 05 2005 - 03:20:56 CDT)
- Re: vmdtext & Window (Sat Sep 03 2005 - 22:06:14 CDT)
- vmdtext and .cshrc. (Fri Sep 02 2005 - 21:09:25 CDT)
- plugin problem (Tue Aug 30 2005 - 01:17:45 CDT)
- Install VMD on Window XP (Thu Oct 28 2004 - 22:19:46 CDT)
- Install VMD on Window XP (Thu Oct 28 2004 - 22:17:59 CDT)
C L Freeman
- Re: vmd maxAtom (Thu Feb 07 2008 - 04:53:30 CST)
- vmd maxAtom (Wed Feb 06 2008 - 10:10:30 CST)
Caio Julio Martins Veloso
- RES: uNABLE TO OPEN VMD ON WINDOWS 2K (Thu Feb 01 2007 - 06:54:03 CST)
- uNABLE TO OPEN VMD ON WINDOWS 2K (Wed Jan 31 2007 - 21:38:03 CST)
caldwell_at_heimdal.compchem.ucsf.edu
- Re: Amber prmtop/inpcrd files (Thu Jul 31 2003 - 14:22:12 CDT)
- Re: coloring waters (Fri Jun 20 2003 - 12:06:32 CDT)
- Re: coloring waters (Thu Jun 19 2003 - 18:25:04 CDT)
- coloring waters (Thu Jun 19 2003 - 12:51:05 CDT)
Cameron Mura
- resolved [Re: vmd / python / f10] (Sun May 17 2009 - 19:07:47 CDT)
- Re: vmd / python / f10 (Sat May 16 2009 - 22:00:29 CDT)
- vmd / python / f10 (Sat May 16 2009 - 18:43:18 CDT)
- FC4 stereo problems (Wed Jul 27 2005 - 18:03:58 CDT)
campen_at_geosc.psu.edu
- Reading Amber .crd files (Tue Jul 18 2006 - 12:25:17 CDT)
- Reading Amber .prd and PARM files into VMD (Tue Jul 18 2006 - 08:32:37 CDT)
carles ferrer
- truncated octahedron box in namd (Tue Aug 26 2003 - 17:58:28 CDT)
Carlos Simmerling
- info for computational chemistry awards, please forward (Fri Feb 20 2009 - 10:22:27 CST)
- problem rendering traj file with tachyon (Tue Sep 13 2005 - 10:47:03 CDT)
- Re: VMD crash on athlon64 with licorice representation (Wed May 11 2005 - 10:34:22 CDT)
- VMD crash on athlon64 with licorice representation (Wed May 11 2005 - 08:13:25 CDT)
carlos_at_avalon.umaryland.edu
- Fixing the View in a Movie (Fri Oct 12 2007 - 11:44:45 CDT)
Carmen Valladares
- NAMD tutorial for Windows problem reading pgn file from vmd tkconsole (Fri Aug 21 2009 - 16:26:04 CDT)
- Mutator: Losing Chromophore (Wed Aug 19 2009 - 19:14:57 CDT)
- Save State Fails (Tue Jul 21 2009 - 18:57:00 CDT)
Carolyn Phillips
- Re: using VMD 1.8.7 on a Mac (Mon Aug 24 2009 - 18:24:36 CDT)
- Re: using VMD 1.8.7 on a Mac (Mon Aug 24 2009 - 11:33:04 CDT)
- using VMD 1.8.7 on a Mac (Sun Aug 23 2009 - 15:13:40 CDT)
- problem with gopython (Mon Mar 10 2008 - 22:32:05 CDT)
Carson Cope
- Delightsome Cart1er w4tches at Prest1ge Repl1cas (Fri Aug 31 2007 - 13:58:34 CDT)
Carsten Olbrich
- Holo-Bench with VMD and Flystick2 and/or Phantom (Tue Nov 17 2009 - 12:03:56 CST)
- Re: Download the newest version of VMD (Mon Jan 19 2009 - 05:05:08 CST)
- Re: How to generate an index (.ind) file? (Fri Dec 05 2008 - 01:30:17 CST)
- Re: SpaceNavigator (Tue Dec 04 2007 - 01:21:46 CST)
- Re: SpaceNavigator (Mon Dec 03 2007 - 07:46:02 CST)
- Re: SpaceNavigator (Fri Nov 30 2007 - 10:58:32 CST)
- Re: SpaceNavigator (Fri Nov 30 2007 - 10:16:46 CST)
- SpaceNavigator (Thu Nov 29 2007 - 11:23:01 CST)
cashprofit3_at_address.com
- Real Cash, Real Profit....Believe it !!! (Tue Mar 21 2000 - 00:09:55 CST)
Caterina Bernini
- pKa and Temperature in MD (Tue Mar 31 2009 - 14:47:39 CDT)
caterinabernini_at_unisi.it
- eliminate atoms from psf and pdb files (Tue Jan 06 2009 - 11:40:15 CST)
Catherine Tweedie
- polymer molecule orientation parameter (Mon Sep 10 2007 - 13:45:11 CDT)
cbala_at_igib.res.in
- a suggestion and query on command usage (Fri Jul 01 2005 - 08:08:57 CDT)
- loading amber file (Tue May 31 2005 - 01:05:45 CDT)
Cesar Avila
- Periodic image and transformation matrix (Mon Jul 21 2008 - 19:20:06 CDT)
- Re: How to visualize phi maps calculated with delphi V. 4 (Sat Apr 21 2007 - 20:05:42 CDT)
- Re: Shutter glasses on VMD (Sun Nov 26 2006 - 16:28:10 CST)
- Shutter glasses on VMD (Sat Nov 25 2006 - 12:14:00 CST)
Cesar Delgado
- vmd-1.8.2, Spaceball and FC2 (Mon Jun 07 2004 - 13:54:36 CDT)
- Re: Using VMD with Chromium (Tue Mar 02 2004 - 19:26:22 CST)
- Re: VMD and Chromium (Thu Oct 30 2003 - 15:17:22 CST)
- Re: VMD and Chromium (Thu Oct 30 2003 - 13:37:15 CST)
- Re: VMD and Chromium (Thu Oct 30 2003 - 12:03:45 CST)
- VMD and Chromium (Wed Oct 22 2003 - 18:13:57 CDT)
- Tachyon VMD and MPI (Mon Dec 09 2002 - 18:25:19 CST)
- Re: Chromium (Mon Aug 05 2002 - 16:19:09 CDT)
- Re: Chromium (Thu Aug 01 2002 - 16:21:54 CDT)
- Re: Chromium (Thu Aug 01 2002 - 16:07:40 CDT)
- Chromium (Thu Aug 01 2002 - 15:16:31 CDT)
- More Linux woes (Fri Jul 26 2002 - 16:08:10 CDT)
- Linux compile error (Fri Jul 26 2002 - 15:47:34 CDT)
Cesar Luis Avila
- Re: Data fields in vmd (Thu Jan 15 2009 - 13:27:14 CST)
- Re: Data fields in vmd (Thu Jan 15 2009 - 12:33:09 CST)
- Data fields in vmd (Wed Jan 14 2009 - 15:02:25 CST)
- Calculating acyl chain order parameter profile on phospholipid vesicles (Thu Jan 08 2009 - 15:43:55 CST)
- Re: doubling a membrane (Tue Nov 11 2008 - 18:44:07 CST)
- Re: doubling a membrane (Tue Nov 11 2008 - 13:23:33 CST)
- Re: Problems with Newcartoon representation (Wed Aug 06 2008 - 14:28:00 CDT)
- Problems with Newcartoon representation (Wed Aug 06 2008 - 11:17:58 CDT)
- Extracting IR spectra from trajectories (Fri Oct 19 2007 - 10:08:45 CDT)
- Averaging volmaps (Thu Sep 06 2007 - 10:11:36 CDT)
- PMEpot + bigDCD ? (Wed Sep 05 2007 - 15:08:00 CDT)
- Re: How to load packages from tcllib into VMD (Mon Aug 20 2007 - 17:22:53 CDT)
- How to load packages from tcllib into VMD (Mon Aug 20 2007 - 14:59:49 CDT)
- Re: NAMD energy plugin (Wed Aug 15 2007 - 11:58:41 CDT)
- Re: NAMD energy plugin (Wed Aug 15 2007 - 11:15:17 CDT)
- NAMD energy plugin (Wed Aug 15 2007 - 08:22:59 CDT)
- Calculating volumetric data for a molecule (Tue Jul 24 2007 - 17:30:43 CDT)
- Setting modstyle volumeslice options via tk console (Wed Jul 18 2007 - 15:16:20 CDT)
- Rotate dx map (Thu Jun 21 2007 - 10:03:50 CDT)
- Re: PME plugin (Tue Jun 12 2007 - 11:22:26 CDT)
- PME plugin (Tue Jun 12 2007 - 11:18:47 CDT)
- Re: lipid Scd order parameter for a large bilayer (1440 lipids) with a changing bilayer normal (ie. bilayer undulations) (Wed Jun 06 2007 - 10:55:19 CDT)
- Re: list in TCL (Mon Jun 04 2007 - 20:07:33 CDT)
- Using regular expressions on tcl atomselection (Thu May 31 2007 - 17:45:32 CDT)
- Electron density profile (Thu May 31 2007 - 11:30:29 CDT)
- Re: lipid Scd order parameter for a large bilayer (1440 lipids) with a changing bilayer normal (ie. bilayer undulations) (Wed May 30 2007 - 20:36:09 CDT)
- Re: selecting complete residues within perticular distance. (Mon May 28 2007 - 14:04:32 CDT)
- Re: How to use remote GLSL rendering capabilities? (Sun May 27 2007 - 16:05:03 CDT)
- Re: selecting complete residues within perticular distance. (Sun May 27 2007 - 16:06:29 CDT)
- How to use remote GLSL rendering capabilities? (Thu May 24 2007 - 18:02:43 CDT)
