VMD-L Mailing List

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About this archive

Starting: Thu Dec 19 1996 - 11:40:41 CST
Ending: Fri Nov 06 2009 - 19:24:04 CST

Re: VMD autopsfgen and Mg2+ Peter Freddolino (Fri Nov 06 2009 - 19:23:54 CST)
plugin for reading (and writing) trajectories with a varying number of atoms Axel Kohlmeyer (Fri Nov 06 2009 - 14:51:02 CST)
Re: VMD autopsfgen and Mg2+ John Stone (Fri Nov 06 2009 - 09:55:29 CST)
Re: VMD autopsfgen and Mg2+ Luis Agullo (LAB) (Fri Nov 06 2009 - 03:58:19 CST)
Re: VMD autopsfgen and Mg2+ Peter Freddolino (Thu Nov 05 2009 - 20:02:41 CST)
Re: VMD autopsfgen and Mg2+ Peter Freddolino (Thu Nov 05 2009 - 09:03:44 CST)
Re: Question about Keyboaerd events send from other PC John Stone (Thu Nov 05 2009 - 08:46:50 CST)
Question about Keyboaerd events send from other PC Christian Wohlschlager (Thu Nov 05 2009 - 02:29:36 CST)
Re: Control of aminoacid ionization in VMD Luis Agullo (LAB) (Thu Nov 05 2009 - 02:24:26 CST)
Re: VMD autopsfgen and Mg2+ Luis Agullo (LAB) (Thu Nov 05 2009 - 02:18:43 CST)
Re: VMD autopsfgen and Mg2+ sarah k (Wed Nov 04 2009 - 23:47:20 CST)
Re: VMD autopsfgen and Mg2+ John Stone (Wed Nov 04 2009 - 09:49:17 CST)
rmsd calculation and plot sarah k (Tue Nov 03 2009 - 23:18:29 CST)
Re: running under Shell using VMD Axel Kohlmeyer (Tue Nov 03 2009 - 21:43:33 CST)
Re: radius of gyration units John Stone (Tue Nov 03 2009 - 16:32:20 CST)
Re: radius of gyration units Roman Petrenko (Tue Nov 03 2009 - 16:18:24 CST)
Re: Matrix: Warning: no convergence (0.00000000<390.26229858 after 1000 iterations). John Stone (Tue Nov 03 2009 - 16:18:43 CST)
Re: radius of gyration units John Stone (Tue Nov 03 2009 - 16:13:10 CST)
Re: radius of gyration units Roman Petrenko (Tue Nov 03 2009 - 15:59:54 CST)
Re: radius of gyration units Leonardo Trabuco (Tue Nov 03 2009 - 15:13:19 CST)
radius of gyration units Bernardo Sosa Padilla Araujo (Tue Nov 03 2009 - 15:08:36 CST)
Matrix: Warning: no convergence (0.00000000<390.26229858 after 1000 iterations). Bob Johnson (Tue Nov 03 2009 - 14:49:29 CST)
Re: running under Shell using VMD John Stone (Tue Nov 03 2009 - 09:11:05 CST)
Re: running under Shell using VMD Nuno Sousa Cerqueira (Tue Nov 03 2009 - 07:41:11 CST)
Re: Control of aminoacid ionization in VMD L. Michel Espinoza-Fonseca (Tue Nov 03 2009 - 05:24:46 CST)
Re: running under Shell using VMD Nicolas Sapay (Tue Nov 03 2009 - 05:07:45 CST)
Control of aminoacid ionization in VMD Luis Agullo (LAB) (Tue Nov 03 2009 - 04:50:55 CST)
VMD autopsfgen and Mg2+ Luis Agullo (LAB) (Tue Nov 03 2009 - 04:17:59 CST)
running under Shell using VMD Nuno Sousa Cerqueira (Tue Nov 03 2009 - 02:29:30 CST)
Re: Using Tcl functions in a C-plugin Olaf Lenz (Mon Nov 02 2009 - 14:57:49 CST)
Re: Using Tcl functions in a C-plugin John Stone (Mon Nov 02 2009 - 14:08:27 CST)
Re: dll by c++ cannot be recognized by VMD tk console ? John Stone (Mon Nov 02 2009 - 13:57:35 CST)
Re: movie rendering John Stone (Mon Nov 02 2009 - 13:54:09 CST)
Re: memory issues John Stone (Mon Nov 02 2009 - 13:50:12 CST)
memory issues Paymon Pirzadeh (Mon Nov 02 2009 - 12:02:14 CST)
Using Tcl functions in a C-plugin Olaf Lenz (Mon Nov 02 2009 - 07:29:24 CST)
movie rendering Liang, Linus H. (Mon Nov 02 2009 - 07:08:35 CST)
dll by c++ cannot be recognized by VMD tk console ? vmd_chcwaaa (Sun Nov 01 2009 - 01:32:42 CDT)
Re: RBCG bead diameter Axel Kohlmeyer (Sat Oct 31 2009 - 14:42:05 CDT)
Re: using NAMD with SPC water Axel Kohlmeyer (Sat Oct 31 2009 - 14:23:13 CDT)
full version OEM soft chucruz_at_ks.uiuc.edu (Thu Oct 29 2009 - 23:14:25 CDT)
Downloadable version chucruz_at_ks.uiuc.edu (Thu Oct 29 2009 - 02:51:04 CDT)
RBCG bead diameter Christine Horejs (Wed Oct 28 2009 - 11:54:50 CDT)
Re: namd-l: abnormal water surface after nvt and npt for POPC membrane Axel Kohlmeyer (Wed Oct 28 2009 - 10:55:16 CDT)
Re: Unable to find Stride output file: /usr/tmp/... Roman Petrenko (Tue Oct 27 2009 - 15:13:10 CDT)
Re: Tachyon Rendering daniel aguayo (Tue Oct 27 2009 - 14:14:55 CDT)
Re: Unable to find Stride output file: /usr/tmp/... Axel Kohlmeyer (Tue Oct 27 2009 - 13:18:17 CDT)
Re: Unable to find Stride output file: /usr/tmp/... John Stone (Tue Oct 27 2009 - 12:56:51 CDT)
Re: Unable to find Stride output file: /usr/tmp/... Bob Johnson (Tue Oct 27 2009 - 12:47:55 CDT)
Re: Unable to find Stride output file: /usr/tmp/... John Stone (Tue Oct 27 2009 - 12:45:16 CDT)
Re: Unable to find Stride output file: /usr/tmp/... Bob Johnson (Tue Oct 27 2009 - 12:42:06 CDT)
Re: Unable to find Stride output file: /usr/tmp/... John Stone (Tue Oct 27 2009 - 12:37:28 CDT)
Unable to find Stride output file: /usr/tmp/... Bob Johnson (Tue Oct 27 2009 - 12:22:03 CDT)
Re: lammpstrj file as pdb John Stone (Tue Oct 27 2009 - 12:21:49 CDT)
Re: lammpstrj file as pdb Christine Horejs (Tue Oct 27 2009 - 12:18:15 CDT)
Re: lammpstrj file as pdb John Stone (Tue Oct 27 2009 - 12:06:56 CDT)
Re: Tachyon Rendering John Stone (Tue Oct 27 2009 - 12:05:06 CDT)
lammpstrj file as pdb Christine Horejs (Tue Oct 27 2009 - 11:50:06 CDT)
Re: Tachyon Rendering Axel Kohlmeyer (Tue Oct 27 2009 - 11:23:48 CDT)
Re: using NAMD with SPC water politr_at_huji.ac.il (Tue Oct 27 2009 - 11:12:21 CDT)
Tachyon Rendering daniel aguayo (Tue Oct 27 2009 - 10:27:52 CDT)
RBCG Model Katherine Parra (Tue Oct 27 2009 - 09:19:55 CDT)
Re: pbwithin and within differences Roman Petrenko (Tue Oct 27 2009 - 09:09:36 CDT)
order parameters for long lipids Raul Araya (Tue Oct 27 2009 - 08:47:38 CDT)
Re: pbwithin and within differences Olaf Lenz (Tue Oct 27 2009 - 08:26:08 CDT)
pbwithin and within differences Gustavo Gust (Tue Oct 27 2009 - 06:48:51 CDT)
Re: Solvate-GUI Problem: Collapses Solvent to Origin Peter Freddolino (Mon Oct 26 2009 - 21:31:23 CDT)
Solvate-GUI Problem: Collapses Solvent to Origin Joshua Adelman (Mon Oct 26 2009 - 20:03:37 CDT)
Re: using NAMD with SPC water L. Michel Espinoza-Fonseca (Mon Oct 26 2009 - 10:54:56 CDT)
Re: using NAMD with SPC water Axel Kohlmeyer (Mon Oct 26 2009 - 10:42:13 CDT)
Re: using NAMD with SPC water L. Michel Espinoza-Fonseca (Mon Oct 26 2009 - 10:24:19 CDT)
Re: Loading trajectory into Multiseq John Stone (Mon Oct 26 2009 - 10:22:21 CDT)
Re: using NAMD with SPC water Axel Kohlmeyer (Mon Oct 26 2009 - 10:08:08 CDT)
Re: MDFF sim Problem John Stone (Mon Oct 26 2009 - 10:04:16 CDT)
Re: using NAMD with SPC water L. Michel Espinoza-Fonseca (Mon Oct 26 2009 - 09:40:33 CDT)
Re: using NAMD with SPC water Axel Kohlmeyer (Mon Oct 26 2009 - 08:48:24 CDT)
using NAMD with SPC water politr_at_huji.ac.il (Mon Oct 26 2009 - 07:48:26 CDT)
unparameterized residue sarah k (Sun Oct 25 2009 - 02:24:21 CDT)
Re: MDFF sim Problem Joshua Adelman (Sat Oct 24 2009 - 22:42:12 CDT)
Re: VMD and Intel X3100 GPU Mohd Farid Ismail (Sat Oct 24 2009 - 21:18:49 CDT)
Re: VMD and Intel X3100 GPU Axel Kohlmeyer (Sat Oct 24 2009 - 17:28:33 CDT)
VMD and Intel X3100 GPU Mohd Farid Ismail (Sat Oct 24 2009 - 16:27:38 CDT)
Loading trajectory into Multiseq stephane acoca (Fri Oct 23 2009 - 18:07:02 CDT)
Re: catdcd John Stone (Fri Oct 23 2009 - 13:44:52 CDT)
Re: CatDCD Desmond Support John Stone (Fri Oct 23 2009 - 13:44:15 CDT)
Re: Selections based on "bonded to" John Stone (Fri Oct 23 2009 - 13:39:08 CDT)
Re: Selections based on "bonded to" John Stone (Fri Oct 23 2009 - 11:13:51 CDT)
Re: Bugs ? Representation window does not update new material John Stone (Fri Oct 23 2009 - 11:06:20 CDT)
Re: Bugs ? Representation window does not update new material TRINH Minh Hieu (Fri Oct 23 2009 - 10:52:39 CDT)
Selections based on "bonded to" Schmidt, Mike (Fri Oct 23 2009 - 10:56:00 CDT)
Re: Reading output of quantum packages and plotting orbitals saam (Fri Oct 23 2009 - 10:21:07 CDT)
Re: Bugs ? Representation window does not update new material John Stone (Fri Oct 23 2009 - 09:56:47 CDT)
Re: Problem with vmd and ssh -X John Stone (Fri Oct 23 2009 - 09:52:29 CDT)
Re: Reading output of quantum packages and plotting orbitals John Stone (Fri Oct 23 2009 - 09:49:38 CDT)
Re: Reading output of quantum packages and plotting orbitals Ignacio Fernández Galván (Fri Oct 23 2009 - 09:29:32 CDT)
Bugs ? Representation window does not update new material TRINH Minh Hieu (Fri Oct 23 2009 - 08:57:49 CDT)
Re: Reading output of quantum packages and plotting orbitals saam (Fri Oct 23 2009 - 08:39:32 CDT)
Re: Problem with vmd and ssh -X Thomas Lemmin (Fri Oct 23 2009 - 07:22:28 CDT)
Re: Reading output of quantum packages and plotting orbitals Ignacio Fernández Galván (Fri Oct 23 2009 - 03:29:22 CDT)
Antw: Re: Cuda an a cluster ? Christian Wohlschlager (Fri Oct 23 2009 - 00:20:59 CDT)
Re: Arbitrary values of isosurface John Stone (Thu Oct 22 2009 - 17:10:14 CDT)
Re: Cuda an a cluster ? John Stone (Thu Oct 22 2009 - 11:04:45 CDT)
Re: Problem with vmd and ssh -X John Stone (Thu Oct 22 2009 - 10:58:34 CDT)
Re: Problem with vmd and ssh -X Thomas Lemmin (Thu Oct 22 2009 - 06:39:16 CDT)
Cuda an a cluster ? Christian Wohlschlager (Thu Oct 22 2009 - 02:56:18 CDT)
Problem with vmd and ssh -X Thomas Lemmin (Thu Oct 22 2009 - 02:51:44 CDT)
Re: questions John Stone (Wed Oct 21 2009 - 16:50:06 CDT)
Re: Input File Format Axel Kohlmeyer (Wed Oct 21 2009 - 14:52:05 CDT)
Input File Format Arian Arian (Wed Oct 21 2009 - 14:03:01 CDT)
Re: questions Axel Kohlmeyer (Wed Oct 21 2009 - 13:03:57 CDT)
Re: bond connectivity not displayed in VMD Axel Kohlmeyer (Wed Oct 21 2009 - 12:58:15 CDT)
questions Umesh Ghoshdastider (Wed Oct 21 2009 - 11:56:24 CDT)
bond connectivity not displayed in VMD Elias Ahadi (Wed Oct 21 2009 - 11:36:39 CDT)
Re: Atom sorting according to resid Axel Kohlmeyer (Wed Oct 21 2009 - 11:21:58 CDT)
Atom sorting according to resid andrea carotti (Wed Oct 21 2009 - 10:16:33 CDT)
Re: Direct manipulation of the camera poker_at_physics.usyd.edu.au (Wed Oct 21 2009 - 03:26:59 CDT)
Direct manipulation of the camera poker_at_physics.usyd.edu.au (Wed Oct 21 2009 - 00:21:57 CDT)
Re: X server is not capable of displaying double RGB images with a Z buffer Axel Kohlmeyer (Tue Oct 20 2009 - 10:40:59 CDT)
Re: Translating an atom along a specific direction and saving the pdb files Axel Kohlmeyer (Tue Oct 20 2009 - 10:38:17 CDT)
Re: Translating an atom along a specific direction and saving the pdb files John Stone (Tue Oct 20 2009 - 09:39:48 CDT)
X server is not capable of displaying double RGB images with a Z buffer Ma.Busch (Tue Oct 20 2009 - 04:09:40 CDT)
Translating an atom along a specific direction and saving the pdb files priyodorshi satpati (Tue Oct 20 2009 - 04:08:12 CDT)
glycerol AyÅŸe Ã–zlem Aykut (Tue Oct 20 2009 - 03:13:57 CDT)
Re: MDFF sim Problem John Stone (Mon Oct 19 2009 - 15:27:43 CDT)
Re: NAMD can't malloc() error Axel Kohlmeyer (Mon Oct 19 2009 - 13:29:20 CDT)
NAMD can't malloc() error Ronald Salesky (Mon Oct 19 2009 - 12:44:55 CDT)
Re: paratool: unable to load optimized geometry JC Gumbart (Mon Oct 19 2009 - 12:15:56 CDT)
Re: FW: Disulfide bonds Pavan Ghatty (Mon Oct 19 2009 - 10:55:24 CDT)
Re: Calculate Free Volume? Axel Kohlmeyer (Mon Oct 19 2009 - 08:59:32 CDT)
Re: Arbitrary values of isosurface Axel Kohlmeyer (Mon Oct 19 2009 - 08:58:17 CDT)
Re: paratool: unable to load optimized geometry Axel Kohlmeyer (Mon Oct 19 2009 - 08:51:46 CDT)
Arbitrary values of isosurface aizoon_at_gmx.net (Mon Oct 19 2009 - 06:25:32 CDT)
paratool: unable to load optimized geometry Stanislaw Bobritsky (Mon Oct 19 2009 - 03:21:33 CDT)
Re: MDFF sim Problem Joshua Adelman (Sun Oct 18 2009 - 22:19:28 CDT)
Calculate Free Volume? YingZhe (Sun Oct 18 2009 - 20:07:30 CDT)
Re: Re: Water Sphere Solvation Axel Kohlmeyer (Sun Oct 18 2009 - 09:25:30 CDT)
Re: MDFF sim Problem Leonardo Trabuco (Sat Oct 17 2009 - 15:26:03 CDT)
Re: Align membrane Ale Gomez (Fri Oct 16 2009 - 19:18:41 CDT)
Re: Question about running tcl/tk script without graphic interface (vmd option -dispdev none ...) Axel Kohlmeyer (Fri Oct 16 2009 - 18:25:07 CDT)
Question about running tcl/tk script without graphic interface (vmd option -dispdev none ...) Alberto Sergio Garay (Fri Oct 16 2009 - 17:48:04 CDT)
MDFF sim Problem Joshua Adelman (Fri Oct 16 2009 - 16:20:03 CDT)
Re: Align membrane Ramya Gamini (Fri Oct 16 2009 - 15:02:57 CDT)
Align membrane Ale Gomez (Fri Oct 16 2009 - 13:24:48 CDT)
Re: vmd mailing list Benjamin Bouvier (Fri Oct 16 2009 - 03:46:43 CDT)
vmd mailing list Roman Petrenko (Thu Oct 15 2009 - 17:14:10 CDT)
Re: Representation problem Ahmet Bakan (Thu Oct 15 2009 - 12:16:26 CDT)
Re: Water Sphere Solvation Peter Murphy (Tue Oct 13 2009 - 16:54:45 CDT)
Re: writing gromacs .trr format with nonorthorhomic cells Matt Watkins (Tue Oct 13 2009 - 11:48:27 CDT)
Re: Problems with selecting atoms for representations Axel Kohlmeyer (Tue Oct 13 2009 - 11:29:09 CDT)
Problems with selecting atoms for representations Joseph Bylund (Tue Oct 13 2009 - 10:39:52 CDT)
Re: writing gromacs .trr format with nonorthorhomic cells Axel Kohlmeyer (Tue Oct 13 2009 - 08:59:59 CDT)
writing gromacs .trr format with nonorthorhomic cells Matt Watkins (Tue Oct 13 2009 - 07:05:27 CDT)
RE: Disulfude bonds JC Gumbart (Tue Oct 13 2009 - 01:20:11 CDT)
Re: Disulfude bonds Schreiner Eduard (Tue Oct 13 2009 - 01:12:23 CDT)
RE: Disulfude bonds JC Gumbart (Tue Oct 13 2009 - 01:08:13 CDT)
FW: Disulfide bonds Andres Morales N (Tue Oct 13 2009 - 01:02:30 CDT)
Disulfude bonds Andres Morales N (Tue Oct 13 2009 - 01:00:39 CDT)
Re: colour residues Eric H. Lee (Mon Oct 12 2009 - 21:31:18 CDT)
Re: VMD 1.8.7 CUDA on Mac OS X 10.6.1 Mengjuei Hsieh (Mon Oct 12 2009 - 19:23:08 CDT)
Re: colour residues Axel Kohlmeyer (Mon Oct 12 2009 - 19:05:13 CDT)
Re: colour residues Leonardo Trabuco (Mon Oct 12 2009 - 18:56:31 CDT)
Re: colour residues Eric H. Lee (Mon Oct 12 2009 - 18:26:11 CDT)
colour residues Christine Horejs (Mon Oct 12 2009 - 17:58:31 CDT)
Re: mac tk widgets Nuno Sousa Cerqueira (Mon Oct 12 2009 - 15:58:03 CDT)
Re: mac tk widgets John Stone (Mon Oct 12 2009 - 15:55:19 CDT)
Re: Problem using psfgen and carbohydrate charmm parameters. John Stone (Mon Oct 12 2009 - 15:50:56 CDT)
Re: VMD 1.8.7 CUDA on Mac OS X 10.6.1 John Stone (Mon Oct 12 2009 - 15:36:23 CDT)
Re: covalently bonded atoms Axel Kohlmeyer (Mon Oct 12 2009 - 12:41:31 CDT)
covalently bonded atoms politr_at_huji.ac.il (Mon Oct 12 2009 - 11:11:22 CDT)
Re: catdcd Axel Kohlmeyer (Mon Oct 12 2009 - 10:43:42 CDT)
Re: format of pdb file Axel Kohlmeyer (Mon Oct 12 2009 - 10:10:06 CDT)
Re: catdcd Eric H. Lee (Mon Oct 12 2009 - 10:05:09 CDT)
catdcd Katherine Parra (Mon Oct 12 2009 - 09:59:23 CDT)
format of pdb file Christine Horejs (Mon Oct 12 2009 - 09:04:51 CDT)
Re: Lipid Membrane Axel Kohlmeyer (Mon Oct 12 2009 - 08:39:20 CDT)
Re: Load struture form memory Axel Kohlmeyer (Mon Oct 12 2009 - 08:35:22 CDT)
Load struture form memory Nuno Sousa Cerqueira (Mon Oct 12 2009 - 06:06:47 CDT)
Lipid Membrane Ale Gomez (Sun Oct 11 2009 - 22:58:08 CDT)
Re: Install VMD binary with CUDA, CUDA card detected but then error "no CUDA-capable device is available"--Solved John Stone (Sun Oct 11 2009 - 22:43:17 CDT)
Re: Install VMD binary with CUDA, CUDA card detected but then error "no CUDA-capable device is available"--Solved Jim Parker (Sun Oct 11 2009 - 21:31:05 CDT)
mac tk widgets Nuno Sousa Cerqueira (Sat Oct 10 2009 - 21:13:15 CDT)
VMD 1.8.7 CUDA on Mac OS X 10.6.1 Mengjuei Hsieh (Sat Oct 10 2009 - 18:23:52 CDT)
Re: how to display the periodic box in VMD Olaf Lenz (Fri Oct 09 2009 - 01:49:07 CDT)
Re: How to generate a monolayer in VMD Nilesh Ingle (Thu Oct 08 2009 - 21:58:50 CDT)
Parameter file for protein siloxane interactions Nilesh Ingle (Thu Oct 08 2009 - 21:47:14 CDT)
Problem using psfgen and carbohydrate charmm parameters. Alexandre Suman de Araujo (Thu Oct 08 2009 - 16:19:26 CDT)
RE: how to display the periodic box in VMD Axel Kohlmeyer (Thu Oct 08 2009 - 14:30:27 CDT)
RE: how to display the periodic box in VMD Lan He (Thu Oct 08 2009 - 13:29:10 CDT)
RE: how to display the periodic box in VMD Lan He (Thu Oct 08 2009 - 10:46:37 CDT)
Re: how to display the periodic box in VMD Olaf Lenz (Thu Oct 08 2009 - 02:03:54 CDT)
Re: how to display the periodic box in VMD Axel Kohlmeyer (Wed Oct 07 2009 - 18:39:55 CDT)
how to display the periodic box in VMD Lan He (Wed Oct 07 2009 - 17:51:41 CDT)
Re: CatDCD Desmond Support John Stone (Wed Oct 07 2009 - 13:24:00 CDT)
Re: Bond representation of coarse grained molecules Sunjoo Lee (Wed Oct 07 2009 - 12:17:12 CDT)
Re: Bond representation of coarse grained molecules Axel Kohlmeyer (Wed Oct 07 2009 - 09:39:42 CDT)
CatDCD Desmond Support andrea carotti (Wed Oct 07 2009 - 10:31:53 CDT)
Re: Bond representation of coarse grained molecules Baofu Qiao (Wed Oct 07 2009 - 02:21:14 CDT)
Re: How to generate a monolayer in VMD daniel aguayo (Tue Oct 06 2009 - 13:16:43 CDT)
Re: Tracking atoms automatically Nanako Takahashi (Tue Oct 06 2009 - 13:03:16 CDT)
Re: How to generate a monolayer in VMD Leandro Martínez (Tue Oct 06 2009 - 06:16:24 CDT)
Re: text timer in vmd animations John Stone (Mon Oct 05 2009 - 22:22:10 CDT)
Re: multiseq and fasta files from pdb John Stone (Mon Oct 05 2009 - 21:14:10 CDT)
Re: Reading output of quantum packages and plotting orbitals John Stone (Mon Oct 05 2009 - 21:10:49 CDT)
Re: RE: Problems with Stride John Stone (Mon Oct 05 2009 - 21:08:57 CDT)
Re: How to generate a monolayer in VMD John Stone (Mon Oct 05 2009 - 20:54:03 CDT)
Re: Rx for VMD crashing PC? John Stone (Mon Oct 05 2009 - 20:46:10 CDT)
Re: How to translate my diffused protein back to COM? Axel Kohlmeyer (Mon Oct 05 2009 - 20:31:13 CDT)
Re: How to generate a monolayer in VMD Leandro Martínez (Mon Oct 05 2009 - 19:24:44 CDT)
How to generate a monolayer in VMD Nilesh Ingle (Mon Oct 05 2009 - 18:55:37 CDT)
How to translate my diffused protein back to COM? A D (Mon Oct 05 2009 - 18:20:15 CDT)
Re: Rx for VMD crashing PC? MyLinkka (Mon Oct 05 2009 - 17:40:16 CDT)
Re: Tracking atoms automatically Axel Kohlmeyer (Mon Oct 05 2009 - 13:24:17 CDT)
Tracking atoms automatically Nanako Takahashi (Mon Oct 05 2009 - 11:52:37 CDT)
Re: distance of two center of mass Axel Kohlmeyer (Mon Oct 05 2009 - 06:04:33 CDT)
Re: Breaking a trajectory into separate files with tcl Patrick Redmill (Mon Oct 05 2009 - 05:41:39 CDT)
distance of two center of mass Nicola Giacche' (Mon Oct 05 2009 - 04:36:37 CDT)
Re: Breaking a trajectory into separate files with tcl Axel Kohlmeyer (Mon Oct 05 2009 - 01:41:49 CDT)
Re: Breaking a trajectory into separate files with tcl Schreiner Eduard (Sun Oct 04 2009 - 22:06:21 CDT)
Breaking a trajectory into separate files with tcl Patrick Redmill (Sun Oct 04 2009 - 21:48:27 CDT)
R.E.D.-III.3 tools release - q4md-forcefieldtools.org FyD (Sun Oct 04 2009 - 09:37:06 CDT)
problem with psfgen Q=C5=CC=C1=CC=CF=D7_=E9=CC=D8=D1?= (Sat Oct 03 2009 - 05:35:24 CDT)
RE: Problems with Stride Martin K. Jones (Fri Oct 02 2009 - 17:00:12 CDT)
Re: RE: Problems with Stride John Stone (Fri Oct 02 2009 - 16:24:48 CDT)
Re: Problems with Stride John Stone (Fri Oct 02 2009 - 16:22:26 CDT)
Re: Rx for VMD crashing PC? Ronald Salesky (Fri Oct 02 2009 - 11:42:51 CDT)
RE: Problems with Stride Martin K. Jones (Fri Oct 02 2009 - 13:16:54 CDT)
Re: Problems with Stride Axel Kohlmeyer (Fri Oct 02 2009 - 13:06:45 CDT)
Problems with Stride Martin K. Jones (Fri Oct 02 2009 - 12:18:41 CDT)
Re: Reading output of quantum packages and plotting orbitals Axel Kohlmeyer (Fri Oct 02 2009 - 11:52:09 CDT)
Re: trace cartoon etc displaying incompletely after alignment Yi Shang (Fri Oct 02 2009 - 10:39:21 CDT)
Re: Rx for VMD crashing PC? John Stone (Fri Oct 02 2009 - 10:26:13 CDT)
Re: trace cartoon etc displaying incompletely after alignment mirandaisbest (Fri Oct 02 2009 - 10:18:56 CDT)
Re: Reading output of quantum packages and plotting orbitals Ignacio Fernández Galván (Fri Oct 02 2009 - 03:01:36 CDT)
Rx for VMD crashing PC? Ronald Salesky (Thu Oct 01 2009 - 21:57:00 CDT)
Re: how to load an external file to user field Axel Kohlmeyer (Thu Oct 01 2009 - 16:12:41 CDT)
how to load an external file to user field Sun Yicheng (Thu Oct 01 2009 - 10:28:39 CDT)
multiseq and fasta files from pdb Vlad Cojocaru (Thu Oct 01 2009 - 04:26:01 CDT)
Re: Reading output of quantum packages and plotting orbitals Axel Kohlmeyer (Wed Sep 30 2009 - 17:38:26 CDT)
Reading output of quantum packages and plotting orbitals Ignacio Fernández Galván (Wed Sep 30 2009 - 11:57:35 CDT)
namd2.7b1, tip4p, and dummies Edward Lyman (Wed Sep 30 2009 - 01:36:06 CDT)
trace cartoon etc displaying incompletely after alignment Rahul Mahajan (Tue Sep 29 2009 - 21:23:53 CDT)
Re: Representation problem John Stone (Tue Sep 29 2009 - 17:38:21 CDT)
Re: Representation problem Ahmet Bakan (Tue Sep 29 2009 - 09:42:41 CDT)
Re: Representation problem John Stone (Mon Sep 28 2009 - 16:34:18 CDT)
Representation problem Ahmet Bakan (Mon Sep 28 2009 - 16:22:36 CDT)
Re: model protein chain not displayed properly John Stone (Mon Sep 28 2009 - 15:08:22 CDT)
Re: model protein chain not displayed properly Benjamin Bouvier (Mon Sep 28 2009 - 14:54:09 CDT)
Re: H_Bonds Axel Kohlmeyer (Mon Sep 28 2009 - 14:16:12 CDT)
model protein chain not displayed properly Elias Ahadi (Mon Sep 28 2009 - 13:38:32 CDT)
H_Bonds Katherine Parra (Mon Sep 28 2009 - 12:53:21 CDT)
Re: text timer in vmd animations maria goranovic (Mon Sep 28 2009 - 10:53:04 CDT)
Re: text timer in vmd animations Axel Kohlmeyer (Mon Sep 28 2009 - 10:40:38 CDT)
Re: text timer in vmd animations maria goranovic (Mon Sep 28 2009 - 10:19:41 CDT)
Re: text timer in vmd animations John Stone (Mon Sep 28 2009 - 10:07:31 CDT)
Re: Return value of a vector Stephanie Held (Mon Sep 28 2009 - 09:57:08 CDT)
Re: text timer in vmd animations maria goranovic (Mon Sep 28 2009 - 09:55:02 CDT)
Re: Return value of a vector Axel Kohlmeyer (Mon Sep 28 2009 - 09:35:25 CDT)
Re: text timer in vmd animations Axel Kohlmeyer (Mon Sep 28 2009 - 09:30:19 CDT)
Re: user field Axel Kohlmeyer (Mon Sep 28 2009 - 09:28:03 CDT)
Return value of a vector Stephanie Held (Mon Sep 28 2009 - 08:39:27 CDT)
user field Sun Yicheng (Mon Sep 28 2009 - 08:36:34 CDT)
text timer in vmd animations maria goranovic (Mon Sep 28 2009 - 04:57:16 CDT)
Re: Overlaying 2 structures John Stone (Fri Sep 25 2009 - 22:17:31 CDT)
Re: Paratool: QMTool::bondlist error message John Stone (Fri Sep 25 2009 - 22:09:51 CDT)
Paratool: QMTool::bondlist error message Sebastian Stolzenberg (Fri Sep 25 2009 - 21:53:27 CDT)
Overlaying 2 structures madura_at_duq.edu (Fri Sep 25 2009 - 15:55:05 CDT)
Re: ERROR) Error reading bond information. Axel Kohlmeyer (Fri Sep 25 2009 - 12:16:30 CDT)
Re: ERROR) Error reading bond information. Luca Gelisio (Fri Sep 25 2009 - 11:55:11 CDT)
Re: ERROR) Error reading bond information. John Stone (Fri Sep 25 2009 - 11:03:47 CDT)
Re: "Lines" representation does not show John Stone (Fri Sep 25 2009 - 10:55:46 CDT)
Re: ERROR) Error reading bond information. Axel Kohlmeyer (Fri Sep 25 2009 - 10:02:52 CDT)
Re: ERROR) Error reading bond information. Luca Gelisio (Fri Sep 25 2009 - 09:25:55 CDT)
Re: ERROR) Error reading bond information. Axel Kohlmeyer (Fri Sep 25 2009 - 09:11:49 CDT)
Re: ERROR) Error reading bond information. Luca Gelisio (Fri Sep 25 2009 - 09:10:23 CDT)
Re: "Lines" representation does not show:remote Martin Lepsik (Fri Sep 25 2009 - 09:07:41 CDT)
Re: "Lines" representation does not show Martin Lepsik (Fri Sep 25 2009 - 09:06:46 CDT)
Re: ERROR) Error reading bond information. Luca Gelisio (Fri Sep 25 2009 - 09:03:41 CDT)
Re: ERROR) Error reading bond information. Axel Kohlmeyer (Fri Sep 25 2009 - 07:55:47 CDT)
Re: ERROR) Error reading bond information. John Stone (Fri Sep 25 2009 - 07:41:11 CDT)
ERROR) Error reading bond information. Luca Gelisio (Fri Sep 25 2009 - 05:40:17 CDT)
Re: Frame creation Axel Kohlmeyer (Fri Sep 25 2009 - 05:14:03 CDT)
Re: Velocity Auto Correlation Goutham (Fri Sep 25 2009 - 02:10:04 CDT)
Re: Frame creation Andreas Wagenmann (Fri Sep 25 2009 - 02:01:27 CDT)
Re: problem in reading .nc NETCDF FILE Genform GK (Fri Sep 25 2009 - 00:21:15 CDT)
Re: Velocity Auto Correlation Axel Kohlmeyer (Thu Sep 24 2009 - 21:49:01 CDT)
Re: Velocity Auto Correlation Goutham (Thu Sep 24 2009 - 20:23:39 CDT)
Re: Frame creation Axel Kohlmeyer (Thu Sep 24 2009 - 10:13:16 CDT)
Re: Velocity Auto Correlation Axel Kohlmeyer (Thu Sep 24 2009 - 09:30:33 CDT)
Re: Frame creation John Stone (Thu Sep 24 2009 - 10:02:58 CDT)
Frame creation Andreas Wagenmann (Thu Sep 24 2009 - 09:28:50 CDT)
Re: "Lines" representation does not show John Stone (Thu Sep 24 2009 - 09:08:57 CDT)
Re: problem in reading .nc NETCDF FILE John Stone (Thu Sep 24 2009 - 08:18:59 CDT)
Re: double bonds J. Rui Rodrigues (Thu Sep 24 2009 - 07:22:09 CDT)
Re: "Lines" representation does not show Martin Lepsik (Thu Sep 24 2009 - 05:16:09 CDT)
problem in reading .nc NETCDF FILE Genform GK (Wed Sep 23 2009 - 23:02:10 CDT)
Web-based Flash/Quicktime 3-D VMD/Tachyon renderings of PDB structures John Stone (Wed Sep 23 2009 - 15:45:30 CDT)
list of residue contacts Alison Grinthal (Wed Sep 23 2009 - 15:02:23 CDT)
Re: double bonds John Stone (Wed Sep 23 2009 - 13:17:09 CDT)
double bonds Taufik Al-Sarraj (Wed Sep 23 2009 - 13:13:12 CDT)
double bonds Taufik Al-Sarraj (Wed Sep 23 2009 - 12:22:27 CDT)
trajectory analysis Barry Bickmore (Wed Sep 23 2009 - 11:39:08 CDT)
Re: "Lines" representation does not show John Stone (Wed Sep 23 2009 - 11:03:05 CDT)
"Lines" representation does not show Martin Lep¹ík (Wed Sep 23 2009 - 10:49:33 CDT)
Re: Installing Multiseq updates Jeremias Corradi (Tue Sep 22 2009 - 14:24:43 CDT)
Re: atom selection Axel Kohlmeyer (Mon Sep 21 2009 - 14:22:08 CDT)
Re: atom selection Myunggi Yi (Mon Sep 21 2009 - 14:02:49 CDT)
Re: atom selection Myunggi Yi (Mon Sep 21 2009 - 13:57:29 CDT)
atom selection Myunggi Yi (Mon Sep 21 2009 - 13:45:20 CDT)
Re: Resize window from TCL Axel Kohlmeyer (Mon Sep 21 2009 - 13:08:14 CDT)
[carlos.simmerling@gmail.com: ACS awards application announcements] John Stone (Mon Sep 21 2009 - 12:54:04 CDT)
Re: Resize window from TCL Ondrej Marsalek (Mon Sep 21 2009 - 12:52:02 CDT)
Re: Resize window from TCL John Stone (Mon Sep 21 2009 - 12:48:08 CDT)
Re: Re: automated loading Myunggi Yi (Mon Sep 21 2009 - 11:53:53 CDT)
Resize window from TCL Ondrej Marsalek (Mon Sep 21 2009 - 11:51:46 CDT)
Re: automated loading Axel Kohlmeyer (Mon Sep 21 2009 - 11:18:17 CDT)
Re: Re: automated loading John Stone (Mon Sep 21 2009 - 11:17:21 CDT)
Re: automated loading Myunggi Yi (Mon Sep 21 2009 - 11:01:19 CDT)
automated loading Myunggi Yi (Mon Sep 21 2009 - 10:27:58 CDT)
Re: label options John Stone (Sun Sep 20 2009 - 15:35:25 CDT)
Re: Velocity Auto Correlation Goutham (Sun Sep 20 2009 - 15:23:09 CDT)
Re: problem with density map obtained by volmap Axel Kohlmeyer (Sun Sep 20 2009 - 13:44:03 CDT)
Re: Question about PSF generation Axel Kohlmeyer (Sun Sep 20 2009 - 13:34:12 CDT)
Re: Question about PSF generation Schreiner Eduard (Sun Sep 20 2009 - 12:04:52 CDT)
Re: Question about PSF generation NAMITA BHADRA (Sun Sep 20 2009 - 08:50:18 CDT)
problem with density map obtained by volmap Ana Célia Vila Verde (Sun Sep 20 2009 - 08:01:12 CDT)
Re: Installing Multiseq updates Jeremias Corradi (Sat Sep 19 2009 - 11:10:11 CDT)
Re: Velocity Auto Correlation Axel Kohlmeyer (Sat Sep 19 2009 - 10:14:22 CDT)
Re: water molecules around proteins Axel Kohlmeyer (Sat Sep 19 2009 - 09:55:57 CDT)
Re: water molecules around proteins Thomas Evangelidis (Sat Sep 19 2009 - 09:04:36 CDT)
Re: Velocity Auto Correlation Goutham (Fri Sep 18 2009 - 22:25:02 CDT)
Re: Velocity Auto Correlation Axel Kohlmeyer (Fri Sep 18 2009 - 16:18:44 CDT)
Re: Velocity Auto Correlation Goutham (Fri Sep 18 2009 - 15:52:44 CDT)
Re: Velocity Auto Correlation Axel Kohlmeyer (Fri Sep 18 2009 - 15:36:45 CDT)
Velocity Auto Correlation Goutham (Fri Sep 18 2009 - 14:53:42 CDT)
water molecules around proteins Katherine Parra (Fri Sep 18 2009 - 12:04:04 CDT)
Re: Install VMD binary with CUDA, CUDA card detected but then error "no CUDA-capable device is available" John Stone (Thu Sep 17 2009 - 21:34:36 CDT)
Install VMD binary with CUDA, CUDA card detected but then error "no CUDA-capable device is available" Jim Parker (Thu Sep 17 2009 - 19:33:51 CDT)
Re: Install VMD with plugins to NAMD--solved Jim Parker (Thu Sep 17 2009 - 19:10:07 CDT)
label options Taufik Al-Sarraj (Thu Sep 17 2009 - 13:46:29 CDT)
Re: Reading new amber prmtop formats. John Stone (Thu Sep 17 2009 - 12:50:48 CDT)
Re: Installing Multiseq updates Kirby Vandivort (Thu Sep 17 2009 - 11:54:44 CDT)
Re: Average structure and NamdEnergy John Stone (Thu Sep 17 2009 - 11:35:58 CDT)
Re: Installing Multiseq updates Kirby Vandivort (Thu Sep 17 2009 - 10:44:07 CDT)
Installing Multiseq updates Jeremias Corradi (Thu Sep 17 2009 - 08:42:51 CDT)
Average structure and NamdEnergy Andres Morales N (Thu Sep 17 2009 - 00:03:36 CDT)
Re: Install VMD with plugins to NAMD Jim Parker (Wed Sep 16 2009 - 23:29:11 CDT)
Re: Install VMD with plugins to NAMD John Stone (Wed Sep 16 2009 - 23:02:35 CDT)
Re: Install VMD with plugins to NAMD Jim Parker (Wed Sep 16 2009 - 22:53:24 CDT)
Re: Install VMD with plugins to NAMD John Stone (Wed Sep 16 2009 - 22:04:35 CDT)
Install VMD with plugins to NAMD Jim Parker (Wed Sep 16 2009 - 21:44:31 CDT)
Re: DLP Stereo and VR toolkit integration with vmd Simon Su (Wed Sep 16 2009 - 16:29:22 CDT)
Re: DLP Stereo and VR toolkit integration with vmd John Stone (Wed Sep 16 2009 - 16:10:38 CDT)
Re: Reading new amber prmtop formats. John Stone (Wed Sep 16 2009 - 16:08:07 CDT)
