VMD-L Mailing List
From: John Stone (johns_at_ks.uiuc.edu)
Date: Tue Sep 04 2012 - 14:11:09 CDT
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Hi Marc,
The largest usage of IMD that I know of has been related to work
our group has done on ribosomes. In this case, the IMD simulations
were used to do work on the model to fix things, and then this was
followed with traditional batch mode MD runs. I don't know if the
IMD part of the work was discussed much in resulting publications,
but I can ask and get back to you if you like.
Cheers,
John
On Tue, Sep 04, 2012 at 07:02:10PM +0200, Marc Baaden wrote:
>
> Dear All,
>
> I am looking for the largest interactive simulations (eg using the IMD
> protocol between VMD and NAMD) that have been published to date. From the
> VMD website I could only gather examples that are a few years old and I
> was wondering whether I have missed some exciting recent applications of
> IMD for big biomolecular systems.
>
> Thank you very much in advance,
> Marc Baaden
>
> --
> Dr. Marc Baaden - Institut de Biologie Physico-Chimique, Paris
> mailto:baaden_at_smplinux.de - http://www.baaden.ibpc.fr
> FAX: +33 15841 5026 - Tel: +33 15841 5176 ou +33 609 843217
>
>
-- NIH Resource for Macromolecular Modeling and Bioinformatics Beckman Institute for Advanced Science and Technology University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801 http://www.ks.uiuc.edu/~johns/ Phone: 217-244-3349 http://www.ks.uiuc.edu/Research/vmd/ Fax: 217-244-6078
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