VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Tue Jun 28 2016 - 11:43:21 CDT

Hi,
  What options did you have in config.options when you started compilation
of VMD? The error messages you posted appear to indicate some kind of
inconsistency in the configuration of the VMD build, aside from whatever
symbols may also be missing at link time. Without more information about
what exactly you tried it is not possible to give concrete suggestions.

Cheers,
  John Stone
  vmd_at_ks.uiuc.edu

On Fri, Jun 24, 2016 at 10:16:22AM +0200, Stefano Guglielmo wrote:
> In the previous post I forgot to write that I edited the makefile for
> header files, libraries and library directories and checked several times
> all the paths that should be correct.
> Thanks again
> Stefano
>
> ---------- Forwarded message ----------
> From: Stefano Guglielmo <[1]stefano.guglielmo_at_unito.it>
> Date: 2016-06-23 14:08 GMT+02:00
> Subject: troubles with openGL
> To: [2]vmd-l_at_ks.uiuc.edu
>
> Dear all,
>
> I am compiling VMD on a centOS 7 workstation; I installed several
> dependencies among which openGL libraries
> (mesa-libGL-10.6.5-3.20150824.el7.x86_64 and
> mesa-libGL-devel-10.6.5-3.20150824.el7.x86_64), but, eventhough I linked
> them in the makefile, compilation stops with a number of undefined
> reference issues referring to openGLDisplayDevice.o; I also tried to use
> updated header files from [3]https://www.opengl.org/registry/ as suggested
> in vmd compiling instructions, but the result was exactly the same.
>
> Any suggestions or workaround?
>
> Below is the output of make ("riferimento non definito" is undefined
> reference, just in case...):
>
> OpenGLDisplayDevice.o: nella funzione
> "OpenGLDisplayDevice::~OpenGLDisplayDevice()":
> OpenGLDisplayDevice.C:(.text+0x2f): riferimento non definito a
> "OpenGLRenderer::free_opengl_ctx()"
> OpenGLDisplayDevice.C:(.text+0x8d): riferimento non definito a
> "OpenGLRenderer::~OpenGLRenderer()"
> OpenGLDisplayDevice.o: nella funzione
> "OpenGLDisplayDevice::~OpenGLDisplayDevice()":
> OpenGLDisplayDevice.C:(.text+0xd4f): riferimento non definito a
> "OpenGLRenderer::free_opengl_ctx()"
> OpenGLDisplayDevice.C:(.text+0xd9c): riferimento non definito a
> "OpenGLRenderer::~OpenGLRenderer()"
> OpenGLDisplayDevice.C:(.text+0xdb5): riferimento non definito a
> "OpenGLRenderer::~OpenGLRenderer()"
> OpenGLDisplayDevice.o: nella funzione
> "OpenGLDisplayDevice::OpenGLDisplayDevice()":
> OpenGLDisplayDevice.C:(.text+0xdda): riferimento non definito a
> "OpenGLRenderer::OpenGLRenderer(char const*)"
> OpenGLDisplayDevice.o: nella funzione
> "OpenGLDisplayDevice::open_window(char*, int*, int*, int, char**)":
> OpenGLDisplayDevice.C:(.text+0x175b): riferimento non definito a
> "OpenGLRenderer::setup_initial_opengl_state()"
> OpenGLDisplayDevice.C:(.text+0x1df6): riferimento non definito a
> "OpenGLExtensions::vmdQueryExtension(char const*)"
> OpenGLDisplayDevice.o: nella funzione "OpenGLDisplayDevice::init(int,
> char**, VMDApp*, int*, int*)":
> OpenGLDisplayDevice.C:(.text+0x1fe4): riferimento non definito a
> "OpenGLRenderer::set_sphere_mode(int)"
> OpenGLDisplayDevice.C:(.text+0x1ff2): riferimento non definito a
> "OpenGLRenderer::set_sphere_res(int)"