DLP Stereo and VR toolkit integration with vmd Simon Su (Wed Sep 16 2009 - 16:04:25 CDT)
Re: Reading new amber prmtop formats. Thomas C. Bishop (Wed Sep 16 2009 - 15:37:17 CDT)
Average structure and NamdEnergy Andres Morales N (Wed Sep 16 2009 - 14:27:23 CDT)
Re: rotate dihedral angle Sebastian Stolzenberg (Wed Sep 16 2009 - 14:21:00 CDT)
Re: Reading new amber prmtop formats. John Stone (Wed Sep 16 2009 - 13:46:26 CDT)
Re: Reading new amber prmtop formats. Axel Kohlmeyer (Wed Sep 16 2009 - 13:28:37 CDT)
Reading new amber prmtop formats. Crowley, Michael (Wed Sep 16 2009 - 12:21:42 CDT)
Re: segid WT100 is longer than 4 characters allowed by psf format Ramya Gamini (Wed Sep 16 2009 - 08:01:57 CDT)
segid WT100 is longer than 4 characters allowed by psf format Luca Gelisio (Wed Sep 16 2009 - 03:34:16 CDT)
Re: PSF for AMBER top + crd files Axel Kohlmeyer (Tue Sep 15 2009 - 17:10:32 CDT)
Re: PSF for AMBER top + crd files John Stone (Tue Sep 15 2009 - 16:56:34 CDT)
PSF for AMBER top + crd files Goutham (Tue Sep 15 2009 - 16:35:23 CDT)
Re: CGTools error: atom select: cannot parse selection text... Kirby Vandivort (Tue Sep 15 2009 - 11:32:35 CDT)
Re: rotate dihedral angle Peter Freddolino (Mon Sep 14 2009 - 21:32:23 CDT)
Re: Segmentation fault on linux Fedora 11 Axel Kohlmeyer (Mon Sep 14 2009 - 14:45:02 CDT)
Re: CGTools error: atom select: cannot parse selection text... Kirby Vandivort (Mon Sep 14 2009 - 14:16:24 CDT)
Re: VMD and NetCDF under Windows Vista 32bit John Stone (Mon Sep 14 2009 - 14:10:54 CDT)
Re: Segmentation fault on linux Fedora 11 John Stone (Mon Sep 14 2009 - 14:08:35 CDT)
rotate dihedral angle Jorgen Simonsen (Mon Sep 14 2009 - 14:08:21 CDT)
CGTools error: atom select: cannot parse selection text... wuxiao (Mon Sep 14 2009 - 08:48:36 CDT)
Segmentation fault on linux Fedora 11 Rob (Sun Sep 13 2009 - 19:16:28 CDT)
VMD and NetCDF under Windows Vista 32bit Jan F. Totz (Sun Sep 13 2009 - 01:57:02 CDT)
Re: get coordinates Axel Kohlmeyer (Sat Sep 12 2009 - 13:01:35 CDT)
get coordinates Andres Morales N (Sat Sep 12 2009 - 12:05:35 CDT)
Re: VMD on Suse 11.1 w/ NVIDIA dies. Thomas C. Bishop (Thu Sep 10 2009 - 17:44:05 CDT)
Re: VMD on Suse 11.1 w/ NVIDIA dies. John Stone (Thu Sep 10 2009 - 17:24:03 CDT)
Re: VMD on Suse 11.1 w/ NVIDIA dies. Thomas C. Bishop (Thu Sep 10 2009 - 16:53:19 CDT)
Re: John Stone (Thu Sep 10 2009 - 11:10:05 CDT)
Re: Question about PSF generation John Stone (Thu Sep 10 2009 - 11:04:05 CDT)
Re: How to select a hetatom while get rid of N-term ACE in atomselect John Stone (Thu Sep 10 2009 - 10:56:08 CDT)
Re: John Stone (Wed Sep 09 2009 - 14:14:58 CDT)
Re: John Stone (Wed Sep 09 2009 - 14:14:08 CDT)
Re: Roman Petrenko (Wed Sep 09 2009 - 14:09:35 CDT)
Re: catdcd in Windows John Stone (Wed Sep 09 2009 - 13:38:54 CDT)
Re: "measure fit" problem John Stone (Wed Sep 09 2009 - 13:34:18 CDT)
"measure fit" problem Yi Shang (Wed Sep 09 2009 - 13:31:17 CDT)
Re: Mistakes in the 1.8.7 User guide Myunggi Yi (Wed Sep 09 2009 - 13:20:21 CDT)
Re: psf for CNT? Axel Kohlmeyer (Wed Sep 09 2009 - 10:46:49 CDT)
Mistakes in the 1.8.7 User guide Myunggi Yi (Wed Sep 09 2009 - 10:18:40 CDT)
psf for CNT? Ronald Salesky (Wed Sep 09 2009 - 09:55:05 CDT)
Re: VMD on Suse 11.1 w/ NVIDIA dies. Axel Kohlmeyer (Wed Sep 09 2009 - 09:17:55 CDT)
RE: VMD on MacOSX 10.6 Snow Leopard: fast David Poger (Mon Sep 07 2009 - 04:01:48 CDT)
Re: Bond representation of coarse grained molecules Axel Kohlmeyer (Sat Sep 05 2009 - 14:45:59 CDT)
Re: VMD on Suse 11.1 w/ NVIDIA dies. John Stone (Tue Sep 08 2009 - 10:57:12 CDT)
Question about PSF generation NAMITA BHADRA (Tue Sep 08 2009 - 23:01:53 CDT)
catdcd in Windows Wei Chen (Tue Sep 08 2009 - 21:44:25 CDT)
(no subject) Roshan Tasgaonkar (Tue Sep 08 2009 - 20:48:01 CDT)
How to select a hetatom while get rid of N-term ACE in atomselect Sujata Sovani (Tue Sep 08 2009 - 17:47:43 CDT)
Re: VMD on Suse 11.1 w/ NVIDIA dies. Thomas C. Bishop (Tue Sep 08 2009 - 16:55:55 CDT)
Re: VMD on MacOSX 10.6 Snow Leopard: fast John Stone (Mon Sep 07 2009 - 16:31:54 CDT)
Re: VMD on Suse 11.1 w/ NVIDIA dies. Axel Kohlmeyer (Sat Sep 05 2009 - 14:33:34 CDT)
VMD on Suse 11.1 w/ NVIDIA dies. Bishop, Thomas C (Fri Sep 04 2009 - 17:52:35 CDT)
Main menu not compiled? Pieter van 't Hof (Fri Sep 04 2009 - 09:00:56 CDT)
Re: Main menu not compiled? John Stone (Fri Sep 04 2009 - 09:27:33 CDT)
Re: Bond representation of coarse grained molecules John Stone (Fri Sep 04 2009 - 09:49:26 CDT)
RE: namd-l: Re: rmsd matrix Andres Morales N (Thu Sep 03 2009 - 15:00:30 CDT)
rmsd matrix Andres Morales N (Thu Sep 03 2009 - 07:45:06 CDT)
Bond representation of coarse grained molecules BAN,YOUNG MIN (Wed Sep 02 2009 - 16:52:23 CDT)
Re: VMD on MacOSX 10.6 Snow Leopard: fast Christoph Weber (Tue Sep 01 2009 - 13:30:07 CDT)
Re: Script error Axel Kohlmeyer (Tue Sep 01 2009 - 12:55:26 CDT)
Script error Negar Ashari Astani (Tue Sep 01 2009 - 11:58:32 CDT)
Re: VMD on MacOSX 10.6 Snow Leopard: fast Joshua D. Moore (Mon Aug 31 2009 - 22:20:51 CDT)
Re: CG bead definition Anton Arkhipov (Mon Aug 31 2009 - 23:24:05 CDT)
VMD on MacOSX 10.6 Snow Leopard: fast Christoph Weber (Mon Aug 31 2009 - 18:31:11 CDT)
Re: 3D pdf problem Michael K. Gilson (Mon Aug 31 2009 - 16:22:55 CDT)
Re: 3D pdf problem John Stone (Mon Aug 31 2009 - 14:50:33 CDT)
Re: VMD, MultiSeq, STAMP John Stone (Mon Aug 31 2009 - 14:37:44 CDT)
Re: 3D pdf problem Michael K. Gilson (Mon Aug 31 2009 - 14:36:49 CDT)
Re: VMD, MultiSeq, STAMP Kirby Vandivort (Mon Aug 31 2009 - 14:25:30 CDT)
Re: 3D pdf problem John Stone (Mon Aug 31 2009 - 11:51:01 CDT)
Re: superimpose two proteins with different residue numbers John Stone (Mon Aug 31 2009 - 11:34:03 CDT)
3D pdf problem Michael K. Gilson (Mon Aug 31 2009 - 06:24:06 CDT)
superimpose two proteins with different residue numbers Soumya Lipsa Rath (Mon Aug 31 2009 - 02:55:13 CDT)
VMD, MultiSeq, STAMP Damian Loska (Sun Aug 30 2009 - 11:42:14 CDT)
Re: tinkerxyz Joshua D. Moore (Sat Aug 29 2009 - 02:26:29 CDT)
Re: User field Axel Kohlmeyer (Fri Aug 28 2009 - 16:14:00 CDT)
Re: viewing MOs saam (Fri Aug 28 2009 - 15:37:59 CDT)
User field Urahata (Fri Aug 28 2009 - 10:40:43 CDT)
Re: viewing MOs Axel Kohlmeyer (Fri Aug 28 2009 - 10:29:57 CDT)
Re: Bond in pbc condition John Stone (Fri Aug 28 2009 - 10:22:06 CDT)
Re: viewing MOs John Stone (Fri Aug 28 2009 - 09:55:37 CDT)
viewing MOs Dan thomas Major (Fri Aug 28 2009 - 09:47:34 CDT)
Re: Bond in pbc condition Olaf Lenz (Fri Aug 28 2009 - 04:06:39 CDT)
Re: drawing waterbox BIN ZHANG (Thu Aug 27 2009 - 11:02:46 CDT)
Re: drawing waterbox John Stone (Thu Aug 27 2009 - 10:29:08 CDT)
Re: drawing waterbox Narender Singh Maan (Thu Aug 27 2009 - 10:14:58 CDT)
Re: superimposing proteins with non-similar coordinates Christopher MacDermaid (Wed Aug 26 2009 - 17:17:34 CDT)
Re: superimposing proteins with non-similar coordinates Schreiner Eduard (Wed Aug 26 2009 - 16:33:39 CDT)
Re: superimposing proteins with non-similar coordinates John Stone (Wed Aug 26 2009 - 16:31:46 CDT)
superimposing proteins with non-similar coordinates Mark M Huntress (Wed Aug 26 2009 - 16:17:41 CDT)
Re: rotating ligand Schreiner Eduard (Wed Aug 26 2009 - 15:07:49 CDT)
rotating ligand Steve Seibold (Wed Aug 26 2009 - 14:58:19 CDT)
Re: drawing waterbox John Stone (Wed Aug 26 2009 - 13:29:10 CDT)
drawing waterbox Narender Singh Maan (Wed Aug 26 2009 - 09:35:56 CDT)
Re: selection for polar hydrogens only poker_at_physics.usyd.edu.au (Wed Aug 26 2009 - 02:05:44 CDT)
Bond in pbc condition Yew Yong Kin (Wed Aug 26 2009 - 01:46:27 CDT)
Re: selection for polar hydrogens only Schreiner Eduard (Tue Aug 25 2009 - 22:50:43 CDT)
selection for polar hydrogens only poker_at_physics.usyd.edu.au (Tue Aug 25 2009 - 22:13:26 CDT)
Re: tinkerxyz Axel Kohlmeyer (Tue Aug 25 2009 - 21:21:28 CDT)
Re: tinkerxyz Urahata (Tue Aug 25 2009 - 20:58:41 CDT)
tinkerxyz Mark M Huntress (Tue Aug 25 2009 - 19:21:48 CDT)
Re: using VMD 1.8.7 on a Mac daniel aguayo (Tue Aug 25 2009 - 12:53:02 CDT)
Re: using VMD 1.8.7 on a Mac Robert Brunner (Tue Aug 25 2009 - 12:00:11 CDT)
Re: using VMD 1.8.7 on a Mac John Stone (Tue Aug 25 2009 - 10:34:02 CDT)
Re: problem with 1.8.7 installation Axel Kohlmeyer (Tue Aug 25 2009 - 06:43:51 CDT)
problem with 1.8.7 installation Barbault Florent (Tue Aug 25 2009 - 04:50:41 CDT)
Re: using VMD 1.8.7 on a Mac Joshua D. Moore (Mon Aug 24 2009 - 21:49:10 CDT)
Re: using VMD 1.8.7 on a Mac Carolyn Phillips (Mon Aug 24 2009 - 18:24:36 CDT)
Re: Mac and cmd line Jorgen Simonsen (Mon Aug 24 2009 - 17:50:49 CDT)
Re: Mac and cmd line JT (Mon Aug 24 2009 - 17:27:44 CDT)
Re: Mac and cmd line Ben Eisenbraun (Mon Aug 24 2009 - 15:50:58 CDT)
Re: using VMD 1.8.7 on a Mac John Stone (Mon Aug 24 2009 - 15:42:49 CDT)
Re: Mac and cmd line Robert Brunner (Mon Aug 24 2009 - 15:02:20 CDT)
Mac and cmd line Jorgen Simonsen (Mon Aug 24 2009 - 11:58:16 CDT)
Re: using VMD 1.8.7 on a Mac Carolyn Phillips (Mon Aug 24 2009 - 11:33:04 CDT)
Re: Moving Molecule BIN ZHANG (Mon Aug 24 2009 - 11:21:41 CDT)
Moving Molecule Steve Seibold (Mon Aug 24 2009 - 10:37:42 CDT)
Re: using VMD 1.8.7 on a Mac John Stone (Sun Aug 23 2009 - 21:32:18 CDT)
using VMD 1.8.7 on a Mac Carolyn Phillips (Sun Aug 23 2009 - 15:13:40 CDT)
Re: VMD: 1.8.7 win32 opengl runtime error John Stone (Fri Aug 21 2009 - 21:58:25 CDT)
Re: VMD: 1.8.7 win32 opengl runtime error Guanglei Cui (Fri Aug 21 2009 - 21:48:43 CDT)
Re: NAMD tutorial for Windows problem reading pgn file from vmd tkconsole Eric H. Lee (Fri Aug 21 2009 - 17:13:21 CDT)
Re: NAMD tutorial for Windows problem reading pgn file from vmd tkconsole Eric H. Lee (Fri Aug 21 2009 - 16:40:52 CDT)
Re: NAMD tutorial for Windows problem reading pgn file from vmd tkconsole John Stone (Fri Aug 21 2009 - 16:30:30 CDT)
NAMD tutorial for Windows problem reading pgn file from vmd tkconsole Carmen Valladares (Fri Aug 21 2009 - 16:26:04 CDT)
Re: VMD: 1.8.7 win32 opengl runtime error John Stone (Fri Aug 21 2009 - 09:56:33 CDT)
VMD: 1.8.7 win32 opengl runtime error Guanglei Cui (Fri Aug 21 2009 - 09:14:56 CDT)
Re: Color bar Axel Kohlmeyer (Thu Aug 20 2009 - 17:28:26 CDT)
Force extension from SMD log file snoze pa (Thu Aug 20 2009 - 17:25:20 CDT)
Color bar Iman Salehinia (Thu Aug 20 2009 - 16:46:36 CDT)
Re: Pyhton Mode Axel Kohlmeyer (Thu Aug 20 2009 - 08:10:51 CDT)
Pyhton Mode Peyman Yamin (Thu Aug 20 2009 - 04:49:33 CDT)
Mutator: Losing Chromophore Carmen Valladares (Wed Aug 19 2009 - 19:14:57 CDT)
Re: Render command not executed Nicolas SAPAY (Wed Aug 19 2009 - 04:59:45 CDT)
Re: Render command not executed Axel Kohlmeyer (Wed Aug 19 2009 - 04:30:36 CDT)
Render command not executed Nicolas SAPAY (Wed Aug 19 2009 - 02:22:18 CDT)
VMD Tracking VRPN Christian Wohlschlager (Wed Aug 19 2009 - 02:01:49 CDT)
Re: Rendering polyhedra with POV-Ray Nicolas Sapay (Tue Aug 18 2009 - 11:11:35 CDT)
Re: Rendering polyhedra with POV-Ray John Stone (Tue Aug 18 2009 - 10:59:37 CDT)
Re: Rendering polyhedra with POV-Ray Nicolas Sapay (Tue Aug 18 2009 - 10:54:44 CDT)
Re: Rendering polyhedra with POV-Ray John Stone (Tue Aug 18 2009 - 10:23:05 CDT)
Rendering polyhedra with POV-Ray Nicolas SAPAY (Tue Aug 18 2009 - 09:53:10 CDT)
Re: Antw: Re: CUDA Support John Stone (Tue Aug 18 2009 - 01:18:10 CDT)
Antw: Re: CUDA Support Christian Wohlschlager (Tue Aug 18 2009 - 01:06:27 CDT)
Re: Cionize on mac cuda daniel aguayo (Mon Aug 17 2009 - 19:28:30 CDT)
Re: Cionize on mac cuda John Stone (Mon Aug 17 2009 - 13:49:09 CDT)
RE: Periodic Bonding Bishop, Thomas C (Thu Aug 13 2009 - 14:46:24 CDT)
Re: can we control the number and distribution of solvate molecular John Stone (Wed Aug 12 2009 - 16:14:30 CDT)
Re: positioning of a compound Esteban Gabriel Vega Hissi (Wed Aug 12 2009 - 16:07:37 CDT)
RE: positioning of a compound Steve Seibold (Wed Aug 12 2009 - 15:11:00 CDT)
Re: positioning of a compound jen hsin (Wed Aug 12 2009 - 15:02:15 CDT)
Re: positioning of a compound John Stone (Wed Aug 12 2009 - 14:59:04 CDT)
positioning of a compound Steve Seibold (Wed Aug 12 2009 - 14:48:23 CDT)
Re: Periodic Bonding Olaf Lenz (Wed Aug 12 2009 - 10:56:53 CDT)
Re: Turn off the autobond feature in VMD John Stone (Wed Aug 12 2009 - 09:58:01 CDT)
Re: Periodic Bonding Axel Kohlmeyer (Wed Aug 12 2009 - 09:42:00 CDT)
Re: Turn off the autobond feature in VMD Axel Kohlmeyer (Wed Aug 12 2009 - 09:40:08 CDT)
Re: VMD Periodic cells Olaf Lenz (Wed Aug 12 2009 - 09:06:01 CDT)
Periodic Bonding Liang, Linus H. (Wed Aug 12 2009 - 08:44:19 CDT)
Re: VMD Periodic cells Olaf Lenz (Wed Aug 12 2009 - 08:43:09 CDT)
Turn off the autobond feature in VMD Liang, Linus H. (Wed Aug 12 2009 - 08:27:55 CDT)
Re: CUDA Support John Stone (Wed Aug 12 2009 - 07:55:30 CDT)
VMD Periodic cells Florentina Tofoleanu (Wed Aug 12 2009 - 07:03:53 CDT)
CUDA Support Christian Wohlschlager (Wed Aug 12 2009 - 03:09:35 CDT)
Re: Cionize on mac cuda daniel aguayo (Tue Aug 11 2009 - 13:16:04 CDT)
Re: namd-l: how to write a command to close vmd in shell script? Benjamin Bouvier (Mon Aug 10 2009 - 03:07:38 CDT)
Re: HRTEM John Stone (Fri Aug 07 2009 - 12:22:53 CDT)
HRTEM Joshua D. Moore (Fri Aug 07 2009 - 02:20:45 CDT)
Re: How to compile the source of VMD1.8.7 on linux system John Stone (Fri Aug 07 2009 - 00:24:09 CDT)
How to compile the source of VMD1.8.7 on linux system Aurum Bai (Fri Aug 07 2009 - 00:10:40 CDT)
Re: Cionize on mac cuda John Stone (Thu Aug 06 2009 - 14:48:09 CDT)
Re: clusters visualization with colours John Stone (Thu Aug 06 2009 - 11:11:17 CDT)
Re: NEW New John Stone (Thu Aug 06 2009 - 10:31:36 CDT)
NEW New Christian Wohlschlager (Thu Aug 06 2009 - 07:44:37 CDT)
clusters visualization with colours Stefano Meliga (Thu Aug 06 2009 - 04:43:05 CDT)
Re: Cionize on mac cuda daniel aguayo (Wed Aug 05 2009 - 20:46:10 CDT)
Re: Cionize on mac cuda John Stone (Wed Aug 05 2009 - 20:43:04 CDT)
Cionize on mac cuda daniel aguayo (Wed Aug 05 2009 - 20:29:07 CDT)
Announce: VMD 1.8.7 released John Stone (Mon Aug 03 2009 - 14:21:59 CDT)
"mol scaleminmax auto" vs. "mol scaleminmax $min_val $max_val" Nadja Lederer (Mon Aug 03 2009 - 06:21:42 CDT)
Re: Why the win_version of vmd1.86 can not change to python interpreter? Axel Kohlmeyer (Sat Aug 01 2009 - 09:30:12 CDT)
Why the win_version of vmd1.86 can not change to python interpreter? Aurum Bai (Sat Aug 01 2009 - 08:21:06 CDT)
Re: visualization problem John Stone (Fri Jul 31 2009 - 10:41:30 CDT)
Re: vmd Linux 64 Axel Kohlmeyer (Fri Jul 31 2009 - 07:50:20 CDT)
Re: visualization problem Axel Kohlmeyer (Fri Jul 31 2009 - 07:44:29 CDT)
vmd Linux 64 Christian Wohlschlager (Fri Jul 31 2009 - 03:29:04 CDT)
visualization problem Srikanth Dhondi (Thu Jul 30 2009 - 21:58:27 CDT)
Building polymer psf from monomer topology Alexandre Suman de Araujo (Thu Jul 30 2009 - 14:48:13 CDT)
NAMDEnergy Plugin Andres Morales N (Tue Jul 28 2009 - 00:34:43 CDT)
Re: File to benchmark a new GPU system John Stone (Mon Jul 27 2009 - 16:39:45 CDT)
Re: removed all proton in protein with vmd Nicolas SAPAY (Mon Jul 27 2009 - 03:36:38 CDT)
removed all proton in protein with vmd albert albert (Mon Jul 27 2009 - 01:40:34 CDT)
Re: Stripping out H20 Axel Kohlmeyer (Sun Jul 26 2009 - 20:09:45 CDT)
Re: File to benchmark a new GPU system Axel Kohlmeyer (Sun Jul 26 2009 - 20:07:37 CDT)
Re: PDB COORDINATES Axel Kohlmeyer (Sun Jul 26 2009 - 19:59:55 CDT)
PDB COORDINATES Edward P. Manning (Sun Jul 26 2009 - 19:08:28 CDT)
Re: File to benchmark a new GPU system luc Renambot (Sun Jul 26 2009 - 18:52:30 CDT)
Re: Stripping out H20 Axel Kohlmeyer (Sun Jul 26 2009 - 18:47:33 CDT)
Stripping out H20 Jehanzeb Hameed (Sun Jul 26 2009 - 18:24:33 CDT)
Re: File to benchmark a new GPU system Axel Kohlmeyer (Sun Jul 26 2009 - 18:22:59 CDT)
File to benchmark a new GPU system luc Renambot (Sun Jul 26 2009 - 16:20:28 CDT)
Re: time-averaged RMSD per residue Roman Petrenko (Sun Jul 26 2009 - 05:39:19 CDT)
Re: Disable the set output Leonardo Trabuco (Sat Jul 25 2009 - 10:54:53 CDT)
order parameter from trajectory Roman Petrenko (Fri Jul 24 2009 - 17:08:50 CDT)
Re: Problem: VMD 1.8.7 beta 5 does not launch on AIX Stanislav Polonsky (Fri Jul 24 2009 - 13:24:45 CDT)
Re: time-averaged RMSD per residue Roman Petrenko (Fri Jul 24 2009 - 11:15:02 CDT)
Lovyeou gumbart_at_ks.uiuc.edu (Fri Jul 24 2009 - 09:31:56 CDT)
Re: Problem: VMD 1.8.7 beta 5 does not launch on AIX Axel Kohlmeyer (Fri Jul 24 2009 - 09:22:09 CDT)
Re: time-averaged RMSD per residue Axel Kohlmeyer (Fri Jul 24 2009 - 09:19:52 CDT)
Re: question about atomselect and periodic condition Axel Kohlmeyer (Fri Jul 24 2009 - 09:17:13 CDT)
Re: time-averaged RMSD per residue Roman Petrenko (Fri Jul 24 2009 - 09:00:08 CDT)
Problem: VMD 1.8.7 beta 5 does not launch on AIX Stanislav Polonsky (Fri Jul 24 2009 - 08:46:05 CDT)
time-averaged RMSD per residue Dawn (Fri Jul 24 2009 - 08:06:08 CDT)
question about atomselect and periodic condition Linchen Gong (Fri Jul 24 2009 - 05:44:41 CDT)
Hydrogen Bonding energy Goutham (Thu Jul 23 2009 - 20:56:52 CDT)
Loevyou gumbart_at_ks.uiuc.edu (Thu Jul 23 2009 - 16:55:17 CDT)
Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer Stanislav Polonsky (Thu Jul 23 2009 - 16:42:37 CDT)
stereo anaglyph Roman Petrenko (Thu Jul 23 2009 - 16:16:07 CDT)
RE: TkConsole not working Ziemys, Arturas (Thu Jul 23 2009 - 14:56:57 CDT)
Re: TkConsole not working John Stone (Thu Jul 23 2009 - 14:52:24 CDT)
TkConsole not working Ziemys, Arturas (Thu Jul 23 2009 - 14:45:20 CDT)
Re: drawing bond for coarse grained model Axel Kohlmeyer (Thu Jul 23 2009 - 14:06:53 CDT)
drawing bond for coarse grained model Sunjoo Lee (Thu Jul 23 2009 - 13:25:46 CDT)
Re: Save State Fails Andrew Dalke (Thu Jul 23 2009 - 13:11:46 CDT)
Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer John Stone (Thu Jul 23 2009 - 12:49:24 CDT)
Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer Axel Kohlmeyer (Thu Jul 23 2009 - 12:29:49 CDT)
Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer Stanislav Polonsky (Thu Jul 23 2009 - 12:21:14 CDT)
Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer Axel Kohlmeyer (Thu Jul 23 2009 - 11:23:34 CDT)
Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer Stanislav Polonsky (Thu Jul 23 2009 - 10:39:36 CDT)
Re: Disable the set output Thomas C. Bishop (Thu Jul 23 2009 - 09:52:15 CDT)
Re: Disable the set output Nicolas Sapay (Thu Jul 23 2009 - 09:28:13 CDT)
Re: Re: could not visualize DCD file downloaded from VMD website Thomas C. Bishop (Thu Jul 23 2009 - 09:21:20 CDT)
Re: Disable the set output Axel Kohlmeyer (Thu Jul 23 2009 - 07:45:34 CDT)
Disable the set output Nicolas SAPAY (Thu Jul 23 2009 - 05:15:24 CDT)
Re: Save State Fails Leonardo Trabuco (Wed Jul 22 2009 - 00:52:57 CDT)
Re: insert a protein into a membrane Leonardo Trabuco (Tue Jul 21 2009 - 21:17:29 CDT)
Save State Fails Carmen Valladares (Tue Jul 21 2009 - 18:57:00 CDT)
Re: could not visualize DCD file downloaded from VMD website Yi Shang (Tue Jul 21 2009 - 15:24:30 CDT)
Re: could not visualize DCD file downloaded from VMD website Yi Shang (Tue Jul 21 2009 - 15:05:51 CDT)
could not visualize DCD file downloaded from VMD website Yi Shang (Tue Jul 21 2009 - 14:59:04 CDT)
insert a protein into a membrane Lixia Jin Day (Tue Jul 21 2009 - 13:41:21 CDT)
RE: VMD on laptop with ATI Radeon 3650 Mark Cunningham (Tue Jul 21 2009 - 10:00:33 CDT)
of diet pills, like a racing heart or queasy stomach ltrabuco_at_ks.uiuc.edu (Tue Jul 21 2009 - 09:47:48 CDT)
Re: error using Molecule.save() (vmd python) Axel Kohlmeyer (Tue Jul 21 2009 - 08:43:21 CDT)
error using Molecule.save() (vmd python) Michael Kreim (Tue Jul 21 2009 - 06:49:44 CDT)
Re: need convert when using VMD to make a movie under Mac John Stone (Tue Jul 21 2009 - 01:13:44 CDT)
Re: IMD interface for VASP Axel Kohlmeyer (Mon Jul 20 2009 - 19:03:45 CDT)
Re: need convert when using VMD to make a movie under Mac Eric H. Lee (Mon Jul 20 2009 - 18:34:53 CDT)
IMD interface for VASP Michael Robbert (Mon Jul 20 2009 - 17:54:36 CDT)
need convert when using VMD to make a movie under Mac Yongmei Pan (Mon Jul 20 2009 - 17:49:29 CDT)
Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer Stanislav Polonsky (Mon Jul 20 2009 - 16:19:05 CDT)
Re: VMD on laptop with ATI Radeon 3650 John Stone (Mon Jul 20 2009 - 16:09:18 CDT)
VMD on laptop with ATI Radeon 3650 Ramon Rocha (Mon Jul 20 2009 - 16:00:40 CDT)
Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer Axel Kohlmeyer (Mon Jul 20 2009 - 15:43:56 CDT)
Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer Stanislav Polonsky (Mon Jul 20 2009 - 13:16:31 CDT)
Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer John Stone (Mon Jul 20 2009 - 11:43:38 CDT)
Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer Stanislav Polonsky (Mon Jul 20 2009 - 11:40:40 CDT)
Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer Axel Kohlmeyer (Mon Jul 20 2009 - 11:36:28 CDT)
Re: Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer John Stone (Mon Jul 20 2009 - 11:29:20 CDT)
Problem: volumetric data coloring fails on AIX5_64 with GXT6500 OpenGL renderer Stanislav Polonsky (Mon Jul 20 2009 - 11:04:25 CDT)
Re: File conversion for from Amber to Charmm Axel Kohlmeyer (Mon Jul 20 2009 - 08:54:41 CDT)
Re: Re PSF file generation Axel Kohlmeyer (Mon Jul 20 2009 - 08:49:33 CDT)
Re: VMD 1.8.7 installation problem Axel Kohlmeyer (Mon Jul 20 2009 - 08:49:00 CDT)
Re PSF file generation karthigeyan karthigeyantp (Mon Jul 20 2009 - 07:34:51 CDT)
Re: File conversion for from Amber to Charmm Yogesh Aher (Mon Jul 20 2009 - 07:22:21 CDT)
VMD 1.8.7 installation problem Ajeeta kaushiki (Mon Jul 20 2009 - 06:55:41 CDT)
Re: Problem With Psfgen again Axel Kohlmeyer (Fri Jul 17 2009 - 14:37:13 CDT)
Problem With Psfgen again avl211_at_lehigh.edu (Fri Jul 17 2009 - 13:53:49 CDT)
Re: File conversion for from Amber to Charmm Axel Kohlmeyer (Fri Jul 17 2009 - 10:14:24 CDT)
Re: error after changing of PYTHONPATH variable Axel Kohlmeyer (Fri Jul 17 2009 - 09:16:22 CDT)
Re: error after changing of PYTHONPATH variable Michael Kreim (Fri Jul 17 2009 - 08:51:46 CDT)
Re: error after changing of PYTHONPATH variable Axel Kohlmeyer (Fri Jul 17 2009 - 08:22:13 CDT)
Re: File conversion for from Amber to Charmm Axel Kohlmeyer (Fri Jul 17 2009 - 07:23:35 CDT)
error after changing of PYTHONPATH variable Michael Kreim (Fri Jul 17 2009 - 07:12:52 CDT)
File conversion for from Amber to Charmm Yogesh Aher (Fri Jul 17 2009 - 04:34:55 CDT)
Re: algorithm for command *within* Thomas Evangelidis (Fri Jul 17 2009 - 03:30:45 CDT)
Re: Problems with psfgen Axel Kohlmeyer (Thu Jul 16 2009 - 17:30:59 CDT)
Problems with psfgen avl211_at_lehigh.edu (Thu Jul 16 2009 - 16:06:31 CDT)
Re: A problem on PBC Axel Kohlmeyer (Thu Jul 16 2009 - 11:56:57 CDT)
Re: make movie w/ VMD in SUSE environment Axel Kohlmeyer (Thu Jul 16 2009 - 11:40:03 CDT)
Re: algorithm for command *within* John Stone (Thu Jul 16 2009 - 11:32:50 CDT)
algorithm for command *within* BIN ZHANG (Thu Jul 16 2009 - 11:29:43 CDT)
Re: make movie w/ VMD in SUSE environment John Stone (Thu Jul 16 2009 - 11:27:08 CDT)
Re: make movie w/ VMD in SUSE environment Thomas C. Bishop (Thu Jul 16 2009 - 11:14:15 CDT)
Re: make movie w/ VMD in SUSE environment John Stone (Thu Jul 16 2009 - 11:00:29 CDT)
make movie w/ VMD in SUSE environment Thomas C. Bishop (Thu Jul 16 2009 - 10:55:57 CDT)
Re: ied and gypython Axel Kohlmeyer (Thu Jul 16 2009 - 09:22:39 CDT)
Re: getting other variables out of LAMMPS ascii dump files Dan Lussier (Thu Jul 16 2009 - 04:46:03 CDT)
ied and gypython gurunath katagi (Thu Jul 16 2009 - 02:16:21 CDT)
A problem on PBC yzliu (Thu Jul 16 2009 - 02:06:34 CDT)
Re: .xst file disagrees with pbctools/.dcd file - what are the limitations of pbctools? Olaf Lenz (Thu Jul 16 2009 - 01:14:37 CDT)
Re: HETATM records are written as ATOM Leonardo Trabuco (Wed Jul 15 2009 - 17:32:07 CDT)
HETATM records are written as ATOM Thomas Evangelidis (Wed Jul 15 2009 - 16:58:27 CDT)
Natural WeightL0SS Solution ltrabuco_at_ks.uiuc.edu (Wed Jul 15 2009 - 17:35:35 CDT)
Re: A problem on SASA measure John Stone (Wed Jul 15 2009 - 16:03:25 CDT)
Re: Can I build a structure by VMD? John Stone (Wed Jul 15 2009 - 14:36:56 CDT)
Re: .xst file disagrees with pbctools/.dcd file - what are the limitations of pbctools? John Stone (Wed Jul 15 2009 - 14:32:57 CDT)
Can I build a structure by VMD? Lixia Jin Day (Wed Jul 15 2009 - 14:29:01 CDT)
Re: VMD and X forwarding to MacOS 10.5.7 John Stone (Wed Jul 15 2009 - 13:48:13 CDT)
Re: python and vmd Axel Kohlmeyer (Wed Jul 15 2009 - 07:46:20 CDT)
.xst file disagrees with pbctools/.dcd file - what are the limitations of pbctools? Patrick Kiley (Wed Jul 15 2009 - 05:05:01 CDT)
python and vmd Jorgen Simonsen (Wed Jul 15 2009 - 04:23:12 CDT)
Re: getting other variables out of LAMMPS ascii dump files Axel Kohlmeyer (Tue Jul 14 2009 - 18:00:35 CDT)
Re: getting other variables out of LAMMPS ascii dump files Dan Lussier (Tue Jul 14 2009 - 17:31:57 CDT)
Re: scan interleaved stereo on Zalman M220W monitor John Stone (Tue Jul 14 2009 - 13:25:50 CDT)
scan interleaved stereo on Zalman M220W monitor Sinan Arslan (Tue Jul 14 2009 - 13:11:39 CDT)
Re: namd-l: molecule jumps from one site to the other? Eric H. Lee (Mon Jul 13 2009 - 21:33:42 CDT)
molecule jumps from one site to the other? uu zhu (Mon Jul 13 2009 - 21:11:52 CDT)
Re: getting other variables out of LAMMPS ascii dump files Axel Kohlmeyer (Mon Jul 13 2009 - 14:21:03 CDT)
getting other variables out of LAMMPS ascii dump files Dan Lussier (Mon Jul 13 2009 - 13:44:23 CDT)
Be someone whom you have never been before with DrMaxMan ltrabuco_at_ks.uiuc.edu (Mon Jul 13 2009 - 10:30:41 CDT)
Re: Need Guidance with pbctools Angelo Rossi (Sun Jul 12 2009 - 08:02:21 CDT)
Problem: I got a runtime error "CthCreate failed to create fiber!". Chuck (Sun Jul 12 2009 - 03:49:44 CDT)
Re: Need Guidance with pbctools Olaf Lenz (Sun Jul 12 2009 - 03:00:58 CDT)
Need Guidance with pbctools Angelo Rossi (Sat Jul 11 2009 - 13:47:11 CDT)
Re: measure rmsf John Stone (Fri Jul 10 2009 - 13:31:54 CDT)
Re: measure rmsf Alison Grinthal (Fri Jul 10 2009 - 13:10:14 CDT)
Re: residue based CG model Anton Arkhipov (Fri Jul 10 2009 - 10:47:00 CDT)
Re: measure rmsf John Stone (Fri Jul 10 2009 - 10:42:33 CDT)
residue based CG model Xiang Yu (Fri Jul 10 2009 - 09:20:42 CDT)
measure rmsf Alison Grinthal (Fri Jul 10 2009 - 08:31:26 CDT)
A problem on SASA measure yzliu (Fri Jul 10 2009 - 08:12:23 CDT)
Re: NAMD setup for organic compounds Sasha Buzko (Thu Jul 09 2009 - 19:17:09 CDT)
Re: NAMD setup for organic compounds Peter Freddolino (Thu Jul 09 2009 - 19:07:56 CDT)
Need GAMESS logfiles for testing VMD's new QM interface saam (Thu Jul 09 2009 - 11:58:08 CDT)
NAMD setup for organic compounds Sasha Buzko (Thu Jul 09 2009 - 11:46:48 CDT)
Re: How to make a selection in atomselect using an element in a list? Axel Kohlmeyer (Wed Jul 08 2009 - 11:17:14 CDT)
How to make a selection in atomselect using an element in a list? maria goranovic (Wed Jul 08 2009 - 10:39:39 CDT)
Re: GPL compatible PluginMgr/vmddlopen Roland Schulz (Wed Jul 08 2009 - 09:56:08 CDT)
re: LES problem Irene Newhouse (Tue Jul 07 2009 - 00:28:21 CDT)
LES problem Irene Newhouse (Tue Jul 07 2009 - 00:25:20 CDT)
Re: GPL compatible PluginMgr/vmddlopen John Stone (Mon Jul 06 2009 - 21:45:27 CDT)
Re: namd-l: Re: Hardware for NAMD / VMD machine Axel Kohlmeyer (Mon Jul 06 2009 - 16:46:40 CDT)
Re: Hardware for NAMD / VMD machine Olve Peersen (Mon Jul 06 2009 - 13:39:53 CDT)
Re: Hardware for NAMD / VMD machine John Stone (Mon Jul 06 2009 - 11:04:30 CDT)
Re: Curious about analytical capabilities of VMD Bjoern Olausson (Mon Jul 06 2009 - 07:10:37 CDT)
Re: NAMDenergy: problems on changing VMD version/platform Neelanjana Sengupta (Mon Jul 06 2009 - 05:17:30 CDT)
Re: GPL compatible PluginMgr/vmddlopen Roland Schulz (Mon Jul 06 2009 - 04:19:52 CDT)
Re: GPL compatible PluginMgr/vmddlopen John Stone (Sun Jul 05 2009 - 20:14:35 CDT)
Re: NAMDenergy: problems on changing VMD version/platform Axel Kohlmeyer (Sun Jul 05 2009 - 13:58:50 CDT)
Make sure girls notice your package petefred_at_ks.uiuc.edu (Sat Jul 04 2009 - 22:12:43 CDT)
Re: NAMDenergy: problems on changing VMD version/platform Axel Kohlmeyer (Sat Jul 04 2009 - 11:54:50 CDT)
NAMDenergy: problems on changing VMD version/platform Neelanjana Sengupta (Sat Jul 04 2009 - 11:17:44 CDT)
GPL compatible PluginMgr/vmddlopen Roland Schulz (Sat Jul 04 2009 - 08:13:37 CDT)
Re: namd-l: Hardware for NAMD / VMD machine Axel Kohlmeyer (Fri Jul 03 2009 - 11:56:08 CDT)
Re: Curious about analytical capabilities of VMD Axel Kohlmeyer (Fri Jul 03 2009 - 11:04:53 CDT)
RE: Manunlly Assign Secondary Structure (May Not Be Realistic) John C. H. Chao (Fri Jul 03 2009 - 04:42:10 CDT)
Hardware for NAMD / VMD machine Olve Peersen (Fri Jul 03 2009 - 01:26:11 CDT)
Re: Manunlly Assign Secondary Structure (May Not Be Realistic) Axel Kohlmeyer (Thu Jul 02 2009 - 14:42:30 CDT)
RE: Coloring atoms by a general scalar Heidenreich, Joseph David (Thu Jul 02 2009 - 14:17:25 CDT)
Be the largest man around petefred_at_ks.uiuc.edu (Thu Jul 02 2009 - 13:35:37 CDT)
Manunlly Assign Secondary Structure (May Not Be Realistic) John C. H. Chao (Thu Jul 02 2009 - 06:00:07 CDT)
Re: superimposing proteins based on a few residues Axel Kohlmeyer (Wed Jul 01 2009 - 17:13:25 CDT)
superimposing proteins based on a few residues Irene Newhouse (Wed Jul 01 2009 - 15:59:33 CDT)
Re: Coloring atoms by a general scalar Axel Kohlmeyer (Wed Jul 01 2009 - 08:12:52 CDT)
Re: Curious about analytical capabilities of VMD Bjoern Olausson (Wed Jul 01 2009 - 07:19:39 CDT)
