VMD-L Mailing List

From: Aman Jindal (amanjindal04711_at_gmail.com)
Date: Tue Mar 20 2018 - 01:56:10 CDT

Dear all,

I have a nanosheet solvated by water which I created using nanotube builder
and solvation box in VMD. Now I would like to change few water molecules to
hydroxide (OH) so that the system turns basic and include some Na+ ions to
neutralize this system. How do I do it? The 'Add ions' tool only lets me
add Na+ ions but how do I introduce OH- ions in the system?

Thanks in advance,
Aman