VMD-L Mailing List

From: Amir Suhail (amirsuhail029_at_gmail.com)
Date: Thu Oct 03 2019 - 05:27:35 CDT

Hi all,

I selected my molecule and used writepdb to convert .coor to pdb file but
vmd is giving following error :-

PDB WRITE ERROR: Position, occupancy, or b-factor (beta) for atom 0
                                 cannot be written in PDB format.
                                 File will be truncated.

This has been discussed in mailing list :-
https://www.ks.uiuc.edu/Research/vmd/mailing_list/vmd-l/14674.html

I shifted the origin to center of mass and set occupancy and beta to zero
according to answer in above link but still I am getting writepdb failed
error.

Thanks in advance,

-Amir