Re: Coloring atoms by a general scalar Pawel Kedzierski (Wed Jul 01 2009 - 04:27:32 CDT)
Re: Elliptic molecules Erik Abrahamsson (Tue Jun 30 2009 - 18:25:41 CDT)
Re: Some VMD questions Axel Kohlmeyer (Tue Jun 30 2009 - 13:56:02 CDT)
Re: Some VMD questions Daniel Gaston (Tue Jun 30 2009 - 13:10:14 CDT)
Re: Coloring atoms by a general scalar Axel Kohlmeyer (Tue Jun 30 2009 - 12:53:26 CDT)
Some VMD questions Steve Jensen (Tue Jun 30 2009 - 12:27:01 CDT)
Coloring atoms by a general scalar Heidenreich, Joseph David (Tue Jun 30 2009 - 12:19:29 CDT)
Re: Funny tcl/tk script behavior.... Alberto Sergio Garay (Tue Jun 30 2009 - 12:08:32 CDT)
Re: Funny tcl/tk script behavior.... Axel Kohlmeyer (Tue Jun 30 2009 - 09:48:45 CDT)
Funny tcl/tk script behavior.... Alberto Sergio Garay (Tue Jun 30 2009 - 08:02:57 CDT)
Re: atom name can not exceed four characters in pdb and psf? Axel Kohlmeyer (Mon Jun 29 2009 - 22:32:22 CDT)
atom name can not exceed four characters in pdb and psf? accomp lin (Mon Jun 29 2009 - 21:59:36 CDT)
Packed with Antioxidants . Acai Berry. petefred_at_ks.uiuc.edu (Mon Jun 29 2009 - 21:30:17 CDT)
Oprah certified wieght loss solution Acai.Berri. petefred_at_ks.uiuc.edu (Mon Jun 29 2009 - 19:29:14 CDT)
GPGPU Programming summer school at University of Tennessee, Aug 10-14. Axel Kohlmeyer (Mon Jun 29 2009 - 14:44:15 CDT)
Re: running vmd on computer node Axel Kohlmeyer (Mon Jun 29 2009 - 13:46:51 CDT)
running vmd on computer node BIN ZHANG (Mon Jun 29 2009 - 12:55:08 CDT)
Re: Curious about analytical capabilities of VMD Axel Kohlmeyer (Mon Jun 29 2009 - 08:51:01 CDT)
Re: Curious about analytical capabilities of VMD Bjoern Olausson (Mon Jun 29 2009 - 05:29:33 CDT)
Re: Problem using pbc wrap..... Olaf Lenz (Sat Jun 27 2009 - 10:44:53 CDT)
Re: Problem using pbc wrap..... Alberto Sergio Garay (Fri Jun 26 2009 - 15:01:35 CDT)
Re: Rejecting plugin... John Stone (Fri Jun 26 2009 - 14:28:30 CDT)
Re: selection update John Stone (Fri Jun 26 2009 - 14:26:51 CDT)
Re: Problem using pbc wrap..... Olaf Lenz (Fri Jun 26 2009 - 10:06:06 CDT)
selection update kumar prashanth (Fri Jun 26 2009 - 08:03:21 CDT)
Problem using pbc wrap..... Alberto Sergio Garay (Fri Jun 26 2009 - 07:13:44 CDT)
Re: Curious about analytical capabilities of VMD Axel Kohlmeyer (Fri Jun 26 2009 - 07:09:06 CDT)
Curious about analytical capabilities of VMD Bjoern Olausson (Fri Jun 26 2009 - 03:48:05 CDT)
Re: Rejecting plugin... Gustavo Seabra (Thu Jun 25 2009 - 15:15:25 CDT)
Re: Multimodel PDB files with Different Models? John Stone (Thu Jun 25 2009 - 13:11:30 CDT)
Re: constant region selection for animation John Stone (Thu Jun 25 2009 - 10:03:21 CDT)
constant region selection for animation Dan Lussier (Thu Jun 25 2009 - 09:55:00 CDT)
Re: regarding positioning of protein molecule Ramya Gamini (Thu Jun 25 2009 - 01:48:07 CDT)
Re: vmd 1.8.7 not spawn new console: feature,bug, or just different? John Stone (Thu Jun 25 2009 - 01:06:02 CDT)
Re: vmd 1.8.7 not spawn new console: feature,bug, or just different? Olaf Lenz (Thu Jun 25 2009 - 00:52:39 CDT)
Re: "no CUDA accelerator devices available", Nvidia GeForce 9600 GT card Low Soo Mei (Thu Jun 25 2009 - 00:41:15 CDT)
Re: Rejecting plugin... John Stone (Wed Jun 24 2009 - 22:31:15 CDT)
Re: "no CUDA accelerator devices available", Nvidia GeForce 9600 GT card John Stone (Wed Jun 24 2009 - 22:17:52 CDT)
"no CUDA accelerator devices available", Nvidia GeForce 9600 GT card Low Soo Mei (Wed Jun 24 2009 - 21:44:35 CDT)
Multimodel PDB files with Different Models? Kevin Wu (Wed Jun 24 2009 - 21:05:30 CDT)
Re: Rejecting plugin... Gustavo Seabra (Wed Jun 24 2009 - 17:53:26 CDT)
Re: residue index problem John Stone (Wed Jun 24 2009 - 16:40:44 CDT)
residue index problem Jianhui Tian (Wed Jun 24 2009 - 15:51:54 CDT)
Re: joystick, win32 simple interface John Stone (Wed Jun 24 2009 - 15:50:18 CDT)
Re: trace the distance between center of mass of one certain residue and the other John Stone (Wed Jun 24 2009 - 15:34:05 CDT)
Re: vmd 1.8.7 not spawn new console: feature,bug, or just different? John Stone (Wed Jun 24 2009 - 15:24:32 CDT)
vmd 1.8.7 not spawn new console: feature,bug, or just different? Thomas C. Bishop (Wed Jun 24 2009 - 15:08:07 CDT)
trace the distance between center of mass of one certain residue and the other Naiyin Yu (Wed Jun 24 2009 - 14:59:14 CDT)
Re: Rejecting plugin... John Stone (Wed Jun 24 2009 - 14:34:53 CDT)
Re: Rejecting plugin... Axel Kohlmeyer (Wed Jun 24 2009 - 14:30:15 CDT)
Rejecting plugin... Gustavo Seabra (Wed Jun 24 2009 - 14:04:25 CDT)
Re: vmd error message in Fedora 11 Axel Kohlmeyer (Wed Jun 24 2009 - 12:07:24 CDT)
vmd error message in Fedora 11 snoze pa (Wed Jun 24 2009 - 11:04:15 CDT)
bigdcd v3 available. testers needed. Axel Kohlmeyer (Wed Jun 24 2009 - 09:07:14 CDT)
joystick, win32 simple interface Biff Forbush (Tue Jun 23 2009 - 18:32:57 CDT)
Re: Plugins: plz add one more conversion to unit_conversion.h John Stone (Mon Jun 22 2009 - 14:54:33 CDT)
Re: VMD 1.8.7 beta5 probs with NVIDIA Quadro FX3450/4000 graphic card John Stone (Mon Jun 22 2009 - 09:29:11 CDT)
VMD 1.8.7 beta5 probs with NVIDIA Quadro FX3450/4000 graphic card Baumert, Uwe Dr.rer.nat. (Mon Jun 22 2009 - 04:18:54 CDT)
Plugins: plz add one more conversion to unit_conversion.h Rob (Sun Jun 21 2009 - 21:00:57 CDT)
tag heuer rep watch for you; Forest Jefferson (Sat Jun 20 2009 - 05:44:49 CDT)
Re: alignment Axel Kohlmeyer (Fri Jun 19 2009 - 10:56:09 CDT)
alignment Alison Grinthal (Fri Jun 19 2009 - 09:45:28 CDT)
Re: transformation matrix John Stone (Thu Jun 18 2009 - 15:39:12 CDT)
Re: transformation matrix Thomas Evangelidis (Thu Jun 18 2009 - 15:36:13 CDT)
Re: transformation matrix Thomas Evangelidis (Thu Jun 18 2009 - 15:34:51 CDT)
Re: transformation matrix JC Gumbart (Thu Jun 18 2009 - 15:15:34 CDT)
porsche design is your style; Fletcher Quick (Thu Jun 18 2009 - 14:18:17 CDT)
Re: "Re: ABINIT plugin ready for testing: can read GEO and DEN files. Axel Kohlmeyer (Thu Jun 18 2009 - 11:13:59 CDT)
Re: "Re: ABINIT plugin ready for testing: can read GEO and DEN files. John Stone (Thu Jun 18 2009 - 09:59:46 CDT)
transformation matrix Thomas Evangelidis (Thu Jun 18 2009 - 02:55:52 CDT)
"Re: ABINIT plugin ready for testing: can read GEO and DEN files. Rob (Thu Jun 18 2009 - 02:27:08 CDT)
Re: Re: ABINIT plugin ready for testing: can read GEO and DEN files. Axel Kohlmeyer (Wed Jun 17 2009 - 12:01:30 CDT)
Re: Re: ABINIT plugin ready for testing: can read GEO and DEN files. John Stone (Wed Jun 17 2009 - 11:33:20 CDT)
Re: ABINIT plugin ready for testing: can read GEO and DEN files. Rob (Wed Jun 17 2009 - 10:59:23 CDT)
Wrong coordinates using guesscoord in psfgen - lipids poker_at_physics.usyd.edu.au (Wed Jun 17 2009 - 02:30:55 CDT)
Re: Re: ABINIT plugin ready for testing: can read GEO and DEN files. Axel Kohlmeyer (Tue Jun 16 2009 - 22:59:20 CDT)
Re: Re: ABINIT plugin ready for testing: can read GEO and DEN files. John Stone (Tue Jun 16 2009 - 21:33:31 CDT)
Re: ABINIT plugin ready for testing: can read GEO and DEN files. Rob (Tue Jun 16 2009 - 21:23:22 CDT)
Re: movie maker John Stone (Tue Jun 16 2009 - 09:59:26 CDT)
movie maker Alison Grinthal (Tue Jun 16 2009 - 09:44:48 CDT)
Re: Molscripts John Stone (Tue Jun 16 2009 - 09:23:24 CDT)
Molscripts Tomek Wlodarski (Tue Jun 16 2009 - 08:54:22 CDT)
Re: Re: ABINIT plugin ready for testing: can read GEO and DEN files. Axel Kohlmeyer (Tue Jun 16 2009 - 07:31:03 CDT)
Re: ABINIT plugin ready for testing: can read GEO and DEN files. Rob (Tue Jun 16 2009 - 03:27:28 CDT)
Re: "Save coordinates..." silently overwrites existing files... Axel Kohlmeyer (Mon Jun 15 2009 - 11:29:10 CDT)
Re: using atomselect to write a set of atoms and not some residue whose residue numbers are in a list John Stone (Mon Jun 15 2009 - 10:38:18 CDT)
Re: Ho to save exactly the screen structure? Víctor (Mon Jun 15 2009 - 10:32:25 CDT)
using atomselect to write a set of atoms and not some residue whose residue numbers are in a list maria goranovic (Mon Jun 15 2009 - 10:31:26 CDT)
"Save coordinates..." silently overwrites existing files... Rob (Mon Jun 15 2009 - 10:25:10 CDT)
Re: Ho to save exactly the screen structure? Axel Kohlmeyer (Mon Jun 15 2009 - 10:20:28 CDT)
Re: ABINIT plugin ready for testing: can read GEO and DEN files. Axel Kohlmeyer (Mon Jun 15 2009 - 10:18:34 CDT)
Re: Memory allocation problem Axel Kohlmeyer (Mon Jun 15 2009 - 10:00:02 CDT)
Re: ABINIT plugin ready for testing: can read GEO and DEN files. John Stone (Mon Jun 15 2009 - 09:52:21 CDT)
Re: Ho to save exactly the screen structure? Peter Freddolino (Mon Jun 15 2009 - 09:45:56 CDT)
Re: Memory allocation problem Peter Freddolino (Mon Jun 15 2009 - 09:22:49 CDT)
Re: psfgen: auto none not working Peter Freddolino (Mon Jun 15 2009 - 06:50:46 CDT)
Memory allocation problem kumar prashanth (Mon Jun 15 2009 - 04:06:49 CDT)
psfgen: auto none not working Ruchi Sachdeva (Mon Jun 15 2009 - 03:57:25 CDT)
Re: Ho to save exactly the screen structure? Víctor (Mon Jun 15 2009 - 02:21:43 CDT)
ABINIT plugin ready for testing: can read GEO and DEN files. Rob (Mon Jun 15 2009 - 01:32:28 CDT)
Re: vmdnumpy for IED... Axel Kohlmeyer (Sun Jun 14 2009 - 18:23:41 CDT)
vmdnumpy for IED... Cihan Aydin (Sun Jun 14 2009 - 17:42:36 CDT)
Re: Ho to save exactly the screen structure? Axel Kohlmeyer (Sun Jun 14 2009 - 16:58:32 CDT)
Ho to save exactly the screen structure? Víctor (Sun Jun 14 2009 - 15:35:55 CDT)
RE: Re: [lammps-users] LAMMPS to VMD: lmp2vmd tool Axel Kohlmeyer (Sat Jun 13 2009 - 17:00:27 CDT)
Re: Tcl commands and X11 Axel Kohlmeyer (Fri Jun 12 2009 - 13:26:59 CDT)
Tcl commands and X11 craig bullington (Fri Jun 12 2009 - 11:48:37 CDT)
Re: VMD and X forwarding to MacOS 10.5.7 Benjamin Bouvier (Fri Jun 12 2009 - 11:33:47 CDT)
Re: vmd 1.8.7 - problems loading vmd state file lucie delemotte (Fri Jun 12 2009 - 11:17:35 CDT)
Re: VMD and X forwarding to MacOS 10.5.7 John Stone (Fri Jun 12 2009 - 11:17:22 CDT)
Re: VMD and X forwarding to MacOS 10.5.7 Benjamin Bouvier (Fri Jun 12 2009 - 10:45:37 CDT)
Re: VMD and X forwarding to MacOS 10.5.7 John Stone (Fri Jun 12 2009 - 10:36:49 CDT)
Re: Transparency settings John Stone (Fri Jun 12 2009 - 10:32:15 CDT)
Re: VMD and X forwarding to MacOS 10.5.7 Benjamin Bouvier (Fri Jun 12 2009 - 10:28:17 CDT)
Re: VMD and X forwarding to MacOS 10.5.7 John Stone (Fri Jun 12 2009 - 10:02:33 CDT)
VMD and X forwarding to MacOS 10.5.7 Benjamin Bouvier (Fri Jun 12 2009 - 09:48:29 CDT)
Re: vmd 1.8.7 - problems loading vmd state file John Stone (Fri Jun 12 2009 - 09:44:29 CDT)
Re: vmd 1.8.7 - problems loading vmd state file Marius Retegan (Fri Jun 12 2009 - 08:47:39 CDT)
Re: vmd 1.8.7 - problems loading vmd state file John Stone (Thu Jun 11 2009 - 21:30:22 CDT)
Re: FW: Unable to render electrostatic potential cube files with most non-HF densities Axel Kohlmeyer (Thu Jun 11 2009 - 09:19:21 CDT)
Re: vmd 1.8.7 - problems loading vmd state file John Stone (Thu Jun 11 2009 - 08:59:54 CDT)
Re: FW: Unable to render electrostatic potential cube files with most non-HF densities John Stone (Thu Jun 11 2009 - 08:54:59 CDT)
FW: Unable to render electrostatic potential cube files with most non-HF densities Whiteside, Alexander (Thu Jun 11 2009 - 08:39:21 CDT)
Re: Transparency settings Bjoern Olausson (Thu Jun 11 2009 - 06:09:15 CDT)
Re: namdplot 1.0 John Stone (Wed Jun 10 2009 - 23:03:34 CDT)
namdplot 1.0 Thomas C. Bishop (Wed Jun 10 2009 - 22:14:11 CDT)
Re: vmd 1.8.7 - problems loading vmd state file John Stone (Wed Jun 10 2009 - 11:47:28 CDT)
Re: plugin: can I load volumetric data as frames (i.e. timesteps)? Ondrej Marsalek (Wed Jun 10 2009 - 11:28:26 CDT)
Re: plugin: can I load volumetric data as frames (i.e. timesteps)? John Stone (Wed Jun 10 2009 - 11:12:17 CDT)
Re: vmd cannot be launched after successful installation John Stone (Wed Jun 10 2009 - 11:02:58 CDT)
Re: Transparency settings John Stone (Wed Jun 10 2009 - 10:57:58 CDT)
vmd cannot be launched after successful installation Stefano Meliga (Wed Jun 10 2009 - 10:58:15 CDT)
Re: NewCartoon not among Drawing methods John Stone (Wed Jun 10 2009 - 10:44:13 CDT)
Re: NewCartoon not among Drawing methods Stefano Meliga (Wed Jun 10 2009 - 10:36:41 CDT)
Re: Transparency settings Bjoern Olausson (Wed Jun 10 2009 - 10:29:08 CDT)
Re: NewCartoon not among Drawing methods Stefano Meliga (Wed Jun 10 2009 - 10:24:26 CDT)
Re: plugin: can I load volumetric data as frames (i.e. timesteps)? Ondrej Marsalek (Wed Jun 10 2009 - 10:09:03 CDT)
Re: NewCartoon not among Drawing methods John Stone (Wed Jun 10 2009 - 10:06:53 CDT)
Re: NewCartoon not among Drawing methods Stefano Meliga (Wed Jun 10 2009 - 10:04:09 CDT)
RE: Re: [lammps-users] LAMMPS to VMD: lmp2vmd tool Chetan Mahajan (Wed Jun 10 2009 - 10:00:30 CDT)
Re: NewCartoon not among Drawing methods John Stone (Wed Jun 10 2009 - 09:49:59 CDT)
Re: NAMDEnergy John Stone (Wed Jun 10 2009 - 09:47:29 CDT)
Re: plugin: can I load volumetric data as frames (i.e. timesteps)? John Stone (Wed Jun 10 2009 - 09:43:20 CDT)
Re: Transparency settings Axel Kohlmeyer (Wed Jun 10 2009 - 09:38:57 CDT)
Re: Transparency settings Eric H. Lee (Wed Jun 10 2009 - 09:23:55 CDT)
Transparency settings Bjoern Olausson (Wed Jun 10 2009 - 09:13:13 CDT)
NAMDEnergy Andres Morales N (Wed Jun 10 2009 - 08:59:51 CDT)
NewCartoon not among Drawing methods Stefano Meliga (Wed Jun 10 2009 - 08:48:26 CDT)
RE: Re: [lammps-users] LAMMPS to VMD: lmp2vmd tool Axel Kohlmeyer (Wed Jun 10 2009 - 08:36:44 CDT)
Re: plugin: can I load volumetric data as frames (i.e. timesteps)? Axel Kohlmeyer (Wed Jun 10 2009 - 08:16:58 CDT)
Re: plugin: can I load volumetric data as frames (i.e. timesteps)? Ondrej Marsalek (Wed Jun 10 2009 - 07:54:05 CDT)
Re: plugin: can I load volumetric data as frames (i.e. timesteps)? John Stone (Wed Jun 10 2009 - 07:24:05 CDT)
plugin: can I load volumetric data as frames (i.e. timesteps)? Rob (Wed Jun 10 2009 - 03:11:34 CDT)
Re: bonds not created as desired Akemi Matsuno-Yagi (Tue Jun 09 2009 - 15:09:25 CDT)
Re: bonds not created as desired John Stone (Tue Jun 09 2009 - 14:55:44 CDT)
RE: Re: [lammps-users] LAMMPS to VMD: lmp2vmd tool Chetan Mahajan (Tue Jun 09 2009 - 13:08:16 CDT)
bonds not created as desired Akemi Matsuno-Yagi (Tue Jun 09 2009 - 13:01:09 CDT)
psfgen: how to place patches to end of residue definition in pdb file? Sebastian Stolzenberg (Tue Jun 09 2009 - 11:33:41 CDT)
Re: vmd 1.8.7 - problems loading vmd state file Marius Retegan (Tue Jun 09 2009 - 11:30:43 CDT)
Re: vmd 1.8.7 - problems loading vmd state file John Stone (Tue Jun 09 2009 - 11:26:01 CDT)
Re: vmd 1.8.7 - problems loading vmd state file John Stone (Tue Jun 09 2009 - 09:48:41 CDT)
Re: Re: crystal eyes vmd John Stone (Tue Jun 09 2009 - 09:47:17 CDT)
Re: Re: crystal eyes vmd Thomas Lemmin (Tue Jun 09 2009 - 08:06:30 CDT)
Re: Cannot load file for SASA analysis Lili Peng (Mon Jun 08 2009 - 20:39:16 CDT)
Re: vmd 1.8.7 - problems loading vmd state file John Stone (Mon Jun 08 2009 - 16:15:15 CDT)
Re: MSMS installation John Stone (Mon Jun 08 2009 - 16:09:42 CDT)
MSMS installation craig bullington (Mon Jun 08 2009 - 14:27:57 CDT)
Re: Re: crystal eyes vmd John Stone (Mon Jun 08 2009 - 09:40:36 CDT)
Re: Re: crystal eyes vmd Thomas Lemmin (Mon Jun 08 2009 - 09:33:07 CDT)
Re: Re: crystal eyes vmd John Stone (Mon Jun 08 2009 - 09:00:54 CDT)
Re: Re: crystal eyes vmd Thomas Lemmin (Mon Jun 08 2009 - 08:54:04 CDT)
Re: Re: crystal eyes vmd John Stone (Mon Jun 08 2009 - 08:43:56 CDT)
Re: crystal eyes vmd Thomas Lemmin (Mon Jun 08 2009 - 08:21:48 CDT)
crystal eyes vmd Thomas Lemmin (Mon Jun 08 2009 - 08:16:22 CDT)
Re: atom selection Eric H. Lee (Sun Jun 07 2009 - 23:46:39 CDT)
atom selection Deepti Mishra (Sun Jun 07 2009 - 23:32:43 CDT)
Re: NAMDEnergy Peter Freddolino (Sun Jun 07 2009 - 16:41:54 CDT)
Re: NAMDEnergy Eric H. Lee (Sun Jun 07 2009 - 15:37:30 CDT)
NAMDEnergy Andres Morales N (Sun Jun 07 2009 - 15:24:33 CDT)
NAMDEnergy Andres Morales N (Sun Jun 07 2009 - 15:23:35 CDT)
Building LPS membrane dipti lele (Sun Jun 07 2009 - 00:35:50 CDT)
Re: Vector corresponding to the long axis Peter Freddolino (Fri Jun 05 2009 - 19:53:16 CDT)
Vector corresponding to the long axis Navendu bhatnagar (Fri Jun 05 2009 - 17:26:16 CDT)
Re: vmd 1.8.7 - problems loading vmd state file Axel Kohlmeyer (Fri Jun 05 2009 - 11:09:59 CDT)
Re: vmd 1.8.7 - problems loading vmd state file John Stone (Fri Jun 05 2009 - 11:04:08 CDT)
Re: disulphide bond formation Axel Kohlmeyer (Fri Jun 05 2009 - 10:45:12 CDT)
disulphide bond formation gurunath katagi (Fri Jun 05 2009 - 10:14:11 CDT)
debugging tool for atomselect Axel Kohlmeyer (Thu Jun 04 2009 - 17:05:10 CDT)
Memory Problem with tcl/tk script...(Solved!) Alberto Sergio Garay (Thu Jun 04 2009 - 07:08:19 CDT)
Re: Energy Axel Kohlmeyer (Wed Jun 03 2009 - 22:29:45 CDT)
Re: Energy John Stone (Wed Jun 03 2009 - 22:04:04 CDT)
Energy Andres Morales N (Wed Jun 03 2009 - 21:50:41 CDT)
Memory Problem with tcl/tk script...(3) Alberto Sergio Garay (Wed Jun 03 2009 - 14:17:07 CDT)
Re: vmd 1.8.7 - problems loading vmd state file John Stone (Wed Jun 03 2009 - 14:05:48 CDT)
Re: Memory Problem with tcl/tk script...(2) Axel Kohlmeyer (Wed Jun 03 2009 - 13:57:40 CDT)
Re: Memory Problem with tcl/tk script...(2) Robert Brunner (Wed Jun 03 2009 - 13:48:49 CDT)
Memory Problem with tcl/tk script...(2) Alberto Sergio Garay (Wed Jun 03 2009 - 12:54:53 CDT)
Re: vmd 1.8.7 - problems loading vmd state file Axel Kohlmeyer (Wed Jun 03 2009 - 08:16:06 CDT)
Re: vmd 1.8.7 - problems loading vmd state file lucie delemotte (Wed Jun 03 2009 - 02:36:51 CDT)
Re: VMD HOLE Result daniel aguayo (Tue Jun 02 2009 - 17:03:26 CDT)
Re: adding atoms to empty molecules Thomas Evangelidis (Tue Jun 02 2009 - 15:57:56 CDT)
Re: VMD HOLE Result Hyundeok Song (Tue Jun 02 2009 - 14:05:59 CDT)
Re: vmd 1.8.7 - problems loading vmd state file John Stone (Tue Jun 02 2009 - 14:01:12 CDT)
Re: vmd 1.8.7 - problems loading vmd state file lucie delemotte (Tue Jun 02 2009 - 11:42:38 CDT)
Re: vmd 1.8.7 - problems loading vmd state file John Stone (Tue Jun 02 2009 - 11:15:39 CDT)
Re: vmd 1.8.7 - problems loading vmd state file lucie delemotte (Tue Jun 02 2009 - 10:48:19 CDT)
Re: vmd 1.8.7 - problems loading vmd state file John Stone (Tue Jun 02 2009 - 10:39:18 CDT)
vmd 1.8.7 - problems loading vmd state file lucie delemotte (Tue Jun 02 2009 - 10:31:26 CDT)
Re: Accelerating your VMD 1.8.7 calculations with an NVIDIA Tesla GPU John Stone (Tue Jun 02 2009 - 10:25:36 CDT)
Re: APBS error : Cannot read output file John Stone (Tue Jun 02 2009 - 09:55:51 CDT)
Re: VMD HOLE Result John Stone (Tue Jun 02 2009 - 09:53:26 CDT)
APBS error : Cannot read output file Navendu bhatnagar (Tue Jun 02 2009 - 09:51:01 CDT)
Re: Memory Problem with tcl/tk script... Axel Kohlmeyer (Tue Jun 02 2009 - 09:27:22 CDT)
Re: adding atoms to empty molecules Axel Kohlmeyer (Tue Jun 02 2009 - 09:22:43 CDT)
VMD HOLE Result Hyundeok Song (Tue Jun 02 2009 - 08:49:20 CDT)
Memory Problem with tcl/tk script... Alberto Sergio Garay (Tue Jun 02 2009 - 07:25:16 CDT)
adding atoms to empty molecules Thomas Evangelidis (Mon Jun 01 2009 - 13:47:07 CDT)
VMD 1.8.7 Beta 5 -- Possible bug when typing in the VMD menu boxes. JT (Mon Jun 01 2009 - 17:29:07 CDT)
VMD 1.8.7 beta 5 posted for download John Stone (Mon Jun 01 2009 - 16:11:31 CDT)
Accelerating your VMD 1.8.7 calculations with an NVIDIA Tesla GPU Jacob Story (Mon Jun 01 2009 - 09:20:22 CDT)
Re: Linking to molfile_plugin libraries David Tanner (Fri May 29 2009 - 13:30:24 CDT)
Re: Linking to molfile_plugin libraries John Stone (Fri May 29 2009 - 13:24:30 CDT)
Re: Linking to molfile_plugin libraries David Tanner (Fri May 29 2009 - 13:18:28 CDT)
Re: Linking to molfile_plugin libraries John Stone (Fri May 29 2009 - 13:07:26 CDT)
Linking to molfile_plugin libraries David Tanner (Fri May 29 2009 - 13:02:59 CDT)
Re: Macbook and VMD Tk windows John Stone (Fri May 29 2009 - 09:17:20 CDT)
Re: Macbook and VMD Tk windows Axel Kohlmeyer (Fri May 29 2009 - 08:07:21 CDT)
Macbook and VMD Tk windows madura_at_duq.edu (Fri May 29 2009 - 06:49:08 CDT)
Re: default colors MyLinkka (Fri May 29 2009 - 05:15:26 CDT)
Re: VMD crash Axel Kohlmeyer (Thu May 28 2009 - 19:46:33 CDT)
Re: VMD crash John Stone (Thu May 28 2009 - 19:32:44 CDT)
Re: statistics in VMD John Stone (Thu May 28 2009 - 19:25:09 CDT)
statistics in VMD Thomas C. Bishop (Thu May 28 2009 - 19:18:17 CDT)
Re: VMD crash Axel Kohlmeyer (Thu May 28 2009 - 19:05:48 CDT)
Re: VMD crash John Stone (Thu May 28 2009 - 15:13:22 CDT)
VMD crash snoze pa (Thu May 28 2009 - 14:45:10 CDT)
Re: [lammps-users] LAMMPS to VMD: lmp2vmd tool Axel Kohlmeyer (Thu May 28 2009 - 10:31:42 CDT)
Re: main window missing? BIN ZHANG (Wed May 27 2009 - 16:36:07 CDT)
Re: problem with dispdev Axel Kohlmeyer (Wed May 27 2009 - 16:20:37 CDT)
Re: problem with dispdev John Stone (Wed May 27 2009 - 16:02:38 CDT)
Re: main window missing? Axel Kohlmeyer (Wed May 27 2009 - 16:01:33 CDT)
Re: main window missing? John Stone (Wed May 27 2009 - 16:00:55 CDT)
problem with dispdev KIRTANA S (Wed May 27 2009 - 15:59:41 CDT)
Re: main window missing? BIN ZHANG (Wed May 27 2009 - 15:49:40 CDT)
Re: main window missing? John Stone (Wed May 27 2009 - 15:30:21 CDT)
main window missing? BIN ZHANG (Wed May 27 2009 - 15:17:40 CDT)
Need testers for VMD/Tachyon volumetric coloring feature :-) John Stone (Wed May 27 2009 - 14:37:59 CDT)
Re: Isosurface and Fieldlines Not rendered in colour Burak Cankurtaran (Tue May 26 2009 - 21:17:36 CDT)
Re: default colors John Stone (Tue May 26 2009 - 17:03:39 CDT)
Re: Offset for frame ids in dcd trajectory John Stone (Tue May 26 2009 - 15:32:40 CDT)
Angles in psf file KIRTANA S (Tue May 26 2009 - 15:05:20 CDT)
Re: new problem John Stone (Tue May 26 2009 - 11:05:07 CDT)
Heat capacity zizi moradi (Sun May 24 2009 - 16:39:45 CDT)
Re: Isosurface and Fieldlines Not rendered in colour John Stone (Tue May 26 2009 - 02:42:15 CDT)
Re: Isosurface and Fieldlines Not rendered in colour Axel Kohlmeyer (Tue May 26 2009 - 08:44:49 CDT)
Re: default colors MyLinkka (Tue May 26 2009 - 04:57:50 CDT)
Isosurface and Fieldlines Not rendered in colour Burak Cankurtaran (Tue May 26 2009 - 00:15:44 CDT)
Re: Operations with MD frames - acquiring time infromation John Stone (Mon May 25 2009 - 23:44:49 CDT)
Re: Plugin: molfile_plugin_t filename_extension; problem and bug... John Stone (Mon May 25 2009 - 23:28:34 CDT)
Re: VMD crashes in VolumeSlice representation John Stone (Mon May 25 2009 - 23:20:24 CDT)
Re: "Determine file type" list is far too long... John Stone (Mon May 25 2009 - 23:09:16 CDT)
Re: default colors Axel Kohlmeyer (Mon May 25 2009 - 16:10:47 CDT)
bigdcd are related issues. was: Re: VMD 1.8.7 beta 3 posted for download... Axel Kohlmeyer (Mon May 25 2009 - 11:42:59 CDT)
Re: Re: abinit plugin for VMD not yet tried? Axel Kohlmeyer (Mon May 25 2009 - 10:05:30 CDT)
Re: Plugin: molfile_plugin_t filename_extension; problem and bug... Axel Kohlmeyer (Mon May 25 2009 - 09:52:04 CDT)
Re: abinit plugin for VMD not yet tried? Rob (Mon May 25 2009 - 02:04:57 CDT)
Plugin: molfile_plugin_t filename_extension; problem and bug... Rob (Sun May 24 2009 - 22:39:33 CDT)
Re: VMD 1.8.7 beta 3 posted for download... Axel Kohlmeyer (Sun May 24 2009 - 19:52:41 CDT)
Re: Problem in loading data Peter Freddolino (Sun May 24 2009 - 17:53:19 CDT)
Re: How to compute excluded volume using volmap? Axel Kohlmeyer (Sun May 24 2009 - 14:32:20 CDT)
Re: How to compute excluded volume using volmap? Suman Chakrabarty (Sun May 24 2009 - 14:12:06 CDT)
Re: VMD crashes in VolumeSlice representation Axel Kohlmeyer (Sun May 24 2009 - 13:49:41 CDT)
VMD crashes in VolumeSlice representation Suman Chakrabarty (Sun May 24 2009 - 13:09:10 CDT)
Re: "Determine file type" list is far too long... Axel Kohlmeyer (Sun May 24 2009 - 11:40:33 CDT)
Re: Problem in loading data Axel Kohlmeyer (Sun May 24 2009 - 11:08:09 CDT)
Problem in loading data Jae Hyun Park (Sun May 24 2009 - 10:38:24 CDT)
Re: "Determine file type" list is far too long... Axel Kohlmeyer (Sun May 24 2009 - 08:52:35 CDT)
Re: Re: abinit plugin for VMD not yet tried? Axel Kohlmeyer (Sun May 24 2009 - 08:38:11 CDT)
"Determine file type" list is far too long... Rob (Sun May 24 2009 - 04:45:30 CDT)
Re: abinit plugin for VMD not yet tried? Rob (Sun May 24 2009 - 04:31:17 CDT)
Re: solvent accessible surface area Peter Freddolino (Sat May 23 2009 - 14:19:37 CDT)
solvent accessible surface area zizi moradi (Sat May 23 2009 - 13:11:19 CDT)
Offset for frame ids in dcd trajectory DimitryASuplatov (Sat May 23 2009 - 11:11:09 CDT)
Re: Operations with MD frames - acquiring time infromation Peter Freddolino (Sat May 23 2009 - 09:43:28 CDT)
Re: Operations with MD frames - acquiring time infromation DimitryASuplatov (Sat May 23 2009 - 09:21:49 CDT)
Re: Operations with MD frames - acquiring time infromation Peter Freddolino (Sat May 23 2009 - 09:09:49 CDT)
Operations with MD frames - acquiring time infromation DimitryASuplatov (Sat May 23 2009 - 08:16:37 CDT)
Re: Question3 about introducing variables in "mol selection..." Axel Kohlmeyer (Fri May 22 2009 - 17:09:08 CDT)
Question3 about introducing variables in "mol selection..." Alberto Sergio Garay (Fri May 22 2009 - 16:47:25 CDT)
Re: Question2 about introducing variables in "mol selection..." Axel Kohlmeyer (Fri May 22 2009 - 16:10:24 CDT)
Question2 about introducing variables in "mol selection..." Alberto Sergio Garay (Fri May 22 2009 - 15:31:51 CDT)
Re: Question about introducing variables in "mol selection..." Axel Kohlmeyer (Fri May 22 2009 - 11:34:03 CDT)
Re: RMSF John Stone (Fri May 22 2009 - 10:57:39 CDT)
Re: Question about introducing variables in "mol selection..." Peter Freddolino (Fri May 22 2009 - 10:18:59 CDT)
Re: pdb file generated not readable by tleap Axel Kohlmeyer (Fri May 22 2009 - 10:08:06 CDT)
Question about introducing variables in "mol selection..." Alberto Sergio Garay (Fri May 22 2009 - 10:06:54 CDT)
Re: abinit plugin for VMD not yet tried? Axel Kohlmeyer (Fri May 22 2009 - 10:05:14 CDT)
Re: pdb file generated not readable by tleap Myunggi Yi (Fri May 22 2009 - 09:19:36 CDT)
abinit plugin for VMD not yet tried? Rob (Fri May 22 2009 - 02:08:15 CDT)
Re: bonds in .psf file Axel Kohlmeyer (Thu May 21 2009 - 12:48:40 CDT)
bonds in .psf file KIRTANA S (Thu May 21 2009 - 12:32:35 CDT)
Re: angles and dihedrals in .psf file Axel Kohlmeyer (Thu May 21 2009 - 11:28:15 CDT)
angles and dihedrals in .psf file KIRTANA S (Thu May 21 2009 - 10:45:51 CDT)
Re: VMD 1.8.7 beta 3 posted for download... Thomas Evangelidis (Wed May 20 2009 - 23:20:38 CDT)
RMSF Maria Sanchez (Wed May 20 2009 - 23:14:17 CDT)
Re: default colors John Stone (Wed May 20 2009 - 21:11:25 CDT)
Re: New vmd Windows version crash John Stone (Wed May 20 2009 - 20:57:19 CDT)
Re: VMD 1.8.7b3 and desktop effects on Fedora 10 John Stone (Wed May 20 2009 - 20:54:32 CDT)
Re: Adding two separate pdb files: Lipid Bilayer's with Protein's Axel Kohlmeyer (Wed May 20 2009 - 16:34:45 CDT)
Re: pdb file generated not readable by tleap Axel Kohlmeyer (Wed May 20 2009 - 16:28:54 CDT)
pdb file generated not readable by tleap Yi Shang (Wed May 20 2009 - 14:49:26 CDT)
Re: Distance between COM for 2 chains for each frame of trajectory Axel Kohlmeyer (Wed May 20 2009 - 14:05:27 CDT)
Re: Adding two separate pdb files: Lipid Bilayer's with Protein's Lalit (Wed May 20 2009 - 13:36:56 CDT)
Re: Distance between COM for 2 chains for each frame of trajectory Axel Kohlmeyer (Wed May 20 2009 - 12:09:39 CDT)
Re: default colors MyLinkka (Wed May 20 2009 - 11:58:57 CDT)
Distance between COM for 2 chains for each frame of trajectory Florentina Tofoleanu (Wed May 20 2009 - 11:34:18 CDT)
Re: how to load a state from the command line Ondrej Marsalek (Wed May 20 2009 - 10:18:24 CDT)
Re: how to load a state from the command line Axel Kohlmeyer (Wed May 20 2009 - 09:51:47 CDT)
Re: default colors Axel Kohlmeyer (Wed May 20 2009 - 09:38:40 CDT)
how to load a state from the command line maria goranovic (Wed May 20 2009 - 09:21:13 CDT)
Re: VMD 1.8.7b3 and desktop effects on Fedora 10 Axel Kohlmeyer (Wed May 20 2009 - 08:43:16 CDT)
VMD 1.8.7b3 and desktop effects on Fedora 10 Nicolas Sapay (Wed May 20 2009 - 07:48:33 CDT)
Re: Why is the 'antialias' option is grey? MyLinkka (Wed May 20 2009 - 07:31:01 CDT)
Re: New vmd Windows version crash MyLinkka (Wed May 20 2009 - 07:20:14 CDT)
default colors MyLinkka (Wed May 20 2009 - 07:11:35 CDT)
Re: New vmd Windows version crash John Stone (Wed May 20 2009 - 06:59:46 CDT)
Re: Why is the 'antialias' option is grey? John Stone (Wed May 20 2009 - 06:58:21 CDT)
Re: New vmd Windows version crash John Stone (Wed May 20 2009 - 06:55:12 CDT)
Re: New vmd Windows version crash MyLinkka (Wed May 20 2009 - 06:28:10 CDT)
Why is the 'antialias' option is grey? MyLinkka (Wed May 20 2009 - 05:37:47 CDT)
Re: New vmd Windows version crash MyLinkka (Wed May 20 2009 - 05:29:22 CDT)
Re: New vmd Windows version crash John Stone (Tue May 19 2009 - 21:08:44 CDT)
Re: New vmd Windows version crash John Stone (Tue May 19 2009 - 21:02:57 CDT)
Re: Align mistake John Stone (Tue May 19 2009 - 20:32:52 CDT)
Re: NVidia GeForce 3D Vision John Stone (Tue May 19 2009 - 20:28:10 CDT)
Re: Request for change in gaussian cube reader Axel Kohlmeyer (Tue May 19 2009 - 14:32:10 CDT)
Request for change in gaussian cube reader Xavier Cartoixa Soler (Tue May 19 2009 - 13:40:37 CDT)
NVidia GeForce 3D Vision Christoph Weber (Tue May 19 2009 - 12:38:08 CDT)
Align mistake Andres Morales N (Tue May 19 2009 - 11:14:21 CDT)