- Adjusting perspective (Thu May 24 2007 - 11:33:40 CDT)
- How to visualize phi maps calculated with delphi V. 4 (Fri Apr 20 2007 - 18:36:48 CDT)
- Re: vmd can't start up after being installed in linux (Wed Apr 18 2007 - 13:23:21 CDT)
- Re: vmd can't start up after being installed in linux (Wed Apr 18 2007 - 10:54:40 CDT)
- Re: Strange characters using writemol2 (vmd 1.8.5) (Mon Apr 16 2007 - 20:06:58 CDT)
- Strange characters using writemol2 (vmd 1.8.5) (Mon Apr 16 2007 - 18:32:28 CDT)
- Re: Updating atomselection from frame to frame (Fri Mar 02 2007 - 08:59:48 CST)
- Re: Updating atomselection from frame to frame (Fri Mar 02 2007 - 07:32:01 CST)
- Re: superimposing two structures and getting the coordinates (Tue Feb 20 2007 - 14:52:36 CST)
- Re: superimposing two structures and getting the coordinates (Tue Feb 20 2007 - 12:43:52 CST)
- Measure atoms volume on VMD (Thu Feb 15 2007 - 15:27:53 CST)
- Re: Saving work in VMD--this seems ridiculously difficult! (Thu Feb 08 2007 - 20:53:30 CST)
- Re: Saving mutli-molecule structures in VMD (e.g., for building membranes) (Mon Feb 05 2007 - 09:11:38 CST)
- Re: Removing water in tcl (Thu Jan 04 2007 - 16:13:49 CST)
- Removing water in tcl (Thu Jan 04 2007 - 10:23:15 CST)
- Re: Writing pdb without chain identifier (Wed Dec 27 2006 - 12:54:25 CST)
- Re: Writing pdb without chain identifier (Tue Dec 26 2006 - 17:16:51 CST)
- Writing pdb without chain identifier (Tue Dec 26 2006 - 14:49:45 CST)
- Re: PME units (Tue Oct 03 2006 - 15:05:17 CDT)
- Re: namd-l: Re: Angles and dihedral generation (Tue Sep 05 2006 - 08:15:18 CDT)
- Re: namd-l: Re: Angles and dihedral generation (Mon Sep 04 2006 - 10:00:35 CDT)
- Angles and dihedral generation (Fri Sep 01 2006 - 20:02:36 CDT)
- Re: Where did I put those angles? (Thu Aug 31 2006 - 19:17:14 CDT)
- Where did I put those angles? (Thu Aug 31 2006 - 17:16:01 CDT)
Cesar Millan
- Possible bug in vmd 1.8.7 alpha? (Sat Apr 18 2009 - 00:09:57 CDT)
- Potential map animation, help! (Tue Nov 20 2007 - 12:40:59 CST)
- Re: use animatepdbs.tcl to include APBS potential maps (Sun Jun 10 2007 - 22:09:27 CDT)
- use animatepdbs.tcl to include APBS potential maps (Sat Jun 09 2007 - 22:48:02 CDT)
- Re: save coordinates after moving them. (Wed Oct 04 2006 - 15:35:33 CDT)
- Re: save coordinates after moving them. (Tue Oct 03 2006 - 15:32:17 CDT)
- save coordinates after moving them. (Tue Oct 03 2006 - 14:02:41 CDT)
- How to build a pseudo pore? (Sat Sep 30 2006 - 11:36:15 CDT)
- proto-HEME parameters (Thu Apr 06 2006 - 17:05:56 CDT)
Cetin Baloglu
- Re: bad resolution and too slow on mandrake 10.0 (Wed May 25 2005 - 04:04:55 CDT)
- Hydration (Wed May 18 2005 - 03:44:34 CDT)
- radius of gyration (Tue May 10 2005 - 09:47:59 CDT)
cgji
- Vmd too slow on Suse10.x (Mon May 05 2008 - 08:20:47 CDT)
Ch. Fufezan
- Re: change default drawing and coloring method (Tue May 23 2006 - 09:26:52 CDT)
Chaitanya Krishna
- Message from Chaitanya Krishna (Fri Jan 27 2006 - 08:17:50 CST)
Chaitanya Krishna A
- Building a sphere of atoms around a chosen atom (Mon Jan 02 2006 - 08:01:49 CST)
- mpg image speed (Tue Apr 12 2005 - 09:06:44 CDT)
- Re: mpg image speed (Mon Apr 11 2005 - 14:19:11 CDT)
- Re: mpg image speed (Mon Apr 11 2005 - 12:02:09 CDT)
- mpg image speed (Sun Apr 10 2005 - 01:01:08 CDT)
- mpg image speed (Sun Apr 10 2005 - 00:04:34 CDT)
- mpg image speed (Thu Apr 07 2005 - 04:08:54 CDT)
Chanda.Jnanojjal_at_edam.uhp-nancy.fr
- replication of bilayer (Wed Dec 26 2007 - 04:08:00 CST)
Chandra Ramananjara
- Re: NAMDENERGY crashing repeatedly (Tue Aug 05 2008 - 18:49:40 CDT)
- NAMDENERGY crashing repeatedly (Tue Aug 05 2008 - 09:27:12 CDT)
- Inconsistencies in NAMD simulations (Tue Jan 22 2008 - 02:49:53 CST)
- namdenergy plugin (Sun Jul 09 2006 - 23:47:10 CDT)
- Re: error using Namdenergy (Wed Jun 21 2006 - 19:55:01 CDT)
- Re: error using Namdenergy (Wed Jun 21 2006 - 21:17:13 CDT)
- error using Namdenergy (Wed Jun 21 2006 - 15:04:19 CDT)
- NAMD support for MNDO semi-empirical model (Mon May 15 2006 - 10:34:07 CDT)
- Tcl scripting within NAMD configuration file (Fri Mar 24 2006 - 09:26:18 CST)
- TCL scripting within NAMD Configuration File (Thu Mar 23 2006 - 09:12:56 CST)
- Re: Problem with VMD 'animate' command (Mon Feb 13 2006 - 01:37:31 CST)
- Problem with VMD 'animate' command (Sun Feb 12 2006 - 10:12:36 CST)
chandran karunakaran
- Add H-atoms to Pdb file for NMR (Tue Apr 20 2004 - 11:22:32 CDT)
- Metal-Metal distance (Tue Apr 08 2003 - 17:26:13 CDT)
- Solvate 1.1.1 (Tue Mar 25 2003 - 13:05:23 CST)
- Distance, angle (Sat Mar 22 2003 - 15:09:10 CST)
- (no subject) (Thu Mar 20 2003 - 13:56:44 CST)
- (no subject) (Thu Mar 20 2003 - 13:55:13 CST)
Chang Hu
- NAMD from command line args (Sat May 06 2006 - 21:09:53 CDT)
- Re: Re: Refreshing the screen (Thu May 04 2006 - 14:12:16 CDT)
- Re: Re: Refreshing the screen (Thu May 04 2006 - 13:24:47 CDT)
- Refreshing the screen (Thu May 04 2006 - 11:58:12 CDT)
- Re: Building VMD in Windows (Sun Apr 30 2006 - 22:42:34 CDT)
- Re: Building VMD in Windows (Sun Apr 30 2006 - 01:07:52 CDT)
- Re: Problems with mouse programming in VMD (Sun Apr 30 2006 - 01:03:07 CDT)
- Building VMD in Windows (Sat Apr 29 2006 - 22:12:23 CDT)
- Re: Problems with mouse programming in VMD (Sat Apr 29 2006 - 21:05:37 CDT)
- Re: Problems with mouse programming in VMD (Thu Apr 27 2006 - 12:36:23 CDT)
- Problems with mouse programming in VMD (Wed Apr 26 2006 - 23:19:57 CDT)
Chang, Christopher
- Re: namd-l: solvate a molecule (Tue Sep 23 2008 - 11:57:58 CDT)
- Re: solvate a molecule (Tue Sep 23 2008 - 11:47:37 CDT)
- Measure hbonds equivalent in Python interface? (Wed Sep 10 2008 - 18:52:43 CDT)
- Re: Py_atomsel.C: invalid conversion (Tue Sep 02 2008 - 13:59:12 CDT)
- Py_atomsel.C: invalid conversion (Fri Aug 29 2008 - 13:01:04 CDT)
- RE: VMD 1.8.5 startup (Thu Nov 09 2006 - 14:20:16 CST)
- VMD 1.8.5 startup (Wed Nov 08 2006 - 14:56:37 CST)
- RE: Atomselection for negative values (Wed Jul 19 2006 - 17:46:15 CDT)
- Atomselection for negative values (Wed Jul 19 2006 - 16:18:39 CDT)
- RE: Appending to DCD file with "animate write" (Wed Nov 16 2005 - 17:05:41 CST)
- RE: Appending to DCD file with "animate write" (Wed Nov 16 2005 - 13:42:36 CST)
- Appending to DCD file with "animate write" (Wed Nov 16 2005 - 13:11:30 CST)
- RE: problem with writepdb (Mon Oct 24 2005 - 11:15:22 CDT)
- RE: Loading multiple molecules in one step / "Apply changes automatically" (Fri Oct 21 2005 - 11:15:40 CDT)
- RE: Warning: add bond failed in patch ACE (Thu Oct 20 2005 - 11:41:43 CDT)
- RE: dots per inch? (Wed Oct 19 2005 - 15:26:46 CDT)
- RE: puzzling writepdb error (Wed Oct 12 2005 - 17:58:33 CDT)
- RE: VMD removing slightly misplaced atoms (Tue Oct 04 2005 - 20:05:48 CDT)
