VMD-L Mailing List

From: Jérôme Hénin (jerome.henin_at_ibpc.fr)
Date: Mon Aug 27 2018 - 04:05:58 CDT

Hi Peter,

sscache will help:
https://www.ks.uiuc.edu/Research/vmd/script_library/scripts/sscache/

Best,
Jerome

On Mon, 27 Aug 2018 at 10:21, Peter Mawanga <peter.mawanga.lagos_at_gmail.com>
wrote:

> Hello VMD users
>
> I have a cluster of small peptides bound to a membrane surface and I would
> like to visualise the secondary structure changes in them over the
> simulation period.
>
> I have run Timeline, and although I could see the secondary structure
> changes in the Timeline plot, but they are not reflected in the New Cartoon
> representation of the peptides over the simulation trajectory.
>
> Could someone please suggest a way to overcome this issue? I am using VMD
> 1.9.3.
>
> --
> Thanks
> Peter
>