VMD-L Mailing List

From: no tengo nombre (nuevo25es_at_yahoo.es)
Date: Wed Oct 29 2008 - 04:17:12 CDT

--- El mar, 28/10/08, Axel Kohlmeyer <akohlmey_at_cmm.chem.upenn.edu> escribió:

> De: Axel Kohlmeyer <akohlmey_at_cmm.chem.upenn.edu>
> Asunto: Re: vmd-l: reading multiples molecules.
> Para: "no tengo nombre" <nuevo25es_at_yahoo.es>
> CC: vmd-l_at_ks.uiuc.edu
> Fecha: martes, 28 octubre, 2008 3:20
> On Tue, 28 Oct 2008, no tengo nombre wrote:
>
> > hi
> > i'm new with VMD and after read the manual and use
> the visual interfaz under windows system i begin to create
> little programs in vmd.
> >
> > i want read a secuence of xyz files in one command and
> try:
> > mol addfile deposit0.*.xyz type xyz (and other
> combination of .* with ' and " and don't run)
> >
> > and
> >
> > animate read xyz deposit0.*.xyz
> > and don't run,
>
> of course they don't work. you are not using it
> correctly.
>
> ...and to preempt your next question (taking your file name
> as a hint).
> VMD does not support trajectories where the identity and/or
> number
> of particles changes.
>
hi.
i make a manual test with 10 xyz images and load how tell in multimolecule animation in:
 http://www.ks.uiuc.edu/Research/vmd/plugins/multimolanim/
and runs good for a system with diferent numbers of atoms.

but now i want simulate a more big system and need automate it.
thanks for all.
> cheers,
> axel.
>
> >
> > someone can tell me how i can put the format of file,
> for select all files begining with deposit0 and finishing
> with .xyz.
> >
> > thank for all.
> >
> >
> >
> >
>
> --
> =======================================================================
> Axel Kohlmeyer akohlmey_at_cmm.chem.upenn.edu
> http://www.cmm.upenn.edu
> Center for Molecular Modeling -- University of
> Pennsylvania
> Department of Chemistry, 231 S.34th Street, Philadelphia,
> PA 19104-6323
> tel: 1-215-898-1582, fax: 1-215-573-6233, office-tel:
> 1-215-898-5425
> =======================================================================
> If you make something idiot-proof, the universe creates a
> better idiot.