> OpenGLDisplayDevice.C:(.text+0x2000): riferimento non definito a
> "OpenGLRenderer::set_line_width(int)"
> OpenGLDisplayDevice.C:(.text+0x200e): riferimento non definito a
> "OpenGLRenderer::set_line_style(int)"
> OpenGLDisplayDevice.o: nella funzione
> "OpenGLDisplayDevice::~OpenGLDisplayDevice()":
> OpenGLDisplayDevice.C:(.text+0x82): riferimento non definito a
> "OpenGLRenderer::~OpenGLRenderer()"
> OpenGLDisplayDevice.o: nella funzione
> "OpenGLDisplayDevice::prepare3D(int)":
> OpenGLDisplayDevice.C:(.text+0x20a1): riferimento non definito a
> "OpenGLRenderer::prepare3D(int)"
> OpenGLDisplayDevice.o:(.rodata._ZTI19OpenGLDisplayDevice[_ZTI19OpenGLDisplayDevice]+0x10):
> riferimento non definito a "typeinfo for OpenGLRenderer"
> OpenGLDisplayDevice.o:(.rodata._ZTV19OpenGLDisplayDevice[_ZTV19OpenGLDisplayDevice]+0x28):
> riferimento non definito a "OpenGLRenderer::do_define_light(int, float*,
> float*)"
> OpenGLDisplayDevice.o:(.rodata._ZTV19OpenGLDisplayDevice[_ZTV19OpenGLDisplayDevice]+0x30):
> riferimento non definito a "OpenGLRenderer::do_activate_light(int, int)"
> OpenGLDisplayDevice.o:(.rodata._ZTV19OpenGLDisplayDevice[_ZTV19OpenGLDisplayDevice]+0xa0):
> riferimento non definito a "OpenGLRenderer::cueing_on()"
> OpenGLDisplayDevice.o:(.rodata._ZTV19OpenGLDisplayDevice[_ZTV19OpenGLDisplayDevice]+0xa8):
> riferimento non definito a "OpenGLRenderer::cueing_off()"
> OpenGLDisplayDevice.o:(.rodata._ZTV19OpenGLDisplayDevice[_ZTV19OpenGLDisplayDevice]+0xb0):
> riferimento non definito a "OpenGLRenderer::aa_on()"
> OpenGLDisplayDevice.o:(.rodata._ZTV19OpenGLDisplayDevice[_ZTV19OpenGLDisplayDevice]+0xb8):
> riferimento non definito a "OpenGLRenderer::aa_off()"
> OpenGLDisplayDevice.o:(.rodata._ZTV19OpenGLDisplayDevice[_ZTV19OpenGLDisplayDevice]+0xc0):
> riferimento non definito a "OpenGLRenderer::culling_on()"
> OpenGLDisplayDevice.o:(.rodata._ZTV19OpenGLDisplayDevice[_ZTV19OpenGLDisplayDevice]+0xc8):
> riferimento non definito a "OpenGLRenderer::culling_off()"
> OpenGLDisplayDevice.o:(.rodata._ZTV19OpenGLDisplayDevice[_ZTV19OpenGLDisplayDevice]+0xd0):
> riferimento non definito a "OpenGLRenderer::set_stereo_mode(int)"
> OpenGLDisplayDevice.o:(.rodata._ZTV19OpenGLDisplayDevice[_ZTV19OpenGLDisplayDevice]+0xe0):
> riferimento non definito a "OpenGLRenderer::set_cache_mode(int)"
> OpenGLDisplayDevice.o:(.rodata._ZTV19OpenGLDisplayDevice[_ZTV19OpenGLDisplayDevice]+0xe8):
> riferimento non definito a "OpenGLRenderer::set_render_mode(int)"
> OpenGLDisplayDevice.o:(.rodata._ZTV19OpenGLDisplayDevice[_ZTV19OpenGLDisplayDevice]+0xf0):
> riferimento non definito a "OpenGLRenderer::abs_screen_loc_3D(float*,
> float*)"
> OpenGLDisplayDevice.o:(.rodata._ZTV19OpenGLDisplayDevice[_ZTV19OpenGLDisplayDevice]+0xf8):
> riferimento non definito a "OpenGLRenderer::abs_screen_loc_2D(float*,
> float*)"
> OpenGLDisplayDevice.o:(.rodata._ZTV19OpenGLDisplayDevice[_ZTV19OpenGLDisplayDevice]+0x108):
> riferimento non definito a "OpenGLRenderer::find_3D_from_2D(float const*,
> float const*, float*)"
> OpenGLDisplayDevice.o:(.rodata._ZTV19OpenGLDisplayDevice[_ZTV19OpenGLDisplayDevice]+0x110):
> riferimento non definito a "OpenGLRenderer::loadmatrix(Matrix4 const&)"