Re: Adding two separate pdb files: Lipid Bilayer's with Protein's David Tanner (Tue May 19 2009 - 11:00:30 CDT)
RE: Average strcuture Andres Morales N (Tue May 19 2009 - 10:21:28 CDT)
Re: Average strcuture jen hsin (Tue May 19 2009 - 09:08:41 CDT)
Average strcuture Andres Morales N (Tue May 19 2009 - 08:51:23 CDT)
New vmd Windows version crash MyLinkka (Tue May 19 2009 - 05:14:34 CDT)
Re: VMD 1.8.7 beta 3 posted for download... Axel Kohlmeyer (Mon May 18 2009 - 20:29:44 CDT)
Adding two separate pdb files: Lipid Bilayer's with Protein's Lalit (Mon May 18 2009 - 18:07:34 CDT)
VMD 1.8.7 beta 3 posted for download... John Stone (Mon May 18 2009 - 15:24:21 CDT)
VS: Outline rendering style with Tachyon Heikki Kasnanen (Mon May 18 2009 - 14:50:52 CDT)
Re: Outline rendering style with Tachyon John Stone (Mon May 18 2009 - 14:47:33 CDT)
Re: VMD as a python module Ondrej Marsalek (Mon May 18 2009 - 11:30:55 CDT)
Re: VMD as a python module Axel Kohlmeyer (Mon May 18 2009 - 09:27:16 CDT)
Model building questions YangMingjun (Mon May 18 2009 - 08:14:38 CDT)
VMD as a python module Ondrej Marsalek (Mon May 18 2009 - 04:45:39 CDT)
Re: resolved [Re: vmd / python / f10] John Stone (Mon May 18 2009 - 00:15:06 CDT)
resolved [Re: vmd / python / f10] Cameron Mura (Sun May 17 2009 - 19:07:47 CDT)
Re: vmd / python / f10 John Stone (Sun May 17 2009 - 12:20:39 CDT)
Re: vmd / python / f10 Axel Kohlmeyer (Sun May 17 2009 - 08:37:47 CDT)
Re: vmd / python / f10 Cameron Mura (Sat May 16 2009 - 22:00:29 CDT)
Re: vmd / python / f10 John Stone (Sat May 16 2009 - 18:57:24 CDT)
vmd / python / f10 Cameron Mura (Sat May 16 2009 - 18:43:18 CDT)
Re: namdenergy missing for -dispdev none (vmd 1.8.6) Axel Kohlmeyer (Fri May 15 2009 - 13:27:22 CDT)
Re: namdenergy missing for -dispdev none (vmd 1.8.6) Peter Freddolino (Fri May 15 2009 - 12:43:50 CDT)
namdenergy missing for -dispdev none (vmd 1.8.6) Thomas C. Bishop (Fri May 15 2009 - 12:37:13 CDT)
Re: Change requested in lammps plugin for VMD Axel Kohlmeyer (Fri May 15 2009 - 12:32:48 CDT)
Change requested in lammps plugin for VMD Gopinath Subramanian (Fri May 15 2009 - 11:42:38 CDT)
Re: adding bonds with the mouse and writing psf Axel Kohlmeyer (Fri May 15 2009 - 10:28:59 CDT)
Re: adding bonds with the mouse and writing psf John Stone (Thu May 14 2009 - 20:59:20 CDT)
Re: a small bug in solvate 1.3 John Stone (Thu May 14 2009 - 20:45:17 CDT)
adding bonds with the mouse and writing psf Maxim Paliy. (Thu May 14 2009 - 20:01:40 CDT)
a small bug in solvate 1.3 Maxim Paliy. (Thu May 14 2009 - 19:06:32 CDT)
solvate v1.3 bug Íõ—² (Thu May 14 2009 - 07:43:23 CDT)
Re: How to color atom by charge Axel Kohlmeyer (Thu May 14 2009 - 07:01:32 CDT)
How to color atom by charge loc duong ding (Thu May 14 2009 - 00:46:38 CDT)
Re: Translate Peter Freddolino (Wed May 13 2009 - 22:41:34 CDT)
Translate Andres Morales N (Wed May 13 2009 - 22:25:22 CDT)
Re: Can bonds radius be controlled by tcl command? Axel Kohlmeyer (Wed May 13 2009 - 17:55:17 CDT)
Re: Color problem. Axel Kohlmeyer (Wed May 13 2009 - 17:45:44 CDT)
Re: Can bonds radius be controlled by tcl command? Roman Petrenko (Wed May 13 2009 - 17:09:09 CDT)
Re: Can bonds radius be controlled by tcl command? John Stone (Wed May 13 2009 - 16:19:16 CDT)
Re: Color problem. John Stone (Wed May 13 2009 - 16:17:12 CDT)
Color problem. knowlesc_at_msu.edu (Wed May 13 2009 - 13:55:31 CDT)
Can bonds radius be controlled by tcl command? accomp lin (Wed May 13 2009 - 03:54:47 CDT)
VMD 1.8.7 beta 2 posted for download John Stone (Wed May 13 2009 - 14:09:40 CDT)
Axes Andres Morales N (Wed May 13 2009 - 08:42:45 CDT)
Re: Sphere representaion with radius from pdb field "occupancy" or "temp. fac" Axel Kohlmeyer (Wed May 13 2009 - 05:56:32 CDT)
Sphere representaion with radius from pdb field "occupancy" or "temp. fac" Thomas Zauner (Wed May 13 2009 - 05:08:50 CDT)
Re: How to compute excluded volume using volmap? Suman Chakrabarty (Tue May 12 2009 - 16:33:11 CDT)
Re: vdna 2.0 for VMD John Stone (Tue May 12 2009 - 16:04:44 CDT)
vdna 2.0 for VMD Thomas C. Bishop (Tue May 12 2009 - 15:08:26 CDT)
Re: How to compute excluded volume using volmap? Axel Kohlmeyer (Tue May 12 2009 - 08:47:43 CDT)
Re: How to compute excluded volume using volmap? Suman Chakrabarty (Tue May 12 2009 - 07:53:12 CDT)
Alignment Andres Morales N (Mon May 11 2009 - 21:44:55 CDT)
Re: selecting waters cmhartshorn (Mon May 11 2009 - 17:31:55 CDT)
Re: selecting waters Axel Kohlmeyer (Mon May 11 2009 - 13:11:50 CDT)
Re: selecting waters Rogan Carr (Mon May 11 2009 - 12:53:28 CDT)
Re: namdenergy Peter Freddolino (Mon May 11 2009 - 12:37:07 CDT)
selecting waters Mark M Huntress (Mon May 11 2009 - 12:35:10 CDT)
Re: namdenergy BIN ZHANG (Mon May 11 2009 - 12:29:37 CDT)
Re: calculate charges of the binding site residues with psfgen Axel Kohlmeyer (Sun May 10 2009 - 07:00:29 CDT)
calculate charges of the binding site residues with psfgen Thomas Evangelidis (Sat May 09 2009 - 22:54:16 CDT)
How to compute excluded volume using volmap? Suman Chakrabarty (Sat May 09 2009 - 14:46:31 CDT)
Re: Paratool:Problems to load Hessian for charge distribution saam (Sat May 09 2009 - 08:06:00 CDT)
Paratool:Problems to load Hessian for charge distribution Sabine Leroch (Fri May 08 2009 - 11:12:05 CDT)
Re: Thiol on gold Axel Kohlmeyer (Fri May 08 2009 - 10:17:49 CDT)
Re: volmap question John Stone (Fri May 08 2009 - 09:49:33 CDT)
volmap question Jian Dai (Fri May 08 2009 - 01:22:22 CDT)
Thiol on gold KIRTANA S (Thu May 07 2009 - 23:57:48 CDT)
Re: namdenergy Peter Freddolino (Thu May 07 2009 - 22:45:00 CDT)
Re: vmd-read data from lammps Axel Kohlmeyer (Thu May 07 2009 - 21:22:51 CDT)
vmd-read data from lammps H Q (Thu May 07 2009 - 20:26:53 CDT)
namdenergy BIN ZHANG (Thu May 07 2009 - 17:26:23 CDT)
Re: BMP snapshot Eric H. Lee (Thu May 07 2009 - 14:26:24 CDT)
Re: BMP snapshot John Stone (Thu May 07 2009 - 14:24:57 CDT)
BMP snapshot Tawhid Ezaz (Thu May 07 2009 - 14:04:58 CDT)
Re: Display not updated when using move() from Python in VMD 1.8.6 Axel Kohlmeyer (Thu May 07 2009 - 10:45:00 CDT)
Re: Display not updated when using move() from Python in VMD 1.8.6 John Stone (Thu May 07 2009 - 10:19:09 CDT)
Re: Display not updated when using move() from Python in VMD 1.8.6 Axel Kohlmeyer (Thu May 07 2009 - 09:44:06 CDT)
Re: Display not updated when using move() from Python in VMD 1.8.6 Pawel Kedzierski (Thu May 07 2009 - 07:31:25 CDT)
calculate charges of the binding site residues with psfgen Thomas Evangelidis (Wed May 06 2009 - 20:19:54 CDT)
Re: Display not updated when using move() from Python in VMD 1.8.6 Axel Kohlmeyer (Wed May 06 2009 - 18:18:54 CDT)
Display not updated when using move() from Python in VMD 1.8.6 Pawel Kedzierski (Wed May 06 2009 - 13:50:47 CDT)
Re: memory allocation issue Leonardo Trabuco (Wed May 06 2009 - 13:48:12 CDT)
memory allocation issue Edward Lyman (Wed May 06 2009 - 13:37:04 CDT)
Postdoc position in computational biophysics and nanotehnology Aleksei Aksimentiev (Tue May 05 2009 - 14:28:20 CDT)
Re: Satellite tobacco mosaic virus images making by VMD Anton Arkhipov (Tue May 05 2009 - 12:48:10 CDT)
Re: Satellite tobacco mosaic virus images making by VMD John Stone (Tue May 05 2009 - 10:28:42 CDT)
Re: Selection "@myselection" John Stone (Tue May 05 2009 - 10:17:57 CDT)
Re: Satellite tobacco mosaic virus images making by VMD ÖÜÎÄ²ý (Tue May 05 2009 - 10:16:45 CDT)
Re: VMD 1.8.7beta1 doesn't close OpenGL window John Stone (Tue May 05 2009 - 09:27:10 CDT)
Re: Satellite tobacco mosaic virus images making by VMD John Stone (Tue May 05 2009 - 09:24:32 CDT)
Re: VMD 1.8.7beta1 doesn't close OpenGL window Olaf Lenz (Tue May 05 2009 - 09:07:35 CDT)
Satellite tobacco mosaic virus images making by VMD ÖÜÎÄ²ý (Tue May 05 2009 - 08:31:33 CDT)
Re: VMD 1.8.7beta1 doesn't close OpenGL window Axel Kohlmeyer (Tue May 05 2009 - 08:26:03 CDT)
VMD 1.8.7beta1 doesn't close OpenGL window Olaf Lenz (Tue May 05 2009 - 07:53:57 CDT)
Re: Solvation energies using implicit ligand sampling saam (Mon May 04 2009 - 14:31:31 CDT)
Re: Solvation energies using implicit ligand sampling Richard Daigle (Mon May 04 2009 - 14:06:22 CDT)
Re: Solvation energies using implicit ligand sampling John Stone (Mon May 04 2009 - 13:49:44 CDT)
Solvation energies using implicit ligand sampling Richard Daigle (Mon May 04 2009 - 12:21:41 CDT)
Re: autopfs: unknown atom type error when processing ATP Sasha Buzko (Sat May 02 2009 - 14:17:25 CDT)
Re: autopfs: unknown atom type error when processing ATP Peter Freddolino (Fri May 01 2009 - 22:31:52 CDT)
Re: selecting ribose atoms? Samuel Coulbourn Flores (Fri May 01 2009 - 19:59:48 CDT)
Re: selecting ribose atoms? Axel Kohlmeyer (Fri May 01 2009 - 19:48:34 CDT)
selecting ribose atoms? Samuel Coulbourn Flores (Fri May 01 2009 - 18:47:46 CDT)
Re: autopfs: unknown atom type error when processing ATP Sasha Buzko (Fri May 01 2009 - 11:39:11 CDT)
Re: VMD on Cray/CNL John Stone (Fri May 01 2009 - 10:36:23 CDT)
Re: VMD on Cray/CNL Jim Pfaendtner (Fri May 01 2009 - 07:56:02 CDT)
Re: VMD on Cray/CNL John Stone (Fri May 01 2009 - 01:20:53 CDT)
VMD on Cray/CNL Jim Pfaendtner (Fri May 01 2009 - 01:03:07 CDT)
Re: autopfs: unknown atom type error when processing ATP Peter Freddolino (Thu Apr 30 2009 - 16:52:18 CDT)
Re: autopfs: unknown atom type error when processing ATP Sasha Buzko (Thu Apr 30 2009 - 16:38:51 CDT)
Re: autopfs: unknown atom type error when processing ATP Peter Freddolino (Thu Apr 30 2009 - 16:30:30 CDT)
autopfs: unknown atom type error when processing ATP Sasha Buzko (Thu Apr 30 2009 - 16:13:41 CDT)
Selection "@myselection" Olaf Lenz (Thu Apr 30 2009 - 04:25:05 CDT)
Re: VMD 1.8.7 beta 1 posted for download... John Stone (Wed Apr 29 2009 - 22:38:21 CDT)
Re: VMD 1.8.7 beta 1 posted for download... Low Soo Mei (Wed Apr 29 2009 - 22:35:05 CDT)
Re: Size of a protein Axel Kohlmeyer (Wed Apr 29 2009 - 16:50:25 CDT)
Re: Size of a protein John Stone (Wed Apr 29 2009 - 16:15:05 CDT)
Size of a protein Khaled Barakat (Wed Apr 29 2009 - 16:06:31 CDT)
VMD 1.8.7 beta 1 posted for download... John Stone (Wed Apr 29 2009 - 15:06:27 CDT)
Re: Can the CG model built from VMD be used as an Input of NAMD,GROMACS and any other MD program? Anton Arkhipov (Tue Apr 28 2009 - 10:34:04 CDT)
Re: hydrogen bonds tcl script Axel Kohlmeyer (Tue Apr 28 2009 - 10:17:26 CDT)
hydrogen bonds tcl script politr_at_huji.ac.il (Tue Apr 28 2009 - 09:40:12 CDT)
Re: Installation issue Hugh Martin (Tue Apr 28 2009 - 09:39:29 CDT)
Re: Installation issue John Stone (Tue Apr 28 2009 - 09:29:20 CDT)
Re: Can the CG model built from VMD be used as an Input of NAMD,GROMACS and any other MD program? Axel Kohlmeyer (Tue Apr 28 2009 - 08:32:24 CDT)
Re: Manipulating dcd using script in VMD Axel Kohlmeyer (Tue Apr 28 2009 - 08:24:04 CDT)
Installation issue Hugh Martin (Tue Apr 28 2009 - 08:09:04 CDT)
Re: Manipulating dcd using script in VMD David Tanner (Tue Apr 28 2009 - 08:07:24 CDT)
Can the CG model built from VMD be used as an Input of NAMD,GROMACS and any other MD program? wuxiao (Tue Apr 28 2009 - 02:52:44 CDT)
Re: Manipulating dcd using script in VMD Eduardo Cruz-Chu (Tue Apr 28 2009 - 01:55:25 CDT)
Manipulating dcd using script in VMD DimitryASuplatov (Tue Apr 28 2009 - 01:26:05 CDT)
Re: Molefacture "namehead" error Peter Freddolino (Mon Apr 27 2009 - 20:29:31 CDT)
Molefacture "namehead" error Sebastián Gutiérrez (Mon Apr 27 2009 - 16:43:10 CDT)
Re: Calculating system net charge with tcl in VMD Eduardo Cruz-Chu (Mon Apr 27 2009 - 10:50:01 CDT)
Re: Calculating system net charge with tcl in VMD Peter Freddolino (Mon Apr 27 2009 - 07:02:18 CDT)
Re: Calculating system net charge with tcl in VMD Athanassios Stavrakoudis (Mon Apr 27 2009 - 05:12:18 CDT)
Calculating system net charge with tcl in VMD DimitryASuplatov (Mon Apr 27 2009 - 04:43:34 CDT)
Re: RMSD of a protein shell, from the NAMD traj John Stone (Sun Apr 26 2009 - 23:59:51 CDT)
Re: Using clustering tool John Stone (Sun Apr 26 2009 - 23:10:24 CDT)
Re: iTrajComp plugin. John Stone (Sun Apr 26 2009 - 23:09:29 CDT)
Re: graphics for publication Peter Freddolino (Sat Apr 25 2009 - 07:30:04 CDT)
Re: Re: graphics for publication YangMingjun (Sat Apr 25 2009 - 04:30:40 CDT)
Using clustering tool Andres Morales N (Fri Apr 24 2009 - 22:56:48 CDT)
iTrajComp plugin. Andres Morales N (Fri Apr 24 2009 - 22:23:45 CDT)
Re: Error processing bonds Gianluca Interlandi (Fri Apr 24 2009 - 14:09:59 CDT)
Re: graphics for publication Axel Kohlmeyer (Fri Apr 24 2009 - 11:26:58 CDT)
Re: Error processing bonds Gianluca Interlandi (Fri Apr 24 2009 - 11:12:31 CDT)
Re: graphics for publication Peter Freddolino (Fri Apr 24 2009 - 11:06:57 CDT)
Re: Error processing bonds Gianluca Interlandi (Fri Apr 24 2009 - 10:15:38 CDT)
graphics for publication YangMingjun (Fri Apr 24 2009 - 10:14:23 CDT)
Re: Error processing bonds Axel Kohlmeyer (Fri Apr 24 2009 - 08:42:34 CDT)
Re: sys.argv, python and VMD Michael Kreim (Fri Apr 24 2009 - 08:43:13 CDT)
Re: Error processing bonds John Stone (Fri Apr 24 2009 - 08:03:21 CDT)
Re: installed plugin won't show up next time accomp lin (Fri Apr 24 2009 - 04:59:22 CDT)
Error processing bonds Gianluca Interlandi (Fri Apr 24 2009 - 01:41:07 CDT)
Re: local packing density around a chemical group (say, a methyl group or a side chain) Leandro Martínez (Thu Apr 23 2009 - 12:22:38 CDT)
RE: local packing density around a chemical group (say, a methyl group or a side chain) Krishnan, Marimuthu (Thu Apr 23 2009 - 12:11:07 CDT)
Re: local packing density around a chemical group (say, a methyl group or a side chain) Axel Kohlmeyer (Thu Apr 23 2009 - 11:27:20 CDT)
local packing density around a chemical group (say, a methyl group or a side chain) Krishnan, Marimuthu (Thu Apr 23 2009 - 10:15:44 CDT)
Re: Select atoms using coordinates Axel Kohlmeyer (Thu Apr 23 2009 - 08:48:57 CDT)
Re: installed plugin won't show up next time Axel Kohlmeyer (Thu Apr 23 2009 - 08:45:51 CDT)
installed plugin won't show up next time accomp lin (Thu Apr 23 2009 - 06:58:38 CDT)
Re: Select atoms using coordinates Max (Thu Apr 23 2009 - 03:15:15 CDT)
Re: density profiles Eduardo (Wed Apr 22 2009 - 22:17:42 CDT)
Re: setbonds BIN ZHANG (Wed Apr 22 2009 - 14:53:11 CDT)
Re: Select atoms using coordinates John Stone (Wed Apr 22 2009 - 14:03:32 CDT)
animate read and write A D (Wed Apr 22 2009 - 15:36:00 CDT)
Re: animate read and write John Stone (Wed Apr 22 2009 - 15:42:24 CDT)
Re: Solvent Accessible Surface Area John Stone (Wed Apr 22 2009 - 14:14:01 CDT)
Re: Select atoms using coordinates J. Rui Rodrigues (Wed Apr 22 2009 - 13:52:07 CDT)
Re: density profiles BIN ZHANG (Wed Apr 22 2009 - 12:25:59 CDT)
Re: Select atoms using coordinates Rogan Carr (Wed Apr 22 2009 - 11:30:49 CDT)
Re: setbonds Rogan Carr (Wed Apr 22 2009 - 11:29:32 CDT)
density profiles Raul Araya (Wed Apr 22 2009 - 11:24:31 CDT)
Re: sys.argv, python and VMD Axel Kohlmeyer (Wed Apr 22 2009 - 10:42:58 CDT)
Select atoms using coordinates Max (Wed Apr 22 2009 - 06:09:16 CDT)
Re: pbctools on alpha version Olaf Lenz (Wed Apr 22 2009 - 06:14:42 CDT)
sys.argv, python and VMD Michael Kreim (Wed Apr 22 2009 - 03:50:59 CDT)
Re: pbctools on alpha version Dan Lussier (Wed Apr 22 2009 - 03:46:23 CDT)
Re: Re: setbonds zhngbn_at_gmail.com (Tue Apr 21 2009 - 23:48:30 CDT)
Re: setbonds John Stone (Tue Apr 21 2009 - 23:44:35 CDT)
setbonds BIN ZHANG (Tue Apr 21 2009 - 23:01:35 CDT)
Re: Secondary Structure Depiction Axel Kohlmeyer (Tue Apr 21 2009 - 14:07:41 CDT)
Re: Spaceball and OSX John Stone (Tue Apr 21 2009 - 13:49:36 CDT)
Re: Spaceball and OSX JT (Tue Apr 21 2009 - 13:15:22 CDT)
Re: Spaceball and OSX JT (Tue Apr 21 2009 - 12:53:31 CDT)
Re: Spaceball and OSX John Stone (Tue Apr 21 2009 - 12:34:34 CDT)
Spaceball and OSX JT (Tue Apr 21 2009 - 12:30:04 CDT)
Re: Secondary Structure Depiction Daniel Gaston (Tue Apr 21 2009 - 12:02:29 CDT)
Re: Secondary Structure Depiction Daniel Gaston (Tue Apr 21 2009 - 12:01:08 CDT)
Re: Secondary Structure Depiction Axel Kohlmeyer (Tue Apr 21 2009 - 11:23:10 CDT)
Re: Secondary Structure Depiction George Madalin Giambasu (Tue Apr 21 2009 - 11:12:54 CDT)
Re: Secondary Structure Depiction John Stone (Tue Apr 21 2009 - 10:51:48 CDT)
Re: Secondary Structure Depiction Daniel Gaston (Tue Apr 21 2009 - 10:29:03 CDT)
Re: Secondary Structure Depiction L. Michel Espinoza-Fonseca (Tue Apr 21 2009 - 10:33:50 CDT)
Secondary Structure Depiction Daniel Gaston (Tue Apr 21 2009 - 09:25:08 CDT)
Re: Mol representation using coordinates Rogan Carr (Tue Apr 21 2009 - 09:03:35 CDT)
Mol representation using coordinates Max (Tue Apr 21 2009 - 08:50:05 CDT)
Re: RMSD-gaps Karne, Sai Harish Babu (Mon Apr 20 2009 - 21:04:53 CDT)
Re: RMSD-gaps Daniel Gaston (Mon Apr 20 2009 - 18:57:33 CDT)
RMSD-gaps Karne, Sai Harish Babu (Mon Apr 20 2009 - 17:09:51 CDT)
Solvent Accessible Surface Area zizi moradi (Sun Apr 19 2009 - 09:01:49 CDT)
(no subject) zizi moradi (Sun Apr 19 2009 - 08:55:44 CDT)
Re: Possible bug in vmd 1.8.7 alpha? John Stone (Sat Apr 18 2009 - 17:02:20 CDT)
Re: coloring by atom type Rogan Carr (Sat Apr 18 2009 - 16:53:39 CDT)
Re: Possible bug in vmd 1.8.7 alpha? Axel Kohlmeyer (Sat Apr 18 2009 - 10:15:24 CDT)
Re: pbctools on alpha version Axel Kohlmeyer (Sat Apr 18 2009 - 10:11:47 CDT)
Re: pbctools on alpha version Olaf Lenz (Sat Apr 18 2009 - 04:18:50 CDT)
Possible bug in vmd 1.8.7 alpha? Cesar Millan (Sat Apr 18 2009 - 00:09:57 CDT)
coloring by atom type Ryan Pavlovicz (Fri Apr 17 2009 - 15:53:29 CDT)
Re: namd-l: display all frames simultaneously Samuel Coulbourn Flores èŠ±å±± (Fri Apr 17 2009 - 11:35:11 CDT)
pbctools on alpha version Dan Lussier (Fri Apr 17 2009 - 09:05:06 CDT)
Re: display all frames simultaneously Peter Freddolino (Thu Apr 16 2009 - 22:32:26 CDT)
Re: display all frames simultaneously Axel Kohlmeyer (Thu Apr 16 2009 - 22:11:12 CDT)
display all frames simultaneously Samuel Coulbourn Flores èŠ±å±± (Thu Apr 16 2009 - 21:35:59 CDT)
psf file for Doxorubicin mishacat_at_udm.ru (Thu Apr 16 2009 - 08:32:14 CDT)
Re: VRPN & PHANToM Omni John Stone (Wed Apr 15 2009 - 13:59:42 CDT)
Re: Multiseq error John Stone (Wed Apr 15 2009 - 13:57:57 CDT)
Multiseq error Karne, Sai Harish Babu (Wed Apr 15 2009 - 13:48:18 CDT)
VRPN & PHANToM Omni Mark Cunningham (Wed Apr 15 2009 - 13:40:03 CDT)
Re: Problem in finding the HBonds Axel Kohlmeyer (Wed Apr 15 2009 - 07:56:52 CDT)
RE: Problem in finding the HBonds Irene Newhouse (Wed Apr 15 2009 - 03:56:52 CDT)
Problem in finding the HBonds Manishi Pandey (Wed Apr 15 2009 - 02:50:29 CDT)
Re: Axel Kohlmeyer (Tue Apr 14 2009 - 07:25:54 CDT)
(no subject) Narasimhan LOGANATHAN (Tue Apr 14 2009 - 04:33:39 CDT)
RMSD of a protein shell, from the NAMD traj priyodorshi satpati (Sun Apr 12 2009 - 11:02:13 CDT)
Re: within, used with pbcwrap John Stone (Sat Apr 11 2009 - 09:36:08 CDT)
Re: within, used with pbcwrap Olaf Lenz (Sat Apr 11 2009 - 07:15:51 CDT)
Re: within, used with pbcwrap Neelanjana Sengupta (Sat Apr 11 2009 - 00:49:22 CDT)
building psf with CMAP, old topology remark entries still in psf Sebastian Stolzenberg (Fri Apr 10 2009 - 18:22:15 CDT)
Re: Re: Rendering electrostatic surface potentials using Tachyon John Stone (Fri Apr 10 2009 - 10:22:45 CDT)
Re: install plugin: problems with vmd_install_extension Axel Kohlmeyer (Fri Apr 10 2009 - 10:13:57 CDT)
Re: within, used with pbcwrap John Stone (Fri Apr 10 2009 - 09:14:00 CDT)
Re: install plugin: problems with vmd_install_extension Axel Kohlmeyer (Fri Apr 10 2009 - 09:10:13 CDT)
Re: within, used with pbcwrap Axel Kohlmeyer (Fri Apr 10 2009 - 09:03:36 CDT)
within, used with pbcwrap Neelanjana Sengupta (Fri Apr 10 2009 - 06:35:19 CDT)
install plugin: problems with vmd_install_extension Steve Massard (Fri Apr 10 2009 - 04:35:45 CDT)
Re: Rendering electrostatic surface potentials using Tachyon JT (Thu Apr 09 2009 - 15:14:41 CDT)
Release of R.E.D. Server FyD (Thu Apr 09 2009 - 03:31:30 CDT)
Re: about TkConsole cong chen (Wed Apr 08 2009 - 07:27:52 CDT)
Re: about TkConsole Axel Kohlmeyer (Tue Apr 07 2009 - 21:32:40 CDT)
isosurface saving question YI Zhang (Tue Apr 07 2009 - 20:41:17 CDT)
Re: about TkConsole cong chen (Tue Apr 07 2009 - 20:04:45 CDT)
Re: about TkConsole Axel Kohlmeyer (Tue Apr 07 2009 - 12:58:48 CDT)
about TkConsole cong chen (Mon Apr 06 2009 - 23:16:19 CDT)
Re: Any Mac (Intel) users still running 10.4.x??? John Stone (Mon Apr 06 2009 - 11:34:31 CDT)
Any Mac (Intel) users still running 10.4.x??? John Stone (Sun Apr 05 2009 - 10:13:08 CDT)
Re: OS X intel binary problem Axel Kohlmeyer (Sun Apr 05 2009 - 09:48:37 CDT)
Re: OS X intel binary problem John Stone (Sun Apr 05 2009 - 09:48:59 CDT)
Re: OS X intel binary problem Dan Lussier (Sun Apr 05 2009 - 09:40:26 CDT)
Re: OS X intel binary problem Axel Kohlmeyer (Sun Apr 05 2009 - 09:05:07 CDT)
Re: too many bonds Axel Kohlmeyer (Sun Apr 05 2009 - 08:57:59 CDT)
Re: too many bonds JT (Sun Apr 05 2009 - 03:06:17 CDT)
OS X intel binary problem Dan Lussier (Sun Apr 05 2009 - 03:02:20 CDT)
too many bonds Crowley, Michael (Sun Apr 05 2009 - 01:27:03 CDT)
(no subject) Crowley, Michael (Sun Apr 05 2009 - 00:48:58 CDT)
Re: ligand names Peter Freddolino (Fri Apr 03 2009 - 15:54:42 CDT)
ligand names Katherine Parra (Fri Apr 03 2009 - 10:35:54 CDT)
Re: questions about the electron density map John Stone (Fri Apr 03 2009 - 08:00:39 CDT)
questions about the electron density map YI Zhang (Fri Apr 03 2009 - 05:38:54 CDT)
Re: Problem with autoionize ? Axel Kohlmeyer (Thu Apr 02 2009 - 11:46:33 CDT)
Re: pairInteraction and NAMDEnergy Goutham (Thu Apr 02 2009 - 11:21:27 CDT)
Re: Problem with autoionize ? Kalavera_at_gmx.net (Thu Apr 02 2009 - 09:58:53 CDT)
Re: H-bonds Peter Freddolino (Thu Apr 02 2009 - 09:27:02 CDT)
Re: Problem with autoionize ? Axel Kohlmeyer (Thu Apr 02 2009 - 09:25:33 CDT)
Problem with autoionize ? Kalavera_at_gmx.net (Thu Apr 02 2009 - 08:50:49 CDT)
Re: VMD atomselect J. Rui Rodrigues (Thu Apr 02 2009 - 07:19:40 CDT)
H-bonds Bernhard Knapp (Thu Apr 02 2009 - 06:27:25 CDT)
VMD atomselect Steve Massard (Thu Apr 02 2009 - 05:57:37 CDT)
Re: pairInteraction and NAMDEnergy Peter Freddolino (Wed Apr 01 2009 - 22:49:26 CDT)
Re: pairInteraction and NAMDEnergy Goutham (Wed Apr 01 2009 - 22:43:23 CDT)
Re: pairInteraction and NAMDEnergy Peter Freddolino (Wed Apr 01 2009 - 20:12:19 CDT)
pairInteraction and NAMDEnergy Goutham (Wed Apr 01 2009 - 17:05:52 CDT)
Re: Synchronization of statements in tcl script John Stone (Wed Apr 01 2009 - 00:31:01 CDT)
RE: How to add heme to dowser plugin? Irene Newhouse (Tue Mar 31 2009 - 16:48:34 CDT)
paratool questions Lisa Brown (Tue Mar 31 2009 - 15:25:00 CDT)
pKa and Temperature in MD Caterina Bernini (Tue Mar 31 2009 - 14:47:39 CDT)
Re: helix axes Balazs Jojart (Tue Mar 31 2009 - 14:28:40 CDT)
Re: vmd cvs compilation with CUDA fails John Stone (Tue Mar 31 2009 - 14:26:31 CDT)
RE: cvs plugins do not compile because of errors in the sgsmooth.C Cojocaru,Vlad (Tue Mar 31 2009 - 13:40:47 CDT)
Re: openGL library Goutham (Tue Mar 31 2009 - 13:34:38 CDT)
Re: cvs plugins do not compile because of errors in the sgsmooth.C John Stone (Tue Mar 31 2009 - 13:34:05 CDT)
Re: openGL library John Stone (Tue Mar 31 2009 - 12:21:00 CDT)
Re: helix axes Peter Freddolino (Tue Mar 31 2009 - 12:16:57 CDT)
Re: openGL library Goutham (Tue Mar 31 2009 - 12:15:57 CDT)
Re: helix axes Thomas C. Bishop (Tue Mar 31 2009 - 12:15:00 CDT)
Re: openGL library John Stone (Tue Mar 31 2009 - 11:38:28 CDT)
Re: helix axes Goutham (Tue Mar 31 2009 - 10:30:30 CDT)
Re: helix axes Peter Freddolino (Tue Mar 31 2009 - 10:18:06 CDT)
Re: helix axes Thomas C. Bishop (Tue Mar 31 2009 - 10:08:51 CDT)
RE: helix axes Wei Huang (Tue Mar 31 2009 - 10:06:20 CDT)
Re: helix axes Peter Freddolino (Tue Mar 31 2009 - 09:51:11 CDT)
Re: helix axes Thomas C. Bishop (Tue Mar 31 2009 - 09:44:21 CDT)
helix axes Alison Grinthal (Tue Mar 31 2009 - 07:34:56 CDT)
Re: Synchronization of statements in tcl script Raluca Mihaela ANDREI (Tue Mar 31 2009 - 02:57:56 CDT)
RE: How to add heme to dowser plugin? Irene Newhouse (Mon Mar 30 2009 - 20:39:59 CDT)
Re: How to add heme to dowser plugin? Axel Kohlmeyer (Mon Mar 30 2009 - 20:24:24 CDT)
How to add heme to dowser plugin? Irene Newhouse (Mon Mar 30 2009 - 19:27:01 CDT)
Re: selection syntax Leonardo Trabuco (Mon Mar 30 2009 - 09:10:29 CDT)
Re: selection syntax Anton Arkhipov (Mon Mar 30 2009 - 09:03:47 CDT)
selection syntax Peter Jones (Mon Mar 30 2009 - 01:54:32 CDT)
Re: Graphical representation Goutham (Sun Mar 29 2009 - 15:01:50 CDT)
Re: Graphical representation Eric H. Lee (Sun Mar 29 2009 - 14:22:18 CDT)
Graphical representation Francesco Pietra (Sun Mar 29 2009 - 13:59:15 CDT)
Re: namdenergy: how set "runextcommand"? Peter Freddolino (Sat Mar 28 2009 - 19:36:45 CDT)
namdenergy: how set "runextcommand"? Sebastian Stolzenberg (Sat Mar 28 2009 - 18:59:33 CDT)
Re: Synchronization of statements in tcl script John Stone (Sat Mar 28 2009 - 14:41:52 CDT)
Synchronization of statements in tcl script Raluca Mihaela ANDREI (Fri Mar 27 2009 - 12:44:32 CDT)
Re: openGL library John Stone (Fri Mar 27 2009 - 07:53:34 CDT)
Re: openGL library Goutham (Fri Mar 27 2009 - 01:34:00 CDT)
Re: openGL library Goutham (Fri Mar 27 2009 - 00:32:34 CDT)
Re: openGL library John Stone (Thu Mar 26 2009 - 21:38:22 CDT)
Re: openGL library Axel Kohlmeyer (Thu Mar 26 2009 - 20:20:31 CDT)
openGL library Goutham (Thu Mar 26 2009 - 19:48:52 CDT)
Re: Searching for Number of Resname Roman Petrenko (Thu Mar 26 2009 - 15:28:00 CDT)
Re: Searching for Number of Resname Ocar Campos (Thu Mar 26 2009 - 15:21:28 CDT)
Re: Searching for Number of Resname Giovanni Bellesia (Thu Mar 26 2009 - 15:16:25 CDT)
Searching for Number of Resname Ocar Campos (Thu Mar 26 2009 - 14:51:44 CDT)
Re: howto select stain reveal map Axel Kohlmeyer (Thu Mar 26 2009 - 06:41:07 CDT)
howto select stain reveal map Francesco Pietra (Thu Mar 26 2009 - 02:30:29 CDT)
Re: near clip Schreiner Eduard (Wed Mar 25 2009 - 23:53:49 CDT)
Re: how to block psfgen warning messages John Stone (Wed Mar 25 2009 - 23:34:08 CDT)
Re: how to make a mivie by VMD Eric H. Lee (Wed Mar 25 2009 - 20:37:16 CDT)
Re: how to make a mivie by VMD Anton Arkhipov (Wed Mar 25 2009 - 18:00:10 CDT)
Re: merging atomselection Tomek Wlodarski (Wed Mar 25 2009 - 17:56:49 CDT)
Re: how to make a mivie by VMD Eric H. Lee (Wed Mar 25 2009 - 17:44:43 CDT)
how to make a mivie by VMD Lan He (Wed Mar 25 2009 - 17:33:41 CDT)
Re: merging atomselection Axel Kohlmeyer (Wed Mar 25 2009 - 17:20:45 CDT)
Re: how to block psfgen warning messages Axel Kohlmeyer (Wed Mar 25 2009 - 17:17:19 CDT)
merging atomselection Goutham (Wed Mar 25 2009 - 16:54:33 CDT)
how to block psfgen warning messages Thomas Evangelidis (Wed Mar 25 2009 - 16:11:12 CDT)
Rosetta Academic Training Webinar Nir London (Wed Mar 25 2009 - 11:10:34 CDT)
Re: Command line argument Axel Kohlmeyer (Wed Mar 25 2009 - 10:57:22 CDT)
Command line argument Goutham (Wed Mar 25 2009 - 10:12:19 CDT)
Re: External renderer not rendering colors from volumetric data John Stone (Wed Mar 25 2009 - 09:38:18 CDT)
Re: External renderer not rendering colors from volumetric data Michael Geoffrey Klein (Wed Mar 25 2009 - 09:35:25 CDT)
External renderer not rendering colors from volumetric data Höfling Martin (Wed Mar 25 2009 - 08:34:24 CDT)
Re: vmd_plot Axel Kohlmeyer (Wed Mar 25 2009 - 07:47:14 CDT)
vmd_plot Francesco Pietra (Wed Mar 25 2009 - 06:16:36 CDT)
Re: near clip John Stone (Fri Mar 20 2009 - 14:53:20 CDT)
Re: near clip Leandro Martínez (Fri Mar 20 2009 - 14:28:53 CDT)
Re: GTP topology file Peter Freddolino (Fri Mar 20 2009 - 12:03:01 CDT)
Re: near clip John Stone (Fri Mar 20 2009 - 11:52:39 CDT)
GTP topology file tiziano gallo cassarino (Fri Mar 20 2009 - 08:54:12 CDT)
near clip Leandro Martínez (Fri Mar 20 2009 - 07:48:51 CDT)
VMD 1.8.7 alpha 62 posted for all mainstream platforms... John Stone (Fri Mar 20 2009 - 03:30:48 CDT)
Re: Posting messages to VMD-L truncates the empty spaces in lines Rogan Carr (Wed Mar 18 2009 - 16:12:37 CDT)
accessing values for selection keywords Nadja Lederer (Wed Mar 18 2009 - 05:48:43 CDT)
accessing values for selection keywords Nadja Lederer (Wed Mar 18 2009 - 05:25:54 CDT)
Re: Posting messages to VMD-L truncates the empty spaces in lines JT (Tue Mar 17 2009 - 22:05:43 CDT)
Re: building VMD on LINUX John Stone (Tue Mar 17 2009 - 10:03:16 CDT)
Re: building VMD on LINUX Axel Kohlmeyer (Tue Mar 17 2009 - 08:58:38 CDT)
building VMD on LINUX Raluca Mihaela ANDREI (Tue Mar 17 2009 - 06:51:51 CDT)
Re: Posting messages to VMD-L truncates the empty spaces in lines John Stone (Mon Mar 16 2009 - 20:41:58 CDT)
Re: Posting messages to VMD-L truncates the empty spaces in lines JT (Mon Mar 16 2009 - 20:31:09 CDT)
Re: Re: superimpose two proteins John Stone (Mon Mar 16 2009 - 19:15:00 CDT)
Re: superimpose two proteins Taufik Al-Sarraj (Mon Mar 16 2009 - 18:09:38 CDT)
Re: Posting messages to VMD-L truncates the empty spaces in lines John Stone (Mon Mar 16 2009 - 17:49:34 CDT)
Re: Taufik Al-Sarraj (Mon Mar 16 2009 - 17:01:26 CDT)
superimpose two proteins Taufik Al-Sarraj (Mon Mar 16 2009 - 15:39:26 CDT)
paratool tutorial/ complete user guide Lisa Brown (Mon Mar 16 2009 - 14:43:49 CDT)
VMD needs your vote. Nir London (Mon Mar 16 2009 - 12:21:07 CDT)
Posting messages to VMD-L truncates the empty spaces in lines JT (Sun Mar 15 2009 - 18:58:01 CDT)
Re: rlwrap bug in Ubuntu Axel Kohlmeyer (Sun Mar 15 2009 - 15:14:45 CDT)
Re: Problem with the script mono2poly.tcl John Stone (Sun Mar 15 2009 - 14:22:19 CDT)
Re: Problem with the script mono2poly.tcl Fabio Trovato (Sat Mar 14 2009 - 04:56:17 CDT)
