VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Mon Jun 11 2018 - 15:53:42 CDT

Hi,
  If you look in the VMD installation folder, you'll see that the topogromacs
code is found within this subdirectory:
  plugins/noarch/tcl/topotools1.7/topogromacs.tcl

Now, that being said, you should just run "package require topotools" to get
access to all of the associated commands.

Best regards,
  John Stone
  vmd_at_ks.uiuc.edu

On Mon, Jun 11, 2018 at 10:30:51PM +0200, Francesco Pietra wrote:
> I would like to try porting to gromacs/charmm36 a protein-ligand system
> built and running on namd/charmm36. To this end I was unable to find a
> topotool folder, inclusive of topogromacs, on my installations of vmd
> 1.9.4a12 or vmd 1.9.3. Although I know how to add third-part plugins to
> vmd, I am confused here. Thanks for advice.
>
> francesco pietra 

-- 
NIH Center for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
http://www.ks.uiuc.edu/~johns/           Phone: 217-244-3349
http://www.ks.uiuc.edu/Research/vmd/