- RE: visualizing an atomselect (Wed Sep 28 2005 - 18:38:29 CDT)
- RE: tcl command to save structure to file? (Wed Sep 28 2005 - 18:30:16 CDT)
- COR format and first residue (Tue Sep 27 2005 - 18:31:32 CDT)
- RE: Left Right eye stereo flip in Crystal Eyes (Wed Sep 14 2005 - 15:18:37 CDT)
- RE: DCD file format (Wed Sep 14 2005 - 14:27:47 CDT)
- RE: problem rendering traj file with tachyon (Tue Sep 13 2005 - 16:19:22 CDT)
- RE: dcd tools (Tue Sep 13 2005 - 10:20:35 CDT)
- RE: Read support for CHARMM binary coordinate file? (Thu Aug 25 2005 - 17:59:55 CDT)
- Read support for CHARMM binary coordinate file? (Tue Aug 23 2005 - 17:28:31 CDT)
- RE: help with BIOMT (Fri Aug 12 2005 - 14:57:51 CDT)
- RE: vmd with no x (Thu Aug 11 2005 - 18:00:33 CDT)
- RE: Atom renumbering in DCD file (Tue Aug 09 2005 - 14:15:03 CDT)
- Atom renumbering in DCD file (Mon Aug 08 2005 - 18:48:33 CDT)
- Changing atom order in DCD structures? (Mon Jul 25 2005 - 15:42:45 CDT)
- RE: Representing disulfide bonds when using psfgen (Thu Jul 21 2005 - 12:39:06 CDT)
- RE: (Mon Jul 18 2005 - 16:32:09 CDT)
- TCL for adding bonds? (Thu Jul 07 2005 - 11:30:21 CDT)
- RE: psfgen and DNA (Thu Jul 07 2005 - 10:54:42 CDT)
- Strange VMD output (Fri Jun 17 2005 - 15:02:57 CDT)
- RE: Combine Drawing Methods - Cartoon and Disulfide Bonds (Tue Jun 14 2005 - 18:43:48 CDT)
- RE: Problems with Psf using Charmm format, solvate and autoionize (Wed Jun 08 2005 - 15:12:41 CDT)
- RE: creating scripts (Fri Jun 03 2005 - 17:50:51 CDT)
- Total charge query? (Fri May 13 2005 - 13:32:20 CDT)
- RE: representation_problem (Wed Apr 20 2005 - 16:34:14 CDT)
- RE: mpg image speed (Mon Apr 11 2005 - 11:20:24 CDT)
- RE: How to remove "Lable" (Thu Apr 07 2005 - 17:39:55 CDT)
- RE: Display only side chains (Mon Mar 07 2005 - 17:40:24 CST)
- RE: vmdmovie plugin (Fri Feb 18 2005 - 15:21:59 CST)
- RE: window size (Thu Feb 10 2005 - 17:07:31 CST)
- RE: installation of VIDEOMACH, how to point to the location of the files (Fri Feb 04 2005 - 13:49:17 CST)
- Selected angles during build? (Thu Feb 03 2005 - 15:38:04 CST)
- Possible values for "select_method"? (Mon Jan 10 2005 - 16:48:27 CST)
Changbong Hyeon
- Text-line command for Graphics? (Fri Apr 25 2003 - 16:00:40 CDT)
- DCD file format? (Fri Apr 25 2003 - 15:50:23 CDT)
Chari, Ravi
- APBS dx colors depend on order of molec files loaded??? (Thu Oct 18 2007 - 14:52:48 CDT)
Charles Cleveland
- Re: Problem with periodic condition (Sat Apr 28 2007 - 16:02:55 CDT)
- 1.8.6 install for Windows OpenGL (Microsoft Windows 2000/XP/Vista (32-bit) using OpenGL) (Sun Apr 08 2007 - 08:05:00 CDT)
Charles Danko
- Re: namd-l: How to make a disulphide bond (Tue May 16 2006 - 13:47:37 CDT)
Charles McCallum
- Re: drawing of direction vectors for conformational transition (Thu Sep 14 2006 - 10:42:06 CDT)
- Re: psfgen problems? (Tue Aug 22 2006 - 12:41:51 CDT)
- Re: reading cmap wih vmd (Fri Aug 18 2006 - 10:23:57 CDT)
- Re: water box... (Sat Jun 24 2006 - 18:24:16 CDT)
- Re: removing waters (gramicidin example) (Thu Oct 27 2005 - 15:26:01 CDT)
- Re: removing waters (gramicidin example) (Thu Oct 27 2005 - 15:46:22 CDT)
- removing waters (gramicidin example) (Thu Oct 27 2005 - 12:57:46 CDT)
- Re: trouble with autopsf (Tue Oct 25 2005 - 08:19:38 CDT)
- Re: RMSD of dihedrals (Fri Sep 30 2005 - 09:14:55 CDT)
- RMSD of dihedrals (Thu Sep 29 2005 - 15:58:07 CDT)
- Re: Ramachandran plot (Tue May 10 2005 - 22:56:14 CDT)
- Re: VMD does not start on Mac OS 10.3.8 (Fri Mar 18 2005 - 17:07:22 CST)
- Re: (Wed Nov 17 2004 - 22:21:11 CST)
- Re: psfgen and xplor topology (Tue Oct 26 2004 - 11:36:37 CDT)
- Re: psfgen and xplor topology (Tue Oct 26 2004 - 09:50:08 CDT)
- Re: psfgen and xplor topology (Mon Oct 25 2004 - 22:33:48 CDT)
- Re: VMD 1.8.1 MacOSX running very slow on new G4 1 GHz Powerbook (Thu Oct 23 2003 - 13:12:39 CDT)
- mousing problem under OS X (Fri Oct 17 2003 - 23:25:46 CDT)
- re-centering view/rotation axes (Mon Aug 11 2003 - 17:03:37 CDT)
- configuring vmd w/ browser on OS X (Fri Aug 08 2003 - 21:49:16 CDT)
- Re: movie making (Tue Aug 05 2003 - 16:05:53 CDT)
- Re: solute + solvent temperature? (Fri May 16 2003 - 01:04:12 CDT)
- vmdmovie on OS X current (Fri May 09 2003 - 02:22:23 CDT)
Charles Moad
- applying 6dof input forces (Tue Jul 05 2005 - 16:13:02 CDT)
- creating psf with trimethoprim (Wed May 11 2005 - 21:38:14 CDT)
- IMDEnergies from python (Mon May 09 2005 - 22:51:43 CDT)
- Re: Converting graphics to a pdb's coord system (Thu Apr 14 2005 - 20:08:24 CDT)
- Re: Converting graphics to a pdb's coord system (Wed Apr 13 2005 - 18:40:54 CDT)
- Converting graphics to a pdb's coord system (Tue Apr 12 2005 - 08:52:12 CDT)
- Re: mpg image speed (Mon Apr 11 2005 - 14:23:08 CDT)
- Converting graphics to a pdb's coord system (Sun Apr 10 2005 - 19:13:31 CDT)
Charles Schwieters
- Re: No Display when running vmd 1.3 (Thu May 27 1999 - 16:03:58 CDT)
- translations with fixed and unfixed molecules (Mon Apr 12 1999 - 16:27:28 CDT)
- moving molecules and getting the new positions (Tue Mar 30 1999 - 15:57:19 CST)
Charles.Schwieters_at_nih.gov
- Re: Molecule rotation (Thu Mar 08 2001 - 12:54:04 CST)
Charles_at_Schwieters.org
- Re: vmd-xplor installation (Thu Dec 14 2006 - 18:56:28 CST)
- Re: understanding NOE restraints (Tue May 03 2005 - 05:52:56 CDT)
- Re: Calling Python hackers.... (Tue Feb 08 2005 - 11:11:21 CST)
- Re: core when using some features of vmd-xplor (Thu May 06 2004 - 16:03:01 CDT)
- Re: few colors in new ribbons representation - raytrace output (Thu Jan 29 2004 - 21:31:23 CST)
- few colors in new ribbons representation - raytrace output (Thu Jan 29 2004 - 17:40:15 CST)
- stereo postscript rendering (Tue Jun 20 2000 - 08:04:27 CDT)
- script for generating stereo postscript images (Fri Feb 11 2000 - 14:53:32 CST)
Charlotte J Siska
- trouble saving the state of two proteins (Fri Jun 29 2007 - 12:45:27 CDT)
CHAUMONT Alain
- Changing the rotation and centering matrix of a molecule (Wed Oct 13 2004 - 10:39:48 CDT)
- Centering of the view on one atom (Wed Mar 31 2004 - 09:42:09 CST)
- Spatial Distributionb Functions (Thu Feb 05 2004 - 03:01:46 CST)
Chen Chen
- Re: use configure.options (Mon Nov 17 2008 - 21:37:24 CST)
- Re: use configure.options (Mon Nov 17 2008 - 20:53:14 CST)
- use configure.options (Mon Nov 17 2008 - 19:34:24 CST)
Chen Fei
- Compute force between two atoms (Tue Feb 26 2008 - 20:28:22 CST)
Chen Yongzhi
- How to save trajectory using Tcl commands? (Wed Apr 14 2004 - 19:28:11 CDT)
ChenFei
- ´ð¸´: classify and compute the forces between two atoms (Tue Feb 26 2008 - 01:10:29 CST)
- classify and compute the forces between two atoms (Mon Feb 25 2008 - 06:38:58 CST)
- How can I get .xyzr file or .xyzrn file? (Wed Sep 26 2007 - 02:27:51 CDT)
Cheng Luo, Ph.D.