Re: rlwrap bug in Ubuntu John Stone (Sun Mar 15 2009 - 14:20:26 CDT)
Re: rlwrap bug in Ubuntu Axel Kohlmeyer (Sun Mar 15 2009 - 09:32:49 CDT)
Re: rlwrap bug in Ubuntu John Stone (Sun Mar 15 2009 - 09:32:06 CDT)
rlwrap bug in Ubuntu Thomas Evangelidis (Sun Mar 15 2009 - 01:11:30 CDT)
Re: how to find the sign of the dihedral angle (full message). JT (Sat Mar 14 2009 - 03:21:33 CDT)
how to find the sign of the dihedral angle (full message). karthigeyan karthigeyantp (Sat Mar 14 2009 - 00:23:47 CDT)
Re: isosurface from pdb with beta field Peter Freddolino (Fri Mar 13 2009 - 20:26:06 CDT)
isosurface from pdb with beta field Peter Varnai (Fri Mar 13 2009 - 16:09:33 CDT)
Re: Problem with the script mono2poly.tcl John Stone (Fri Mar 13 2009 - 12:36:37 CDT)
Problem with the script mono2poly.tcl Fabio Trovato (Fri Mar 13 2009 - 11:46:44 CDT)
Re: regarding draw_arrow.tcl Falgun Shah (Fri Mar 13 2009 - 10:40:47 CDT)
Re: regarding draw_arrow.tcl John Stone (Fri Mar 13 2009 - 10:14:21 CDT)
Re: regarding draw_arrow.tcl Axel Kohlmeyer (Fri Mar 13 2009 - 09:51:23 CDT)
Re: regarding draw_arrow.tcl Falgun Shah (Fri Mar 13 2009 - 08:56:31 CDT)
Re: Display issue on VMD for Linux John Stone (Thu Mar 12 2009 - 17:02:21 CDT)
Re: Display issue on VMD for Linux Samuel Coulbourn Flores èŠ±å±± (Thu Mar 12 2009 - 16:54:11 CDT)
Re: color update for xyz trajectory John Stone (Thu Mar 12 2009 - 14:57:03 CDT)
color update for xyz trajectory Tawhid Ezaz (Thu Mar 12 2009 - 14:52:14 CDT)
Re: question of iso-surface in VMD graphical representations HeeSung Choi (Thu Mar 12 2009 - 14:13:42 CDT)
Re: question of iso-surface in VMD graphical representations John Stone (Thu Mar 12 2009 - 13:17:23 CDT)
question of iso-surface in VMD graphical representations HeeSung Choi (Thu Mar 12 2009 - 13:04:01 CDT)
Re: Script problem Peter Freddolino (Thu Mar 12 2009 - 07:07:14 CDT)
Re: Script problem J. Rui Rodrigues (Thu Mar 12 2009 - 07:01:30 CDT)
Re: Script problem J. Rui Rodrigues (Thu Mar 12 2009 - 06:16:17 CDT)
Script problem Christopher Hartshorn (Thu Mar 12 2009 - 03:40:50 CDT)
pops/popc lipid bilayer Jianping Lin (Wed Mar 11 2009 - 19:32:42 CDT)
Re: charmm binary ele. pot. John Stone (Wed Mar 11 2009 - 14:45:06 CDT)
Re: charmm binary ele. pot. John Stone (Wed Mar 11 2009 - 13:55:37 CDT)
Re: regarding draw_arrow.tcl Axel Kohlmeyer (Wed Mar 11 2009 - 11:30:30 CDT)
Re: obj export John Stone (Wed Mar 11 2009 - 11:15:23 CDT)
Re: obj export Raluca Mihaela ANDREI (Wed Mar 11 2009 - 10:55:03 CDT)
Re: regarding draw_arrow.tcl John Stone (Wed Mar 11 2009 - 10:36:05 CDT)
Re: How to use " segment " in tcl script. Axel Kohlmeyer (Wed Mar 11 2009 - 10:15:05 CDT)
Re: obj export John Stone (Wed Mar 11 2009 - 10:15:18 CDT)
Re: obj export Raluca Mihaela ANDREI (Wed Mar 11 2009 - 10:04:07 CDT)
How to use " segment " in tcl script. accomp lin (Wed Mar 11 2009 - 01:31:13 CDT)
RE: problem with Dowser Irene Newhouse (Wed Mar 11 2009 - 00:59:08 CDT)
Re: problem with Dowser Leonardo Trabuco (Tue Mar 10 2009 - 22:41:52 CDT)
Re: vmd crashes John Stone (Tue Mar 10 2009 - 21:58:40 CDT)
Re: obj export John Stone (Tue Mar 10 2009 - 21:56:21 CDT)
Re: obj export John Stone (Tue Mar 10 2009 - 12:01:10 CDT)
Re: obj export Axel Kohlmeyer (Tue Mar 10 2009 - 10:25:07 CDT)
Re: obj export Raluca Mihaela ANDREI (Tue Mar 10 2009 - 10:02:01 CDT)
Re: obj export Axel Kohlmeyer (Tue Mar 10 2009 - 09:24:01 CDT)
obj export Raluca Mihaela ANDREI (Tue Mar 10 2009 - 03:27:40 CDT)
Re: vmd crashes bo baker (Mon Mar 09 2009 - 19:09:59 CDT)
regarding draw_arrow.tcl Falgun Shah (Mon Mar 09 2009 - 17:55:58 CDT)
Re: charmm binary ele. pot. Axel Kohlmeyer (Mon Mar 09 2009 - 13:59:25 CDT)
Re: charmm binary ele. pot. Bogdan Costescu (Mon Mar 09 2009 - 13:16:00 CDT)
<please insert a decent subject here next time, thanks> Axel Kohlmeyer (Mon Mar 09 2009 - 12:08:49 CDT)
Re: charmm binary ele. pot. Axel Kohlmeyer (Mon Mar 09 2009 - 11:57:21 CDT)
Re: charmm binary ele. pot. John Stone (Mon Mar 09 2009 - 09:45:56 CDT)
Re: the scripting interface John Stone (Mon Mar 09 2009 - 09:43:16 CDT)
Re: vmd crashes John Stone (Mon Mar 09 2009 - 09:36:56 CDT)
(no subject) Leonhard Henkes (Mon Mar 09 2009 - 07:08:32 CDT)
vmd crashes bo baker (Mon Mar 09 2009 - 04:49:42 CDT)
motion correlation map Falgun Shah (Sun Mar 08 2009 - 12:41:18 CDT)
charmm binary ele. pot. Jure Praznikar (Sun Mar 08 2009 - 11:36:47 CDT)
Re: correlation Axel Kohlmeyer (Sun Mar 08 2009 - 10:33:03 CDT)
the scripting interface Dawn (Sun Mar 08 2009 - 10:00:19 CDT)
correlation Dawn (Sun Mar 08 2009 - 03:05:49 CDT)
RE: problem with Dowser Irene Newhouse (Sun Mar 08 2009 - 00:55:03 CST)
Re: problem with Dowser Axel Kohlmeyer (Sat Mar 07 2009 - 20:18:42 CST)
Re: problem with Dowser Leonardo Trabuco (Sat Mar 07 2009 - 20:07:47 CST)
problem with Dowser Irene Newhouse (Sat Mar 07 2009 - 19:50:35 CST)
Save thousands... no one will know Olivia Reilly (Sat Mar 07 2009 - 11:23:52 CST)
Your C0deine 0rder #247424 Fran Villa (Fri Mar 06 2009 - 19:51:11 CST)
Charm force field for POPS lipid Jianping Lin (Fri Mar 06 2009 - 15:56:34 CST)
Re: adding lipid bilayers Goutham (Fri Mar 06 2009 - 08:38:25 CST)
Re: adding lipid bilayers Ramya Gamini (Fri Mar 06 2009 - 02:06:17 CST)
adding lipid bilayers Goutham (Fri Mar 06 2009 - 00:46:47 CST)
Re: problem while integrating bigdcd into a namespace John Stone (Thu Mar 05 2009 - 22:36:23 CST)
use of spring tcl script Falgun Shah (Thu Mar 05 2009 - 20:49:30 CST)
Re: Hydrophobicity Scale Ramya Gamini (Thu Mar 05 2009 - 20:36:34 CST)
Re: Hydrophobicity Scale Ramya Gamini (Thu Mar 05 2009 - 20:20:42 CST)
Re: Hydrophobicity Scale Goutham (Thu Mar 05 2009 - 19:36:46 CST)
Script for calculating hydrogen-bonding energy Jianping Lin (Thu Mar 05 2009 - 19:19:28 CST)
Re: Hydrophobicity Scale John Stone (Thu Mar 05 2009 - 19:17:49 CST)
Hydrophobicity Scale Goutham (Thu Mar 05 2009 - 18:58:41 CST)
Re: script to resolve trajectory "jumps" on Desmond dynamic Peter Freddolino (Thu Mar 05 2009 - 10:43:18 CST)
Re: selection by residue Nicolas (Thu Mar 05 2009 - 10:34:05 CST)
RE: script to resolve trajectory "jumps" on Desmond dynamic Nicola Giacche' (Thu Mar 05 2009 - 09:01:08 CST)
Re: selection by residue Marius Retegan (Thu Mar 05 2009 - 08:29:28 CST)
selection by residue Marius Retegan (Thu Mar 05 2009 - 06:47:53 CST)
Seventh European Workshop in Drug Design - Siena Lucilla Angeli (Thu Mar 05 2009 - 06:42:36 CST)
Re: Display issue on VMD for Linux Axel Kohlmeyer (Wed Mar 04 2009 - 21:55:04 CST)
Display issue on VMD for Linux Samuel Coulbourn Flores èŠ±å±± (Wed Mar 04 2009 - 19:43:59 CST)
Re: How to convert DCD file into Amber trajectory file in vmd Jianping Lin (Wed Mar 04 2009 - 11:41:14 CST)
RE: script to resolve trajectory "jumps" on Desmond dynamic Brittany Morgan (Wed Mar 04 2009 - 11:21:13 CST)
script to resolve trajectory "jumps" on Desmond dynamic Nicola Giacche' (Wed Mar 04 2009 - 10:15:03 CST)
RE: Problem in IMD with Compiled VMD Amr Rizq (Wed Mar 04 2009 - 09:20:20 CST)
RE: Problem in IMD with Compiled VMD Amr Rizq (Wed Mar 04 2009 - 08:55:33 CST)
Re: Problem in IMD with Compiled VMD Axel Kohlmeyer (Wed Mar 04 2009 - 08:55:24 CST)
Re: Problem in IMD with Compiled VMD John Stone (Wed Mar 04 2009 - 08:34:37 CST)
Re: OpenGL Window Axel Kohlmeyer (Wed Mar 04 2009 - 07:55:24 CST)
Problem in IMD with Compiled VMD Amr Rizq (Wed Mar 04 2009 - 06:00:58 CST)
OpenGL Window Max (Wed Mar 04 2009 - 05:16:54 CST)
Re: images for publication Falgun Shah (Wed Mar 04 2009 - 00:20:59 CST)
Re: images for publication John Stone (Wed Mar 04 2009 - 00:11:11 CST)
Re: images for publication Falgun Shah (Wed Mar 04 2009 - 00:06:27 CST)
Re: images for publication John Stone (Tue Mar 03 2009 - 23:49:42 CST)
Re: volmap masks John Stone (Tue Mar 03 2009 - 22:19:47 CST)
Re: How to convert DCD file into Amber trajectory file in vmd John Stone (Tue Mar 03 2009 - 18:35:31 CST)
How to convert DCD file into Amber trajectory file in vmd Jianping Lin (Tue Mar 03 2009 - 17:30:33 CST)
Re: Outline rendering style with Tachyon Nicolas (Tue Mar 03 2009 - 16:04:17 CST)
Re: John Stone (Tue Mar 03 2009 - 15:42:19 CST)
RE: Irene Newhouse (Tue Mar 03 2009 - 15:37:48 CST)
Re: John Stone (Tue Mar 03 2009 - 14:58:22 CST)
RE: Irene Newhouse (Tue Mar 03 2009 - 14:55:11 CST)
Re: images for publication John Stone (Tue Mar 03 2009 - 14:51:18 CST)
Re: Outline rendering style with Tachyon John Stone (Tue Mar 03 2009 - 14:48:32 CST)
Re: displaying residues within 5 A of ligand in vmd John Stone (Tue Mar 03 2009 - 10:25:12 CST)
displaying residues within 5 A of ligand in vmd Falgun Shah (Tue Mar 03 2009 - 09:53:29 CST)
Outline rendering style with Tachyon Heikki Kasnanen (Tue Mar 03 2009 - 02:20:08 CST)
Re: select atoms Axel Kohlmeyer (Mon Mar 02 2009 - 20:24:55 CST)
Re: select atoms bo baker (Mon Mar 02 2009 - 18:30:29 CST)
Re: wrong bonds during loading pdb file(protein plus lipids) John Stone (Mon Mar 02 2009 - 11:15:27 CST)
Re: select atoms Joaquim Rui Rodrigues (Mon Mar 02 2009 - 04:57:41 CST)
Re: rmsd computation in text mode with a reference pdb Leonardo Trabuco (Mon Mar 02 2009 - 01:42:38 CST)
rmsd computation in text mode with a reference pdb Monika Sharma (Mon Mar 02 2009 - 01:18:30 CST)
select atoms bo baker (Sun Mar 01 2009 - 22:18:42 CST)
images for publication Falgun Shah (Sun Mar 01 2009 - 15:23:12 CST)
Re: Help: Installation Problem Lee Amy (Sun Mar 01 2009 - 05:41:39 CST)
Re: delete residues from trajectory Schreiner Eduard (Sun Mar 01 2009 - 01:14:53 CST)
Re: delete residues from trajectory bo baker (Sat Feb 28 2009 - 23:06:17 CST)
paratool: gaussian output error Falgun Shah (Sat Feb 28 2009 - 17:15:25 CST)
Re: Help: Installation Problem Axel Kohlmeyer (Sat Feb 28 2009 - 07:45:27 CST)
Re: Help: Installation Problem Lee Amy (Sat Feb 28 2009 - 05:19:46 CST)
delete residues from trajectory bo baker (Sat Feb 28 2009 - 03:46:20 CST)
delete residues from trajectory bo baker (Sat Feb 28 2009 - 03:44:06 CST)
Re: wrong bonds during loading pdb file(protein plus lipids) Axel Kohlmeyer (Fri Feb 27 2009 - 22:01:19 CST)
Re: wrong bonds during loading pdb file(protein plus lipids) Nikolay Simakov (Fri Feb 27 2009 - 21:24:13 CST)
Re: wrong bonds during loading pdb file(protein plus lipids) Axel Kohlmeyer (Fri Feb 27 2009 - 20:47:32 CST)
Re: wrong bonds during loading pdb file(protein plus lipids) Nikolay Simakov (Fri Feb 27 2009 - 20:07:52 CST)
Re: vmd error related to opengl John Stone (Fri Feb 27 2009 - 18:15:37 CST)
vmd error related to opengl FyD (Fri Feb 27 2009 - 18:12:02 CST)
Re: John Stone (Fri Feb 27 2009 - 18:03:40 CST)
Re: wrong bonds during loading pdb file(protein plus lipids) John Stone (Fri Feb 27 2009 - 16:23:19 CST)
problem while integrating bigdcd into a namespace Thomas Evangelidis (Fri Feb 27 2009 - 16:19:03 CST)
wrong bonds during loading pdb file(protein plus lipids) Nikolay Simakov (Fri Feb 27 2009 - 16:01:30 CST)
Re: Axel Kohlmeyer (Fri Feb 27 2009 - 14:48:42 CST)
(no subject) Irene Newhouse (Fri Feb 27 2009 - 14:08:30 CST)
Re: MM/PBSA in VMD L. Michel Espinoza-Fonseca (Fri Feb 27 2009 - 06:49:43 CST)
Re: draw command with different material John Stone (Thu Feb 26 2009 - 23:46:09 CST)
draw command with different material BIN ZHANG (Thu Feb 26 2009 - 23:31:08 CST)
proline trans to cis Roman Petrenko (Thu Feb 26 2009 - 19:20:07 CST)
Re: Does command "animate delete all" free memory? Fred (Rui FENG) (Thu Feb 26 2009 - 17:00:49 CST)
Re: Does command "animate delete all" free memory? John Stone (Thu Feb 26 2009 - 16:48:58 CST)
Re: Does command "animate delete all" free memory? Fred (Rui FENG) (Thu Feb 26 2009 - 15:57:56 CST)
Re: Displaying local water molecules throughout trajectory Axel Kohlmeyer (Thu Feb 26 2009 - 15:20:50 CST)
Re: Does command "animate delete all" free memory? John Stone (Thu Feb 26 2009 - 15:16:44 CST)
Does command "animate delete all" free memory? Fred (Rui FENG) (Thu Feb 26 2009 - 15:00:53 CST)
Re: Displaying local water molecules throughout trajectory John Stone (Thu Feb 26 2009 - 14:53:56 CST)
Displaying local water molecules throughout trajectory ben rodriguez (Thu Feb 26 2009 - 14:47:26 CST)
Re: Weighted RMS fit bug John Stone (Thu Feb 26 2009 - 14:25:06 CST)
Weighted RMS fit bug Jumper, John (Thu Feb 26 2009 - 12:21:15 CST)
MM/PBSA in VMD Jianping Lin (Thu Feb 26 2009 - 12:12:46 CST)
Re: Help: Installation Problem Axel Kohlmeyer (Thu Feb 26 2009 - 10:57:30 CST)
Help: Installation Problem Lee Amy (Wed Feb 25 2009 - 09:45:12 CST)
Re: to get angle from matrix of rotation around an axis Yinglong Miao (Wed Feb 25 2009 - 15:45:53 CST)
Re: to get angle from matrix of rotation around an axis John Stone (Wed Feb 25 2009 - 15:37:47 CST)
Re: namd-l: charm27 forcefield_topology Peter Freddolino (Wed Feb 25 2009 - 15:09:23 CST)
Re: question about "measure dihed" with COM points Hwankyu Lee (Wed Feb 25 2009 - 14:55:39 CST)
to get angle from matrix of rotation around an axis Yinglong Miao (Wed Feb 25 2009 - 14:55:27 CST)
Re: question about "measure dihed" with COM points J T (Wed Feb 25 2009 - 14:43:01 CST)
volmap masks Dan Willenbring (Wed Feb 25 2009 - 14:17:32 CST)
RE: question about "measure dihed" with COM points Lee, Hwan Kyu (NIH/NHLBI) [E] (Wed Feb 25 2009 - 13:35:07 CST)
RE: question about "measure dihed" with COM points Lee, Hwan Kyu (NIH/NHLBI) [E] (Wed Feb 25 2009 - 12:55:38 CST)
Re: embed VMD in web page Axel Kohlmeyer (Wed Feb 25 2009 - 12:03:34 CST)
embed VMD in web page Xunlei Wu (Wed Feb 25 2009 - 11:21:39 CST)
charm27 forcefield_topology Falgun Shah (Wed Feb 25 2009 - 11:02:02 CST)
Re: question about "measure dihed" with COM points J T (Tue Feb 24 2009 - 21:37:21 CST)
Re: question about "measure dihed" with COM points Axel Kohlmeyer (Tue Feb 24 2009 - 19:51:15 CST)
question about "measure dihed" with COM points Lee, Hwan Kyu (NIH/NHLBI) [E] (Tue Feb 24 2009 - 19:09:27 CST)
Re: Test Katherine Parra (Tue Feb 24 2009 - 10:01:41 CST)
Re: Test John Stone (Tue Feb 24 2009 - 08:59:26 CST)
Test Lee Amy (Tue Feb 24 2009 - 07:48:25 CST)
Re: vmd intel compiler prebuild for 64 bit John Stone (Tue Feb 24 2009 - 00:54:55 CST)
Re: Membrane builder ?'s John Stone (Tue Feb 24 2009 - 00:06:40 CST)
info for computational chemistry awards, please forward Carlos Simmerling (Fri Feb 20 2009 - 10:22:27 CST)
Re: Adding a Water Box Axel Kohlmeyer (Mon Feb 23 2009 - 19:00:55 CST)
Adding a Water Box Mohamed Seyam (Mon Feb 23 2009 - 17:36:14 CST)
FATAL ERROR: ABNORMAL EOF FOUND - buffer=*0 0* Chuck (Mon Feb 23 2009 - 15:52:05 CST)
Re: Is there a way to add custormized representation method to VMD John Stone (Mon Feb 23 2009 - 15:04:06 CST)
Re: transparent background John Stone (Mon Feb 23 2009 - 15:01:32 CST)
Re: Can you show me an example of the .xyz file that is used to calculate the IR spectrum Axel Kohlmeyer (Mon Feb 23 2009 - 14:46:18 CST)
Can you show me an example of the .xyz file that is used to calculate the IR spectrum Shuo Li (Mon Feb 23 2009 - 14:05:15 CST)
Membrane builder ?'s Christopher Hartshorn (Mon Feb 23 2009 - 13:09:16 CST)
Re: multiple colors for a single atom BIN ZHANG (Mon Feb 23 2009 - 11:55:48 CST)
Re: passing arguments to a vmd script which is executed using play or source Axel Kohlmeyer (Mon Feb 23 2009 - 10:20:55 CST)
Re: passing arguments to a vmd script which is executed using play or source maria goranovic (Mon Feb 23 2009 - 09:19:24 CST)
Re: passing arguments to a vmd script which is executed using play or source Axel Kohlmeyer (Mon Feb 23 2009 - 09:15:44 CST)
Re: passing arguments to a vmd script which is executed using play or source Axel Kohlmeyer (Mon Feb 23 2009 - 09:08:58 CST)
Re: multiple colors for a single atom John Stone (Mon Feb 23 2009 - 09:06:43 CST)
passing arguments to a vmd script which is executed using play or source mariagoranovic_at_gmail.com (Mon Feb 23 2009 - 04:24:14 CST)
multiple colors for a single atom BIN ZHANG (Mon Feb 23 2009 - 00:05:50 CST)
Is there a way to add custormized representation method to VMD Yang, Shaorui (Sun Feb 22 2009 - 22:42:19 CST)
Re: VMD exits immediately after starting on Windows xp John Stone (Sun Feb 22 2009 - 17:44:19 CST)
VMD exits immediately after starting on Windows xp Robert Mullen (Sun Feb 22 2009 - 17:35:46 CST)
Re: a way to create a nice image Axel Kohlmeyer (Sun Feb 22 2009 - 11:16:17 CST)
Re: a way to create a nice image politr_at_huji.ac.il (Sun Feb 22 2009 - 10:52:01 CST)
Re: a way to create a nice image politr_at_huji.ac.il (Sun Feb 22 2009 - 10:51:35 CST)
Re: a way to create a nice image Axel Kohlmeyer (Sat Feb 21 2009 - 11:03:44 CST)
a way to create a nice image politr_at_huji.ac.il (Sat Feb 21 2009 - 08:36:44 CST)
Re: transparent background FX (Fri Feb 20 2009 - 18:52:47 CST)
Re: transparent background John Stone (Fri Feb 20 2009 - 18:14:32 CST)
Re: transparent background Axel Kohlmeyer (Fri Feb 20 2009 - 14:39:17 CST)
transparent background James Rustad (Fri Feb 20 2009 - 13:55:55 CST)
Re: converting trajectory files with catdcd in command line Axel Kohlmeyer (Fri Feb 20 2009 - 08:02:38 CST)
converting trajectory files with catdcd in command line Luciano Costa (Fri Feb 20 2009 - 06:31:00 CST)
Re: creating videos where the representation changes throughout John Stone (Thu Feb 19 2009 - 23:45:17 CST)
creating videos where the representation changes throughout Brian Kidd (Thu Feb 19 2009 - 23:30:20 CST)
vmd intel compiler prebuild for 64 bit Roman Petrenko (Thu Feb 19 2009 - 19:29:09 CST)
Re: Unrecognized Chains in VMD for tetrameric protein John Stone (Thu Feb 19 2009 - 18:57:54 CST)
Unrecognized Chains in VMD for tetrameric protein ben rodriguez (Thu Feb 19 2009 - 18:14:55 CST)
Re: helicity score? BIN ZHANG (Thu Feb 19 2009 - 15:14:45 CST)
SMD question Edward Lyman (Thu Feb 19 2009 - 14:00:32 CST)
Re: helicity score? Suman Chakrabarty (Thu Feb 19 2009 - 12:27:25 CST)
Re: "pbcwithin" keyword Axel Kohlmeyer (Thu Feb 19 2009 - 11:00:48 CST)
"pbcwithin" keyword Thomas Evangelidis (Thu Feb 19 2009 - 09:29:37 CST)
Re: error messages "*** glibc detected *** free(): invalid pointer" John Stone (Wed Feb 18 2009 - 17:43:14 CST)
Re: error messages "*** glibc detected *** free(): invalid pointer" Yinglong Miao (Wed Feb 18 2009 - 17:32:26 CST)
Re: error messages "*** glibc detected *** free(): invalid pointer" John Stone (Wed Feb 18 2009 - 09:44:02 CST)
Re: making .psf file based on .gro or .pdb John Stone (Tue Feb 17 2009 - 19:04:22 CST)
making .psf file based on .gro or .pdb Hideya Nakamura (Tue Feb 17 2009 - 18:19:18 CST)
Re: vmd with cuda1.0 Roman Petrenko (Mon Feb 16 2009 - 22:25:44 CST)
Re: vmd with cuda1.0 John Stone (Mon Feb 16 2009 - 22:23:18 CST)
Re: vmd with cuda1.0 Roman Petrenko (Mon Feb 16 2009 - 22:07:30 CST)
Re: vmd with cuda1.0 John Stone (Mon Feb 16 2009 - 21:56:04 CST)
vmd with cuda1.0 Roman Petrenko (Mon Feb 16 2009 - 21:47:16 CST)
Re: change cylinder surface properties Axel Kohlmeyer (Mon Feb 16 2009 - 18:29:11 CST)
Re: Cannot read MSMS facet file BIN ZHANG (Mon Feb 16 2009 - 17:05:31 CST)
Re: error messages "*** glibc detected *** free(): invalid pointer" John Stone (Mon Feb 16 2009 - 13:14:31 CST)
Re: error messages "*** glibc detected *** free(): invalid pointer" Yinglong Miao (Mon Feb 16 2009 - 12:44:16 CST)
Re: error messages "*** glibc detected *** free(): invalid pointer" Axel Kohlmeyer (Mon Feb 16 2009 - 12:26:19 CST)
Re: error messages "*** glibc detected *** free(): invalid pointer" Yinglong Miao (Mon Feb 16 2009 - 12:10:11 CST)
Re: error messages "*** glibc detected *** free(): invalid pointer" John Stone (Mon Feb 16 2009 - 11:54:45 CST)
Re: error messages "*** glibc detected *** free(): invalid pointer" Yinglong Miao (Mon Feb 16 2009 - 11:51:38 CST)
Re: error messages "*** glibc detected *** free(): invalid pointer" John Stone (Mon Feb 16 2009 - 11:43:44 CST)
change cylinder surface properties Peter Varnai (Mon Feb 16 2009 - 11:42:13 CST)
error messages "*** glibc detected *** free(): invalid pointer" Yinglong Miao (Mon Feb 16 2009 - 11:23:32 CST)
Re: Cannot read MSMS facet file John Stone (Mon Feb 16 2009 - 00:27:26 CST)
Re: The display windows is out of my screen G.H. Zuo (Mon Feb 16 2009 - 00:23:10 CST)
Cannot read MSMS facet file BIN ZHANG (Sun Feb 15 2009 - 23:54:52 CST)
Re: installation Fernanda S. (Sun Feb 15 2009 - 13:32:20 CST)
Re: about measuring volume of the binding site John Stone (Sun Feb 15 2009 - 12:59:15 CST)
Re: The display windows is out of my screen John Stone (Sun Feb 15 2009 - 12:57:36 CST)
Re: installation John Stone (Sun Feb 15 2009 - 12:54:29 CST)
Re: installation Axel Kohlmeyer (Sun Feb 15 2009 - 12:46:34 CST)
Re: installation Fernanda S. (Sun Feb 15 2009 - 08:05:10 CST)
The display windows is out of my screen G.H. Zuo (Sun Feb 15 2009 - 00:21:05 CST)
No 'xterm' needed for next VMD... Was Re: installation John Stone (Sat Feb 14 2009 - 19:37:26 CST)
Re: installation John Stone (Sat Feb 14 2009 - 19:34:29 CST)
Re: installation Fernanda S. (Sat Feb 14 2009 - 17:18:57 CST)
Re: Atom distances from trajotory bo baker (Sat Feb 14 2009 - 17:16:27 CST)
about measuring volume of the binding site Falgun Shah (Sat Feb 14 2009 - 15:58:14 CST)
Re: installation John Stone (Sat Feb 14 2009 - 14:32:53 CST)
Re: Atom distances from trajotory Peter Freddolino (Sat Feb 14 2009 - 08:01:53 CST)
Membrane Proteins Tutorial Marcos Sotomayor (Fri Feb 13 2009 - 16:25:15 CST)
Re: Atom distances from trajotory Peter Freddolino (Fri Feb 13 2009 - 09:33:01 CST)
Re: problem Barbault Florent (Fri Feb 13 2009 - 05:24:39 CST)
Re: installation Ramon Crehuet (Fri Feb 13 2009 - 05:08:51 CST)
Atom distances from trajotory bo baker (Thu Feb 12 2009 - 23:50:21 CST)
Re: Problem when labeling atoms on machine with intel X4500HD integreted graphic card John Stone (Thu Feb 12 2009 - 15:46:21 CST)
Problem when labeling atoms on machine with intel X4500HD integreted graphic card Shi, Chuanyin (Thu Feb 12 2009 - 15:25:45 CST)
Re: installation John Stone (Thu Feb 12 2009 - 13:40:02 CST)
installation Fernanda S. (Thu Feb 12 2009 - 13:08:19 CST)
RE: Load multiple files Bishop, Thomas C (Thu Feb 12 2009 - 11:18:57 CST)
RE: Load multiple files Andres Morales N (Thu Feb 12 2009 - 08:59:39 CST)
Re: Load multiple files John Stone (Thu Feb 12 2009 - 08:36:11 CST)
Re: Atom distances from trajotory Peter Freddolino (Thu Feb 12 2009 - 07:40:14 CST)
Re: Atomselect in NAMD GUI Peter Freddolino (Thu Feb 12 2009 - 06:21:11 CST)
Atom distances from trajotory bo baker (Thu Feb 12 2009 - 03:27:20 CST)
Load multiple files bo baker (Wed Feb 11 2009 - 22:43:35 CST)
Re: Atomselect in NAMD GUI bo baker (Wed Feb 11 2009 - 16:01:37 CST)
Re: problem Paulo E. Abreu (Wed Feb 11 2009 - 11:00:15 CST)
Re: problem Axel Kohlmeyer (Wed Feb 11 2009 - 09:01:42 CST)
problem Barbault Florent (Wed Feb 11 2009 - 02:41:52 CST)
Re: Flow Fields Axel Kohlmeyer (Tue Feb 10 2009 - 16:53:19 CST)
Re: Flow Fields John Stone (Tue Feb 10 2009 - 16:28:08 CST)
Flow Fields Roland Schulz (Tue Feb 10 2009 - 16:04:23 CST)
Re: How to specify processors for running VMD on a cluster? Axel Kohlmeyer (Tue Feb 10 2009 - 15:35:46 CST)
Re: How to specify processors for running VMD on a cluster? Axel Kohlmeyer (Tue Feb 10 2009 - 12:24:58 CST)
How to specify processors for running VMD on a cluster? Yinglong Miao (Tue Feb 10 2009 - 10:45:27 CST)
Re: problem with "measure fit " John Stone (Mon Feb 09 2009 - 16:41:32 CST)
Re: Equivalent Mouse Capabilities to Tracker CAVELib John Stone (Mon Feb 09 2009 - 15:24:34 CST)
Re: concatenate protein and 2 ligand files John Stone (Mon Feb 09 2009 - 15:17:44 CST)
Equivalent Mouse Capabilities to Tracker CAVELib Amr Rizq (Mon Feb 09 2009 - 07:06:26 CST)
Re: Atomselect in NAMD GUI John Stone (Mon Feb 09 2009 - 00:06:46 CST)
Re: multiplot : integration of undrawing command (?) Axel Kohlmeyer (Sun Feb 08 2009 - 23:48:49 CST)
multiplot : integration of undrawing command (?) Nadja Lederer (Thu Feb 05 2009 - 05:14:43 CST)
"Hands-On" Workshop on Computational Biophysics, July 6-10 and August 10-14, 2009 TCBG Workshop (Thu Feb 05 2009 - 15:52:29 CST)
Take a look at jaxtr! Sudipta Sinha (Sun Feb 08 2009 - 22:20:40 CST)
Re: Atomselect in NAMD GUI bo baker (Sun Feb 08 2009 - 16:17:15 CST)
concatenate protein and 2 ligand files Thomas Evangelidis (Sat Feb 07 2009 - 11:02:30 CST)
Re: VMD and IED on Windows XP John Stone (Fri Feb 06 2009 - 12:36:04 CST)
Re: Render alpha-carbon trace as cartoon John Stone (Fri Feb 06 2009 - 12:23:33 CST)
International opportunity robert (Fri Feb 06 2009 - 11:25:07 CST)
VMD and IED on Windows XP Roland Schmucki (Thu Feb 05 2009 - 20:57:34 CST)
Re: Progress Bar for the Elapsed Time: rendering problem Axel Kohlmeyer (Thu Feb 05 2009 - 17:23:40 CST)
Progress Bar for the Elapsed Time: rendering problem Suman Chakrabarty (Thu Feb 05 2009 - 16:42:20 CST)
Render alpha-carbon trace as cartoon Patrick Buck (Thu Feb 05 2009 - 13:57:54 CST)
Re: trajectory path script Axel Kohlmeyer (Thu Feb 05 2009 - 11:39:06 CST)
trajectory path script Katherine Parra (Thu Feb 05 2009 - 11:00:12 CST)
Atomselect in NAMD GUI bo baker (Thu Feb 05 2009 - 05:02:45 CST)
Re: "Sorry, this version VMD was compiled with Python support disabled" John Stone (Wed Feb 04 2009 - 16:31:09 CST)
Re: property iterate over a range (representation / draw style) bonicoli_at_loria.fr (Wed Feb 04 2009 - 10:04:40 CST)
"Sorry, this version VMD was compiled with Python support disabled" Maxim Paliy (Wed Feb 04 2009 - 09:19:49 CST)
Apologies Lucas Fernandez Seivane (Tue Feb 03 2009 - 17:34:58 CST)
problem with "measure fit " Leontyev Igor (Tue Feb 03 2009 - 15:51:02 CST)
Re: property iterate over a range (representation / draw style) Axel Kohlmeyer (Tue Feb 03 2009 - 12:10:49 CST)
property iterate over a range (representation / draw style) bonicoli_at_loria.fr (Tue Feb 03 2009 - 11:16:12 CST)
Re: deleting specific residues or atoms Axel Kohlmeyer (Tue Feb 03 2009 - 10:55:28 CST)
Re: rmsd matrix John Stone (Tue Feb 03 2009 - 10:08:00 CST)
rmsd matrix Andres Morales N (Tue Feb 03 2009 - 10:01:28 CST)
deleting specific residues or atoms maria goranovic (Tue Feb 03 2009 - 09:57:54 CST)
Re: add a new representation style to VMD John Stone (Tue Feb 03 2009 - 09:02:27 CST)
add a new representation style to VMD Vlad Cojocaru (Tue Feb 03 2009 - 08:22:24 CST)
Re: pictures with frame (corrected) Mario Valle (Tue Feb 03 2009 - 02:58:39 CST)
Re: pictures with frame Mario Valle (Tue Feb 03 2009 - 02:56:50 CST)
pictures with frame BIN ZHANG (Tue Feb 03 2009 - 01:40:32 CST)
selecting set of residue Falgun Shah (Mon Feb 02 2009 - 14:44:45 CST)
Bug in molefacture proline residue of official version (1.8.6 LINUXAMD64) Alexandre Suman de Araujo (Mon Feb 02 2009 - 12:51:46 CST)
Re: rmsd matrix Wei Huang (Mon Feb 02 2009 - 11:08:40 CST)
rmsd matrix Andres Morales N (Mon Feb 02 2009 - 10:59:50 CST)
Re: Link between the electrostatic potential on the surface and the grid.dx generated by APBS John Stone (Mon Feb 02 2009 - 10:41:09 CST)
Link between the electrostatic potential on the surface and the grid.dx generated by APBS Emeline Leproult (Mon Feb 02 2009 - 09:57:02 CST)
Re: ANGLES and DIHEDRALS ... location in VMD code? Javier Goicochea (Mon Feb 02 2009 - 08:33:15 CST)
Re: scriptable way to add hydrogens Axel Kohlmeyer (Sat Jan 31 2009 - 17:35:53 CST)
Re: scriptable way to add hydrogens Peter Freddolino (Sat Jan 31 2009 - 16:44:37 CST)
scriptable way to add hydrogens Thomas Evangelidis (Sat Jan 31 2009 - 16:25:16 CST)
Re: turn off the 'are you sure you want to quit' sound John Stone (Fri Jan 30 2009 - 16:01:04 CST)
turn off the 'are you sure you want to quit' sound Taufik Al-Sarraj (Fri Jan 30 2009 - 15:49:32 CST)
Re: How to install the inorganicbuilder on Windows vista John Stone (Fri Jan 30 2009 - 08:28:04 CST)
Re: how to set color parameters differently for different molecules Axel Kohlmeyer (Thu Jan 29 2009 - 20:35:35 CST)
How to install the inorganicbuilder on Windows vista Hideya Nakamura (Thu Jan 29 2009 - 19:41:45 CST)
Re: how to set color parameters differently for different molecules Thomas Evangelidis (Thu Jan 29 2009 - 19:08:08 CST)
Re: how to set color parameters differently for different molecules MQO. Carlos Javier NÃºÃ±ez Aguero (Thu Jan 29 2009 - 19:03:40 CST)
Re: how to set color parameters differently for different molecules John Stone (Thu Jan 29 2009 - 15:41:18 CST)
Re: how to set color parameters differently for different molecules Thomas Evangelidis (Thu Jan 29 2009 - 15:34:31 CST)
contactmap for RNA Samuel Coulbourn Flores èŠ±å±± (Wed Jan 28 2009 - 16:44:43 CST)
Re: Unable to run VMD in graphical mode/ ubuntu 8.10 / Open GL problem John Stone (Wed Jan 28 2009 - 09:25:52 CST)
Unable to run VMD in graphical mode/ ubuntu 8.10 / Open GL problem Katya Lyakhova (Wed Jan 28 2009 - 09:19:35 CST)
Re: [patch] potential CUDA acceleration - load-balancing on different CUDA devices John Stone (Wed Jan 28 2009 - 08:21:58 CST)
[patch] potential CUDA acceleration - load-balancing on different CUDA devices Martin Aumüller (Wed Jan 28 2009 - 06:35:19 CST)
Re: trans routine John Stone (Tue Jan 27 2009 - 22:29:29 CST)
Re: VMD window transparent in Opensuse 11.1 ATI system John Stone (Tue Jan 27 2009 - 11:56:00 CST)
Re: VMD window transparent in Opensuse 11.1 ATI system Ramon Crehuet (Tue Jan 27 2009 - 11:35:15 CST)
Re: get a PDB file from DCD file JT (Tue Jan 27 2009 - 11:01:41 CST)
Re: get a PDB file from DCD file Benjamin Bouvier (Tue Jan 27 2009 - 09:49:51 CST)
Re: get a PDB file from DCD file Axel Kohlmeyer (Tue Jan 27 2009 - 08:42:18 CST)
Re: get a PDB file from DCD file John Stone (Tue Jan 27 2009 - 08:44:32 CST)