> OpenGLDisplayDevice.o:(.rodata._ZTV19OpenGLDisplayDevice[_ZTV19OpenGLDisplayDevice]+0x118):
> riferimento non definito a "OpenGLRenderer::multmatrix(Matrix4 const&)"
> OpenGLDisplayDevice.o:(.rodata._ZTV19OpenGLDisplayDevice[_ZTV19OpenGLDisplayDevice]+0x120):
> riferimento non definito a "OpenGLRenderer::set_background(float const*)"
> OpenGLDisplayDevice.o:(.rodata._ZTV19OpenGLDisplayDevice[_ZTV19OpenGLDisplayDevice]+0x128):
> riferimento non definito a "OpenGLRenderer::set_backgradient(float const*,
> float const*)"
> OpenGLDisplayDevice.o:(.rodata._ZTV19OpenGLDisplayDevice[_ZTV19OpenGLDisplayDevice]+0x138):
> riferimento non definito a "OpenGLRenderer::prepareOpaque()"
> OpenGLDisplayDevice.o:(.rodata._ZTV19OpenGLDisplayDevice[_ZTV19OpenGLDisplayDevice]+0x140):
> riferimento non definito a "OpenGLRenderer::prepareTrans()"
> OpenGLDisplayDevice.o:(.rodata._ZTV19OpenGLDisplayDevice[_ZTV19OpenGLDisplayDevice]+0x148):
> riferimento non definito a "OpenGLRenderer::clear()"
> OpenGLDisplayDevice.o:(.rodata._ZTV19OpenGLDisplayDevice[_ZTV19OpenGLDisplayDevice]+0x150):
> riferimento non definito a "OpenGLRenderer::left()"
> OpenGLDisplayDevice.o:(.rodata._ZTV19OpenGLDisplayDevice[_ZTV19OpenGLDisplayDevice]+0x158):
> riferimento non definito a "OpenGLRenderer::right()"
> OpenGLDisplayDevice.o:(.rodata._ZTV19OpenGLDisplayDevice[_ZTV19OpenGLDisplayDevice]+0x160):
> riferimento non definito a "OpenGLRenderer::normal()"
> OpenGLDisplayDevice.o:(.rodata._ZTV19OpenGLDisplayDevice[_ZTV19OpenGLDisplayDevice]+0x180):
> riferimento non definito a "OpenGLRenderer::render(VMDDisplayList const*)"
> OpenGLDisplayDevice.o:(.rodata._ZTV19OpenGLDisplayDevice[_ZTV19OpenGLDisplayDevice]+0x188):
> riferimento non definito a "OpenGLRenderer::render_done()"
> OpenGLDisplayDevice.o:(.rodata._ZTV19OpenGLDisplayDevice[_ZTV19OpenGLDisplayDevice]+0x198):
> riferimento non definito a "OpenGLRenderer::enable_stencil_stereo(int)"
> OpenGLDisplayDevice.o:(.rodata._ZTV19OpenGLDisplayDevice[_ZTV19OpenGLDisplayDevice]+0x1a0):
> riferimento non definito a "OpenGLRenderer::disable_stencil_stereo()"
> OpenGLDisplayDevice.o:(.rodata._ZTV19OpenGLDisplayDevice[_ZTV19OpenGLDisplayDevice]+0x1a8):
> riferimento non definito a
> "OpenGLRenderer::set_persp(DisplayDevice::DisplayEye)"
> collect2: error: ld returned 1 exit status
>
> Thanks in advance.
> --
> Stefano GUGLIELMO PhD
> Assistant Professor of Medicinal Chemistry
> Department of Drug Science and Technology
> Via P. Giuria 9
> 10125 Turin, ITALY
> ph. +39 (0)11 6707678
>
> [4][IMG] Mail priva di virus. [5]www.avast.com
>
> --
> Stefano GUGLIELMO PhD
> Assistant Professor of Medicinal Chemistry
> Department of Drug Science and Technology
> Via P. Giuria 9
> 10125 Turin, ITALY
> ph. +39 (0)11 6707678
>
> References
>
> Visible links
> 1. mailto:stefano.guglielmo_at_unito.it
> 2. mailto:vmd-l_at_ks.uiuc.edu
> 3. https://www.opengl.org/registry/
> 4. https://www.avast.com/sig-email?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=webmail
> 5. https://www.avast.com/sig-email?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=webmail 

-- 
NIH Center for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
http://www.ks.uiuc.edu/~johns/           Phone: 217-244-3349
http://www.ks.uiuc.edu/Research/vmd/