- question about "then: then/endif not found" in the start VMD. (Fri Dec 16 2005 - 11:52:18 CST)
Cheng, Kelvin
- Error in running VMD on AMD64-bit machine (Fedora Core 4) (Mon Dec 19 2005 - 16:36:55 CST)
chenmengen
- NOC 3.0 is released (Wed May 16 2007 - 14:01:37 CDT)
- NOC (current version 1.5.2.10) a new, free program for protein structure model-building, visualization, validation and analysis (Tue Mar 29 2005 - 19:07:52 CST)
Cheol Soon Lee
- Segmentation error! (Wed Apr 09 1997 - 05:47:56 CDT)
- Segmentation error! (Wed Apr 09 1997 - 05:46:34 CDT)
cheol_at_rccd.snu.ac.kr
- Error in Linux (Wed Apr 09 1997 - 05:51:13 CDT)
Cheri M Turman
- Re: error while loading shared libraries: libGLU.so.1 (Tue Oct 26 2004 - 15:12:07 CDT)
- Re: error while loading shared libraries: libGLU.so.1 (Tue Oct 26 2004 - 13:37:56 CDT)
- Re: error while loading shared libraries: libGLU.so.1 (Tue Oct 26 2004 - 12:21:29 CDT)
- Re: error while loading shared libraries: libGLU.so.1 (Thu Oct 21 2004 - 14:27:46 CDT)
- error while loading shared libraries: libGLU.so.1 (Thu Oct 21 2004 - 13:24:12 CDT)
- Re: startup failure (Mon Apr 05 2004 - 12:47:54 CDT)
- startup failure (Fri Apr 02 2004 - 15:29:00 CST)
- startup errors and variations of installation (Thu Apr 01 2004 - 14:43:58 CST)
- startup failure (Thu Apr 01 2004 - 14:24:14 CST)
Chetan Mahajan
- RE: Re: [lammps-users] LAMMPS to VMD: lmp2vmd tool (Wed Jun 10 2009 - 10:00:30 CDT)
- RE: Re: [lammps-users] LAMMPS to VMD: lmp2vmd tool (Tue Jun 09 2009 - 13:08:16 CDT)
ChoiHeeSung
- vmd bug in ubuntu 9.10 (Wed Nov 11 2009 - 10:53:04 CST)
Chris Berthiaume
- Re: segfault using VMD 1.8.6 32-bit Linux and chromium 1.9 (Tue Aug 26 2008 - 12:23:11 CDT)
- segfault using VMD 1.8.6 32-bit Linux and chromium 1.9 (Mon Aug 25 2008 - 20:50:12 CDT)
Chris Upton
- Re: [Tech] Colors in VMD (Fri Jan 24 1997 - 11:55:13 CST)
- JMV (Wed Mar 31 2004 - 13:30:08 CST)
- MacOSX bundle (Sat Jul 06 2002 - 00:16:13 CDT)
- Mac OSX version (Tue Jun 25 2002 - 12:18:47 CDT)
chris.harwell_at_pharma.novartis.com
- VMD on Linux RH9 with ATI's fglrx-4.3.0-3.14.6 1280x1024@100Hz dumping core ... any helpful advice :>? (Fri Dec 17 2004 - 15:27:21 CST)
- any body else have VMD problems with Linux + ATI FireGL X1-256p + fglrx-glc22-4.3.0-3.7.0 (Wed Feb 11 2004 - 16:16:46 CST)
Christer Svanberg
- VMD using CygWin? (Tue Dec 19 2006 - 07:29:15 CST)
Christian Courtney
- Replica watch is a perfect gift (Sun Apr 27 2008 - 04:18:34 CDT)
Christian Fufezan
- Re: Starting VMD at Command Line in OSX (Sat Oct 28 2006 - 13:38:10 CDT)
- pass variables from the shell to VMD (Thu Sep 07 2006 - 10:54:05 CDT)
- change default drawing and coloring method (Mon May 22 2006 - 19:08:17 CDT)
Christian Simon
- Re: Problem with Hg, H (Wed May 10 2006 - 07:40:49 CDT)
- Re: Difficulties using Crystal Eyes 3 (Mon Dec 06 2004 - 10:20:59 CST)
- Difficulties using Crystal Eyes 3 (Thu Dec 02 2004 - 09:00:05 CST)
- "Pick item mode" inactive in OSX bundle ? (Thu Oct 03 2002 - 07:44:53 CDT)
- Re: VMD 1.8 alpha 16, publically available ... (Mon Jun 24 2002 - 13:43:23 CDT)
- No 'Primary File Type' in Load menu (v1.8a10 on MacOSX) (Thu Jun 20 2002 - 08:01:20 CDT)
- Re: Re: Mac Titanium video card (Mon Jun 10 2002 - 07:45:42 CDT)
- Mac Titanium video card (Wed Jun 05 2002 - 17:06:20 CDT)
- Re: Help on script (Mon Mar 25 2002 - 08:06:27 CST)
Christian Wohlschlager
- Changing Nvidia driver (Tue Nov 17 2009 - 02:46:23 CST)
- Question about Keyboaerd events send from other PC (Thu Nov 05 2009 - 02:29:36 CST)
- Antw: Re: Cuda an a cluster ? (Fri Oct 23 2009 - 00:20:59 CDT)
- Cuda an a cluster ? (Thu Oct 22 2009 - 02:56:18 CDT)
- VMD Tracking VRPN (Wed Aug 19 2009 - 02:01:49 CDT)
- Antw: Re: CUDA Support (Tue Aug 18 2009 - 01:06:27 CDT)
- CUDA Support (Wed Aug 12 2009 - 03:09:35 CDT)
- NEW New (Thu Aug 06 2009 - 07:44:37 CDT)
- vmd Linux 64 (Fri Jul 31 2009 - 03:29:04 CDT)
- Re: Antw: Re: CAVE & Vmd (Fri Jul 27 2007 - 01:45:45 CDT)
- Antw: Re: CAVE & Vmd (Wed Jul 25 2007 - 08:21:27 CDT)
- CAVE & Vmd (Fri Jul 06 2007 - 02:06:54 CDT)
- Cave and usr keys defined in tcl (Tue Feb 27 2007 - 05:46:38 CST)
- Large Molecule in CAVE Enviroment (Thu Jan 18 2007 - 01:35:06 CST)
- Unaligned access to ... (Mon Jan 08 2007 - 02:57:56 CST)
- CAVE Sensor Question (Mon Dec 18 2006 - 01:28:53 CST)
- Thank you for you answere the folowing is the .vmdsensor file (Tue Dec 12 2006 - 06:06:52 CST)
- CAVE Question (Mon Dec 11 2006 - 00:28:12 CST)
- Re: Antw: Re: CAve Question (Thu Nov 30 2006 - 08:22:46 CST)
- Help for the CAVE (Wed Nov 29 2006 - 08:19:11 CST)
- Antw: Re: CAve Question (Tue Nov 28 2006 - 08:16:48 CST)
- CAve Question (Mon Nov 27 2006 - 02:39:04 CST)
Christina Payne
- solvate numbering problems (Wed Apr 06 2005 - 11:05:39 CDT)
Christine Horejs
- xzy format and ResType (Tue Nov 17 2009 - 14:03:01 CST)
- RBCG bead diameter (Wed Oct 28 2009 - 11:54:50 CDT)
- Re: lammpstrj file as pdb (Tue Oct 27 2009 - 12:18:15 CDT)
- lammpstrj file as pdb (Tue Oct 27 2009 - 11:50:06 CDT)
- colour residues (Mon Oct 12 2009 - 17:58:31 CDT)
- format of pdb file (Mon Oct 12 2009 - 09:04:51 CDT)
Christoph Hagedorn
- Q: MO visualisation (Thu Dec 14 2000 - 11:35:39 CST)
Christoph Schneider
- calculation of RMS values (Wed Aug 19 1998 - 04:05:51 CDT)
- measuring torsion angles (Mon Jun 29 1998 - 03:08:48 CDT)
- H-bonds (Mon Oct 06 1997 - 12:02:13 CDT)
- rock around the clock? (Mon Oct 06 1997 - 11:02:46 CDT)
Christoph Weber
- Re: VMD on MacOSX 10.6 Snow Leopard: fast (Tue Sep 01 2009 - 13:30:07 CDT)
- VMD on MacOSX 10.6 Snow Leopard: fast (Mon Aug 31 2009 - 18:31:11 CDT)
- NVidia GeForce 3D Vision (Tue May 19 2009 - 12:38:08 CDT)
- Improved VMD performance on MacOSX 10.5.2 (Tue Feb 12 2008 - 16:51:14 CST)
- Re: VMD 1.8.6, XTC format on Mac OS X 10.5.1 (Sat Jan 26 2008 - 16:59:17 CST)
- Re: no transparency on newest iMacs (Thu Oct 04 2007 - 15:56:56 CDT)
- no transparency on newest iMacs (Wed Oct 03 2007 - 19:05:21 CDT)
- VMD performance on Vista (Thu Feb 01 2007 - 16:23:58 CST)
- Re: VMD email support next two weeks (Mon Dec 18 2006 - 18:10:13 CST)
- Re: RE: vmd-l digest V1 #579 (Thu Jul 20 2006 - 17:19:08 CDT)
- Re: Anyone using ATI X1600? (Mon Jul 17 2006 - 16:18:00 CDT)
- revised VMD tutorial (Fri Jul 14 2006 - 19:03:44 CDT)
- Re: Anyone using ATI X1600? (Fri Jul 14 2006 - 18:35:35 CDT)
- Re: MacBookPro and VMD version (Wed Apr 05 2006 - 14:10:08 CDT)
Christophe Guilbert
- avoiding distance based bond search when reading a PDB file (Thu Nov 14 2002 - 14:31:17 CST)
christopher
- morph (Wed Feb 28 2007 - 16:18:48 CST)
- Re: VMD open GL Display problem (Tue Feb 27 2007 - 10:52:51 CST)
- GL window offset problem (Mon Feb 12 2007 - 15:09:55 CST)
- cartoon problems (encore) (Sat Feb 03 2007 - 15:29:56 CST)
- Re: [vmd] K3b bug? (Sat Jan 27 2007 - 09:15:58 CST)
- [vmd] K3b bug? (Sat Jan 27 2007 - 07:12:57 CST)
- Install and Configure Problems (Wed Jan 03 2007 - 08:57:14 CST)
- coloring residues with VMD (Wed Nov 29 2006 - 14:41:37 CST)
Christopher D. Wassman