Re: VMD & NAMD atoms naming convention? Axel Kohlmeyer (Tue Jan 27 2009 - 08:35:34 CST)
get a PDB file from DCD file Andres Morales N (Tue Jan 27 2009 - 07:58:23 CST)
Rosetta Academic Training Workshop Nir London (Tue Jan 27 2009 - 07:05:12 CST)
VMD & NAMD atoms naming convention? Javier Goicochea (Tue Jan 27 2009 - 03:05:09 CST)
Re: accessing bonds angles dihedrals etc lists after PSF file is read into VMD Iman Salehinia (Mon Jan 26 2009 - 16:10:39 CST)
Note to VMD-L about posting attachments etc... John Stone (Mon Jan 26 2009 - 15:58:53 CST)
Re: (Resend) Re: Breaking Bonds in VMD John Stone (Mon Jan 26 2009 - 15:55:29 CST)
Re: accessing bonds angles dihedrals etc lists after PSF file is read into VMD John Stone (Mon Jan 26 2009 - 15:42:17 CST)
(no subject) Andres Morales N (Mon Jan 26 2009 - 14:37:40 CST)
Re: Re: How to change title of display window? JT (Mon Jan 26 2009 - 12:26:30 CST)
Re: Re: How to change title of display window? Axel Kohlmeyer (Mon Jan 26 2009 - 12:13:13 CST)
Re: Peter Freddolino (Mon Jan 26 2009 - 06:09:46 CST)
(no subject) gurunath katagi (Mon Jan 26 2009 - 03:19:30 CST)
Re: General question about the memory usage of VMD gurunath katagi (Mon Jan 26 2009 - 03:10:56 CST)
Re: Re: How to change title of display window? Axel Kohlmeyer (Sun Jan 25 2009 - 21:08:18 CST)
Re: How to change title of display window? JT (Sun Jan 25 2009 - 20:09:35 CST)
Re: how to set color parameters differently for different molecules Axel Kohlmeyer (Sun Jan 25 2009 - 13:18:10 CST)
how to set color parameters differently for different molecules Thomas Evangelidis (Sun Jan 25 2009 - 12:09:10 CST)
Re: accessing bonds angles dihedrals etc lists after PSF file is read into VMD Axel Kohlmeyer (Fri Jan 23 2009 - 16:20:30 CST)
Re: VMD not loading in Suse 11.1 Axel Kohlmeyer (Fri Jan 23 2009 - 09:04:18 CST)
VMD not loading in Suse 11.1 Andrew James Bennett (Fri Jan 23 2009 - 05:43:05 CST)
Re: accessing bonds angles dihedrals etc lists after PSF file is read into VMD Peter Freddolino (Thu Jan 22 2009 - 18:38:36 CST)
Re: accessing bonds angles dihedrals etc lists after PSF file is read into VMD Iman Salehinia (Thu Jan 22 2009 - 18:21:59 CST)
Re: accessing bonds angles dihedrals etc lists after PSF file is read into VMD John Stone (Thu Jan 22 2009 - 11:33:21 CST)
Tcl script Leonardo Trabuco (Thu Jan 22 2009 - 00:01:39 CST)
Tcl script varsha gautham (Wed Jan 21 2009 - 22:45:29 CST)
accessing bonds angles dihedrals etc lists after PSF file is read into VMD Maxim Paliy (Wed Jan 21 2009 - 15:29:54 CST)
Re: Test builds of VMD 1.8.7 using Tcl/Tk 8.5.x... Axel Kohlmeyer (Tue Jan 20 2009 - 17:31:19 CST)
Re: Breaking Bonds in VMD John Stone (Tue Jan 20 2009 - 17:26:01 CST)
Re: Breaking Bonds in VMD Axel Kohlmeyer (Tue Jan 20 2009 - 17:21:16 CST)
Re: VMD window transparent in Opensuse 11.1 ATI system John Stone (Tue Jan 20 2009 - 15:15:14 CST)
Re: VMD window transparent in Opensuse 11.1 ATI system Dan Wright (Tue Jan 20 2009 - 15:13:21 CST)
Re: Breaking Bonds in VMD nicholas lee (Tue Jan 20 2009 - 15:01:16 CST)
Re: Breaking Bonds in VMD John Stone (Tue Jan 20 2009 - 10:47:17 CST)
Breaking Bonds in VMD nicholas lee (Tue Jan 20 2009 - 10:40:46 CST)
Re: VMD window transparent in Opensuse 11.1 ATI system John Stone (Tue Jan 20 2009 - 10:36:12 CST)
Re: VMD plugin for Desmond John Stone (Tue Jan 20 2009 - 09:34:49 CST)
Re: VMD Installation problem on Ubuntu 8.10 maria goranovic (Tue Jan 20 2009 - 09:10:58 CST)
Re: VMD plugin for Desmond Axel Kohlmeyer (Tue Jan 20 2009 - 08:58:24 CST)
Re: VMD window transparent in Opensuse 11.1 ATI system Axel Kohlmeyer (Tue Jan 20 2009 - 08:56:12 CST)
Re: VMD plugin for Desmond ÖÜÎÄ²ý (Tue Jan 20 2009 - 08:58:31 CST)
Re: Problems with tcl/tk 8.5 Axel Kohlmeyer (Tue Jan 20 2009 - 08:53:02 CST)
Re: Fwd: Tcl script Axel Kohlmeyer (Tue Jan 20 2009 - 08:49:21 CST)
Re: Problems with tcl/tk 8.5 John Stone (Tue Jan 20 2009 - 08:51:08 CST)
Re: VMD Installation problem on Ubuntu 8.10 John Stone (Tue Jan 20 2009 - 08:46:05 CST)
Re: VMD window transparent in Opensuse 11.1 ATI system John Stone (Tue Jan 20 2009 - 08:44:57 CST)
Re: VMD plugin for Desmond John Stone (Tue Jan 20 2009 - 08:42:20 CST)
VMD Installation problem on Ubuntu 8.10 maria goranovic (Tue Jan 20 2009 - 08:27:12 CST)
VMD plugin for Desmond ÖÜÎÄ²ý (Tue Jan 20 2009 - 08:23:13 CST)
Re: Fwd: Tcl script Roman Petrenko (Tue Jan 20 2009 - 06:24:37 CST)
VMD window transparent in Opensuse 11.1 ATI system Ramon Crehuet (Tue Jan 20 2009 - 06:09:27 CST)
Fwd: Tcl script varsha gautham (Tue Jan 20 2009 - 02:11:56 CST)
Problems with tcl/tk 8.5 Bernd Doser (Tue Jan 20 2009 - 02:08:05 CST)
Re: Download the newest version of VMD Axel Kohlmeyer (Mon Jan 19 2009 - 10:09:33 CST)
Re: Download the newest version of VMD Carsten Olbrich (Mon Jan 19 2009 - 05:05:08 CST)
Download the newest version of VMD ÖÜÎÄ²ý (Mon Jan 19 2009 - 04:15:52 CST)
RE: How to get rid of default patch for NTER and CTER Aaron.Oakley_at_csiro.au (Sun Jan 18 2009 - 19:24:36 CST)
Re: How to get rid of default patch for NTER and CTER Schreiner Eduard (Sun Jan 18 2009 - 19:11:32 CST)
How to get rid of default patch for NTER and CTER Jianping Lin (Sun Jan 18 2009 - 15:45:34 CST)
Test builds of VMD 1.8.7 using Tcl/Tk 8.5.x... John Stone (Fri Jan 16 2009 - 15:34:21 CST)
Re: XYZ trajectory with different atom types? Axel Kohlmeyer (Fri Jan 16 2009 - 14:00:00 CST)
XYZ trajectory with different atom types? AA (Fri Jan 16 2009 - 13:21:15 CST)
trans routine Edward Lyman (Fri Jan 16 2009 - 12:49:24 CST)
Re: ANGLES and DIHEDRALS ... location in VMD code? John Stone (Fri Jan 16 2009 - 09:31:01 CST)
Re: Problem with Install Joaquim Rui Rodrigues (Fri Jan 16 2009 - 06:59:15 CST)
Problem with Install bo baker (Fri Jan 16 2009 - 05:12:34 CST)
ANGLES and DIHEDRALS ... location in VMD code? Javier Goicochea (Fri Jan 16 2009 - 02:17:00 CST)
Re: Understanding topology files? Javier Goicochea (Fri Jan 16 2009 - 02:10:19 CST)
helicity score? BIN ZHANG (Thu Jan 15 2009 - 23:39:21 CST)
Re: Data fields in vmd Axel Kohlmeyer (Thu Jan 15 2009 - 14:10:26 CST)
Re: Understanding topology files? Axel Kohlmeyer (Thu Jan 15 2009 - 14:06:16 CST)
Re: Data fields in vmd Cesar Luis Avila (Thu Jan 15 2009 - 13:27:14 CST)
Re: Data fields in vmd John Stone (Thu Jan 15 2009 - 11:38:22 CST)
Re: Data fields in vmd Cesar Luis Avila (Thu Jan 15 2009 - 12:33:09 CST)
Re: Data fields in vmd John Stone (Thu Jan 15 2009 - 10:34:56 CST)
Re: Understanding topology files? Javier Goicochea (Thu Jan 15 2009 - 10:32:55 CST)
Re: Understanding topology files? Christopher Gillespie (Thu Jan 15 2009 - 10:27:52 CST)
Re: Understanding topology files? Javier Goicochea (Thu Jan 15 2009 - 10:11:05 CST)
Re: Understanding topology files? Christopher Gillespie (Thu Jan 15 2009 - 09:25:23 CST)
Understanding topology files? Javier Goicochea (Thu Jan 15 2009 - 08:03:50 CST)
Re: updating DCD frames in python Michael Kreim (Thu Jan 15 2009 - 03:30:55 CST)
Re: loosing color when rendering molecular surface in VMD Schreiner Eduard (Wed Jan 14 2009 - 20:58:22 CST)
Re: loosing color when rendering molecular surface in VMD John Stone (Wed Jan 14 2009 - 20:50:03 CST)
loosing color when rendering molecular surface in VMD Michael Klein (Wed Jan 14 2009 - 20:17:23 CST)
Re: Data fields in vmd Axel Kohlmeyer (Wed Jan 14 2009 - 14:56:10 CST)
Data fields in vmd Cesar Luis Avila (Wed Jan 14 2009 - 15:02:25 CST)
Re: updating DCD frames in python Axel Kohlmeyer (Wed Jan 14 2009 - 11:11:45 CST)
updating DCD frames in python Michael Kreim (Wed Jan 14 2009 - 09:55:06 CST)
Re: building loops Peter Freddolino (Tue Jan 13 2009 - 19:18:55 CST)
building loops riya doreen (Tue Jan 13 2009 - 18:53:09 CST)
Re: VMD, VRPN, Phantom Desktop John Stone (Tue Jan 13 2009 - 16:36:20 CST)
Re: VMD Animation example doesn't work... John Stone (Tue Jan 13 2009 - 16:35:01 CST)
Re: which model in pdb vill VMD present? John Stone (Tue Jan 13 2009 - 14:03:58 CST)
Re: Calculating acyl chain order parameter profile on phospholipid vesicles dimka (Tue Jan 13 2009 - 10:28:43 CST)
Re: Dobule and triple bonds Peter Freddolino (Tue Jan 13 2009 - 09:30:56 CST)
Dobule and triple bonds Max (Tue Jan 13 2009 - 04:32:04 CST)
Re: 4x4 trafo matrices to get "homo-two-protein-complex" Peter Freddolino (Mon Jan 12 2009 - 19:30:51 CST)
Re: center of mass Axel Kohlmeyer (Mon Jan 12 2009 - 14:37:05 CST)
Re: 4x4 trafo matrices to get "homo-two-protein-complex" Axel Kohlmeyer (Mon Jan 12 2009 - 14:32:27 CST)
center of mass Alison Grinthal (Mon Jan 12 2009 - 13:51:43 CST)
Re: 4x4 trafo matrices to get "homo-two-protein-complex" Sebastian Stolzenberg (Mon Jan 12 2009 - 12:42:00 CST)
Re: 4x4 trafo matrices to get "homo-two-protein-complex" Peter Freddolino (Mon Jan 12 2009 - 12:17:53 CST)
Re: 4x4 trafo matrices to get "homo-two-protein-complex" Sebastian Stolzenberg (Mon Jan 12 2009 - 12:09:50 CST)
Re: VMD for Linux Axel Kohlmeyer (Mon Jan 12 2009 - 09:11:00 CST)
Re: 4x4 trafo matrices to get "homo-two-protein-complex" Axel Kohlmeyer (Mon Jan 12 2009 - 09:05:41 CST)
Re: : about complexing protein and ligand! Axel Kohlmeyer (Mon Jan 12 2009 - 08:54:21 CST)
Release of the R.E.D.-III.1 tools FyD (Mon Jan 12 2009 - 05:59:14 CST)
VMD for Linux bo baker (Mon Jan 12 2009 - 05:14:50 CST)
4x4 trafo matrices to get "homo-two-protein-complex" Sebastian Stolzenberg (Sun Jan 11 2009 - 22:58:47 CST)
: about complexing protein and ligand! Shirin Awasthi (Sun Jan 11 2009 - 22:40:48 CST)
Re: odd render problems with Vista Eric H. Lee (Sun Jan 11 2009 - 20:53:13 CST)
RE: odd render problems with Vista Irene Newhouse (Sun Jan 11 2009 - 19:49:29 CST)
Re: odd render problems with Vista Peter Freddolino (Sun Jan 11 2009 - 18:50:51 CST)
RE: odd render problems with Vista Irene Newhouse (Sun Jan 11 2009 - 18:25:25 CST)
RE: odd render problems with Vista Irene Newhouse (Sun Jan 11 2009 - 18:21:59 CST)
RE: odd render problems with Vista Irene Newhouse (Sun Jan 11 2009 - 18:20:08 CST)
Re: odd render problems with Vista Peter Freddolino (Sun Jan 11 2009 - 14:49:47 CST)
Re: odd render problems with Vista Axel Kohlmeyer (Sun Jan 11 2009 - 14:37:10 CST)
Re: odd render problems with Vista Axel Kohlmeyer (Sun Jan 11 2009 - 14:27:58 CST)
Re: odd render problems with Vista Benjamin Bouvier (Sun Jan 11 2009 - 14:20:04 CST)
Re: odd render problems with Vista Peter Freddolino (Sun Jan 11 2009 - 14:05:18 CST)
Re: putting a set of selections in a list or an array Axel Kohlmeyer (Sun Jan 11 2009 - 13:53:41 CST)
odd render problems with Vista Irene Newhouse (Sun Jan 11 2009 - 13:26:57 CST)
putting a set of selections in a list or an array A D (Sun Jan 11 2009 - 12:14:08 CST)
Re: cube file question Axel Kohlmeyer (Fri Jan 09 2009 - 08:23:16 CST)
Re: Functional Groups Axel Kohlmeyer (Fri Jan 09 2009 - 08:16:12 CST)
cube file question Jun Cheng (Fri Jan 09 2009 - 05:12:20 CST)
Functional Groups Max (Fri Jan 09 2009 - 04:51:39 CST)
Calculating acyl chain order parameter profile on phospholipid vesicles Cesar Luis Avila (Thu Jan 08 2009 - 15:43:55 CST)
which model in pdb vill VMD present? Steven W (Wed Jan 07 2009 - 12:21:59 CST)
Re: measure rmsf - command (step argument) Axel Kohlmeyer (Wed Jan 07 2009 - 10:44:18 CST)
measure rmsf - command (step argument) Nadja Lederer (Wed Jan 07 2009 - 05:20:42 CST)
Re: Large dcd file jouko_at_berkeley.edu (Tue Jan 06 2009 - 22:32:51 CST)
Re: Problems with NewCartoon Cartoon Representations Peter Freddolino (Tue Jan 06 2009 - 19:48:47 CST)
Re: Large dcd file Axel Kohlmeyer (Tue Jan 06 2009 - 19:04:46 CST)
Re: Large dcd file Axel Kohlmeyer (Tue Jan 06 2009 - 19:01:25 CST)
Re: Large dcd file Roman Petrenko (Tue Jan 06 2009 - 17:25:03 CST)
Large dcd file jouko_at_berkeley.edu (Tue Jan 06 2009 - 16:31:46 CST)
Problems with NewCartoon Cartoon Representations haosheng_at_hec.utah.edu (Tue Jan 06 2009 - 15:39:43 CST)
Re: eliminate atoms from psf and pdb files Axel Kohlmeyer (Tue Jan 06 2009 - 12:33:37 CST)
Re: changing bond color Axel Kohlmeyer (Tue Jan 06 2009 - 12:30:19 CST)
Re: changing bond color Ramya Gamini (Tue Jan 06 2009 - 12:27:22 CST)
Re: eliminate atoms from psf and pdb files Peter Freddolino (Tue Jan 06 2009 - 11:51:45 CST)
Re: changing bond color Peter Freddolino (Tue Jan 06 2009 - 11:50:11 CST)
eliminate atoms from psf and pdb files caterinabernini_at_unisi.it (Tue Jan 06 2009 - 11:40:15 CST)
changing bond color jfgaff_at_ncsu.edu (Tue Jan 06 2009 - 11:39:20 CST)
Re: tcl scripts in parallel in VMD? Axel Kohlmeyer (Tue Jan 06 2009 - 10:06:25 CST)
tcl scripts in parallel in VMD? Maxim Paliy (Tue Jan 06 2009 - 08:14:41 CST)
Re: a problem on Red Hat Enterprise Linux 5 Seungho Choe (Mon Jan 05 2009 - 11:25:16 CST)
Re: a problem on Red Hat Enterprise Linux 5 John Stone (Mon Jan 05 2009 - 16:13:40 CST)
a problem on Red Hat Enterprise Linux 5 Seungho Choe (Mon Jan 05 2009 - 10:48:32 CST)
Re: list of all the file type keywords for "mol load"? Axel Kohlmeyer (Mon Jan 05 2009 - 10:44:03 CST)
list of all the file type keywords for "mol load"? Maxim Paliy (Mon Jan 05 2009 - 10:00:20 CST)
Re: known issues with measure hbonds JC Gumbart (Mon Dec 29 2008 - 09:31:59 CST)
Re: namd-l: Changing the Secondary Structure of a Protein JC Gumbart (Sun Dec 28 2008 - 08:55:03 CST)
Re: namd-l: Changing the Secondary Structure of a Protein Peter Freddolino (Sun Dec 28 2008 - 08:48:38 CST)
Changing the Secondary Structure of a Protein MIke S (Sun Dec 28 2008 - 01:18:23 CST)
Re: I need a bid trajectory please!!! Thomas Evangelidis (Fri Dec 26 2008 - 16:01:33 CST)
Re: I need a bid trajectory please!!! Axel Kohlmeyer (Fri Dec 26 2008 - 14:20:38 CST)
Re: Space distribution functions Axel Kohlmeyer (Fri Dec 26 2008 - 14:15:58 CST)
I need a bid trajectory please!!! Thomas Evangelidis (Thu Dec 25 2008 - 16:54:44 CST)
Space distribution functions aneesh cna (Wed Dec 24 2008 - 23:08:03 CST)
Re: beta column format in PDB Axel Kohlmeyer (Wed Dec 24 2008 - 15:53:27 CST)
Re: SBCG membrane Anton Arkhipov (Wed Dec 24 2008 - 15:01:38 CST)
Re: beta column format in PDB BIN ZHANG (Wed Dec 24 2008 - 14:57:47 CST)
Re: beta column format in PDB Axel Kohlmeyer (Wed Dec 24 2008 - 14:33:53 CST)
beta column format in PDB BIN ZHANG (Wed Dec 24 2008 - 13:41:23 CST)
SBCG membrane Dolan, Michael (NIH/NIAID) [C] (Wed Dec 24 2008 - 11:59:25 CST)
Re: measure the distance between center of molecules John Stone (Tue Dec 23 2008 - 11:12:38 CST)
measure the distance between center of molecules Taufik Al-Sarraj (Tue Dec 23 2008 - 11:06:22 CST)
Re: difficulties referencing a variable within a namespace Peter Freddolino (Mon Dec 22 2008 - 14:04:35 CST)
Re: How to get all the angle combinations? John Stone (Mon Dec 22 2008 - 10:37:35 CST)
Re: Remove PBC Peter Freddolino (Sun Dec 21 2008 - 21:30:56 CST)
difficulties referencing a variable within a namespace Thomas Evangelidis (Sun Dec 21 2008 - 21:00:38 CST)
Remove PBC Alessandro.Maiorana_at_roma2.infn.it (Sun Dec 21 2008 - 04:09:38 CST)
Re: CHARMM to AMBER trajectory conversion Axel Kohlmeyer (Fri Dec 19 2008 - 09:56:01 CST)
VMD Animation example doesn't work... Alberto Sergio Garay (Fri Dec 19 2008 - 06:52:05 CST)
CHARMM to AMBER trajectory conversion Peter Jones (Thu Dec 18 2008 - 22:40:53 CST)
known issues with measure hbonds Harindar Keer (Thu Dec 18 2008 - 17:59:34 CST)
How to get all the angle combinations? BIN ZHANG (Wed Dec 17 2008 - 23:07:16 CST)
Re: QM Geometry optimization Axel Kohlmeyer (Wed Dec 17 2008 - 13:53:09 CST)
Re: QM Geometry optimization bo baker (Wed Dec 17 2008 - 12:30:08 CST)
Re: QM Geometry optimization Axel Kohlmeyer (Wed Dec 17 2008 - 09:23:33 CST)
Re: QM Geometry optimization Peter Freddolino (Wed Dec 17 2008 - 08:57:05 CST)
QM Geometry optimization bo baker (Tue Dec 16 2008 - 23:59:49 CST)
VMD Animation example doesn't work... Alberto Sergio Garay (Tue Dec 16 2008 - 04:43:23 CST)
Re: defintion of alpha helix in vmd? L. Michel Espinoza-Fonseca (Tue Dec 16 2008 - 04:41:47 CST)
defintion of alpha helix in vmd? Bernhard Knapp (Tue Dec 16 2008 - 03:30:03 CST)
Re: haptics device "novint falcon" John Stone (Mon Dec 15 2008 - 09:26:40 CST)
haptics device "novint falcon" angel_at_cbuc.cl (Mon Dec 15 2008 - 09:13:31 CST)
Re: the exact definition of the keyword "radius" of the atom selection Axel Kohlmeyer (Sat Dec 13 2008 - 16:37:11 CST)
the exact definition of the keyword "radius" of the atom selection Lan Hua (Sat Dec 13 2008 - 14:10:40 CST)
paratool dont recognize gaussian output angel_at_cbuc.cl (Fri Dec 12 2008 - 10:10:13 CST)
VMD, VRPN, Phantom Desktop Nicholas Labello (Fri Dec 12 2008 - 09:43:19 CST)
Re: Problem finding center of mass for all the frames ramya narasimhan (Wed Dec 10 2008 - 04:45:35 CST)
Re: Problem finding center of mass for all the frames Leonardo Trabuco (Wed Dec 10 2008 - 04:34:27 CST)
Re: Problem finding center of mass for all the frames ramya narasimhan (Wed Dec 10 2008 - 04:26:16 CST)
coloring of an item created by canvas Nadja Lederer (Wed Dec 10 2008 - 04:07:51 CST)
Re: Problem finding center of mass for all the frames Schreiner Eduard (Wed Dec 10 2008 - 01:52:29 CST)
Problem finding center of mass for all the frames ramya narasimhan (Wed Dec 10 2008 - 01:31:38 CST)
Re: vmd on fedora John Stone (Tue Dec 09 2008 - 10:34:33 CST)
Re: vmd on fedora Taufik Al-Sarraj (Tue Dec 09 2008 - 10:25:37 CST)
Re: vmd on fedora John Stone (Mon Dec 08 2008 - 20:34:48 CST)
vmd on fedora Taufik Al-Sarraj (Mon Dec 08 2008 - 16:57:24 CST)
Re: How to get number of electrons of an atom in VMD? John Stone (Mon Dec 08 2008 - 15:35:39 CST)
How to get number of electrons of an atom in VMD? BIN ZHANG (Mon Dec 08 2008 - 15:31:42 CST)
equilibrating a membrane patch Edward Lyman (Mon Dec 08 2008 - 13:25:30 CST)
Re: regarding writemol2 Peter Freddolino (Sat Dec 06 2008 - 19:42:33 CST)
regarding writemol2 jani sahil (Sat Dec 06 2008 - 00:34:19 CST)
Re: reagsrding writemol2 Peter Freddolino (Fri Dec 05 2008 - 09:00:29 CST)
Re: How to generate an index (.ind) file? Carsten Olbrich (Fri Dec 05 2008 - 01:30:17 CST)
reagsrding writemol2 jani sahil (Fri Dec 05 2008 - 00:11:42 CST)
How to generate an index (.ind) file? Anirban Ghosh (Fri Dec 05 2008 - 00:07:49 CST)
Re: To find the residues on each side of the protein ramya narasimhan (Wed Dec 03 2008 - 22:36:40 CST)
Re: atom selection Joaquim Rui Rodrigues (Wed Dec 03 2008 - 11:44:55 CST)
Re: atom selection Leonardo Trabuco (Wed Dec 03 2008 - 11:10:53 CST)
atom selection aneesh cna (Wed Dec 03 2008 - 05:32:57 CST)
Re: To find the residues on each side of the protein Axel Kohlmeyer (Wed Dec 03 2008 - 05:17:48 CST)
To find the residues on each side of the protein ramya narasimhan (Wed Dec 03 2008 - 02:42:33 CST)
undrawing lines in multiplot? Nadja Lederer (Wed Dec 03 2008 - 02:29:57 CST)
Re: memory leak found Axel Kohlmeyer (Tue Dec 02 2008 - 12:58:25 CST)
Re: memory leak found Ondrej Marsalek (Tue Dec 02 2008 - 12:40:26 CST)
Re: memory leak found Ondrej Marsalek (Tue Dec 02 2008 - 12:19:51 CST)
Re: Rotation of molecules Axel Kohlmeyer (Tue Dec 02 2008 - 11:29:25 CST)
Re: memory leak found Axel Kohlmeyer (Tue Dec 02 2008 - 11:23:28 CST)
Re: memory leak found John Stone (Tue Dec 02 2008 - 09:14:22 CST)
memory leak found Ondrej Marsalek (Tue Dec 02 2008 - 09:08:09 CST)
Rotation of molecules Björn Windshügel (Tue Dec 02 2008 - 08:20:30 CST)
Getting data as vector or matrix Iman Salehinia (Tue Dec 02 2008 - 00:48:29 CST)
Running VMD on Mac OS X Christopher Share (Mon Dec 01 2008 - 23:23:08 CST)
Re: prepare initial structure Schreiner Eduard (Mon Dec 01 2008 - 14:16:48 CST)
prepare initial structure oguz gurbulak (Mon Dec 01 2008 - 13:52:31 CST)
Re: script that reacts on movement of frameslider in vmd main Benjamin Bouvier (Mon Dec 01 2008 - 09:28:55 CST)
script that reacts on movement of frameslider in vmd main Nadja Lederer (Mon Dec 01 2008 - 07:41:36 CST)
Re: how to prevent view reset on data load Ondrej Marsalek (Sun Nov 30 2008 - 15:58:56 CST)
Re: how to prevent view reset on data load Axel Kohlmeyer (Sun Nov 30 2008 - 05:46:45 CST)
Re: transparent or translucent backgrond for images Axel Kohlmeyer (Sun Nov 30 2008 - 05:37:01 CST)
how to prevent view reset on data load Ondrej Marsalek (Sat Nov 29 2008 - 10:52:45 CST)
transparent or translucent backgrond for images Neelanjana Sengupta (Sat Nov 29 2008 - 06:18:46 CST)
Re: multiplot: control reaction for click on datapoints? Nadja Lederer (Thu Nov 27 2008 - 10:09:53 CST)
Re: Other color scales than the predefined ones? John Stone (Thu Nov 27 2008 - 09:36:40 CST)
Re: Other color scales than the predefined ones? Berit Hinnemann (Thu Nov 27 2008 - 03:38:46 CST)
total number of donors and acceptors Roman Petrenko (Wed Nov 26 2008 - 18:27:16 CST)
Re: Desmond trajectory conversion to dcd format Dong Xu (Wed Nov 26 2008 - 17:15:25 CST)
Re: Desmond trajectory conversion to dcd format dimka (Wed Nov 26 2008 - 17:09:57 CST)
Re: Desmond trajectory conversion to dcd format John Stone (Wed Nov 26 2008 - 16:52:42 CST)
Desmond trajectory conversion to dcd format Dong Xu (Wed Nov 26 2008 - 16:24:57 CST)
Re: multiplot: control reaction for click on datapoints? Nadja Lederer (Wed Nov 26 2008 - 14:00:18 CST)
Re: Movie of a xyz trajectory Berit Hinnemann (Wed Nov 26 2008 - 07:03:06 CST)
Other color scales than the predefined ones? Berit Hinnemann (Wed Nov 26 2008 - 07:00:17 CST)
Re: 3D Graphics John Stone (Wed Nov 26 2008 - 11:16:18 CST)
Re: bug in comments interpretation of vmd John Stone (Wed Nov 26 2008 - 11:13:49 CST)
Re: multiplot: control reaction for click on datapoints? Nadja Lederer (Wed Nov 26 2008 - 11:12:20 CST)
Other color scales than the predefined ones Berit Hinnemann (Wed Nov 26 2008 - 09:52:23 CST)
Re: Other color scales than the predefined ones? Axel Kohlmeyer (Wed Nov 26 2008 - 10:21:02 CST)
Re: tcl fscript or Removeing protein flucutation Axel Kohlmeyer (Wed Nov 26 2008 - 10:24:18 CST)
tcl fscript or Removeing protein flucutation karthigeyan karthigeyantp (Wed Nov 26 2008 - 05:45:33 CST)
Re: Movie of a xyz trajectory Axel Kohlmeyer (Wed Nov 26 2008 - 05:12:34 CST)
Movie of a xyz trajectory Roberto Gaspari (Wed Nov 26 2008 - 03:09:43 CST)
multiplot: control reaction for click on datapoints? Nadja Lederer (Wed Nov 26 2008 - 02:34:31 CST)
Re: drawing lines Peter Freddolino (Tue Nov 25 2008 - 18:23:12 CST)
drawing lines Ryan Pavlovicz (Tue Nov 25 2008 - 12:38:31 CST)
Re: 3D Graphics Jesper Soerensen (Tue Nov 25 2008 - 09:41:12 CST)
Re: CG bead definition Anton Arkhipov (Mon Nov 24 2008 - 18:36:23 CST)
Re: CG bead definition BIN ZHANG (Mon Nov 24 2008 - 18:24:35 CST)
Re: [patch] Autodetection of formats supported by openbabel FX (Mon Nov 24 2008 - 17:05:26 CST)
Re: CG bead definition Anton Arkhipov (Mon Nov 24 2008 - 16:43:28 CST)
Re: unloading volumetric data Ondrej Marsalek (Mon Nov 24 2008 - 11:09:35 CST)
Re: General question about the memory usage of VMD John Stone (Mon Nov 24 2008 - 11:00:33 CST)
Re: 3D Graphics John Stone (Mon Nov 24 2008 - 10:40:21 CST)
Re: IED analysis John Stone (Mon Nov 24 2008 - 10:34:42 CST)
Re: unloading volumetric data John Stone (Mon Nov 24 2008 - 10:32:14 CST)
Re: [patch] Autodetection of formats supported by openbabel John Stone (Mon Nov 24 2008 - 10:22:47 CST)
unloading volumetric data Ondrej Marsalek (Mon Nov 24 2008 - 10:18:39 CST)
CG bead definition BIN ZHANG (Sun Nov 23 2008 - 23:56:12 CST)
Re: Calculating volumes enclosed by SAS Deepangi Pandit (Fri Nov 21 2008 - 16:09:12 CST)
Re: entropy calculations L. Michel Espinoza-Fonseca (Fri Nov 21 2008 - 16:05:11 CST)
entropy calculations Roman Petrenko (Fri Nov 21 2008 - 15:23:07 CST)
entropy calculations Roman Petrenko (Fri Nov 21 2008 - 15:16:40 CST)
Calculating volumes enclosed by SAS Ghaleb El Masri (Fri Nov 21 2008 - 14:44:39 CST)
RE: need tcl help, please Irene Newhouse (Fri Nov 21 2008 - 14:36:07 CST)
Re: need tcl help, please Peter Freddolino (Fri Nov 21 2008 - 13:22:04 CST)
need tcl help, please Irene Newhouse (Fri Nov 21 2008 - 12:57:03 CST)
Re: namd-l: Re: Loading .vel file in VMD Thomas C. Bishop (Fri Nov 21 2008 - 09:11:42 CST)
Re: view only parts of the loaded volumetric data Axel Kohlmeyer (Fri Nov 21 2008 - 05:01:21 CST)
view only parts of the loaded volumetric data Vlad Cojocaru (Fri Nov 21 2008 - 04:18:11 CST)
Re: Loading .vel file in VMD Axel Kohlmeyer (Fri Nov 21 2008 - 03:45:39 CST)
Loading .vel file in VMD dipti lele (Thu Nov 20 2008 - 23:03:42 CST)
Re: question Axel Kohlmeyer (Thu Nov 20 2008 - 11:55:59 CST)
Re: running a script Axel Kohlmeyer (Thu Nov 20 2008 - 11:54:38 CST)
question Wojciech Rajchel (Thu Nov 20 2008 - 11:08:31 CST)
running a script Mark M Huntress (Thu Nov 20 2008 - 10:03:10 CST)
how to get temperature fluctuations maria goranovic (Thu Nov 20 2008 - 08:36:06 CST)
3D Graphics Jesper Soerensen (Thu Nov 20 2008 - 05:50:51 CST)
[patch] Autodetection of formats supported by openbabel FX (Thu Nov 20 2008 - 05:07:17 CST)
Re: representation ColorID in Tcl Axel Kohlmeyer (Wed Nov 19 2008 - 12:24:51 CST)
H-bond occupancy Irene Newhouse (Wed Nov 19 2008 - 12:23:58 CST)
Re: representation ColorID in Tcl Peter Freddolino (Wed Nov 19 2008 - 12:16:07 CST)
representation ColorID in Tcl David Tanner (Wed Nov 19 2008 - 11:25:42 CST)
Re: Autoionize plugin Rabab Toubar (Wed Nov 19 2008 - 10:07:33 CST)
Re: Autoionize plugin bo liu (Wed Nov 19 2008 - 08:42:58 CST)
IED analysis ÖÜÎÄ²ý (Wed Nov 19 2008 - 02:19:19 CST)
RE: Autoionize plugin JC Gumbart (Wed Nov 19 2008 - 00:23:56 CST)
Autoionize plugin Rabab Toubar (Tue Nov 18 2008 - 19:40:24 CST)
Re: use configure.options Anirban Ghosh (Mon Nov 17 2008 - 22:34:14 CST)
Re: use configure.options Chen Chen (Mon Nov 17 2008 - 21:37:24 CST)
Re: use configure.options jani sahil (Mon Nov 17 2008 - 21:27:58 CST)
Re: use configure.options John Stone (Mon Nov 17 2008 - 21:06:12 CST)
Re: use configure.options Chen Chen (Mon Nov 17 2008 - 20:53:14 CST)
Re: use configure.options John Stone (Mon Nov 17 2008 - 20:28:36 CST)
use configure.options Chen Chen (Mon Nov 17 2008 - 19:34:24 CST)
Re: General question about the memory usage of VMD Robert Brunner (Mon Nov 17 2008 - 14:42:45 CST)
Re: General question about the memory usage of VMD Axel Kohlmeyer (Mon Nov 17 2008 - 14:31:02 CST)
Re: how to run catdcd from within a proc Axel Kohlmeyer (Mon Nov 17 2008 - 12:48:52 CST)
General question about the memory usage of VMD tinifcarter_at_gmail.com (Mon Nov 17 2008 - 11:48:00 CST)
Re: wavefront and VMD Sandro Canavezzi de Abreu (Mon Nov 17 2008 - 11:44:29 CST)
Re: how to run catdcd from within a proc BIN ZHANG (Mon Nov 17 2008 - 11:25:32 CST)
how to run catdcd from within a proc Thomas Evangelidis (Mon Nov 17 2008 - 10:42:44 CST)
Re: wavefront and VMD Axel Kohlmeyer (Mon Nov 17 2008 - 09:12:55 CST)
Re: wavefront and VMD Sandro Canavezzi de Abreu (Mon Nov 17 2008 - 07:58:08 CST)
Installation problems on openSUSE 10.3 Lawrence Wickert (Sat Nov 15 2008 - 20:22:44 CST)
(no subject) Lawrence Wickert (Sat Nov 15 2008 - 20:19:35 CST)
Re: wavefront and VMD John Stone (Fri Nov 14 2008 - 15:46:51 CST)
Re: How to set the default properties of drawing methods? no tengo nombre (Thu Nov 13 2008 - 11:55:11 CST)
Re: How to set the default properties of drawing methods? John Stone (Thu Nov 13 2008 - 08:45:40 CST)
How to set the default properties of drawing methods? Heikki Kasnanen (Thu Nov 13 2008 - 08:39:43 CST)
Re: VMD crashes on displaying NewRibbons or New Cartoon John Stone (Thu Nov 13 2008 - 08:26:20 CST)
Re: VMD crashes on displaying NewRibbons or New Cartoon Thomas C. Bishop (Thu Nov 13 2008 - 08:20:50 CST)
combine.tcl error Jennifer Brookes (Thu Nov 13 2008 - 04:23:03 CST)
About Hydrogen bond calculation ÖÜÎÄ²ý (Thu Nov 13 2008 - 03:20:03 CST)
Re: VMD crashes on displaying NewRibbons or New Cartoon Jufang Shan (Wed Nov 12 2008 - 20:48:17 CST)
wavefront and VMD Sandro Canavezzi de Abreu (Wed Nov 12 2008 - 14:07:36 CST)
Re: load MSMS files into vmd John Stone (Wed Nov 12 2008 - 13:51:23 CST)
Re: load MSMS files into vmd John Stone (Wed Nov 12 2008 - 09:57:39 CST)
Re: VMD crashes on displaying NewRibbons or New Cartoon John Stone (Wed Nov 12 2008 - 09:35:13 CST)
Re: Re: Peter Freddolino (Tue Nov 11 2008 - 22:33:13 CST)
Re: Re: Anirban Ghosh (Tue Nov 11 2008 - 22:27:15 CST)
Re: Re: Peter Freddolino (Tue Nov 11 2008 - 22:22:28 CST)
Re: Re: Peter Freddolino (Tue Nov 11 2008 - 22:07:42 CST)
Re: Re: Anirban Ghosh (Tue Nov 11 2008 - 21:59:01 CST)
Re: doubling a membrane Cesar Luis Avila (Tue Nov 11 2008 - 18:44:07 CST)
Re: doubling a membrane Cesar Luis Avila (Tue Nov 11 2008 - 13:23:33 CST)
Re: Peter Freddolino (Tue Nov 11 2008 - 10:30:47 CST)
Re: OpenGL Display John Stone (Tue Nov 11 2008 - 08:05:17 CST)
(no subject) Anirban Ghosh (Tue Nov 11 2008 - 07:17:04 CST)
OpenGL Display max_at_liaad.up.pt (Tue Nov 11 2008 - 04:03:12 CST)
Re: fasta2pdb Peter Freddolino (Mon Nov 10 2008 - 17:30:19 CST)
Re: doubling a membrane Peter Freddolino (Mon Nov 10 2008 - 17:29:24 CST)
doubling a membrane Edward Lyman (Mon Nov 10 2008 - 16:42:13 CST)
Re: fasta2pdb Eric H. Lee (Mon Nov 10 2008 - 15:16:00 CST)
fasta2pdb Roman Petrenko (Mon Nov 10 2008 - 14:33:24 CST)
Re: movie Axel Kohlmeyer (Sun Nov 09 2008 - 11:56:35 CST)
movie Abu Naser (Sun Nov 09 2008 - 11:06:20 CST)
usage for the patch 5DP (there is no information in the tutorial) OZGE ENGIN (Sat Nov 08 2008 - 03:17:41 CST)
usage for the pacth 5DP (there is no information in the tutorial) OZGE ENGIN (Sat Nov 08 2008 - 03:10:17 CST)
usage for the patch 5DP (there is no information in the tutorial) OZGE ENGIN (Fri Nov 07 2008 - 19:04:35 CST)
