VMD-L Mailing List
From: John Stone (johns_at_ks.uiuc.edu)
Date: Thu May 16 2002 - 10:09:07 CDT
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Dear Wuwei,
You can use VMD's atom selection mechanism to control the display
of individual atoms by typing an atom selection into the input field
in the graphics form.
This is described more fully in the VMD user's guide here:
http://www.ks.uiuc.edu/Research/vmd/vmd-1.7.1/ug/node78.html
Let us know if you have more questions.
Thanks,
John Stone
vmd_at_ks.uiuc.edu
On Thu, May 16, 2002 at 11:03:35AM -0700, Wuwei Liang wrote:
> Hello, folks.
> I use VMD to visualize a set of atoms in PDB file format. I want to filter
> out some of atoms according to some values, e.g. the coordinates, so that
> VMD will display a subset of the atoms. But I found in VMD one can only set
> a whole molecule active or inactive, while one can not control the
> visualization of a single atom in the molecule. Is there a way in VMD to
> complete such a task?
>
> Thanks.
>
> Wuwei
>
-- NIH Resource for Macromolecular Modeling and Bioinformatics Beckman Institute for Advanced Science and Technology University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801 Email: johns_at_ks.uiuc.edu Phone: 217-244-3349 WWW: http://www.ks.uiuc.edu/~johns/ Fax: 217-244-6078
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