- Re: Problems loading shared object, vmd1.8 linux mesa binaries (Tue Feb 25 2003 - 01:49:09 CST)
- Problems loading shared object, vmd1.8 linux mesa binaries (Sun Feb 23 2003 - 21:59:24 CST)
Christopher Gillespie
- Re: Understanding topology files? (Thu Jan 15 2009 - 10:27:52 CST)
- Re: Understanding topology files? (Thu Jan 15 2009 - 09:25:23 CST)
- Re: Catdcd? (Thu Oct 16 2008 - 12:25:42 CDT)
- Re: Selecting atoms that have real SASA greater than 0, Not using "Surface" (Tue Jul 29 2008 - 18:39:14 CDT)
- Re: water box...density!!! (Mon Jul 28 2008 - 09:43:47 CDT)
- Re: solvation and box size (Mon Jul 28 2008 - 07:33:37 CDT)
- Selecting atoms that have real SASA greater than 0, Not using "Surface" (Sun Jul 20 2008 - 16:28:04 CDT)
- Re: trajectory to xyz file. (Mon Jul 07 2008 - 14:44:12 CDT)
- Measure gofr with large DCD files (Possibly use bigdcd ???) (Fri May 23 2008 - 18:43:22 CDT)
Christopher Hartshorn
- Script problem (Thu Mar 12 2009 - 03:40:50 CDT)
- Membrane builder ?'s (Mon Feb 23 2009 - 13:09:16 CST)
- Average position of atom set (Tue Nov 04 2008 - 09:59:56 CST)
- Catdcd? (Thu Oct 16 2008 - 11:37:15 CDT)
- Solid Support Problem (Thu Sep 18 2008 - 13:33:07 CDT)
Christopher MacDermaid
- Re: superimposing proteins with non-similar coordinates (Wed Aug 26 2009 - 17:17:34 CDT)
Christopher Share
- Running VMD on Mac OS X (Mon Dec 01 2008 - 23:23:08 CST)
Christopher Stiles
- RE: different numbers of frames even though... (Fri Mar 14 2008 - 10:59:50 CDT)
- different numbers of frames even though... (Fri Mar 14 2008 - 01:49:53 CDT)
- radial density over one frame (Sun Mar 09 2008 - 14:55:51 CDT)
- RE: OpenGL Display (Wed Nov 14 2007 - 07:14:17 CST)
- OpenGL Display (Tue Nov 13 2007 - 23:33:32 CST)
- radial density (Thu Aug 09 2007 - 09:11:55 CDT)
- RE: CNT Analysis (Tue Aug 07 2007 - 10:12:13 CDT)
- CNT Analysis (Tue Aug 07 2007 - 08:41:31 CDT)
Chuck
- Problem: I got a runtime error "CthCreate failed to create fiber!". (Sun Jul 12 2009 - 03:49:44 CDT)
- FATAL ERROR: ABNORMAL EOF FOUND - buffer=*0 0* (Mon Feb 23 2009 - 15:52:05 CST)
chucruz_at_ks.uiuc.edu
- full version OEM soft (Thu Oct 29 2009 - 23:14:25 CDT)
- Downloadable version (Thu Oct 29 2009 - 02:51:04 CDT)
Chung, Dong Hoon
- Where should I put script file? (Fri Nov 12 2004 - 14:02:09 CST)
Chunhu Tan
- How to build a crystal structure from a pdb file ? (Tue Sep 20 2005 - 19:43:41 CDT)
- May I use my own radii? (Thu Mar 17 2005 - 16:17:49 CST)
Cihan Aydin
- vmdnumpy for IED... (Sun Jun 14 2009 - 17:42:36 CDT)
cipitaua_at_gmail.com
- Re: bug in the g(r) evaluation? (Wed Apr 23 2008 - 07:50:12 CDT)
- Re: bug in the g(r) evaluation? (Tue Apr 22 2008 - 11:06:14 CDT)
- bug in the g(r) evaluation? (Tue Apr 22 2008 - 09:30:37 CDT)
Claire Zerafa
- RENDER ISSUES (Thu Jun 07 2007 - 08:48:17 CDT)
- rendering problems (Thu Jun 07 2007 - 09:37:13 CDT)
- Fw: visualising bonds in vmd (Wed Sep 07 2005 - 16:02:25 CDT)
- visualising bonds in vmd (Wed Sep 07 2005 - 08:00:31 CDT)
- visualising protein dynamics (Wed Jun 22 2005 - 12:39:55 CDT)
- vmd load molecule problem (Fri Jun 17 2005 - 06:30:29 CDT)
- RUNNING VMD (Thu Mar 03 2005 - 12:42:35 CST)
Claw Isthelaw
- How to embed 3-D image into powerpoint (Mon Aug 04 2008 - 15:15:33 CDT)
- RE: Create atom selection from list of integers (Mon Jun 02 2008 - 13:10:12 CDT)
- Re: Selecting the N-closest Waters (Mon Jun 02 2008 - 13:25:51 CDT)
- Create atom selection from list of integers (Mon Jun 02 2008 - 11:01:49 CDT)
- RE: plotting on Mac (Sat Aug 11 2007 - 19:53:35 CDT)
- Broken tube drawing method? (Thu Jul 05 2007 - 00:17:37 CDT)
- RE: Installation Error Involving TLC (Sun May 27 2007 - 22:37:30 CDT)
- RE: Automatically shutting down VMD after NAMD terminates IMD connection (Sun May 20 2007 - 16:20:30 CDT)
- Automatically shutting down VMD after NAMD terminates IMD connection (Sat May 19 2007 - 13:23:42 CDT)
Clinton Sylvester
- Watches made to impress (Thu May 01 2008 - 10:40:03 CDT)
cmhartshorn
- Re: selecting waters (Mon May 11 2009 - 17:31:55 CDT)
cmorton_at_medstv.unimelb.edu.au
- Other glasses with CE emitters? (Thu Feb 24 2005 - 17:20:58 CST)
cojocaru vlad
- a question (Mon Feb 05 2001 - 10:24:40 CST)
Cojocaru,Vlad
- RE: cvs plugins do not compile because of errors in the sgsmooth.C (Tue Mar 31 2009 - 13:40:47 CDT)
- RE: warnings during plugin build (Mon Apr 21 2008 - 18:35:21 CDT)
- RE: warnings during plugin build (Sun Apr 20 2008 - 12:37:39 CDT)
- RE: warnings during plugin build (Sun Apr 20 2008 - 03:51:17 CDT)
- RE: warnings during plugin build (Sat Apr 19 2008 - 17:53:58 CDT)
- RE: warnings during plugin build (Sat Apr 19 2008 - 13:34:22 CDT)
- warnings during plugin build (Sat Apr 19 2008 - 09:09:32 CDT)
- RE: compilation with python 2.5 and file permissions from the CVS repository (Sun Apr 13 2008 - 14:50:44 CDT)
- compilation with python 2.5 and file permissions from the CVS repository (Sun Apr 13 2008 - 12:24:52 CDT)
- RE: bilayer thickness in simulation of POPC membranes (Sun Aug 12 2007 - 02:54:44 CDT)
- RE: bilayer thickness in simulation of POPC membranes (Sat Aug 11 2007 - 10:08:28 CDT)
- RE: save state fails (Thu Aug 02 2007 - 13:41:29 CDT)
- RE: increase light under depth cueing (Sun Apr 29 2007 - 15:12:54 CDT)
- message in the console (Sun Dec 18 2005 - 13:42:18 CST)
- Re: compilation from source: make error message (Mon Dec 12 2005 - 15:06:08 CST)
- sorry John .. I found them (Thu Dec 08 2005 - 15:07:07 CST)
- plugin source tree (Thu Dec 08 2005 - 14:57:46 CST)
- babel compilation error (Thu Dec 08 2005 - 14:26:38 CST)
- python: it doesnt work (Tue Dec 06 2005 - 16:34:13 CST)
- Python libraries for vmd: _tkinter was not enabled in Modules/Setup (Tue Dec 06 2005 - 14:45:55 CST)
- RE: MSMS problem (Mon Dec 05 2005 - 13:36:33 CST)
- the same old IED problem (Sun Dec 04 2005 - 14:01:07 CST)
- MSMS problem (Sun Dec 04 2005 - 06:05:43 CST)
- MSMS problem (Sat Dec 03 2005 - 02:40:29 CST)
Come On
- Re: how to make movies from HISTORY file (Wed Jun 07 2006 - 04:20:15 CDT)
- how to make movies from HISTORY file (Tue Jun 06 2006 - 13:11:55 CDT)
cong chen
- Re: about TkConsole (Wed Apr 08 2009 - 07:27:52 CDT)
- Re: about TkConsole (Tue Apr 07 2009 - 20:04:45 CDT)
- about TkConsole (Mon Apr 06 2009 - 23:16:19 CDT)
- about measure dihedral angle (Thu May 08 2008 - 20:53:08 CDT)
- about writepdb (Mon May 05 2008 - 00:08:53 CDT)
- atomselect (Wed Apr 16 2008 - 19:58:18 CDT)
- Problems with PDB file format in VMD (Thu Mar 27 2008 - 18:55:38 CDT)
- Test (Tue Mar 25 2008 - 18:39:50 CDT)
Corenflos, Steven Charles
- TCL/VMD problem (Wed Mar 05 2008 - 11:59:20 CST)
- namd help? (Tue Feb 05 2008 - 12:15:47 CST)
- RE: Problems Opening Large .dx File (Wed Oct 17 2007 - 17:09:54 CDT)
- Problems Opening Large .dx File (Mon Oct 15 2007 - 11:30:04 CDT)
Corine Brady
- Tag Heuer replicas better than originals (Sun Apr 20 2008 - 07:33:41 CDT)
Cosmin ROMAN
- Re: variable atom number and dynamic bonds (Wed May 05 2004 - 16:53:56 CDT)
- Re: variable atom number and dynamic bonds (Wed May 05 2004 - 17:34:23 CDT)