load MSMS files into vmd Prevost Martine (Fri Nov 07 2008 - 09:29:34 CST)
Re: Multiple incompatible definitions warning Peter Freddolino (Thu Nov 06 2008 - 12:04:06 CST)
Multiple incompatible definitions warning Subramanian Vaitheeswaran (Thu Nov 06 2008 - 11:25:01 CST)
RMSD error "Matrix: Warning: no convergence" Maria Sanchez (Thu Nov 06 2008 - 09:16:20 CST)
Re: Sequentially numbering atom names in pdb file Axel Kohlmeyer (Wed Nov 05 2008 - 16:24:57 CST)
Re: CG Map Tool Syntax Error Anton Arkhipov (Wed Nov 05 2008 - 16:16:59 CST)
Re: Sequentially numbering atom names in pdb file Robert Brunner (Wed Nov 05 2008 - 16:02:54 CST)
Sequentially numbering atom names in pdb file Subramanian Vaitheeswaran (Wed Nov 05 2008 - 14:29:24 CST)
CG Map Tool Syntax Error Anirban Ghosh (Wed Nov 05 2008 - 04:48:32 CST)
Re: Average position of atom set Leonardo Trabuco (Tue Nov 04 2008 - 20:11:01 CST)
RE: B factor calculation Aaron.Oakley_at_csiro.au (Tue Nov 04 2008 - 16:27:02 CST)
B factor calculation AyÅŸe Ã–zlem Aykut (Tue Nov 04 2008 - 10:51:24 CST)
Average position of atom set Christopher Hartshorn (Tue Nov 04 2008 - 09:59:56 CST)
Re: Psfgen : apply patches Peter Freddolino (Tue Nov 04 2008 - 07:16:07 CST)
Psfgen : apply patches Nicolas Floquet (Tue Nov 04 2008 - 06:51:57 CST)
Re: Per-frame 'graphics'? John Stone (Sat Nov 01 2008 - 10:12:56 CDT)
Re: [Fwd: problems with manipulating control switches on VMS main menu] Axel Kohlmeyer (Fri Oct 31 2008 - 18:05:46 CDT)
Re: Per-frame 'graphics'? Axel Kohlmeyer (Fri Oct 31 2008 - 16:59:44 CDT)
Re: conformations of a linker Boris Steipe (Fri Oct 31 2008 - 16:39:17 CDT)
Re: conformations of a linker Peter Freddolino (Fri Oct 31 2008 - 14:37:34 CDT)
conformations of a linker Edward Lyman (Fri Oct 31 2008 - 14:07:08 CDT)
Re: Per-frame 'graphics'? Benjamin Bouvier (Fri Oct 31 2008 - 13:36:24 CDT)
[Fwd: problems with manipulating control switches on VMS main menu] Piotr Cieplak (Fri Oct 31 2008 - 12:57:15 CDT)
Re: Per-frame 'graphics'? Rogan Carr (Fri Oct 31 2008 - 11:22:55 CDT)
Per-frame 'graphics'? Benjamin Bouvier (Fri Oct 31 2008 - 10:46:03 CDT)
VMD crashes on displaying NewRibbons or New Cartoon Jufang Shan (Fri Oct 31 2008 - 10:13:32 CDT)
Visualizing multiple molecules max_at_liaad.up.pt (Fri Oct 31 2008 - 07:26:00 CDT)
PMEpot units jirasak wong-ekkabut (Thu Oct 30 2008 - 15:10:05 CDT)
Re: problems with manipulating control switches on VMS main menu John Stone (Thu Oct 30 2008 - 02:13:11 CDT)
problems with manipulating control switches on VMS main menu Piotr Cieplak (Wed Oct 29 2008 - 19:52:24 CDT)
Re: Warning: no convergence in alignment Jianhui Tian (Wed Oct 29 2008 - 15:16:08 CDT)
Re: reading multiples molecules. Axel Kohlmeyer (Wed Oct 29 2008 - 11:07:55 CDT)
Re: reading multiples molecules. Leonardo Trabuco (Wed Oct 29 2008 - 10:29:36 CDT)
Re: reading multiples molecules. Axel Kohlmeyer (Wed Oct 29 2008 - 10:14:50 CDT)
Re: reading multiples molecules. no tengo nombre (Wed Oct 29 2008 - 05:26:09 CDT)
Re: isosurface question John Stone (Wed Oct 29 2008 - 04:47:48 CDT)
Re: reading multiples molecules. no tengo nombre (Wed Oct 29 2008 - 04:17:12 CDT)
Re: Render surface colored by electrostatic potential Axel Kohlmeyer (Tue Oct 28 2008 - 14:03:47 CDT)
Render surface colored by electrostatic potential Adam Kraut (Tue Oct 28 2008 - 13:27:52 CDT)
isosurface question Raluca Mihaela ANDREI (Tue Oct 28 2008 - 12:48:14 CDT)
Re: move matrix definition Axel Kohlmeyer (Tue Oct 28 2008 - 12:14:13 CDT)
move matrix definition Edward Lyman (Tue Oct 28 2008 - 11:39:42 CDT)
Re: reading multiples molecules. Axel Kohlmeyer (Tue Oct 28 2008 - 09:20:54 CDT)
Re: using the beta and occupancy columns as state variables Axel Kohlmeyer (Tue Oct 28 2008 - 09:17:03 CDT)
Free Trial of New Toxicity Prediction Software (LD50, MRDD, side effects) is now available Maxim Kholin (Tue Oct 28 2008 - 09:00:25 CDT)
Re: reading multiples molecules. Benjamin Bouvier (Tue Oct 28 2008 - 06:15:45 CDT)
reading multiples molecules. no tengo nombre (Tue Oct 28 2008 - 05:05:19 CDT)
using the beta and occupancy columns as state variables Brian Kidd (Tue Oct 28 2008 - 00:42:41 CDT)
Re: Warning: no convergence in alignment John Stone (Mon Oct 27 2008 - 16:35:37 CDT)
Re: Warning: no convergence in alignment Jianhui Tian (Mon Oct 27 2008 - 14:01:21 CDT)
Re: A question about the namd energy plugin of VMD Axel Kohlmeyer (Sun Oct 26 2008 - 13:12:06 CDT)
A question about the namd energy plugin of VMD wayj86 wayj86 (Sun Oct 26 2008 - 08:58:21 CDT)
Re: PBCtools verison 2.3: how to obtain it? Olaf Lenz (Sun Oct 26 2008 - 02:57:17 CDT)
Re: Camera in VMD!!! Schreiner Eduard (Sat Oct 25 2008 - 00:18:58 CDT)
Camera in VMD!!! Iman Salehinia (Fri Oct 24 2008 - 23:10:35 CDT)
Warning: no convergence in alignment Jianhui Tian (Fri Oct 24 2008 - 17:02:08 CDT)
Re: PBCtools verison 2.3: how to obtain it? Axel Kohlmeyer (Fri Oct 24 2008 - 10:32:16 CDT)
Re: advanced selections (or explicit pair list) for measure gofr ? Axel Kohlmeyer (Fri Oct 24 2008 - 10:31:13 CDT)
PBCtools verison 2.3: how to obtain it? mon_sharma_at_research.iiit.ac.in (Fri Oct 24 2008 - 09:19:37 CDT)
advanced selections (or explicit pair list) for measure gofr ? Maxim Paliy (Fri Oct 24 2008 - 07:48:40 CDT)
Re: independent stereo display Axel Kohlmeyer (Thu Oct 23 2008 - 14:15:13 CDT)
independent stereo display Petrica GASCA (Thu Oct 23 2008 - 11:39:07 CDT)
Re: extraction of bound water molecules in a trajectory Thomas C. Bishop (Thu Oct 23 2008 - 08:46:59 CDT)
create movie from multiple frames Petrica GASCA (Thu Oct 23 2008 - 08:25:17 CDT)
Re: change the radius of atoms Joaquim Rui Rodrigues (Thu Oct 23 2008 - 05:40:59 CDT)
extraction of bound water molecules in a trajectory mon_sharma_at_research.iiit.ac.in (Thu Oct 23 2008 - 04:39:07 CDT)
Re: Extract parameters of Shape-based Coarse Graining model from AA simulation dongsheng lei (Thu Oct 23 2008 - 04:46:50 CDT)
Re: Multiseq error: 'can't read 'SequenceIDtoMolID(122)': no such element in array' Elijah Roberts (Wed Oct 22 2008 - 22:24:11 CDT)
change the radius of atoms Iman Salehinia (Wed Oct 22 2008 - 21:35:36 CDT)
Multiseq error: 'can't read 'SequenceIDtoMolID(122)': no such element in array' Perreault, Roger Edward (Wed Oct 22 2008 - 20:34:57 CDT)
Re: dcd format Axel Kohlmeyer (Wed Oct 22 2008 - 15:59:08 CDT)
Re: dcd format Leandro Martínez (Wed Oct 22 2008 - 14:41:32 CDT)
Re: dcd format Axel Kohlmeyer (Wed Oct 22 2008 - 14:17:22 CDT)
Re: dcd format Leandro Martínez (Wed Oct 22 2008 - 13:53:20 CDT)
RE: dcd format Axel Kohlmeyer (Wed Oct 22 2008 - 12:49:56 CDT)
RE: dcd format Tibbitt, Jeffrey A. (Wed Oct 22 2008 - 11:56:30 CDT)
Re: A question about the plugin of salt bridge plugin Leonardo Trabuco (Wed Oct 22 2008 - 11:24:09 CDT)
Re: fitting structure to map generated by Volmap Axel Kohlmeyer (Wed Oct 22 2008 - 10:38:15 CDT)
Re: Extract parameters of Shape-based Coarse Graining model from AA simulation Anton Arkhipov (Wed Oct 22 2008 - 10:28:02 CDT)
Re: fitting structure to map generated by Volmap Tomek Wlodarski (Wed Oct 22 2008 - 04:56:03 CDT)
dcd format JONATHAN BLACK (Wed Oct 22 2008 - 04:30:19 CDT)
Re: convert THR and SER to the phosphorylated forms L. Michel Espinoza-Fonseca (Wed Oct 22 2008 - 04:01:01 CDT)
Extract parameters of Shape-based Coarse Graining model from AA simulation dongsheng lei (Wed Oct 22 2008 - 01:54:54 CDT)
convert THR and SER to the phosphorylated forms bo baker (Tue Oct 21 2008 - 19:06:11 CDT)
Re: fitting structure to map generated by Volmap Axel Kohlmeyer (Tue Oct 21 2008 - 15:53:07 CDT)
Re: fitting structure to map generated by Volmap Tomek Wlodarski (Tue Oct 21 2008 - 15:30:46 CDT)
Re: fitting structure to map generated by Volmap Axel Kohlmeyer (Tue Oct 21 2008 - 14:53:57 CDT)
Re: fitting structure to map generated by Volmap Tomek Wlodarski (Tue Oct 21 2008 - 14:46:15 CDT)
Re: volmap Peter Freddolino (Tue Oct 21 2008 - 10:57:44 CDT)
Re: volmap Anton Arkhipov (Tue Oct 21 2008 - 10:43:40 CDT)
volmap Panagiota Georgoulia (Tue Oct 21 2008 - 09:07:35 CDT)
Re: fitting structure to map generated by Volmap Axel Kohlmeyer (Tue Oct 21 2008 - 09:01:22 CDT)
Querry dipti lele (Tue Oct 21 2008 - 08:42:18 CDT)
fitting structure to map generated by Volmap Tomek Wlodarski (Tue Oct 21 2008 - 07:55:09 CDT)
Re: volmap Peter Freddolino (Tue Oct 21 2008 - 07:26:23 CDT)
Re: Selecting some atoms and changing the color of them Peter Freddolino (Tue Oct 21 2008 - 07:24:08 CDT)
Re: Peter Freddolino (Tue Oct 21 2008 - 07:21:42 CDT)
volmap Panagiota Georgoulia (Tue Oct 21 2008 - 06:17:51 CDT)
(no subject) JONATHAN BLACK (Tue Oct 21 2008 - 04:16:29 CDT)
Selecting some atoms and changing the color of them Iman Salehinia (Tue Oct 21 2008 - 01:55:03 CDT)
Re: PSFGEN problem with URA residues Peter Freddolino (Mon Oct 20 2008 - 09:04:03 CDT)
Re: PSFGEN problem with URA residues Anirban Ghosh (Mon Oct 20 2008 - 08:30:49 CDT)
Re: Improving VMD performance on Linux? Olaf Lenz (Mon Oct 20 2008 - 07:57:28 CDT)
Re: Improving VMD performance on Linux? Olaf Lenz (Mon Oct 20 2008 - 07:37:58 CDT)
Re: Improving VMD performance on Linux? Leandro Martínez (Mon Oct 20 2008 - 07:22:08 CDT)
Re: animated gif Peter Freddolino (Mon Oct 20 2008 - 07:01:18 CDT)
Re: PSFGEN problem with URA residues Peter Freddolino (Mon Oct 20 2008 - 06:59:42 CDT)
animated gif Panagiota Georgoulia (Mon Oct 20 2008 - 06:37:32 CDT)
Re: Catdcd? Anirban Ghosh (Mon Oct 20 2008 - 06:31:25 CDT)
PSFGEN problem with URA residues Anirban Ghosh (Mon Oct 20 2008 - 06:27:06 CDT)
Re: Improving VMD performance on Linux? Benjamin Bouvier (Mon Oct 20 2008 - 06:05:26 CDT)
Re: feature request Axel Kohlmeyer (Sun Oct 19 2008 - 13:26:42 CDT)
feature request Tamara Rogers (Sun Oct 19 2008 - 12:38:18 CDT)
Improving VMD performance on Linux? nbabcock_at_qis.ucalgary.ca (Sat Oct 18 2008 - 14:06:35 CDT)
Re: Catdcd? bo liu (Fri Oct 17 2008 - 00:01:59 CDT)
Out of town until November 1 John Stone (Thu Oct 16 2008 - 15:53:42 CDT)
Re: Error in "measure fit" John Stone (Thu Oct 16 2008 - 15:43:17 CDT)
Re: Catdcd? Axel Kohlmeyer (Thu Oct 16 2008 - 13:23:14 CDT)
Re: Catdcd? Christopher Gillespie (Thu Oct 16 2008 - 12:25:42 CDT)
Catdcd? Christopher Hartshorn (Thu Oct 16 2008 - 11:37:15 CDT)
RE: Problem in text mode Axel Kohlmeyer (Thu Oct 16 2008 - 09:53:50 CDT)
Re: saving trajectories from the command line Axel Kohlmeyer (Thu Oct 16 2008 - 09:11:17 CDT)
saving trajectories from the command line Jim Pfaendtner (Thu Oct 16 2008 - 07:28:00 CDT)
Re: Problem in text mode Schreiner Eduard (Thu Oct 16 2008 - 01:47:48 CDT)
Re: Problem in text mode Eric H. Lee (Thu Oct 16 2008 - 01:43:01 CDT)
RE: Problem in text mode Wei Huang (Thu Oct 16 2008 - 00:58:55 CDT)
Re: Problem in text mode Schreiner Eduard (Thu Oct 16 2008 - 00:41:25 CDT)
Problem in text mode Wei Huang (Thu Oct 16 2008 - 00:25:07 CDT)
Re: velocity calculations John Stone (Wed Oct 15 2008 - 15:58:49 CDT)
Re: velocity calculations Suman Chakrabarty (Wed Oct 15 2008 - 15:40:04 CDT)
Re: Question about the Main Menu window display Alfredo Quevedo (Wed Oct 15 2008 - 13:31:58 CDT)
Re: velocity calculations John Stone (Wed Oct 15 2008 - 12:39:12 CDT)
Re: velocity calculations Axel Kohlmeyer (Wed Oct 15 2008 - 11:20:33 CDT)
Re: velocity calculations John Stone (Wed Oct 15 2008 - 11:11:02 CDT)
velocity calculations Ryan Pavlovicz (Wed Oct 15 2008 - 10:18:50 CDT)
Re: intersurf in vmd John Stone (Tue Oct 14 2008 - 16:44:01 CDT)
Re: why atomselection "protein" can not choose all the protein atoms with different alternate locations? Lan Hua (Tue Oct 14 2008 - 11:55:14 CDT)
Re: why atomselection "protein" can not choose all the protein atoms with different alternate locations? John Stone (Tue Oct 14 2008 - 11:43:43 CDT)
Re: Deleting frames / molecules does not free up memory! Benjamin Bouvier (Tue Oct 14 2008 - 11:34:44 CDT)
Re: Deleting frames / molecules does not free up memory! Axel Kohlmeyer (Tue Oct 14 2008 - 11:13:11 CDT)
Deleting frames / molecules does not free up memory! Benjamin Bouvier (Tue Oct 14 2008 - 10:26:55 CDT)
Re: why atomselection "protein" can not choose all the protein atoms with different alternate locations? Axel Kohlmeyer (Mon Oct 13 2008 - 18:23:35 CDT)
why atomselection "protein" can not choose all the protein atoms with different alternate locations? Lan Hua (Mon Oct 13 2008 - 16:49:07 CDT)
Re: How to specify color based on dihedral angle? Axel Kohlmeyer (Mon Oct 13 2008 - 14:25:11 CDT)
How to specify color based on dihedral angle? Suman Chakrabarty (Mon Oct 13 2008 - 13:09:53 CDT)
Re: Windows version: Loading/writing files bo liu (Mon Oct 13 2008 - 09:50:41 CDT)
Re: Windows version: Loading/writing files Alexander A. Vakhrushev (Mon Oct 13 2008 - 08:49:21 CDT)
Windows version: Loading/writing files Neelanjana Sengupta (Mon Oct 13 2008 - 07:53:41 CDT)
Re: CHARMM TO AMBER FORMAT CONVERT Axel Kohlmeyer (Sun Oct 12 2008 - 19:26:18 CDT)
CHARMM TO AMBER FORMAT CONVERT Semorale (Sun Oct 12 2008 - 18:20:28 CDT)
Re: intersurf in vmd Axel Kohlmeyer (Sat Oct 11 2008 - 18:44:10 CDT)
Error in "measure fit" Stephen Hicks (Sat Oct 11 2008 - 15:05:45 CDT)
intersurf in vmd BIN ZHANG (Sat Oct 11 2008 - 14:58:14 CDT)
Re: STRIDE analysis of beta-sheets in VMD Axel Kohlmeyer (Fri Oct 10 2008 - 16:50:59 CDT)
Re: Density distribution plots Axel Kohlmeyer (Fri Oct 10 2008 - 16:26:20 CDT)
Density distribution plots mahesh naalla (Fri Oct 10 2008 - 15:39:30 CDT)
STRIDE analysis of beta-sheets in VMD Tristan Bereau (Fri Oct 10 2008 - 15:28:33 CDT)
Re: Question about the Main Menu window display Axel Kohlmeyer (Fri Oct 10 2008 - 14:47:28 CDT)
Question about the Main Menu window display Alfredo Quevedo (Fri Oct 10 2008 - 14:15:47 CDT)
Re: loading python Axel Kohlmeyer (Fri Oct 10 2008 - 11:37:28 CDT)
Re: loading python Ryan Pavlovicz (Thu Oct 09 2008 - 22:10:44 CDT)
Re: loading python Axel Kohlmeyer (Thu Oct 09 2008 - 16:31:13 CDT)
loading python Ryan Pavlovicz (Thu Oct 09 2008 - 15:21:15 CDT)
Re: lipid tail selection Danielle Chandler (Thu Oct 09 2008 - 14:30:37 CDT)
Re: Density distribution plots Axel Kohlmeyer (Thu Oct 09 2008 - 14:14:57 CDT)
Density distribution plots mahesh naalla (Thu Oct 09 2008 - 13:28:31 CDT)
Re: Fw: VMD 1.8.6 for UBUNTU 8.04LTS Mamta Mohan (Thu Oct 09 2008 - 10:55:29 CDT)
Povray render cuts litorice,bond,cpk representations schwarz_at_titus.u-strasbg.fr (Thu Oct 09 2008 - 05:14:20 CDT)
Re: Fw: VMD 1.8.6 for UBUNTU 8.04LTS Alexander A. Vakhrushev (Wed Oct 08 2008 - 23:37:06 CDT)
Re: Fw: VMD 1.8.6 for UBUNTU 8.04LTS Axel Kohlmeyer (Wed Oct 08 2008 - 20:57:54 CDT)
Fw: VMD 1.8.6 for UBUNTU 8.04LTS Mamta Mohan (Wed Oct 08 2008 - 20:21:11 CDT)
Re: How to visualize only parts of a molecular surface John Stone (Wed Oct 08 2008 - 13:51:19 CDT)
Re: pbctools usage Axel Kohlmeyer (Wed Oct 08 2008 - 10:23:44 CDT)
pbctools usage Subramanian Vaitheeswaran (Wed Oct 08 2008 - 08:21:10 CDT)
How to visualize only parts of a molecular surface schwarz (Wed Oct 08 2008 - 08:11:47 CDT)
Re: Pairwise RMSD Elijah Roberts (Tue Oct 07 2008 - 15:13:16 CDT)
Re: periodic box image in tcl script John Stone (Tue Oct 07 2008 - 13:22:02 CDT)
Re: Pairwise RMSD John Stone (Tue Oct 07 2008 - 13:20:12 CDT)
Re: Fullscreen mode in VMD John Stone (Tue Oct 07 2008 - 12:53:07 CDT)
Fullscreen mode in VMD Alexandr Bezginov (Tue Oct 07 2008 - 12:34:59 CDT)
Re: Problems after installation (ubuntu 8.04) Alexander A. Vakhrushev (Tue Oct 07 2008 - 12:08:35 CDT)
Re: Problems after installation (ubuntu 8.04) John Stone (Tue Oct 07 2008 - 12:05:17 CDT)
Re: Problems after installation (ubuntu 8.04) Alexander A. Vakhrushev (Tue Oct 07 2008 - 12:03:16 CDT)
Re: Problems after installation (ubuntu 8.04) John Stone (Tue Oct 07 2008 - 11:46:41 CDT)
Re: Vmd on MACOSX awkward msg at startup and error when running Ubq simulation John Stone (Mon Oct 06 2008 - 15:57:08 CDT)
Vmd on MACOSX awkward msg at startup and error when running Ubq simulation Montoya, Jesus Gerardo Galaz (Mon Oct 06 2008 - 14:58:39 CDT)
Re: lipid tail selection Axel Kohlmeyer (Mon Oct 06 2008 - 09:18:15 CDT)
lipid tail selection BIN ZHANG (Sun Oct 05 2008 - 01:16:45 CDT)
Re: Problems after installation (ubuntu 8.04) Anirban Ghosh (Sat Oct 04 2008 - 13:04:09 CDT)
Re: Problems after installation (ubuntu 8.04) Alexander A. Vakhrushev (Fri Oct 03 2008 - 22:55:52 CDT)
Re: Problems after installation (ubuntu 8.04) Tomek Wlodarski (Fri Oct 03 2008 - 16:23:41 CDT)
Re: VMD 1.8.6 for UBUNTU 8.04LTS John Stone (Fri Oct 03 2008 - 14:15:18 CDT)
VMD 1.8.6 for UBUNTU 8.04LTS Mamta Mohan (Fri Oct 03 2008 - 14:03:28 CDT)
Re: TAB key in vmd terminal John Stone (Fri Oct 03 2008 - 11:16:26 CDT)
Pairwise RMSD Dong Xu (Fri Oct 03 2008 - 10:10:16 CDT)
Re: Problems after installation (ubuntu 8.04) John Stone (Fri Oct 03 2008 - 09:49:22 CDT)
AW: volumetric maps markus.mooslechner_at_orf.at (Fri Oct 03 2008 - 05:11:50 CDT)
Re: Problems after installation (ubuntu 8.04) Alexander A. Vakhrushev (Fri Oct 03 2008 - 08:43:39 CDT)
Problems after installation (ubuntu 8.04) Tomek Wlodarski (Fri Oct 03 2008 - 07:23:25 CDT)
Re: atom type bo liu (Fri Oct 03 2008 - 06:51:22 CDT)
Problem with creating psf file from structure made by inorganic builder Anneta Tzampazi (Fri Oct 03 2008 - 04:43:19 CDT)
TAB key in vmd terminal BIN ZHANG (Thu Oct 02 2008 - 23:32:00 CDT)
Re: atom type Rudra Banerjee (Thu Oct 02 2008 - 22:57:47 CDT)
Re: atom type Axel Kohlmeyer (Thu Oct 02 2008 - 13:16:47 CDT)
Re: suggested graphic card for Mac Pro John Stone (Thu Oct 02 2008 - 12:22:39 CDT)
Re: atom type Rudra Banerjee (Thu Oct 02 2008 - 12:14:25 CDT)
suggested graphic card for Mac Pro Joaquim Rui Rodrigues (Thu Oct 02 2008 - 12:09:32 CDT)
Re: volumetric maps John Stone (Thu Oct 02 2008 - 12:05:19 CDT)
Re: volumetric maps Axel Kohlmeyer (Thu Oct 02 2008 - 10:57:45 CDT)
volumetric maps markus.mooslechner_at_chello.at (Thu Oct 02 2008 - 07:18:38 CDT)
volumetric maps markus.mooslechner_at_chello.at (Thu Oct 02 2008 - 07:08:11 CDT)
Re: Re: Does VMD support cfg file format? John Stone (Wed Oct 01 2008 - 12:57:19 CDT)
Re: Re: Does VMD support cfg file format? zhjjvmd (Wed Oct 01 2008 - 12:00:33 CDT)
Re: Re: Does VMD support cfg file format? zhjjvmd (Wed Oct 01 2008 - 11:58:06 CDT)
Re: atom type Boris Steipe (Wed Oct 01 2008 - 11:37:48 CDT)
Re: Does VMD support cfg file format? John Stone (Wed Oct 01 2008 - 11:03:05 CDT)
Does VMD support cfg file format? zhjjvmd (Wed Oct 01 2008 - 03:52:32 CDT)
atom type Rudra Banerjee (Tue Sep 30 2008 - 23:28:58 CDT)
Re: water box Alexander A. Vakhrushev (Tue Sep 30 2008 - 09:24:43 CDT)
Re: water box Alexander A. Vakhrushev (Tue Sep 30 2008 - 04:55:46 CDT)
water box Rudra Banerjee (Tue Sep 30 2008 - 03:48:37 CDT)
Re: electrostatic potential John Stone (Mon Sep 29 2008 - 16:57:39 CDT)
Re: question about sscache qwang_at_mail.uh.edu (Mon Sep 29 2008 - 11:44:35 CDT)
periodic box image in tcl script Brian Kidd (Mon Sep 29 2008 - 11:27:39 CDT)
Re: question about sscache John Stone (Mon Sep 29 2008 - 10:03:46 CDT)
Re: question about sscache Margaret S. Cheung (Sun Sep 28 2008 - 21:04:56 CDT)
question about sscache qwang_at_mail.uh.edu (Sun Sep 28 2008 - 19:33:02 CDT)
Re: Axel Kohlmeyer (Sun Sep 28 2008 - 13:15:18 CDT)
(no subject) studier_at_life.illinois.edu (Sat Sep 27 2008 - 16:22:10 CDT)
Re: question about sscache Alexander A. Vakhrushev (Fri Sep 26 2008 - 22:41:50 CDT)
question about sscache qwang_at_mail.uh.edu (Fri Sep 26 2008 - 14:00:07 CDT)
Re: visualisation problem with bonds and PBC Axel Kohlmeyer (Fri Sep 26 2008 - 11:46:39 CDT)
Re: electrostatic potential Raluca Mihaela ANDREI (Fri Sep 26 2008 - 09:38:52 CDT)
visualisation problem with bonds and PBC Jennifer Williams (Fri Sep 26 2008 - 09:32:42 CDT)
Re: Atoms numbers in VMD Leandro Martínez (Thu Sep 25 2008 - 14:56:01 CDT)
Re: Creating a cuboid box to fit in atoms Leandro Martínez (Thu Sep 25 2008 - 14:51:00 CDT)
Atoms numbers in VMD Nd S (Thu Sep 25 2008 - 14:07:30 CDT)
Creating a cuboid box to fit in atoms Ananyo Bandyopadhyay (Thu Sep 25 2008 - 13:29:15 CDT)
Re: How to render an image like this one with VMD? Anton Arkhipov (Thu Sep 25 2008 - 11:29:20 CDT)
Re: psf file generation: once again Peter Freddolino (Thu Sep 25 2008 - 08:12:34 CDT)
Re: psf file generation: once again Rudra Banerjee (Wed Sep 24 2008 - 23:42:22 CDT)
Re: psf file generation: once again Rudra Banerjee (Wed Sep 24 2008 - 23:11:04 CDT)
Re: psf file generation: once again Peter Freddolino (Wed Sep 24 2008 - 23:01:48 CDT)
psf file generation: once again Rudra Banerjee (Wed Sep 24 2008 - 22:45:49 CDT)
Re: How to render an image like this one with VMD? Peter Freddolino (Wed Sep 24 2008 - 21:49:25 CDT)
How to render an image like this one with VMD? Dong Xu (Wed Sep 24 2008 - 20:58:12 CDT)
water residence time L. Michel Espinoza-Fonseca (Wed Sep 24 2008 - 15:56:53 CDT)
Re: Help, my molecule is being destroyed John Stone (Wed Sep 24 2008 - 15:46:14 CDT)
Re: Movie maker problem in VMD L. Michel Espinoza-Fonseca (Wed Sep 24 2008 - 11:56:11 CDT)
Movie maker problem in VMD Ananyo Bandyopadhyay (Wed Sep 24 2008 - 11:11:14 CDT)
Re: electrostatic potential John Stone (Wed Sep 24 2008 - 10:50:29 CDT)
Re: electrostatic potential Raluca Mihaela ANDREI (Wed Sep 24 2008 - 10:46:54 CDT)
Re: namd-l: solvate a molecule Rudra Banerjee (Tue Sep 23 2008 - 22:32:53 CDT)
weird behavior with RMSD Irene Newhouse (Tue Sep 23 2008 - 16:21:02 CDT)
Re: viewing an embryo Axel Kohlmeyer (Tue Sep 23 2008 - 15:10:02 CDT)
Re: viewing an embryo Anton Arkhipov (Tue Sep 23 2008 - 15:03:01 CDT)
RE: viewing an embryo markt_at_mskcc.org (Tue Sep 23 2008 - 14:54:19 CDT)
Re: viewing an embryo Leandro Martínez (Tue Sep 23 2008 - 14:48:30 CDT)
Re: viewing an embryo Anton Arkhipov (Tue Sep 23 2008 - 14:37:15 CDT)
viewing an embryo markt_at_mskcc.org (Tue Sep 23 2008 - 14:04:41 CDT)
Re: Solvation Box Leandro Martínez (Tue Sep 23 2008 - 13:20:52 CDT)
Re: namd-l: solvate a molecule Chang, Christopher (Tue Sep 23 2008 - 11:57:58 CDT)
Re: solvate a molecule Chang, Christopher (Tue Sep 23 2008 - 11:47:37 CDT)
Re: Solvation Box Robert Brunner (Tue Sep 23 2008 - 11:32:42 CDT)
Re: Periodic BC Olaf Lenz (Tue Sep 23 2008 - 02:47:30 CDT)
Re: solvate a molecule John Stone (Mon Sep 22 2008 - 23:59:54 CDT)
Re: solvate a molecule Rudra Banerjee (Mon Sep 22 2008 - 23:52:34 CDT)
Re: trouble with running vmd after installation , machine gets hung shiladitya_at_jncasr.ac.in (Mon Sep 22 2008 - 18:45:30 CDT)
Periodic BC Nd S (Mon Sep 22 2008 - 15:26:20 CDT)
Re: rotation around phi/psi Roman Petrenko (Sun Sep 21 2008 - 14:46:00 CDT)
Re: trouble with running vmd after installation , machine gets hung Axel Kohlmeyer (Sun Sep 21 2008 - 03:13:41 CDT)
Re: trouble with running vmd after installation , machine gets hung John Stone (Sun Sep 21 2008 - 02:36:43 CDT)
Re: trouble with running vmd after installation , machine gets hung shiladitya_at_jncasr.ac.in (Sat Sep 20 2008 - 23:14:50 CDT)
Re: solvate a molecule Rudra Banerjee (Sat Sep 20 2008 - 09:47:50 CDT)
Re: Projection of a vector on to another. bo liu (Sat Sep 20 2008 - 06:09:46 CDT)
Re: Restarting a simulation $ Langevin John Stone (Sat Sep 20 2008 - 02:20:34 CDT)
Re: electrostatic potential John Stone (Sat Sep 20 2008 - 02:19:15 CDT)
Re: solvate a molecule John Stone (Sat Sep 20 2008 - 02:12:59 CDT)
Re: Projection of a vector on to another. John Stone (Sat Sep 20 2008 - 02:11:41 CDT)
Re: rotation around phi/psi John Stone (Sat Sep 20 2008 - 02:05:49 CDT)
solvate a molecule Rudra Banerjee (Sat Sep 20 2008 - 01:08:03 CDT)
Re: Projection of a vector on to another. bo liu (Fri Sep 19 2008 - 23:03:42 CDT)
rotation around phi/psi Roman Petrenko (Fri Sep 19 2008 - 21:05:24 CDT)
Solvation Box Navdeep (Fri Sep 19 2008 - 16:43:25 CDT)
Re: difficulty in installing VMD on linux. John Stone (Fri Sep 19 2008 - 15:11:32 CDT)
Projection of a vector on to another. Katherine Parra (Fri Sep 19 2008 - 13:56:01 CDT)
Re: running simulation on dual core processor JC Gumbart (Fri Sep 19 2008 - 13:50:27 CDT)
Re: namd-l: Re: counting gas molecules inside the nanotube bo liu (Fri Sep 19 2008 - 11:38:19 CDT)
running simulation on dual core processor Mamta Mohan (Fri Sep 19 2008 - 10:44:27 CDT)
Restarting a simulation $ Langevin Anirban Ghosh (Fri Sep 19 2008 - 07:17:12 CDT)
Re: trouble with running vmd after installation , machine gets hung Axel Kohlmeyer (Fri Sep 19 2008 - 06:05:42 CDT)
difficulty in installing VMD on linux. Deepti Mishra (Fri Sep 19 2008 - 05:47:18 CDT)
trouble with running vmd after installation , machine gets hung shiladitya_at_jncasr.ac.in (Fri Sep 19 2008 - 04:30:01 CDT)
Re: Error generating psf files Peter Freddolino (Thu Sep 18 2008 - 22:45:03 CDT)
Re: Error generating psf files Nd S (Thu Sep 18 2008 - 22:30:05 CDT)
Re: Error generating psf files Peter Freddolino (Thu Sep 18 2008 - 22:14:25 CDT)
Re: Solid Support Problem Peter Freddolino (Thu Sep 18 2008 - 22:10:46 CDT)
Re: Error generating psf files Nd S (Thu Sep 18 2008 - 22:05:07 CDT)
Re: psfgen problem Rudra Banerjee (Thu Sep 18 2008 - 21:48:08 CDT)
Re: Error generating psf files Peter Freddolino (Thu Sep 18 2008 - 20:18:14 CDT)
Error generating psf files Nd S (Thu Sep 18 2008 - 18:55:28 CDT)
Solid Support Problem Christopher Hartshorn (Thu Sep 18 2008 - 13:33:07 CDT)
Fw: warning during psfgen file Mamta Mohan (Thu Sep 18 2008 - 13:08:29 CDT)
Re: counting gas molecules inside the nanotube John Stone (Thu Sep 18 2008 - 12:29:34 CDT)
Re: counting gas molecules inside the nanotube Alexander A. Vakhrushev (Thu Sep 18 2008 - 12:11:04 CDT)
Re: counting gas molecules inside the nanotube John Stone (Thu Sep 18 2008 - 11:18:43 CDT)
Re: Trouble installing VMD on LINUX machine SOLVED Gregor Kladnik (Thu Sep 18 2008 - 11:18:40 CDT)
Re: Trouble installing VMD on LINUX machine John Stone (Thu Sep 18 2008 - 11:06:45 CDT)
Re: psfgen problem L. Michel Espinoza-Fonseca (Thu Sep 18 2008 - 10:13:55 CDT)
warning during psfgen file Mamta Mohan (Thu Sep 18 2008 - 10:11:33 CDT)
Re: psfgen problem Rudra Banerjee (Thu Sep 18 2008 - 09:34:14 CDT)
Re: electrostatic potential Raluca Mihaela ANDREI (Thu Sep 18 2008 - 07:33:00 CDT)
Re: psfgen problem Peter Freddolino (Thu Sep 18 2008 - 07:18:15 CDT)
counting gas molecules inside the nanotube mishacat_at_udm.ru (Thu Sep 18 2008 - 06:52:51 CDT)
Trouble installing VMD on LINUX machine Gregor Kladnik (Thu Sep 18 2008 - 06:43:14 CDT)
RE: problem downloading VMD 1.8.6 source code Lai, Massimo (Thu Sep 18 2008 - 04:21:38 CDT)
Re: problem with psf file generation Rudra Banerjee (Thu Sep 18 2008 - 03:29:07 CDT)
psfgen problem Rudra Banerjee (Thu Sep 18 2008 - 01:45:55 CDT)
problem with psf file generation Rudra Banerjee (Thu Sep 18 2008 - 01:12:44 CDT)
Re: regarding rotating dihedral Peter Freddolino (Wed Sep 17 2008 - 22:39:40 CDT)
Re: regarding rotating dihedral John Stone (Wed Sep 17 2008 - 21:58:14 CDT)
Re: Interface Propensity John Stone (Wed Sep 17 2008 - 21:53:13 CDT)
Re: solvation John Stone (Wed Sep 17 2008 - 21:46:39 CDT)
Re: apbs electrostatics John Stone (Wed Sep 17 2008 - 21:42:28 CDT)
apbs electrostatics James Haven (Wed Sep 17 2008 - 15:15:08 CDT)
solvation Mamta Mohan (Wed Sep 17 2008 - 13:28:55 CDT)
Re: simulation image question John Stone (Wed Sep 17 2008 - 12:57:37 CDT)
simulation image question Mamta Mohan (Wed Sep 17 2008 - 12:42:34 CDT)
Re: problem downloading VMD 1.8.6 source code John Stone (Wed Sep 17 2008 - 10:40:41 CDT)
problem downloading VMD 1.8.6 source code Lai, Massimo (Wed Sep 17 2008 - 09:59:40 CDT)
Re: Installing VMD on Fedora Peter Freddolino (Wed Sep 17 2008 - 07:18:07 CDT)
Interface Propensity bo baker (Wed Sep 17 2008 - 05:56:20 CDT)
Re: Installing VMD on Fedora Neelanjana Sengupta (Wed Sep 17 2008 - 03:32:02 CDT)
regarding rotating dihedral jani sahil (Tue Sep 16 2008 - 22:26:17 CDT)
Re: Tachyon render and Tcl scripting John Stone (Tue Sep 16 2008 - 14:00:06 CDT)
Re: parallel VMD John Stone (Tue Sep 16 2008 - 13:35:03 CDT)
Re: electrostatic potential John Stone (Tue Sep 16 2008 - 11:01:18 CDT)
Re: Installing VMD on Fedora John Stone (Tue Sep 16 2008 - 10:58:40 CDT)
Installing VMD on Fedora Neelanjana Sengupta (Tue Sep 16 2008 - 08:25:54 CDT)
parallel VMD Benjamin Stauch (Tue Sep 16 2008 - 07:47:16 CDT)
electrostatic potential Raluca Mihaela ANDREI (Tue Sep 16 2008 - 03:28:02 CDT)
Re: extract centers et radii of beads model John Stone (Mon Sep 15 2008 - 16:11:20 CDT)
extract centers et radii of beads model Matthieu Chavent (Mon Sep 15 2008 - 13:25:13 CDT)
Fwd: ACS awards John Stone (Mon Sep 15 2008 - 12:53:34 CDT)
Tachyon render and Tcl scripting Shay Amram (Mon Sep 15 2008 - 11:42:00 CDT)
Re: How to ionize a Shape Based CG Model? Peter Freddolino (Mon Sep 15 2008 - 10:21:44 CDT)
Re: How to ionize a Shape Based CG Model? Anton Arkhipov (Mon Sep 15 2008 - 10:15:23 CDT)
Re: How to ionize a Shape Based CG Model? L. Michel Espinoza-Fonseca (Mon Sep 15 2008 - 10:02:27 CDT)
Re: How to ionize a Shape Based CG Model? Anton Arkhipov (Mon Sep 15 2008 - 09:10:04 CDT)
How to ionize a Shape Based CG Model? Anirban Ghosh (Mon Sep 15 2008 - 08:09:07 CDT)
Re: Alias histidine residue Roman Petrenko (Sat Sep 13 2008 - 22:07:46 CDT)
Re: Alias histidine residue Roman Petrenko (Sat Sep 13 2008 - 22:04:46 CDT)
Re: Alias histidine residue Axel Kohlmeyer (Sat Sep 13 2008 - 09:09:31 CDT)
Alias histidine residue Rabab Toubar (Fri Sep 12 2008 - 23:31:47 CDT)
a VMD script similar to "Rahmachandran plot' applicable to nucleic acids ? Maxim Paliy (Fri Sep 12 2008 - 19:14:04 CDT)
Re: problems with VMD under linux/64-bit machine John Stone (Fri Sep 12 2008 - 16:03:48 CDT)
