VMD-L Mailing List

From: Martin Lepsik (lepsik_at_uochb.cas.cz)
Date: Thu Sep 24 2009 - 05:16:09 CDT

Hi John,
I am sending you the vmd strart-up message hoping that you can spot the
problem. I can send you further info in case you need it.

Best regards,

Martin

------------

Info) VMD for LINUXAMD64, version 1.8.7 (August 1, 2009)
Info) http://www.ks.uiuc.edu/Research/vmd/
Info) Email questions and bug reports to vmd_at_ks.uiuc.edu
Info) Please include this reference in published work using VMD:
Info) Humphrey, W., Dalke, A. and Schulten, K., `VMD - Visual
Info) Molecular Dynamics', J. Molec. Graphics 1996, 14.1, 33-38.
Info) -------------------------------------------------------------
Info) Multithreading available, 2 CPUs detected.
Info) Free system memory: 2152MB (55%)
Info) No CUDA accelerator devices available.
Info) OpenGL renderer: GeForce 9500 GT/PCI/SSE2
Info) Features: STENCIL MDE MTX NPOT PP PS
Info) GLSL rendering mode is NOT available.
Info) Textures: 2-D (8192x8192), 3-D (2048x2048x2048), Multitexture (4)
Info) File loading in progress, please wait.
Info) Using plugin xyz for structure file
Ortho/1-2-diSCN-B12H10-2/PBE-def2SVP-opt/1-2-diSCN-B12H10-2.xyz.out-last.xyz
Info) Using plugin xyz for coordinates from file
Ortho/1-2-diSCN-B12H10-2/PBE-def2SVP-opt/1-2-diSCN-B12H10-2.xyz.out-last.xyz
Info) Determining bond structure from distance search ...
Info) Finished with coordinate file
Ortho/1-2-diSCN-B12H10-2/PBE-def2SVP-opt/1-2-diSCN-B12H10-2.xyz.out-last.xyz.
Info) Analyzing structure ...
Info) Atoms: 28
Info) Bonds: 46
Info) Angles: 0 Dihedrals: 0 Impropers: 0 Cross-terms: 0
Info) Bondtypes: 0 Angletypes: 0 Dihedraltypes: 0 Impropertypes: 0
Info) Residues: 1
Info) Waters: 0
Info) Segments: 1
Info) Fragments: 1 Protein: 0 Nucleic: 0
vmd >

John Stone wrote:
> Hi,
> Can you send me the startup messages that VMD prints when you run it
> remotely like this? It sounds to me like some kind of a bug with the X11
> server or drivers you're running, or perhaps the GLX libs on one or the
> other end of the connection.
>
> Cheers,
> John Stone
> vmd_at_ks.uiuc.edu
>
> On Wed, Sep 23, 2009 at 05:49:33PM +0200, Martin Lep?ík wrote:
>> Dear VMD-community,
>> I am a satisfied user of VMD, much appreciating all of its functionalities.
>>
>> Recently, I have run into a problem. Since I have changed my graphics
>> card to NVIDIA GeForce, I am experiencing problems with the default
>> "Lines" representation on a remote LINUX system that I am accessing via
>> a firewall computer using ssh -X. Other representations work, on my
>> local computer it works as well. I have switched off "Composite"
>> Extension of X11 locally. I am using VMD, ver 1.8.7. on LINUX, ver. AMD64.
>>
>> Could you please give me some advice?
>>
>> Best regards,
>>
>>