VMD-L Mailing List
From: Jim Nettles (jnettle_at_emory.edu)
Date: Wed Feb 04 2004 - 11:52:31 CST
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Hello,
I am new to this list, so I apologize if this is an obvious question.
I searched through the archive and didn't figure it out either.
I am using VMD 1.8.2 on a Mac with OS10.2.8.
I have had great fun with VMDs graphic performance, playing/analyzing
dynamics trajectories, and generating smashing images. I want to use
VMD to generate the graphics for a current piece of work involving
protein crystallography. I've run into my problem dealing with the
density maps.
I have maps from CNS, and CCP4 in different formats, and I can at
least get the X-plor format to load. I would like to see a small piece
of the map centered around my ligand, and then tweak the settings of
color, size etc... for a good picture (similar to what one can do in
"O"). Can someone help me? I didn't find what I was looking for in the
manual. What commands and controls are available to work with these
types of maps?
Thank you,
Jim Nettles
Chemistry/Pharmacology
Emory University
- Next message: John Stone: "Re: How to install VMD on AIX5 OpenGL server"
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- Reply: John Stone: "Re: Densities for protein and ligand"
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