VMD-L Mailing List
From: John Stone (johns_at_ks.uiuc.edu)
Date: Thu Mar 06 2003 - 14:38:49 CST
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Hi Sichun,
'writepdb' is an option to the atomselect command, i.e.:
mol pdbload 1e79 (load ATP structure from PDB...)
set sel [atomselect top "all"]
$sel writepdb my1e79.pdb
$sel delete
The docs list the various atomselect subcommands:
http://www.ks.uiuc.edu/Research/vmd/vmd-1.8/ug/node109.html
Thanks,
John Stone
vmd_at_ks.uiuc.edu
On Thu, Mar 06, 2003 at 12:33:17PM -0800, Sichun Yang wrote:
> Hi John,
>
> Where is 'writepdb'? I can't find it.
>
> Thanks,
> Sichun
>
> > avoid the problem you're having there. From there, you can
> > use the 'writepdb' option of atomselect to write the structure
> > that you changed to a new file so that you can load that one
> > from then on. If this isn't appropriate to your needs, there
> > are other things one can do to get what you want.
> >
-- NIH Resource for Macromolecular Modeling and Bioinformatics Beckman Institute for Advanced Science and Technology University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801 Email: johns_at_ks.uiuc.edu Phone: 217-244-3349 WWW: http://www.ks.uiuc.edu/~johns/ Fax: 217-244-6078
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