- variable atom number and dynamic bonds (Wed May 05 2004 - 10:55:19 CDT)
- Re: coloring method User (Mon Mar 22 2004 - 11:56:03 CST)
- coloring method User (Sun Mar 21 2004 - 09:05:23 CST)
cpao_at_Princeton.EDU
- question about rendering images (Wed Sep 22 2004 - 16:54:38 CDT)
craig bullington
- Tcl commands and X11 (Fri Jun 12 2009 - 11:48:37 CDT)
- MSMS installation (Mon Jun 08 2009 - 14:27:57 CDT)
Craig C. Martens
- VMD error messages on intel iMac (Wed Jan 31 2007 - 23:32:32 CST)
Craig Knox
- rod-like shapes (Fri Jan 20 2006 - 16:49:21 CST)
Craig Maloney
- psfgen vs. x-plor (Tue Nov 08 2005 - 20:01:52 CST)
- python can't find math module (Tue Nov 01 2005 - 15:50:10 CST)
- MacOS 10.4 problems (Fri Oct 28 2005 - 00:13:25 CDT)
- Re: tcl/python and readline not working (Fri Oct 28 2005 - 00:05:47 CDT)
- tcl/python and readline not working (Wed Oct 26 2005 - 17:48:27 CDT)
- core API? (Wed Oct 26 2005 - 13:46:38 CDT)
- Re: making bonds myself (Tue Oct 25 2005 - 20:05:04 CDT)
- making bonds myself (Tue Oct 25 2005 - 19:16:32 CDT)
Craig Morton
- Dialboxes (Sun Jul 22 2001 - 21:36:49 CDT)
Craig Shepherd
- suggested citation vs. pubmed entry (Thu Jul 01 2004 - 13:18:58 CDT)
- suggested citation versus pubmed entry (Wed Jun 30 2004 - 19:00:19 CDT)
cristiana.carellialinovi_at_rm.unicatt.it
- secondary structure colors in timeline plugin (Fri Sep 14 2007 - 07:51:31 CDT)
- secondary structure colors in timeline plugin (Fri Sep 14 2007 - 06:24:30 CDT)
Cristina
- Re: question about electrostatic map visualizing (Tue Oct 26 2004 - 13:00:13 CDT)
- question about electrostatic map visualizing (Sat Sep 04 2004 - 11:02:47 CDT)
Crowley, Michael
- Reading new amber prmtop formats. (Wed Sep 16 2009 - 12:21:42 CDT)
- too many bonds (Sun Apr 05 2009 - 01:27:03 CDT)
- (no subject) (Sun Apr 05 2009 - 00:48:58 CDT)
CSM USP
- PSF files append!! (Wed Nov 15 2006 - 13:06:06 CST)
cyclone_at_team.planetsweep.com
- New Release: Planetsweep Revolutionizes Internet Browsing (Mon Apr 09 2001 - 13:13:23 CDT)
César Dp
- "Unable to create OpenGL window" (Tue Jul 18 2006 - 15:20:55 CDT)
César Filipe Barbosa Ribeiro
- (no subject) (Sun Dec 02 2001 - 13:50:44 CST)
Dafydd Jones
- VMD 1.8.1 MacOSX running very slow on new G4 1 GHz Powerbook (Thu Oct 23 2003 - 07:00:38 CDT)
Dai Ling
- How to install VMD on AIX5 OpenGL server (Tue Jan 20 2004 - 04:52:47 CST)
Dallas B. Warren
- deleting at vmd console (Thu Feb 15 2007 - 22:23:01 CST)
- HBonds Representation (Tue Oct 10 2006 - 23:04:35 CDT)
- RE: Unexpected End-of-file? (Thu Aug 24 2006 - 17:38:28 CDT)
- RE: What's wrong with my VMD (Thu Oct 13 2005 - 21:02:12 CDT)
- RE: Show a movie from one static structure to another in VMD? (Wed Oct 12 2005 - 19:51:36 CDT)
- RE: How to build a crystal structure from a pdb file ? (Wed Sep 21 2005 - 18:20:02 CDT)
- RE: problem with coloring surface by electrostatic potential (Tue Sep 20 2005 - 20:54:12 CDT)
- RE: small figures (Sun Aug 21 2005 - 18:51:33 CDT)
- RE: What is missing when using VMDSIMPLEGRAPHICS 1? (Fri May 13 2005 - 21:31:43 CDT)
- RE: What is missing when using VMDSIMPLEGRAPHICS 1? (Fri May 13 2005 - 02:07:05 CDT)
- What is missing when using VMDSIMPLEGRAPHICS 1? (Thu May 12 2005 - 23:13:20 CDT)
Dallas Warren
- Re: May I use my own radii? (Thu Mar 17 2005 - 19:00:58 CST)
- Re: install 1.8.3 on RHEL4 (Thu Mar 17 2005 - 16:16:25 CST)
- Re: Catching error info before it shuts down ... (Wed Feb 23 2005 - 17:30:39 CST)
- Re: Catching error info before it shuts down ... (Wed Feb 23 2005 - 16:49:33 CST)
- Re: Catching error info before it shuts down ... (Wed Feb 23 2005 - 16:23:33 CST)
- Re: Catching error info before it shuts down ... (Mon Feb 21 2005 - 16:49:50 CST)
- Re: Catching error info before it shuts down ... (Mon Feb 21 2005 - 00:02:51 CST)
- Re: Catching error info before it shuts down ... (Sun Feb 20 2005 - 16:03:51 CST)
- Catching error info before it shuts down ... (Thu Feb 17 2005 - 23:41:08 CST)
- Re: HOW TO: visualization of electron density maps (Mon Jan 24 2005 - 15:34:41 CST)
- Re: Rotating and translating molecules .. (Wed Jan 19 2005 - 17:04:06 CST)
- Re: Rotating and translating molecules .. (Wed Jan 19 2005 - 15:02:48 CST)
- Rotating and translating molecules .. (Tue Jan 18 2005 - 19:15:56 CST)
- Re: Rendering of screen/display different (Mon Apr 26 2004 - 20:45:57 CDT)
- Re: Rendering of screen/display different (Mon Apr 26 2004 - 20:28:14 CDT)
- Re: Rendering of screen/display different (Sun Apr 25 2004 - 16:11:12 CDT)
- Re: Rendering of screen/display different (Thu Apr 22 2004 - 17:21:36 CDT)
- Re: Rendering of screen/display different (Wed Apr 21 2004 - 16:40:10 CDT)
- Rendering of screen/display different (Wed Apr 21 2004 - 00:36:56 CDT)
- Rendering of screen/display different (Wed Apr 21 2004 - 00:36:12 CDT)
- Re: rotating a representation (Mon Mar 08 2004 - 15:39:53 CST)
- Re: any body else have VMD problems with Linux + ATI FireGL X1-256p + fglrx-glc22-4.3.0-3.7.0 (Wed Feb 11 2004 - 17:14:28 CST)
- Re: New version very slow? (Thu Jan 08 2004 - 20:17:17 CST)
- Re: New version very slow? (Thu Dec 11 2003 - 00:53:38 CST)
- Re: New version very slow? (Wed Dec 10 2003 - 22:21:49 CST)
- New version very slow? (Tue Dec 09 2003 - 19:45:09 CST)
- Setting default viewing window location in XP (Mon Oct 13 2003 - 19:40:48 CDT)
- Re: PLT file format? (Tue Jul 15 2003 - 17:58:30 CDT)
- Re: PLT file format? (Thu Jun 19 2003 - 16:39:43 CDT)
- PLT file format? (Wed Jun 18 2003 - 01:55:31 CDT)
- Re: Support Contours? (Tue Jun 17 2003 - 21:28:26 CDT)
- Support Contours? (Wed Jun 11 2003 - 17:16:09 CDT)
- Re: Molecular dynamics order parameters (Tue May 20 2003 - 16:58:09 CDT)
- Re: Graphics Cards (Mon May 19 2003 - 17:06:30 CDT)
- Graphics Cards (Sun May 18 2003 - 17:55:37 CDT)
- PBC - setting box size (Thu Mar 20 2003 - 20:43:35 CST)
Damian Loska
- VMD, MultiSeq, STAMP (Sun Aug 30 2009 - 11:42:14 CDT)
Damien Touraine
- external ??? (Thu Feb 02 2006 - 09:45:11 CST)
Dan Fishelovitch
- vmd 1.8a21 (Sun Apr 16 2006 - 10:02:34 CDT)
Dan Gordon
- Re: tkconsole and intel macs (Tue May 29 2007 - 19:21:03 CDT)
- tkconsole and intel macs (Sun May 27 2007 - 20:32:11 CDT)
Dan Lussier
- Re: getting other variables out of LAMMPS ascii dump files (Thu Jul 16 2009 - 04:46:03 CDT)
- Re: getting other variables out of LAMMPS ascii dump files (Tue Jul 14 2009 - 17:31:57 CDT)
- getting other variables out of LAMMPS ascii dump files (Mon Jul 13 2009 - 13:44:23 CDT)
- constant region selection for animation (Thu Jun 25 2009 - 09:55:00 CDT)
- Re: pbctools on alpha version (Wed Apr 22 2009 - 03:46:23 CDT)
- pbctools on alpha version (Fri Apr 17 2009 - 09:05:06 CDT)
- Re: OS X intel binary problem (Sun Apr 05 2009 - 09:40:26 CDT)
- OS X intel binary problem (Sun Apr 05 2009 - 03:02:20 CDT)
Dan Strahs
- compile problem for VMD1.8.6: OpenGLRenderer.C (Sat Mar 08 2008 - 20:17:23 CST)
- Win64 version (Wed Sep 06 2006 - 14:51:10 CDT)
- Re: dots per inch? (Wed Oct 19 2005 - 16:46:02 CDT)
