VMD-L Mailing List
From: John Stone (johns_at_ks.uiuc.edu)
Date: Wed Oct 20 2010 - 10:23:25 CDT
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Hi,
You can add an ion using the molefacture plugin and you can
interactively edit bonds in VMD. If intend to run this as a
simulation that still leaves the issue of having force field parameters
for your ion, which you'll likely have to solve for yourself.
Cheers,
John Stone
vmd_at_ks.uiuc.edu
On Wed, Oct 20, 2010 at 02:55:36PM +0800, Joyce Tan wrote:
> Hi,
>
> I would like to add an cadmium ion which would be connecting 4 sulphur
> atoms from 4 cysteines through covalent bonds.
>
> Is vmd capable to do this or is there any plugin to add the cadmium ions
> and bonding formation?
>
> Regards,
> Joyce
-- NIH Resource for Macromolecular Modeling and Bioinformatics Beckman Institute for Advanced Science and Technology University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801 Email: johns_at_ks.uiuc.edu Phone: 217-244-3349 WWW: http://www.ks.uiuc.edu/~johns/ Fax: 217-244-6078
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