VMD-L Mailing List

From: Axel Kohlmeyer (akohlmey_at_cmm.chem.upenn.edu)
Date: Thu May 25 2006 - 05:02:29 CDT

On Thu, 25 May 2006, Jeffrey A Tibbitt wrote:

jeff,

JT> When I load in a pqr file that contains charge and radius, VMD allows me to
JT> color the atoms by charge. Can the default colors be changed to say --
JT> red (positive), white (neutral), blue (negative).

you have to change the color scheme in the color scale tab of
the color menu. please have a look at the documentation:

http://www.ks.uiuc.edu/Research/vmd/current/ug/node42.html
and so on.

axel.

JT> Jeff Tibbitt
JT> 

-- 
=======================================================================
Axel Kohlmeyer   akohlmey_at_cmm.chem.upenn.edu   http://www.cmm.upenn.edu
   Center for Molecular Modeling   --   University of Pennsylvania
Department of Chemistry, 231 S.34th Street, Philadelphia, PA 19104-6323
tel: 1-215-898-1582,  fax: 1-215-573-6233,  office-tel: 1-215-898-5425
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If you make something idiot-proof, the universe creates a better idiot.