VMD-L Mailing List
From: Vermaas, Joshua (Joshua.Vermaas_at_nrel.gov)
Date: Fri Jun 30 2017 - 18:04:29 CDT
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No. Fragments and bonds are datastructures that VMD stores per molecule,
and if you want them to change at every frame, they would need to be
recalculated at every frame.
-Josh
On 06/30/2017 05:00 PM, MD Simulation wrote:
> Hello,
>
> Are there any trajectory formats that VMD can read that allows for
> dynamic bond breaking and forming that would adjust fragment count
> during visualization? Basically an auto- mol reanalyze, mol bondsrecal.
>
> Thanks
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