- matrix transforms of volume objects (Thu Oct 13 2005 - 20:18:06 CDT)
- Re: problem with coloring surface by electrostatic potential (Tue Sep 20 2005 - 18:04:15 CDT)
- Re: problem with coloring surface by electrostatic potential (Tue Sep 20 2005 - 16:40:09 CDT)
- problem with coloring surface by electrostatic potential (Tue Sep 20 2005 - 11:13:58 CDT)
- keywords to access surface? (Fri Sep 16 2005 - 19:44:53 CDT)
- Re: CAVE (Wed Sep 07 2005 - 08:59:22 CDT)
- coloring surface by volume (Fri Aug 26 2005 - 20:05:55 CDT)
Dan thomas Major
- viewing MOs (Fri Aug 28 2009 - 09:47:34 CDT)
Dan White
- Fwd: Crystal eyes stereo on un supported Mac G5 GeForce FX5200 (Fri Aug 18 2006 - 09:15:23 CDT)
- Re: stereo enabler (Fri Mar 31 2006 - 03:08:21 CST)
- Re: Stereo on non supported G5 (Fri Mar 31 2006 - 02:12:42 CST)
- Re: stereo on MacG5 with Nvidia GeForce FX 5200 (Wed Mar 29 2006 - 14:15:45 CST)
- stereo on MacG5 (Wed Mar 29 2006 - 12:36:16 CST)
- Re: OSX quad buffered stereo possible on older G5 with GeForce FX5200! (Mon Mar 13 2006 - 08:17:46 CST)
- Re: vmd movie ppmtompeg (Thu Jan 26 2006 - 01:42:09 CST)
- Re: mpeg1 movie output makes 0Kb file - any one know why? (Thu Jan 12 2006 - 10:42:38 CST)
- mpeg1 movie output makes 0Kb file - any one know why? (Thu Jan 12 2006 - 08:13:42 CST)
Dan Willenbring
- volmap masks (Wed Feb 25 2009 - 14:17:32 CST)
Dan Wright
- Re: VMD window transparent in Opensuse 11.1 ATI system (Tue Jan 20 2009 - 15:13:21 CST)
- Re: Batch mode on Mac OS 10.5.3 (Tue Jun 03 2008 - 11:24:22 CDT)
- Re: Installation and running on VMD on Debian Testing System (Wed Oct 03 2007 - 12:05:38 CDT)
- Re: installing MSMS on OS X 10.4.9 (Intel) (Tue May 08 2007 - 16:58:43 CDT)
- Re: Question about RMSD calculator (Tue Dec 12 2006 - 16:20:58 CST)
- Re: VMD 1.8.5 startup (Thu Nov 09 2006 - 07:47:03 CST)
- Re: vmd-1.8.4b10/Linux amd64 only libstdc++.so.6 dependancy (Wed Feb 08 2006 - 22:26:53 CST)
- Re: Tcl scripting (Wed Feb 08 2006 - 12:14:41 CST)
- Re: illegal mouse mode (Fri Nov 11 2005 - 17:00:07 CST)
- Re: IRIX6 build from CVS (Tue Nov 08 2005 - 10:14:45 CST)
- Re: RMSD of identical pdbs not zero (Tue Sep 13 2005 - 09:30:02 CDT)
- Re: weird atomselect problem (Mon Aug 01 2005 - 15:19:03 CDT)
- Re: weird atomselect problem (Mon Aug 01 2005 - 08:56:56 CDT)
- Color bar in VMD (Fri Apr 22 2005 - 16:23:36 CDT)
- Re: Keyboard mapping incorrect for OS X (Thu Feb 17 2005 - 21:48:21 CST)
- Re: multiple alignment tool (Fri Feb 04 2005 - 16:23:32 CST)
Dani Süveges
- modelling phosphorylation (Mon Sep 18 2006 - 04:45:55 CDT)
daniel aguayo
- Re: Tachyon Rendering (Tue Oct 27 2009 - 14:14:55 CDT)
- Tachyon Rendering (Tue Oct 27 2009 - 10:27:52 CDT)
- Re: How to generate a monolayer in VMD (Tue Oct 06 2009 - 13:16:43 CDT)
- Re: using VMD 1.8.7 on a Mac (Tue Aug 25 2009 - 12:53:02 CDT)
- Re: Cionize on mac cuda (Mon Aug 17 2009 - 19:28:30 CDT)
- Re: Cionize on mac cuda (Tue Aug 11 2009 - 13:16:04 CDT)
- Re: Cionize on mac cuda (Wed Aug 05 2009 - 20:46:10 CDT)
- Cionize on mac cuda (Wed Aug 05 2009 - 20:29:07 CDT)
- Re: VMD HOLE Result (Tue Jun 02 2009 - 17:03:26 CDT)
- Re: Away from VMD-L/email until July 8th... (Fri Jun 20 2008 - 16:27:34 CDT)
- Re: Electrostatic - PMEpot (Mon Jun 16 2008 - 09:02:08 CDT)
- Electrostatic - PMEpot (Fri Jun 13 2008 - 12:23:22 CDT)
- Re: VMD 1.8.6 GLSL problem (Tue Apr 10 2007 - 10:11:36 CDT)
- Re: VMD 1.8.6 GLSL problem (Tue Apr 10 2007 - 01:21:34 CDT)
- VMD 1.8.6 GLSL problem (Mon Apr 09 2007 - 01:08:04 CDT)
- Re: Locating channel using hole (Tue Mar 06 2007 - 14:28:24 CST)
- Re: Paratool problem (Mon Nov 27 2006 - 21:44:22 CST)
- Re: Paratool problem (Mon Nov 20 2006 - 19:03:17 CST)
- Paratool problem (Wed Nov 15 2006 - 13:29:58 CST)
- Re: protein in membrane (Wed Sep 13 2006 - 21:32:19 CDT)
- Paratool problem (Wed Aug 30 2006 - 18:35:36 CDT)
- Re: Problem with wait (Tue Apr 25 2006 - 14:43:21 CDT)
- Problem with wait (Mon Apr 24 2006 - 20:39:19 CDT)
- Re: Tcl scripting (Tue Feb 07 2006 - 17:34:22 CST)
- Re: dublicated residue name in PDB/PSF (Wed Feb 01 2006 - 12:24:16 CST)
- Re: get values from openDx grid format (Wed Jan 18 2006 - 12:45:07 CST)
- get values from openDx grid format (Mon Jan 16 2006 - 19:25:57 CST)
- Re: get values from openDx grid format (Mon Jan 16 2006 - 19:00:34 CST)
- get values from openDx grid format (Sun Jan 15 2006 - 19:33:45 CST)
Daniel B. Faken
- Python interface (was: Accessing TCL through Python interface) (Fri May 20 2005 - 08:34:00 CDT)
- Accessing TCL through Python interface (Sat May 14 2005 - 15:09:35 CDT)
- 1.8.3 (Fri Jul 30 2004 - 09:36:52 CDT)
Daniel Barsky
- counting selected atoms---selection time series (Wed Aug 31 2005 - 12:57:32 CDT)
- crystallographic symmetry tool (Wed Dec 05 2001 - 19:11:35 CST)
- Re: Prachi Singh's mail (Mon Jun 05 2000 - 16:35:06 CDT)
Daniel Beaman
- Re: Trying to get VMD to run locally while logged into a remote machine (Mon Nov 26 2007 - 20:09:30 CST)
- Re: Trying to get VMD to run locally while logged into a remote machine (Mon Nov 26 2007 - 19:30:32 CST)
- Re: Trying to get VMD to run locally while logged into a remote machine (Mon Nov 26 2007 - 17:27:48 CST)
- Trying to get VMD to run locally while logged into a remote machine (Tue Nov 20 2007 - 16:04:57 CST)
Daniel Gaston
- Re: Some VMD questions (Tue Jun 30 2009 - 13:10:14 CDT)
- Re: Secondary Structure Depiction (Tue Apr 21 2009 - 12:01:08 CDT)
- Re: Secondary Structure Depiction (Tue Apr 21 2009 - 12:02:29 CDT)
- Re: Secondary Structure Depiction (Tue Apr 21 2009 - 10:29:03 CDT)
- Secondary Structure Depiction (Tue Apr 21 2009 - 09:25:08 CDT)
- Re: RMSD-gaps (Mon Apr 20 2009 - 18:57:33 CDT)
Daniel Han
- sidechain atomselection (Wed Jan 26 2005 - 18:53:55 CST)
Daniel Kennedy
- problems with ADP vanadate (Sun Sep 16 2007 - 11:12:09 CDT)
- residue missed by psfgen (Mon Aug 20 2007 - 12:09:05 CDT)
- Monte Carlo conformational search (Wed Aug 08 2007 - 11:23:54 CDT)
- water sphere? (Tue Jul 17 2007 - 16:40:57 CDT)
Daniel Schwaab
- Self Assembled Monolayer (Tue May 31 2005 - 09:48:06 CDT)
Daniel Strahs
- Re: keywords to access surface? (Sun Sep 18 2005 - 18:39:00 CDT)
Danielle Chandler
- Re: lipid tail selection (Thu Oct 09 2008 - 14:30:37 CDT)
Darrell Kuykendall
- Re: Paratool Problem (Thu Sep 21 2006 - 10:55:20 CDT)
- Paratool Problem (Thu Sep 21 2006 - 13:50:01 CDT)
Darui Xu
- ribbon representation (Fri Oct 17 2003 - 11:28:31 CDT)
- vrml (Wed Sep 24 2003 - 11:19:37 CDT)
Dave Humbird
- OpenGLExtensions.C compile problem (Wed Sep 10 2003 - 18:52:59 CDT)
Dave Pugmire
- Re: VMD and chromium (Mon Nov 03 2003 - 16:39:55 CST)
- Re: VMD and chromium (Fri Oct 31 2003 - 17:56:43 CST)
- VMD and chromium (Fri Oct 31 2003 - 14:00:56 CST)
David A. Horita
- keeping original coordinates in trajectory (Wed Mar 09 2005 - 14:27:28 CST)
- RE: amd64/nvidiaFX1100/linux crash (Tue Oct 05 2004 - 17:19:49 CDT)
- amd64/nvidiaFX1100/linux crash (Tue Oct 05 2004 - 16:00:07 CDT)
David A. Case
- Re: time correlation function (Thu Mar 27 2008 - 16:35:11 CDT)
