VMD-L Mailing List

From: Navendu bhatnagar (navendu.bhatnagar_at_gmail.com)
Date: Tue Jun 02 2009 - 09:51:01 CDT

Hello all,

I am trying to run apbs electrostatics calculations using the provided
plugin in VMD.
I created the required pqr file using the pdb2pqr converter. Then loaded it
into VMD and opened the APBS tool.

I have installed APBS locally on my machine. I have VMD 1.8.6 version

I specified the path of the .pqr input file and apbs executable in the edit
section of apbs tool.

When I run APBS, I get the following error,
*APBSRun : output files missing or unreadable.*

I see that earlier this error was a reason of spaces in the file/folder
path name.
The path in my case is :* /home2/navendu/lipidmembrane/sytcal/apbs/trial*

Am I missing something here ? Why does it say that output files are missing
?
Any help / suggestions on this will be appreciated. 

-- 
NAVENDU BHATNAGAR