VMD-L Mailing List

From: Ryan McGreevy (ryanmcgreevy_at_ks.uiuc.edu)
Date: Thu Mar 19 2015 - 10:29:00 CDT

You can do this with the RMSD Trajectory Tool in the Analysis menu of VMD.

On Thu, Mar 19, 2015 at 8:58 AM Kevin C Chan <cchan2242-c_at_my.cityu.edu.hk>
wrote:

>
>
> Dear Users,
>
> We can simply align two pdb files using "measure fit" and "move". I'm
> thinking how it can be applied to a trajectory. I can imagine loading the
> trajectory and doing the same thing for each single frame and ending with a
> "write dcd" but is there another way?
>
> Thanks in advance,
> Kevin
> City University of Hong Kong
>
>