From: Thomas Evangelidis (tevang3_at_gmail.com)
Date: Mon Oct 22 2012 - 06:15:49 CDT

load prmtop as Amber7 Parm and mdcrd as Amber7 Restart file type.

On 20 October 2012 23:57, Jose Borreguero <borreguero_at_gmail.com> wrote:

> Dear VMD users,
>
> I generated a simple water box AmberTools 1.5. When VMD1.9 loads the
> prmtop and mdcrd, it shows a system with very very wrong bond
> connectivities. In addition, NAMD2.8 fails when reading the topology file
> but the error message is not informative.
>
> Any help would be immensely appreciated. If you want to try these files
> for yourself in your VMD, here is the link for the prmtop and mdcrd files
> (72Kb)
> http://www.adrive.com/public/XVwBec/files.tar.gz
>
> Best regards,
> Jose M. Borreguero
>
>
>

-- 
======================================================================
Thomas Evangelidis
PhD student
University of Athens
Faculty of Pharmacy
Department of Pharmaceutical Chemistry
Panepistimioupoli-Zografou
157 71 Athens
GREECE
email: tevang_at_pharm.uoa.gr
          tevang3_at_gmail.com
website: https://sites.google.com/site/thomasevangelidishomepage/