VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Tue May 30 2006 - 17:32:24 CDT

Hi,
  This is done using the File->Save Coordinates menu, or via the
atom selection 'writexxx' subcommand:
  set sel [atomselect top all]
  sel frame 99
  $sel writepdb /tmp/foo.pdb

  John Stone
  vmd_at_ks.uiuc.edu

On Sun, May 28, 2006 at 05:33:44PM +0800, Guo Zhi wrote:
> Hi everyone:
> I have two pdb files with the same structure. I did an alignment between
> these two structures. For a better comparison, i want to save the aligned
> coordinates after the alignment. But i have no idea how to do it? Anyone
> can help me? 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
Email: johns_at_ks.uiuc.edu                 Phone: 217-244-3349
  WWW: http://www.ks.uiuc.edu/~johns/      Fax: 217-244-6078