VMD-L Mailing List

From: vani panguluri (vanipanguluri_at_gmail.com)
Date: Wed Nov 03 2010 - 13:30:40 CDT

#read the files

coordpdb 1k4u.pdb

coorpdbd apocynin.pdb

#Write the protein and membrane into one combined file

writepsf apocynin_merged

writepdb apocynin_merged

this was the script i had used...

On Wed, Nov 3, 2010 at 1:03 PM, John Stone <johns_at_ks.uiuc.edu> wrote:

>
> Hi,
> It would be helpful if you told us something about _how_ you were
> attempting to merge the structures, as you haven't specified anything
> about what script or tool you're trying to use to do this. To get any
> sort of useful feedback, you need to be completely explicit. Without
> such information, nobody can guess what you're doing, nor why it isn't
> working.
>
> Cheers,
> John Stone
> vmd_at_ks.uiuc.edu
>
> On Wed, Nov 03, 2010 at 12:18:16PM -0500, vani panguluri wrote:
> > Hello,
> >
> > While i am performing merging of two files one containg 1470 with the
> file
> > containing 22 but i am unable to merge them both as in the output i am
> > getting only the 1468 atoms which doesn't having the information about
> the
> > file containing 22 atoms can one give me any suggestions how to merge
> > these two files.
> >
> > Thanks & Regards,
> > Vani
>
> --
> NIH Resource for Macromolecular Modeling and Bioinformatics
> Beckman Institute for Advanced Science and Technology
> University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> Email: johns_at_ks.uiuc.edu Phone: 217-244-3349
> WWW: http://www.ks.uiuc.edu/~johns/ <http://www.ks.uiuc.edu/%7Ejohns/>
> Fax: 217-244-6078
>