problems with VMD under linux/64-bit machine Irene Newhouse (Fri Sep 12 2008 - 15:17:56 CDT)
Re: Rendering problem John Stone (Fri Sep 12 2008 - 11:27:01 CDT)
Re: How to use Inorganic Builder Robert Brunner (Fri Sep 12 2008 - 10:19:45 CDT)
How to use Inorganic Builder Nd S (Fri Sep 12 2008 - 03:19:12 CDT)
Re: problems with autopsf & psfgen JC Gumbart (Fri Sep 12 2008 - 02:51:03 CDT)
Re: Rendering problem Axel Kohlmeyer (Fri Sep 12 2008 - 01:25:43 CDT)
Re: psfgen - loss of disulfide bonds Roman Petrenko (Thu Sep 11 2008 - 22:50:34 CDT)
Re: psfgen - loss of disulfide bonds Peter Freddolino (Thu Sep 11 2008 - 22:33:18 CDT)
psfgen - loss of disulfide bonds Rabab Toubar (Thu Sep 11 2008 - 21:35:53 CDT)
Rendering problem lillestolen (Thu Sep 11 2008 - 14:16:29 CDT)
Re: Volume slice-I: slice color John Stone (Thu Sep 11 2008 - 11:06:03 CDT)
Re: Calculating the torsion angles in nucleic acids Peter Freddolino (Thu Sep 11 2008 - 08:52:36 CDT)
Volume slice-I: slice color pontes_at_if.usp.br (Thu Sep 11 2008 - 07:22:07 CDT)
Calculating the torsion angles in nucleic acids mon_sharma_at_research.iiit.ac.in (Thu Sep 11 2008 - 06:40:54 CDT)
Measure hbonds equivalent in Python interface? Chang, Christopher (Wed Sep 10 2008 - 18:52:43 CDT)
Re: Volume slice: slice color John Stone (Wed Sep 10 2008 - 14:07:04 CDT)
Volume slice: slice color pontes_at_if.usp.br (Wed Sep 10 2008 - 10:31:55 CDT)
Re: long bonds Axel Kohlmeyer (Wed Sep 10 2008 - 10:23:18 CDT)
long bonds Marcelo Carignano (Wed Sep 10 2008 - 07:35:36 CDT)
problems with autopsf & psfgen Irene Newhouse (Tue Sep 09 2008 - 13:50:10 CDT)
Re: Extensions menu is blank Janet Jacobsen (Tue Sep 09 2008 - 12:07:24 CDT)
Re: Extensions menu is blank John Stone (Tue Sep 09 2008 - 10:52:00 CDT)
Re: solvating a water molecule John Stone (Tue Sep 09 2008 - 01:48:46 CDT)
Re: How to generate more segments? John Stone (Tue Sep 09 2008 - 01:46:41 CDT)
How to generate more segments? mishacat_at_udm.ru (Tue Sep 09 2008 - 01:30:05 CDT)
Re: solvating a water molecule gaurav nandrajog (Tue Sep 09 2008 - 01:01:33 CDT)
Extensions menu is blank Janet Jacobsen (Mon Sep 08 2008 - 18:46:07 CDT)
Re: saving charges Axel Kohlmeyer (Mon Sep 08 2008 - 14:13:46 CDT)
saving charges snoze pa (Mon Sep 08 2008 - 12:14:15 CDT)
Re: solvating a water molecule John Stone (Mon Sep 08 2008 - 11:41:45 CDT)
Re: Concerning protein rotation John Stone (Mon Sep 08 2008 - 11:25:47 CDT)
Re: Superimposition: atomselect for reverse topology John Stone (Mon Sep 08 2008 - 11:16:37 CDT)
Re: feedback on pc-over-ip technology? John Stone (Mon Sep 08 2008 - 11:07:09 CDT)
feedback on pc-over-ip technology? Tru Huynh (Mon Sep 08 2008 - 10:40:24 CDT)
Concerning protein rotation Anneta Tzampazi (Mon Sep 08 2008 - 05:22:40 CDT)
Re: Superimposition: atomselect for reverse topology Axel Kohlmeyer (Sun Sep 07 2008 - 14:09:44 CDT)
Re: generate psf structure Axel Kohlmeyer (Sun Sep 07 2008 - 13:50:39 CDT)
Re: how to draw the bonds in VMD? Axel Kohlmeyer (Sun Sep 07 2008 - 13:41:30 CDT)
Superimposition: atomselect for reverse topology guillaume.santini_at_free.fr (Sat Sep 06 2008 - 09:34:52 CDT)
generate psf structure Rudra Banerjee (Sat Sep 06 2008 - 04:15:25 CDT)
how to draw the bonds in VMD? Alfred Shaohui Zheng (Sat Sep 06 2008 - 03:07:16 CDT)
Re: Protein coordinate rotation John Stone (Fri Sep 05 2008 - 13:07:55 CDT)
Protein coordinate rotation ianboru_at_email.arizona.edu (Fri Sep 05 2008 - 12:40:48 CDT)
Re: Running without interface Axel Kohlmeyer (Thu Sep 04 2008 - 12:06:44 CDT)
Running without interface Emily Moore (Thu Sep 04 2008 - 11:29:02 CDT)
Re: DIHE in topology file Peter Freddolino (Thu Sep 04 2008 - 07:51:51 CDT)
DIHE in topology file politr_at_huji.ac.il (Thu Sep 04 2008 - 02:31:52 CDT)
Re: Re: CONECT Records in .pdb file - bonds not getting plotted John Stone (Wed Sep 03 2008 - 14:01:23 CDT)
Re: CONECT Records in .pdb file - bonds not getting plotted Paul T. Bauman (Wed Sep 03 2008 - 11:53:37 CDT)
CONECT Records in .pdb file - bonds not getting plotted Paul T. Bauman (Wed Sep 03 2008 - 10:42:10 CDT)
Re: Merge psf and pdb bo liu (Wed Sep 03 2008 - 00:17:13 CDT)
Re: solvating a water molecule Rabab Toubar (Tue Sep 02 2008 - 22:35:50 CDT)
Re: solvating a water molecule John Stone (Tue Sep 02 2008 - 16:16:49 CDT)
Re: newbie issues Axel Kohlmeyer (Tue Sep 02 2008 - 14:10:19 CDT)
Re: pbc join Olaf Lenz (Tue Sep 02 2008 - 14:14:17 CDT)
Re: Is position dependent color possible? Suman Chakrabarty (Tue Sep 02 2008 - 14:02:55 CDT)
Re: Py_atomsel.C: invalid conversion Chang, Christopher (Tue Sep 02 2008 - 13:59:12 CDT)
solvating a water molecule Rabab Toubar (Tue Sep 02 2008 - 13:54:47 CDT)
newbie issues markus mooslechner (Tue Sep 02 2008 - 13:39:19 CDT)
pbc join Edward Lyman (Tue Sep 02 2008 - 13:34:46 CDT)
Re: Is position dependent color possible? Suman Chakrabarty (Tue Sep 02 2008 - 13:27:02 CDT)
Re: Is position dependent color possible? John Stone (Tue Sep 02 2008 - 12:28:06 CDT)
Is position dependent color possible? Suman Chakrabarty (Tue Sep 02 2008 - 12:17:59 CDT)
Re: Merge psf and pdb Axel Kohlmeyer (Tue Sep 02 2008 - 10:46:07 CDT)
Re: Merge psf and pdb bo liu (Tue Sep 02 2008 - 10:02:26 CDT)
Re: Merge psf and pdb Axel Kohlmeyer (Tue Sep 02 2008 - 08:15:39 CDT)
Merge psf and pdb max_at_liaad.up.pt (Tue Sep 02 2008 - 04:28:53 CDT)
Re: algorithm for finding center of mass of the side chains in the protein Ramya Gamini (Fri Aug 29 2008 - 14:28:15 CDT)
Re: TXT program editor Alejandro Ortega (Fri Aug 29 2008 - 13:11:13 CDT)
Re: Py_atomsel.C: invalid conversion John Stone (Fri Aug 29 2008 - 13:05:06 CDT)
Py_atomsel.C: invalid conversion Chang, Christopher (Fri Aug 29 2008 - 13:01:04 CDT)
Re: TXT program editor L. Michel Espinoza-Fonseca (Fri Aug 29 2008 - 10:58:59 CDT)
Re: TXT program editor Peter Freddolino (Fri Aug 29 2008 - 09:34:29 CDT)
Re: TXT program editor Suman Chakrabarty (Fri Aug 29 2008 - 08:38:29 CDT)
algorithm for finding center of mass of the side chains in the protein aneesh cna (Fri Aug 29 2008 - 07:26:26 CDT)
Re: TXT program editor bo liu (Fri Aug 29 2008 - 03:17:57 CDT)
Re: HOLE PROGRAM John Stone (Fri Aug 29 2008 - 02:08:14 CDT)
Re: catDCD John Stone (Fri Aug 29 2008 - 01:45:45 CDT)
Re: TXT program editor Emily Moore (Thu Aug 28 2008 - 18:13:01 CDT)
Re: TXT program editor Axel Kohlmeyer (Thu Aug 28 2008 - 17:51:39 CDT)
Re: Calculating pocket volume Peter Freddolino (Thu Aug 28 2008 - 17:27:44 CDT)
Re: TXT program editor Emily Moore (Thu Aug 28 2008 - 17:09:42 CDT)
Re: TXT program editor Sabuj Pattanayek (Thu Aug 28 2008 - 17:03:11 CDT)
Calculating pocket volume ben rodriguez (Thu Aug 28 2008 - 16:37:55 CDT)
Re: namd-l: TXT program editor Giovanni Bellesia (Thu Aug 28 2008 - 16:21:03 CDT)
Re: TXT program editor Axel Kohlmeyer (Thu Aug 28 2008 - 15:50:21 CDT)
Re: TXT program editor Peter Freddolino (Thu Aug 28 2008 - 15:06:53 CDT)
TXT program editor Alejandro Ortega (Thu Aug 28 2008 - 14:43:14 CDT)
Re: namd-l: diffusion coefficient from rmsd bo liu (Thu Aug 28 2008 - 01:38:38 CDT)
Re: namd-l: diffusion coefficient from rmsd Axel Kohlmeyer (Wed Aug 27 2008 - 22:39:52 CDT)
Re: catDCD Peter Freddolino (Wed Aug 27 2008 - 22:04:10 CDT)
diffusion coefficient from rmsd Rudra Banerjee (Wed Aug 27 2008 - 21:55:28 CDT)
HOLE PROGRAM Semorale (Wed Aug 27 2008 - 18:23:10 CDT)
Re: catDCD Robert Fenwick (Wed Aug 27 2008 - 12:16:14 CDT)
Re: catDCD John Stone (Wed Aug 27 2008 - 11:58:58 CDT)
catDCD Robert Fenwick (Wed Aug 27 2008 - 08:01:38 CDT)
Re: segfault using VMD 1.8.6 32-bit Linux and chromium 1.9 Chris Berthiaume (Tue Aug 26 2008 - 12:23:11 CDT)
Re: segfault using VMD 1.8.6 32-bit Linux and chromium 1.9 John Stone (Mon Aug 25 2008 - 22:45:15 CDT)
again :resid of water that is H bonded nahren manuel (Mon Aug 25 2008 - 21:55:40 CDT)
segfault using VMD 1.8.6 32-bit Linux and chromium 1.9 Chris Berthiaume (Mon Aug 25 2008 - 20:50:12 CDT)
Re: measure gofr - how is g(r) normalised? Axel Kohlmeyer (Mon Aug 25 2008 - 15:14:35 CDT)
Re: resid of water that is hydrogen bonded Axel Kohlmeyer (Mon Aug 25 2008 - 14:56:41 CDT)
Re: Failure to open PDB files Axel Kohlmeyer (Mon Aug 25 2008 - 14:52:38 CDT)
Failure to open PDB files hzf101_at_psu.edu (Mon Aug 25 2008 - 13:12:52 CDT)
resid of water that is hydrogen bonded nahren manuel (Mon Aug 25 2008 - 07:35:22 CDT)
measure gofr - how is g(r) normalised? Maxim Paliy (Mon Aug 25 2008 - 05:07:37 CDT)
Re: Inorganic Builder Plugin Robert Brunner (Thu Aug 21 2008 - 08:31:19 CDT)
Re: Inorganic Builder Plugin John Stone (Wed Aug 20 2008 - 23:01:45 CDT)
Re: Python callbacks in VMD John Stone (Wed Aug 20 2008 - 22:59:53 CDT)
Python callbacks in VMD James E. Magee (Wed Aug 20 2008 - 06:41:52 CDT)
Inorganic Builder Plugin max_at_liaad.up.pt (Wed Aug 20 2008 - 04:57:09 CDT)
Re: Trouble updating frames in script Axel Kohlmeyer (Tue Aug 19 2008 - 15:14:42 CDT)
Re: Trouble updating frames in script Emily Moore (Tue Aug 19 2008 - 14:23:29 CDT)
Re: Trouble updating frames in script Axel Kohlmeyer (Tue Aug 19 2008 - 13:06:44 CDT)
Trouble updating frames in script Emily Moore (Tue Aug 19 2008 - 12:21:11 CDT)
Re: rmsd John Stone (Tue Aug 19 2008 - 01:02:57 CDT)
Re: RMSD SCRIPT John Stone (Tue Aug 19 2008 - 01:01:07 CDT)
Re: axes John Stone (Tue Aug 19 2008 - 00:54:31 CDT)
Re: how to call dssp in a script John Stone (Mon Aug 18 2008 - 11:17:44 CDT)
Re: how to call dssp in a script Axel Kohlmeyer (Mon Aug 18 2008 - 10:42:14 CDT)
how to call dssp in a script Yuan Feng (Sun Aug 17 2008 - 18:51:56 CDT)
Re: Question about trace vmd_frame(molid) Axel Kohlmeyer (Fri Aug 15 2008 - 13:55:54 CDT)
Re: Question about trace vmd_frame(molid) Oren Elrad (Fri Aug 15 2008 - 13:24:25 CDT)
Re: Question about trace vmd_frame(molid) Axel Kohlmeyer (Fri Aug 15 2008 - 12:12:03 CDT)
Question about trace vmd_frame(molid) Oren Elrad (Fri Aug 15 2008 - 11:33:02 CDT)
RMSD SCRIPT Semorale (Fri Aug 15 2008 - 05:12:11 CDT)
Re: LAMMPS Trajectory Bond Specification Axel Kohlmeyer (Thu Aug 14 2008 - 16:24:13 CDT)
Re: LAMMPS Trajectory Bond Specification Nazanin Samadi (Thu Aug 14 2008 - 15:24:45 CDT)
LAMMPS Trajectory Bond Specification nicholas lee (Thu Aug 14 2008 - 14:25:07 CDT)
Re: Tetrahedral representation John Stone (Wed Aug 13 2008 - 18:14:03 CDT)
Re: renumbering residues John Stone (Wed Aug 13 2008 - 18:00:59 CDT)
axes Nazanin Samadi (Wed Aug 13 2008 - 14:21:06 CDT)
renumbering residues Roman Petrenko (Wed Aug 13 2008 - 13:50:44 CDT)
Re: Tetrahedral representation John Stone (Wed Aug 13 2008 - 13:07:04 CDT)
Re: catDCD- convert DCD format John Stone (Wed Aug 13 2008 - 10:58:21 CDT)
Re: label all residues Peter Freddolino (Wed Aug 13 2008 - 10:29:20 CDT)
label all residues Roman Petrenko (Wed Aug 13 2008 - 10:09:17 CDT)
Re: Depth Cueing and dispdev none John Stone (Wed Aug 13 2008 - 09:56:44 CDT)
Re: rdf for big systems Valeria Molinero (Tue Aug 12 2008 - 18:35:42 CDT)
Re: Depth Cueing and dispdev none Oleg Stroganov (Tue Aug 12 2008 - 18:03:29 CDT)
catDCD- convert DCD format Semorale (Tue Aug 12 2008 - 16:10:27 CDT)
Re: protein-water hydrogen bonds Axel Kohlmeyer (Tue Aug 12 2008 - 10:53:35 CDT)
Re: protein-water hydrogen bonds Roman Petrenko (Tue Aug 12 2008 - 10:52:32 CDT)
Re: protein-water hydrogen bonds Axel Kohlmeyer (Tue Aug 12 2008 - 10:37:45 CDT)
protein-water hydrogen bonds Roman Petrenko (Tue Aug 12 2008 - 10:05:46 CDT)
Re: Depth Cueing and dispdev none John Stone (Mon Aug 11 2008 - 14:13:55 CDT)
rmsd Shadi Mirzae (Mon Aug 11 2008 - 13:52:14 CDT)
Re: rdf for big systems Axel Kohlmeyer (Mon Aug 11 2008 - 13:35:11 CDT)
Re: suggested video card for linux Burcin Temel (Mon Aug 11 2008 - 12:13:06 CDT)
Re: rdf for big systems John Stone (Mon Aug 11 2008 - 11:45:07 CDT)
Re: rdf for big systems Valeria Molinero (Mon Aug 11 2008 - 11:40:45 CDT)
Re: save selected residues Axel Kohlmeyer (Mon Aug 11 2008 - 11:01:48 CDT)
Re: save selected residues bo baker (Mon Aug 11 2008 - 06:31:12 CDT)
Re: problem controlling orientation of the simulation box drawn by pbctools Axel Kohlmeyer (Sun Aug 10 2008 - 11:11:34 CDT)
problem controlling orientation of the simulation box drawn by pbctools shiladitya_at_jncasr.ac.in (Sun Aug 10 2008 - 10:52:54 CDT)
Re: save selected residues Axel Kohlmeyer (Sun Aug 10 2008 - 09:48:15 CDT)
save selected residues bo baker (Sun Aug 10 2008 - 06:04:37 CDT)
Re: backbone dihedral angles over trajectory Giovanni Bellesia (Fri Aug 08 2008 - 17:36:44 CDT)
backbone dihedral angles over trajectory Roman Petrenko (Fri Aug 08 2008 - 17:05:59 CDT)
Re: request ability to append in CatDCD (and NAMD) John Stone (Fri Aug 08 2008 - 14:45:52 CDT)
request ability to append in CatDCD (and NAMD) Andrew Jewett (Fri Aug 08 2008 - 14:15:46 CDT)
Depth Cueing and dispdev none Oleg Stroganov (Thu Aug 07 2008 - 16:10:36 CDT)
Re: VMD files to SDF John Stone (Thu Aug 07 2008 - 12:52:48 CDT)
VMD files to SDF max_at_liaad.up.pt (Thu Aug 07 2008 - 05:20:59 CDT)
Re: Problems with Newcartoon representation Cesar Luis Avila (Wed Aug 06 2008 - 14:28:00 CDT)
Re: Problems with Newcartoon representation John Stone (Wed Aug 06 2008 - 13:38:00 CDT)
Re: Problems with Newcartoon representation John Stone (Wed Aug 06 2008 - 11:33:28 CDT)
Re: rdf for big systems John Stone (Wed Aug 06 2008 - 11:24:27 CDT)
Problems with Newcartoon representation Cesar Luis Avila (Wed Aug 06 2008 - 11:17:58 CDT)
Re: NAMDENERGY crashing repeatedly Chandra Ramananjara (Tue Aug 05 2008 - 18:49:40 CDT)
Re: NAMDENERGY crashing repeatedly Peter Freddolino (Tue Aug 05 2008 - 16:26:52 CDT)
Re: How to embed 3-D image into powerpoint John Stone (Tue Aug 05 2008 - 14:17:47 CDT)
NAMDENERGY crashing repeatedly Chandra Ramananjara (Tue Aug 05 2008 - 09:27:12 CDT)
Re: How to reduce memory usage of a script? David Poger (Tue Aug 05 2008 - 02:18:05 CDT)
Re: How to reduce memory usage of a script? John Stone (Tue Aug 05 2008 - 00:36:59 CDT)
Re: How to reduce memory usage of a script? David Poger (Tue Aug 05 2008 - 00:24:10 CDT)
Re: How to reduce memory usage of a script? John Stone (Mon Aug 04 2008 - 21:44:48 CDT)
How to reduce memory usage of a script? David Poger (Mon Aug 04 2008 - 20:31:10 CDT)
Re: How to embed 3-D image into powerpoint Axel Kohlmeyer (Mon Aug 04 2008 - 15:57:41 CDT)
How to embed 3-D image into powerpoint Claw Isthelaw (Mon Aug 04 2008 - 15:15:33 CDT)
Re: Re: namdenergy and simulation with amber ff Peter Freddolino (Mon Aug 04 2008 - 11:50:31 CDT)
Re: suggested video card for linux John Stone (Mon Aug 04 2008 - 11:24:47 CDT)
suggested video card for linux Burcin Temel (Mon Aug 04 2008 - 07:32:03 CDT)
Re: SURF and broken surface John Stone (Fri Aug 01 2008 - 23:28:04 CDT)
SURF and broken surface Vivek Sharma (Fri Aug 01 2008 - 23:16:14 CDT)
Re: problem using pbc wrap: broken molecule Axel Kohlmeyer (Fri Aug 01 2008 - 16:29:59 CDT)
Re: problem using pbc wrap: broken molecule Peter Freddolino (Fri Aug 01 2008 - 15:24:51 CDT)
Re: problem using pbc wrap: broken molecule Jianhui Tian (Fri Aug 01 2008 - 10:52:45 CDT)
Re: problem using pbc wrap: broken molecule Peter Freddolino (Fri Aug 01 2008 - 10:14:47 CDT)
Re: problem using pbc wrap: broken molecule Axel Kohlmeyer (Fri Aug 01 2008 - 10:00:18 CDT)
Re: ionize with VMD a TOP file Axel Kohlmeyer (Fri Aug 01 2008 - 09:28:58 CDT)
Re: vmd-rmsd-color-tool Axel Kohlmeyer (Fri Aug 01 2008 - 09:27:35 CDT)
Re: Re: namdenergy and simulation with amber ff Peter Freddolino (Fri Aug 01 2008 - 08:24:36 CDT)
ionize with VMD a TOP file rebeca_at_mmb.pcb.ub.es (Fri Aug 01 2008 - 07:14:40 CDT)
vmd-rmsd-color-tool Bernhard Knapp (Fri Aug 01 2008 - 02:27:48 CDT)
Re: namdenergy and simulation with amber ff Alan (Fri Aug 01 2008 - 02:05:23 CDT)
problem using pbc wrap: broken molecule Jianhui Tian (Thu Jul 31 2008 - 20:32:47 CDT)
Re: Gromacs reading: Why scaling?? Axel Kohlmeyer (Thu Jul 31 2008 - 19:51:10 CDT)
Re: Gromacs reading: Why scaling?? Nicolas (Thu Jul 31 2008 - 19:32:16 CDT)
Re: Gromacs reading: Why scaling?? Nicolas Bigaouette (Thu Jul 31 2008 - 19:21:12 CDT)
Re: Gromacs reading: Why scaling?? Axel Kohlmeyer (Thu Jul 31 2008 - 19:11:11 CDT)
Gromacs reading: Why scaling?? Nicolas Bigaouette (Thu Jul 31 2008 - 18:33:26 CDT)
Re: VMD crasch John Stone (Thu Jul 31 2008 - 17:00:22 CDT)
Re: VMD crasch Eric H. Lee (Thu Jul 31 2008 - 16:11:33 CDT)
VMD crasch Lixia Jin Day (Thu Jul 31 2008 - 15:58:28 CDT)
Re: rdf for big systems John Stone (Thu Jul 31 2008 - 13:00:35 CDT)
Re: VMD with amber rst7 and parm7 files Axel Kohlmeyer (Thu Jul 31 2008 - 09:02:29 CDT)
Re: g(r) Axel Kohlmeyer (Thu Jul 31 2008 - 08:57:34 CDT)
VMD with amber rst7 and parm7 files Alan (Thu Jul 31 2008 - 03:26:33 CDT)
Re: g(r) Rudra Banerjee (Thu Jul 31 2008 - 00:46:01 CDT)
Hot repl1ca w4tches from 2008 Villa Tory Mohr (Wed Jul 30 2008 - 21:06:33 CDT)
RE: Vmd on Fedora 9 Al-Ali, Hassan (Wed Jul 30 2008 - 19:16:09 CDT)
Re: How to disable automatic view rotations? John Stone (Wed Jul 30 2008 - 15:50:09 CDT)
Re: How to disable automatic view rotations? John Stone (Wed Jul 30 2008 - 15:47:05 CDT)
Re: How to disable automatic view rotations? Roman Petrenko (Wed Jul 30 2008 - 15:37:41 CDT)
Re: Vmd on Fedora 9 Axel Kohlmeyer (Wed Jul 30 2008 - 15:24:29 CDT)
RE: Vmd on Fedora 9 Al-Ali, Hassan (Wed Jul 30 2008 - 15:12:38 CDT)
Re: g(r) Axel Kohlmeyer (Wed Jul 30 2008 - 14:31:55 CDT)
Re: How to disable automatic view rotations? John Stone (Wed Jul 30 2008 - 14:34:15 CDT)
How to disable automatic view rotations? Roman Petrenko (Wed Jul 30 2008 - 13:08:31 CDT)
Re: Vmd on Fedora 9 Axel Kohlmeyer (Wed Jul 30 2008 - 12:18:11 CDT)
g(r) Rudra Banerjee (Wed Jul 30 2008 - 12:13:40 CDT)
Vmd on Fedora 9 Al-Ali, Hassan (Wed Jul 30 2008 - 11:43:28 CDT)
Re: 3DConnexion SpaceNavigator in 1.8.7alpha30 on OS X John Stone (Wed Jul 30 2008 - 10:38:41 CDT)
Re: 3DConnexion SpaceNavigator in 1.8.7alpha30 on OS X Benjamin Bouvier (Wed Jul 30 2008 - 10:36:17 CDT)
Re: Selecting the sides of a benzene ring John Stone (Wed Jul 30 2008 - 10:31:50 CDT)
Re: 3DConnexion SpaceNavigator in 1.8.7alpha30 on OS X John Stone (Wed Jul 30 2008 - 10:25:53 CDT)
3DConnexion SpaceNavigator in 1.8.7alpha30 on OS X Benjamin Bouvier (Wed Jul 30 2008 - 09:37:32 CDT)
Re: Selecting the sides of a benzene ring Ignacio Fernández Galván (Wed Jul 30 2008 - 02:24:58 CDT)
Re: Selecting atoms that have real SASA greater than 0, Not using "Surface" Axel Kohlmeyer (Tue Jul 29 2008 - 20:40:30 CDT)
Re: Selecting atoms that have real SASA greater than 0, Not using "Surface" Christopher Gillespie (Tue Jul 29 2008 - 18:39:14 CDT)
Re: tcl script problem with "atomselect' combined with "measure fit ...order" Roman Petrenko (Tue Jul 29 2008 - 15:26:13 CDT)
Re: Python for OS X John Stone (Tue Jul 29 2008 - 14:09:57 CDT)
Re: Re: periodic boundary conditions (yes, i read the tutorials) John Stone (Tue Jul 29 2008 - 13:22:57 CDT)
RE: Multiseq refusing to load a structure due to taxonomy problem Robison, Keith (Tue Jul 29 2008 - 13:32:19 CDT)
Re: Multiseq refusing to load a structure due to taxonomy problem Elijah Roberts (Tue Jul 29 2008 - 13:17:04 CDT)
Re: Query John Stone (Tue Jul 29 2008 - 13:13:24 CDT)
tcl script problem with "atomselect' combined with "measure fit ...order" Loison Claire (Tue Jul 29 2008 - 09:16:36 CDT)
Query Kaur, Tarandeep (Tue Jul 29 2008 - 07:55:49 CDT)
Multiseq refusing to load a structure due to taxonomy problem Robison, Keith (Tue Jul 29 2008 - 08:22:24 CDT)
Re: Re: periodic boundary conditions (yes, i read the tutorials) Balazs Jojart (Tue Jul 29 2008 - 01:21:17 CDT)
Re: Re: periodic boundary conditions (yes, i read the tutorials) Axel Kohlmeyer (Mon Jul 28 2008 - 20:44:41 CDT)
Re: periodic boundary conditions (yes, i read the tutorials) Roman Petrenko (Mon Jul 28 2008 - 19:50:12 CDT)
periodic boundary conditions (yes, i read the tutorials) Roman Petrenko (Mon Jul 28 2008 - 19:46:09 CDT)
Re: solvating protein, fixed residue Axel Kohlmeyer (Mon Jul 28 2008 - 13:52:42 CDT)
solvating protein, fixed residue Rudra Banerjee (Mon Jul 28 2008 - 13:01:56 CDT)
Re: water box...density!!! Christopher Gillespie (Mon Jul 28 2008 - 09:43:47 CDT)
water box...density!!! Rudra Banerjee (Mon Jul 28 2008 - 05:02:55 CDT)
Re: solvation and box size Christopher Gillespie (Mon Jul 28 2008 - 07:33:37 CDT)
Re: solvation and box size Roman Petrenko (Mon Jul 28 2008 - 06:52:08 CDT)
Re: solvation and box size Axel Kohlmeyer (Mon Jul 28 2008 - 06:30:07 CDT)
solvation and box size Sue Legge (Mon Jul 28 2008 - 01:25:43 CDT)
RE: membrane plugin | lipid structures JC Gumbart (Sun Jul 27 2008 - 23:36:37 CDT)
Re: how to create dityrosine links Roman Petrenko (Sun Jul 27 2008 - 04:14:20 CDT)
Re: translation/transformation Roman Petrenko (Sun Jul 27 2008 - 04:09:35 CDT)
Re: translation/transformation Schreiner Eduard (Sun Jul 27 2008 - 02:16:58 CDT)
Re: translation/transformation Schreiner Eduard (Sun Jul 27 2008 - 01:52:20 CDT)
translation/transformation Roman Petrenko (Sat Jul 26 2008 - 23:31:36 CDT)
Re: how to create dityrosine links JC Gumbart (Sat Jul 26 2008 - 20:21:14 CDT)
how to create dityrosine links Roman Petrenko (Sat Jul 26 2008 - 17:47:52 CDT)
Re: Python for OS X Axel Kohlmeyer (Sat Jul 26 2008 - 12:56:18 CDT)
Re: question about using namdenergy.tcl with vmd -dispdev text -e *.tcl Margaret.Cheung_at_mail.uh.edu (Fri Jul 25 2008 - 18:41:40 CDT)
Re: question about using namdenergy.tcl with vmd -dispdev text -e *.tcl Peter Freddolino (Fri Jul 25 2008 - 17:31:16 CDT)
Python for OS X Hans Martin Senn (Fri Jul 25 2008 - 10:19:38 CDT)
question about using namdenergy.tcl with vmd -dispdev text -e *.tcl Margaret S. Cheung (Fri Jul 25 2008 - 08:38:20 CDT)
Slow mail deliver for next day or so... John Stone (Fri Jul 25 2008 - 15:15:09 CDT)
membrane plugin | lipid structures Jufang Shan (Fri Jul 25 2008 - 11:50:18 CDT)
Get your w4tch now Villa Joan Winslow (Thu Jul 24 2008 - 04:40:10 CDT)
Re: Selecting the sides of a benzene ring John Stone (Wed Jul 23 2008 - 09:15:18 CDT)
Re: Selecting the sides of a benzene ring Axel Kohlmeyer (Wed Jul 23 2008 - 06:36:25 CDT)
Re: questions relating to VolMapTool Axel Kohlmeyer (Wed Jul 23 2008 - 06:30:55 CDT)
Re: Selecting the sides of a benzene ring Ignacio Fernández Galván (Wed Jul 23 2008 - 02:39:23 CDT)
questions relating to VolMapTool bo liu (Wed Jul 23 2008 - 02:35:18 CDT)
Re: rdf for big systems Axel Kohlmeyer (Tue Jul 22 2008 - 19:09:09 CDT)
Re: rdf for big systems Valeria Molinero (Tue Jul 22 2008 - 18:58:25 CDT)
Re: rdf for big systems Axel Kohlmeyer (Tue Jul 22 2008 - 17:06:30 CDT)
rdf for big systems Valeria Molinero (Tue Jul 22 2008 - 16:23:04 CDT)
Re: Creating a VMD movie from a Tcl script John Stone (Tue Jul 22 2008 - 16:16:15 CDT)
Re: Creating a VMD movie from a Tcl script Axel Kohlmeyer (Tue Jul 22 2008 - 15:59:42 CDT)
Re: Problem writing trajectory to "crd" (Amber) format? John Stone (Tue Jul 22 2008 - 14:01:32 CDT)
Re: Creating a VMD movie from a Tcl script John Stone (Tue Jul 22 2008 - 13:51:41 CDT)
Re: vecsub command Axel Kohlmeyer (Tue Jul 22 2008 - 11:48:31 CDT)
Re: Selecting the sides of a benzene ring Axel Kohlmeyer (Tue Jul 22 2008 - 11:45:54 CDT)
Re: vecsub command Schreiner Eduard (Tue Jul 22 2008 - 11:40:13 CDT)
Re: Selecting the sides of a benzene ring Eduardo Cruz-Chu (Tue Jul 22 2008 - 11:21:42 CDT)
Re: Error message in VMD console when I try to switch to Python mode. Katherine Parra (Tue Jul 22 2008 - 11:07:56 CDT)
vecsub command Katherine Parra (Tue Jul 22 2008 - 11:03:42 CDT)
Re: Selecting the sides of a benzene ring Schreiner Eduard (Tue Jul 22 2008 - 11:01:39 CDT)
Selecting the sides of a benzene ring Ignacio Fernández Galván (Tue Jul 22 2008 - 06:30:21 CDT)
Re: Problem to find the number of frames of a trajectory John Stone (Tue Jul 22 2008 - 10:15:00 CDT)
Re: Problem to find the number of frames of a trajectory John Stone (Tue Jul 22 2008 - 00:50:30 CDT)
Re: Problem to find the number of frames of a trajectory David Poger (Mon Jul 21 2008 - 23:58:48 CDT)
Re: Problem to find the number of frames of a trajectory John Stone (Mon Jul 21 2008 - 23:50:56 CDT)
Problem to find the number of frames of a trajectory David Poger (Mon Jul 21 2008 - 20:19:01 CDT)
Re: Periodic image and transformation matrix Axel Kohlmeyer (Mon Jul 21 2008 - 19:50:24 CDT)
Re: Missing angles and dihedrals Axel Kohlmeyer (Mon Jul 21 2008 - 19:31:48 CDT)
Periodic image and transformation matrix Cesar Avila (Mon Jul 21 2008 - 19:20:06 CDT)
Re: Missing angles and dihedrals Schreiner Eduard (Mon Jul 21 2008 - 19:04:44 CDT)
Missing angles and dihedrals Rene Prieto (Mon Jul 21 2008 - 18:25:52 CDT)
Re: Creating a VMD movie from a Tcl script Axel Kohlmeyer (Mon Jul 21 2008 - 14:13:59 CDT)
Re: Creating a VMD movie from a Tcl script Samir Unni (Mon Jul 21 2008 - 15:18:22 CDT)
Re: Creating a VMD movie from a Tcl script Axel Kohlmeyer (Mon Jul 21 2008 - 14:09:46 CDT)
Re: Selecting atoms that have real SASA greater than 0, Not using "Surface" John Stone (Mon Jul 21 2008 - 10:22:51 CDT)
Re: Creating a VMD movie from a Tcl script John Stone (Mon Jul 21 2008 - 12:46:17 CDT)
Re: Creating a VMD movie from a Tcl script Samir Unni (Mon Jul 21 2008 - 12:22:20 CDT)
Re: Creating a VMD movie from a Tcl script Samir Unni (Mon Jul 21 2008 - 12:16:53 CDT)
Re: Creating a VMD movie from a Tcl script Axel Kohlmeyer (Mon Jul 21 2008 - 12:01:22 CDT)
Re: Creating a VMD movie from a Tcl script John Stone (Mon Jul 21 2008 - 11:44:58 CDT)
Re: Creating a VMD movie from a Tcl script Samir Unni (Mon Jul 21 2008 - 11:35:51 CDT)
Re: Creating a VMD movie from a Tcl script Samir Unni (Mon Jul 21 2008 - 07:57:59 CDT)
Re: Creating a VMD movie from a Tcl script John Stone (Mon Jul 21 2008 - 10:31:28 CDT)
You can s4ve 80% Villa Norberto Martinez (Mon Jul 21 2008 - 01:18:56 CDT)
Re: contour plots Alexandre A. Vakhrouchev (Mon Jul 21 2008 - 02:25:51 CDT)
Re: Selecting atoms that have real SASA greater than 0, Not using "Surface" Schreiner Eduard (Sun Jul 20 2008 - 22:03:40 CDT)
Selecting atoms that have real SASA greater than 0, Not using "Surface" Christopher Gillespie (Sun Jul 20 2008 - 16:28:04 CDT)
Parametrization of hydrogen sulfide Raul Araya (Fri Jul 18 2008 - 17:54:45 CDT)
Re: vmd MacOSX using dispdev Giovanni Bellesia (Fri Jul 18 2008 - 16:00:00 CDT)
Re: vmd MacOSX using dispdev Kevin DeMarco (Fri Jul 18 2008 - 13:33:09 CDT)
Re: real coordinates Axel Kohlmeyer (Fri Jul 18 2008 - 12:08:25 CDT)
Re: vmd MacOSX using dispdev John Stone (Thu Jul 17 2008 - 22:12:18 CDT)
Re: Creating a VMD movie from a Tcl script John Stone (Thu Jul 17 2008 - 21:56:35 CDT)
real coordinates Maria Sanchez Farran (Thu Jul 17 2008 - 21:40:46 CDT)
vmd MacOSX using dispdev Brian Kidd (Thu Jul 17 2008 - 18:08:03 CDT)
Re: Creating a VMD movie from a Tcl script Samir Unni (Thu Jul 17 2008 - 21:18:24 CDT)
Re: Compiling from source on Mac OS X 10.5 John Stone (Thu Jul 17 2008 - 17:04:38 CDT)
Re: Creating a VMD movie from a Tcl script John Stone (Thu Jul 17 2008 - 17:02:05 CDT)
Re: Error message in VMD console when I try to switch to Python mode. John Stone (Thu Jul 17 2008 - 16:50:42 CDT)
Re: tachyon rendering on black background figure John Stone (Thu Jul 17 2008 - 16:31:06 CDT)
Re: Tetrahedral representation John Stone (Thu Jul 17 2008 - 16:14:35 CDT)
Re: VMD Does not start on my MacBook John Stone (Thu Jul 17 2008 - 15:39:55 CDT)
Re: Fwd: PDB Bonds versus "distance" bonds John Stone (Thu Jul 17 2008 - 09:24:55 CDT)
Re: autopsf from console Peter Freddolino (Thu Jul 17 2008 - 12:52:33 CDT)
autopsf from console brosbam_at_berkeley.edu (Thu Jul 17 2008 - 12:23:21 CDT)
Re: Error message in VMD console when I try to switch to Python mode. Katherine Parra (Thu Jul 17 2008 - 09:30:22 CDT)
Re: Error message in VMD console when I try to switch to Python mode. John Stone (Thu Jul 17 2008 - 09:21:29 CDT)
Re: Error message in VMD console when I try to switch to Python mode. Katherine Parra (Thu Jul 17 2008 - 09:13:14 CDT)
Re: Fwd: PDB Bonds versus "distance" bonds Sergey Ivanov (Thu Jul 17 2008 - 08:14:39 CDT)
Re: Tetrahedral representation FX (Thu Jul 17 2008 - 06:19:09 CDT)
VMD Does not start on my MacBook Dr. Seth Olsen (Wed Jul 16 2008 - 21:15:57 CDT)
Re: Tetrahedral representation Axel Kohlmeyer (Wed Jul 16 2008 - 18:24:09 CDT)
Tetrahedral representation FX (Wed Jul 16 2008 - 17:20:22 CDT)
Re: Error message in VMD console when I try to switch to Python mode. Katherine Parra (Wed Jul 16 2008 - 14:06:06 CDT)
Re: Error message in VMD console when I try to switch to Python mode. John Stone (Wed Jul 16 2008 - 14:19:51 CDT)
Re: Error message in VMD console when I try to switch to Python mode. John Stone (Wed Jul 16 2008 - 13:28:55 CDT)
Error message in VMD console when I try to switch to Python mode. Katherine Parra (Wed Jul 16 2008 - 13:16:28 CDT)
Creating a VMD movie from a Tcl script Samir Unni (Wed Jul 16 2008 - 09:32:37 CDT)
Re: Problem writing trajectory to "crd" (Amber) format? Axel Kohlmeyer (Wed Jul 16 2008 - 09:31:59 CDT)
Re: Fwd: memory overflow problem of Tcl scripting when dealing with trajectories(sorry for cross mailing...) Peter Freddolino (Wed Jul 16 2008 - 07:20:26 CDT)
Re: ResdueType and hydrophobicity scale Andrew Dalke (Wed Jul 16 2008 - 05:45:13 CDT)
Problem writing trajectory to "crd" (Amber) format? Ian (Wed Jul 16 2008 - 04:43:24 CDT)
Fwd: memory overflow problem of Tcl scripting when dealing with trajectories(sorry for cross mailing...) bo liu (Wed Jul 16 2008 - 03:18:43 CDT)
Re: purple bacteria and psfgen John Stone (Wed Jul 16 2008 - 02:50:49 CDT)
Re: ResdueType and hydrophobicity scale John Stone (Wed Jul 16 2008 - 02:47:4

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