From: FX (fxcoudert_at_gmail.com)
Date: Thu Jan 05 2012 - 15:28:58 CST

> If you can run the same set of tests I just emailed to Joshua Moore,
> that would be great. I'm hoping this is a simple problem to fix.

/Applications/VMD 1.9.1.app/Contents/vmd $ otool -L vmd_MACOSXX86_64
vmd_MACOSXX86_64:
        /usr/lib/libmx.A.dylib (compatibility version 1.0.0, current version 315.0.0)
        /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL (compatibility version 1.0.0, current version 1.0.0)
        /System/Library/Frameworks/AGL.framework/Versions/A/AGL (compatibility version 1.0.0, current version 1.0.0)
        @executable_path/libcudart.dylib (compatibility version 1.1.0, current version 4.0.0)
        /System/Library/Frameworks/OpenCL.framework/Versions/A/OpenCL (compatibility version 1.0.0, current version 1.0.0)
        /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 125.2.1)
        @executable_path/../Frameworks/Tk.framework/Versions/8.5/Tk (compatibility version 8.5.0, current version 8.5.9)
        @executable_path/../Frameworks/Tcl.framework/Versions/8.5/Tcl (compatibility version 8.5.0, current version 8.5.9)
        /System/Library/Frameworks/Cocoa.framework/Versions/A/Cocoa (compatibility version 1.0.0, current version 15.0.0)
        /usr/lib/libstdc++.6.dylib (compatibility version 7.0.0, current version 7.9.0)
        /usr/lib/libobjc.A.dylib (compatibility version 1.0.0, current version 227.0.0)
        /System/Library/Frameworks/CoreServices.framework/Versions/A/CoreServices (compatibility version 1.0.0, current version 44.0.0)
        /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation (compatibility version 150.0.0, current version 550.42.0)
        /System/Library/Frameworks/ApplicationServices.framework/Versions/A/ApplicationServices (compatibility version 1.0.0, current version 38.0.0)
        /System/Library/Frameworks/Foundation.framework/Versions/C/Foundation (compatibility version 300.0.0, current version 751.42.0)
        /System/Library/Frameworks/AppKit.framework/Versions/C/AppKit (compatibility version 45.0.0, current version 1038.35.0)

VMD runs fine in text mode, so it's not a problem with the plugins you indicated:

/Applications/VMD 1.9.1.app/Contents/vmd $ ./vmd_MACOSXX86_64 -dispdev text
Info) VMD for MACOSXX86_64, version 1.9.1beta1 (December 29, 2011)
Info) http://www.ks.uiuc.edu/Research/vmd/
Info) Email questions and bug reports to vmd_at_ks.uiuc.edu
Info) Please include this reference in published work using VMD:
Info) Humphrey, W., Dalke, A. and Schulten, K., `VMD - Visual
Info) Molecular Dynamics', J. Molec. Graphics 1996, 14.1, 33-38.
Info) -------------------------------------------------------------
Info) Multithreading available, 4 CPUs detected.
Warning) Detected a mismatch between CUDA runtime and GPU driver
Warning) Check to make sure that GPU drivers are up to date.
Info) No CUDA accelerator devices available.
Info) OpenCL Platform[0]: Apple, FULL_PROFILE Devices: 2
Info) [0] Intel(R) Core(TM) i7 CPU M 620 @ 2.67GHz 4 CU @ 2.60 GHz, 4294MB RAM
Info) [1] GeForce GT 330M 6 CU @ 1.07 GHz, 536MB RAM
Info) Dynamically loaded 2 plugins in directory:
Info) /Applications/VMD 1.9.1.app/Contents/vmd/plugins/MACOSXX86_64/molfile
vmd > quit
Info) VMD for MACOSXX86_64, version 1.9.1beta1 (December 29, 2011)
Info) Exiting normally.

If you can manage to build a version with debugging symbols, I'll try it.

Thanks,
FX