- Re: how to wrap trajectory into truncated octahedral box (Mon Jul 30 2007 - 11:30:15 CDT)
- Re: IED, output from nmode (amber) (Tue Sep 12 2006 - 10:18:35 CDT)
- Re: incompatibility between VMD & NAMD for reading Amber crd files (Wed Jun 23 2004 - 12:39:42 CDT)
David Brandon
- "Hands-On" Workshop on Computational Biophysics (Tue Mar 08 2005 - 11:54:35 CST)
David Chalmers
- Graphics cards (Sun Sep 10 2006 - 23:11:58 CDT)
- NewCartoon and mol2 files (Wed May 31 2006 - 06:11:33 CDT)
- Playing part of a trajectory using TCL (Tue May 02 2006 - 05:30:37 CDT)
- Reading in unit cell (Mon Nov 17 2003 - 17:45:13 CST)
- NAMD constant pressure/temp advice (Mon Sep 01 2003 - 03:06:35 CDT)
- Molecular dynamics order parameters (Tue May 20 2003 - 06:47:18 CDT)
- Another feature request for vmd 1.8 (Mon Oct 28 2002 - 20:02:15 CST)
- Using VMD to edit dynamics output (Sun Oct 01 2000 - 22:47:14 CDT)
David E. Jones
- Wavefront obj output (Wed Mar 12 1997 - 13:40:03 CST)
- Re: linux graphics adapters? (Thu Jul 13 2000 - 14:43:06 CDT)
David F. Green
- Re: vmd psfgen problem with CHARMM (Thu Jul 15 2004 - 15:29:50 CDT)
David Horita
- extracting distances (Wed Dec 09 1998 - 17:00:54 CST)
David Kingsbury
- Re: Coloring by BETA not updating per frame (Sun Jul 24 2005 - 23:39:25 CDT)
- Re: Coloring by BETA not updating per frame (Sun Jul 24 2005 - 20:45:47 CDT)
- Coloring by BETA not updating per frame (Sat Jul 23 2005 - 11:16:09 CDT)
David L. Azevedo
- Problems with PSFGEN in Simulation of Water Permeation through nanotubes (Fri Sep 24 2004 - 08:52:13 CDT)
David Norris
- Re: POV render fails 2nd time (Fri May 26 2000 - 15:15:51 CDT)
- Re: More than 99999 atoms? (Fri May 26 2000 - 09:51:19 CDT)
David Poger
- RE: VMD on MacOSX 10.6 Snow Leopard: fast (Mon Sep 07 2009 - 04:01:48 CDT)
- Re: How to reduce memory usage of a script? (Tue Aug 05 2008 - 02:18:05 CDT)
- Re: How to reduce memory usage of a script? (Tue Aug 05 2008 - 00:24:10 CDT)
- How to reduce memory usage of a script? (Mon Aug 04 2008 - 20:31:10 CDT)
- Re: Problem to find the number of frames of a trajectory (Mon Jul 21 2008 - 23:58:48 CDT)
- Problem to find the number of frames of a trajectory (Mon Jul 21 2008 - 20:19:01 CDT)
- Normal mode analysis (Tue Apr 19 2005 - 08:02:57 CDT)
David Schall
- Dynamic bonds and H2 molecules. (Tue Nov 13 2007 - 11:17:30 CST)
- dynamic bonds question?? (Thu Sep 09 2004 - 16:20:47 CDT)
David Tanner
- Re: Linking to molfile_plugin libraries (Fri May 29 2009 - 13:30:24 CDT)
- Linking to molfile_plugin libraries (Fri May 29 2009 - 13:02:59 CDT)
- Re: Linking to molfile_plugin libraries (Fri May 29 2009 - 13:18:28 CDT)
- Re: Adding two separate pdb files: Lipid Bilayer's with Protein's (Tue May 19 2009 - 11:00:30 CDT)
- Re: Manipulating dcd using script in VMD (Tue Apr 28 2009 - 08:07:24 CDT)
- representation ColorID in Tcl (Wed Nov 19 2008 - 11:25:42 CST)
- Re: pick atom id script (Fri Jul 11 2008 - 09:32:53 CDT)
davide\.ruffoni
- error with top2psf (Wed Apr 21 2004 - 06:04:51 CDT)
- top2psf (Mon Apr 19 2004 - 09:29:55 CDT)
Davit Hakobyan
- Re: Include HETATM into *.psf file (Thu May 06 2004 - 01:05:11 CDT)
- Include HETATM into *.psf file (Mon May 03 2004 - 14:04:32 CDT)
Dawn
- time-averaged RMSD per residue (Fri Jul 24 2009 - 08:06:08 CDT)
- the scripting interface (Sun Mar 08 2009 - 10:00:19 CDT)
- correlation (Sun Mar 08 2009 - 03:05:49 CDT)
Dayong He
- The pdb format of vmd (Thu Jan 22 1998 - 11:01:58 CST)
dbg
- VMD installation (Fri Apr 13 2007 - 01:09:54 CDT)
- compile a plugin source code (Fri Apr 13 2007 - 06:29:59 CDT)
Dean Appling
- error loading pdb files (Tue Jan 24 2006 - 08:59:08 CST)
Dean Johnson
- Re: RMS fits (Fri Oct 18 2002 - 23:04:11 CDT)
Deanna Fleming
- Replica watch is a perfect gift (Thu Apr 17 2008 - 05:25:56 CDT)
Deepak Singh
- output (Sun Nov 14 1999 - 19:48:57 CST)
- question (Sun Nov 14 1999 - 17:00:26 CST)
- font size (Fri Nov 12 1999 - 13:38:53 CST)
- Re: SEGMENT ID (Fri Oct 22 1999 - 09:30:09 CDT)
- SEGMENT ID (Tue Oct 19 1999 - 23:45:46 CDT)
- Re: Selection (Tue Oct 17 2000 - 11:51:33 CDT)
- Re: Selection (Tue Oct 17 2000 - 11:31:12 CDT)
- Selection (Tue Oct 17 2000 - 11:08:51 CDT)
- graphing a dihedral (Sat May 13 2000 - 20:48:31 CDT)
Deepangi Pandit
- Re: Calculating volumes enclosed by SAS (Fri Nov 21 2008 - 16:09:12 CST)
- VMD access using XWIN32 or X-Deep (Fri Oct 12 2007 - 13:20:01 CDT)
- VMD access using XWIN32 or X-Deep (Fri Oct 12 2007 - 11:35:52 CDT)
Deepti Mishra
- atom selection (Sun Jun 07 2009 - 23:32:43 CDT)
- difficulty in installing VMD on linux. (Fri Sep 19 2008 - 05:47:18 CDT)
deepti sethi
- installation problem on solaris 9 (Sat Dec 31 2005 - 03:57:55 CST)
Delalande
- Compiled version for MacOSX with non-standard options (Thu Apr 17 2008 - 08:37:14 CDT)
DeLano, Warren
- RE: Stereo mode on NVidia/Win2000 (Fri Jan 24 2003 - 13:44:14 CST)
Demetrios Braddock
- map files (Mon Sep 19 2005 - 19:41:39 CDT)
- (no subject) (Thu Sep 15 2005 - 18:40:47 CDT)
Demian Riccardi
- Exceeded maximum number of bonds (Thu May 29 2008 - 13:18:09 CDT)
Denise G Teotico
- installing IED on vmd on windows (Tue Jan 03 2006 - 10:06:51 CST)
Denise Teotico
- installing IED on an sgi (Tue Jan 03 2006 - 17:35:07 CST)
Denys Bashtovyy
- hydrophobicity on the Connolly surface (Thu Jan 02 2003 - 07:04:10 CST)
DePuy
- Re: How to enable Python on Windows XP (Sat Jul 31 2004 - 17:12:20 CDT)
Derek Ng
- Background colour (Sat Nov 29 2003 - 23:38:26 CST)
Derek R. Ploor
- cavetracker (Wed Jan 16 2002 - 15:00:31 CST)
Dhiraj Srivastava
- topology file in /linux/src/vmd-1.8.6/plugins/noarch/tcl/readcharmmtop1.0/top_all27_prot_lipid_na.inp (Tue Sep 25 2007 - 19:00:30 CDT)
- Re: topology file in /linux/src/vmd-1.8.6/plugins/noarch/tcl/readcharmmtop1.0/top_all27_prot_lipid_na.inp (Tue Sep 25 2007 - 19:33:14 CDT)
diane lynch
- diplaying multiple frames from DCD file (Fri Aug 24 2001 - 15:11:20 CDT)
Dibyadeep Paul
- PSFGEN::: ERROR: failed on end of segment (Wed Feb 13 2008 - 03:38:14 CST)
- Re: merging two pdb files (Thu Nov 08 2007 - 08:24:18 CST)
- merging two pdb files (Thu Nov 08 2007 - 06:06:19 CST)
Dick Medrano
- Charlie Buy your loved one Hermes (Thu Sep 27 2007 - 20:39:34 CDT)
Dieter Blaas
- RE: installation of VIDEOMACH, how to point to the location of the files (Sun Feb 06 2005 - 16:23:26 CST)
- Re: installation of VIDEOMACH, how to point to the location of the files (Fri Feb 04 2005 - 10:22:34 CST)
- installation of VIDEOMACH, how to point to the location of the files (Fri Feb 04 2005 - 04:37:07 CST)
- HOW TO: visualization of electron density maps (Mon Jan 24 2005 - 04:28:00 CST)
- Re: ERROR) Failed to create Surf atom radii input file (Wed Dec 29 2004 - 02:42:54 CST)
- Re: ERROR) Failed to create Surf atom radii input file (Tue Dec 28 2004 - 10:02:40 CST)
- ERROR) Failed to create Surf atom radii input file (Tue Dec 28 2004 - 04:14:50 CST)
- RE: change location of temporay file storage (Win2k (Tue May 11 2004 - 08:20:31 CDT)

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