VMD-L Mailing List

From: ramya narasimhan (ramya_jln_at_yahoo.co.in)
Date: Wed Dec 03 2008 - 22:36:40 CST

Hi,
     Actually the protein is like an arc and I want to know the residues on both the faces. Basically I want to select the residues in group (as in insightII) and to name the residues. Hope my question is clear right now. Is it possible?
Thanks in advance.
Ramya.L.

--- On Wed, 3/12/08, Axel Kohlmeyer <akohlmey_at_cmm.chem.upenn.edu> wrote:
From: Axel Kohlmeyer <akohlmey_at_cmm.chem.upenn.edu>
Subject: Re: vmd-l: To find the residues on each side of the protein
To: "ramya narasimhan" <ramya_jln_at_yahoo.co.in>
Cc: vmd-l_at_ks.uiuc.edu
Date: Wednesday, 3 December, 2008, 4:47 PM

On Wed, Dec 3, 2008 at 9:42 AM, ramya narasimhan <ramya_jln_at_yahoo.co.in>
wrote:
> Hi,
> Is it possible to indentify the residues on the each side of the
> protein just by selecting them. I tried the options of selection like
> surface and buried. But I want to name all the residues on the each side
of
> the protein. Is it possible?

that depends solely on what you understand under
"side" of a protein. i wouldn´t know what you are lookin for.

cheers,
   axel

> Thanks in advance.
> Ramya.L.
>
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-- 
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Axel Kohlmeyer   akohlmey_at_cmm.chem.upenn.edu   http://www.cmm.upenn.edu
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